Query 024598
Match_columns 265
No_of_seqs 134 out of 392
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 1E-119 5E-124 821.9 19.8 263 1-263 1-263 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 3E-119 1E-123 817.9 18.9 260 1-260 1-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 1E-116 4E-121 800.9 26.0 257 1-257 1-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 4E-110 1E-114 752.9 22.4 238 1-239 1-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 1E-84 3.6E-89 577.8 19.5 203 35-244 1-204 (213)
6 2cqj_A BRMS2, U3 small nucleol 98.2 5.3E-07 1.8E-11 66.8 2.7 44 51-94 16-61 (71)
7 3bbn_D Ribosomal protein S4; s 98.0 4.8E-06 1.7E-10 73.2 5.3 47 51-97 97-143 (201)
8 3j20_D 30S ribosomal protein S 97.9 5.9E-06 2E-10 71.6 3.6 44 52-95 112-157 (180)
9 3u5c_J 40S ribosomal protein S 97.9 4.3E-06 1.5E-10 73.4 2.3 46 51-96 115-162 (197)
10 1c05_A Ribosomal protein S4 de 97.8 2.1E-05 7.2E-10 66.3 5.5 50 44-94 53-102 (159)
11 3r8n_D 30S ribosomal protein S 97.8 8.8E-06 3E-10 71.8 2.5 69 52-120 104-176 (205)
12 2vqe_D 30S ribosomal protein S 97.8 2.7E-05 9.1E-10 68.5 5.5 44 52-95 108-151 (209)
13 1p9k_A ORF, hypothetical prote 97.7 1.4E-05 4.9E-10 59.4 2.4 52 42-94 21-72 (79)
14 2xzm_D Ribosomal protein S4 co 97.7 1.8E-05 6.1E-10 68.5 3.2 44 51-94 115-160 (181)
15 3iz6_C 40S ribosomal protein S 97.5 2.9E-06 9.8E-11 74.4 -4.4 43 51-93 117-159 (195)
16 1dm9_A Hypothetical 15.5 KD pr 97.1 0.0012 4E-08 54.0 7.2 61 39-101 6-66 (133)
17 2k6p_A Uncharacterized protein 96.6 0.00049 1.7E-08 52.0 1.1 54 44-99 3-56 (92)
18 1ksk_A Ribosomal small subunit 96.6 0.0037 1.3E-07 54.5 6.9 52 41-94 3-54 (234)
19 1vio_A Ribosomal small subunit 96.5 0.0051 1.8E-07 54.0 6.7 51 42-94 3-53 (243)
20 3dh3_A Ribosomal large subunit 96.0 0.011 3.6E-07 54.1 6.7 65 40-107 5-77 (290)
21 3hp7_A Hemolysin, putative; st 95.9 0.0046 1.6E-07 56.6 3.6 51 43-94 8-60 (291)
22 1v9f_A Ribosomal large subunit 95.2 0.0077 2.6E-07 55.2 2.6 53 40-93 15-67 (325)
23 2do3_A Transcription elongatio 94.6 0.06 2E-06 39.9 5.4 46 175-224 18-63 (69)
24 2jan_A Tyrosyl-tRNA synthetase 94.1 0.11 3.6E-06 50.2 7.5 65 43-113 357-421 (432)
25 2ckk_A KIN17; beta barrel, rib 94.0 0.11 3.7E-06 42.3 6.2 41 157-200 56-96 (127)
26 2ktl_A Tyrosyl-tRNA synthetase 93.3 0.095 3.2E-06 44.6 4.9 75 43-118 51-139 (164)
27 1h3f_A Tyrosyl-tRNA synthetase 93.1 0.1 3.6E-06 50.2 5.5 45 41-86 368-412 (432)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 91.3 0.037 1.3E-06 53.0 0.0 49 41-90 352-400 (420)
29 2ts1_A Tyrosyl-tRNA synthetase 88.2 0.092 3.1E-06 50.4 0.0 47 42-89 352-398 (419)
30 1vq8_T 50S ribosomal protein L 83.0 1.4 5E-05 35.6 4.6 56 171-229 39-101 (120)
31 3u5e_Y L33, YL33, 60S ribosoma 81.5 2.1 7.2E-05 35.0 5.1 56 171-229 46-108 (127)
32 3j21_U 50S ribosomal protein L 78.6 2.4 8.4E-05 34.2 4.6 56 171-229 42-104 (121)
33 1nz9_A Transcription antitermi 78.2 5 0.00017 27.5 5.5 28 173-200 3-30 (58)
34 3iz5_Y 60S ribosomal protein L 75.7 4 0.00014 34.3 5.2 72 171-254 45-123 (150)
35 3r8s_U 50S ribosomal protein L 68.0 4.4 0.00015 31.8 3.5 27 174-200 3-29 (102)
36 4a17_S RPL26, 60S ribosomal pr 67.8 6.5 0.00022 32.4 4.7 56 171-229 45-107 (135)
37 3v2d_Y 50S ribosomal protein L 67.1 3.3 0.00011 32.9 2.7 28 173-200 5-32 (110)
38 4a18_F RPL14; ribosome, eukary 66.3 4.5 0.00015 33.0 3.4 32 175-210 7-38 (126)
39 2ftc_N Mitochondrial ribosomal 66.1 6.9 0.00023 30.3 4.3 23 178-200 1-23 (96)
40 2zjr_R 50S ribosomal protein L 65.4 4.4 0.00015 32.3 3.1 36 174-212 15-50 (115)
41 2zkr_t 60S ribosomal protein L 62.0 4.1 0.00014 33.9 2.4 55 172-229 46-108 (145)
42 3iz5_N 60S ribosomal protein L 56.1 6.1 0.00021 32.5 2.4 26 175-200 7-32 (134)
43 2wg5_A General control protein 55.0 27 0.00092 27.1 6.0 31 152-182 73-103 (109)
44 2e6z_A Transcription elongatio 54.6 5.2 0.00018 27.9 1.6 27 173-199 6-32 (59)
45 4gop_B Putative uncharacterize 53.7 39 0.0013 26.6 6.9 77 68-147 27-114 (136)
46 2pi2_A Replication protein A 3 51.7 88 0.003 27.5 9.6 78 67-147 61-149 (270)
47 4a18_N RPL27, ribosomal protei 48.5 11 0.00038 31.3 2.9 27 175-201 5-31 (144)
48 3izc_N 60S ribosomal protein R 48.0 9.7 0.00033 31.4 2.4 32 175-210 15-46 (138)
49 3j21_5 50S ribosomal protein L 46.9 8.8 0.0003 28.9 1.9 25 175-199 4-28 (83)
50 2joy_A 50S ribosomal protein L 46.3 11 0.00037 28.9 2.3 51 175-229 4-58 (96)
51 1fm0_D Molybdopterin convertin 43.0 53 0.0018 22.9 5.5 23 69-92 52-74 (81)
52 2laq_A Accessory gland-specifi 39.8 14 0.00048 23.7 1.7 18 17-37 2-19 (36)
53 3p8b_B Transcription antitermi 39.3 16 0.00055 29.4 2.5 29 173-201 90-118 (152)
54 3rpf_C Molybdopterin convertin 37.8 48 0.0016 23.2 4.6 28 66-93 41-68 (74)
55 3kdf_D Replication protein A 3 36.8 1.5E+02 0.005 23.0 9.3 78 67-147 21-109 (132)
56 3m9b_A Proteasome-associated A 34.8 55 0.0019 29.4 5.4 51 152-217 133-183 (251)
57 2jvv_A Transcription antitermi 34.4 38 0.0013 27.9 4.1 29 172-200 125-153 (181)
58 2l52_A Methanosarcina acetivor 33.3 50 0.0017 24.6 4.3 25 69-93 66-93 (99)
59 3po0_A Small archaeal modifier 31.8 70 0.0024 22.9 4.7 24 68-92 59-82 (89)
60 3hrd_D Nicotinate dehydrogenas 31.5 20 0.00068 29.9 1.9 51 40-94 21-79 (160)
61 2iwa_A Glutamine cyclotransfer 30.6 2.3E+02 0.008 24.7 8.9 60 110-176 127-191 (266)
62 2in0_A Endonuclease PI-MTUI; h 27.8 81 0.0028 24.4 4.8 25 205-229 54-78 (139)
63 2lcj_A PAB POLC intein; hydrol 27.8 1.8E+02 0.0062 23.7 7.2 42 122-163 75-120 (185)
64 2hbp_A Cytoskeleton assembly c 26.1 54 0.0019 24.0 3.1 44 98-155 4-47 (68)
65 2x1d_A Acyl-coenzyme A\:6-amin 25.5 1.3E+02 0.0046 26.6 6.4 28 40-68 177-204 (357)
66 2kbn_A Conserved protein; nucl 25.5 2.2E+02 0.0074 21.5 9.1 53 104-156 43-100 (109)
67 2g1e_A Hypothetical protein TA 23.5 89 0.0031 22.1 4.0 26 68-93 56-84 (90)
68 3iuw_A Activating signal coint 23.3 49 0.0017 24.9 2.5 17 147-163 31-47 (83)
69 1zv1_A Doublesex protein; UBA 22.5 32 0.0011 24.9 1.3 29 39-70 24-53 (65)
70 3dwg_C 9.5 kDa culture filtrat 21.5 1E+02 0.0035 22.2 4.0 25 69-93 60-87 (93)
71 1giy_D 50S ribosomal protein L 21.1 3.5E+02 0.012 22.8 7.8 71 151-229 61-133 (178)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-119 Score=821.86 Aligned_cols=263 Identities=90% Similarity=1.418 Sum_probs=199.3
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEeccc
Q 024598 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDK 80 (265)
Q Consensus 1 MarG~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~ 80 (265)
|||||++|||||+||+||||+||+++|||+||||||+++|||||+|||||+||||+|.+||++||+||+|+||||+|+|+
T Consensus 1 Marg~kkHlKRl~AP~~W~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~ 80 (265)
T 3iz6_D 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDK 80 (265)
T ss_dssp ------------------------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCT
T ss_pred CCCCcccccccccCCcccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecCCCCcccCCeE
Q 024598 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 160 (265)
Q Consensus 81 ~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv 160 (265)
+|||||||||||++++|+||++||++|||.+|+|++|||+||||||++|+++++|+|||+|||||||+|+||+||+||||
T Consensus 81 ~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DTv 160 (265)
T 3iz6_D 81 TYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTI 160 (265)
T ss_dssp TCCCCTTCEEECCSSCCEEEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceeeCCC
Q 024598 161 KLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 240 (265)
Q Consensus 161 ~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~ 240 (265)
+||||++||+|||||++||+||||||+|+|++|+|++|++|+|||++|||+|++|++|+|+++||||||++++||||||+
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~ 240 (265)
T 3iz6_D 161 KIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPK 240 (265)
T ss_dssp EECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCC
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CcceeeehHHHHHHHHHHHHhcc
Q 024598 241 GKGIKLSIIEEARKRQALATSAA 263 (265)
Q Consensus 241 ~~gi~~~~~~~~~~~~~~~~~~~ 263 (265)
+|||+|+++|||++|+++++++.
T Consensus 241 ~kg~~~~~~eer~~~~~~~~~~~ 263 (265)
T 3iz6_D 241 GKGIKLSIIEEQRKRDAAAQAAA 263 (265)
T ss_dssp CC---------------------
T ss_pred CCceeeehHHhHHHHHHHhhhhc
Confidence 99999999999999999988764
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=3.4e-119 Score=817.95 Aligned_cols=260 Identities=67% Similarity=1.105 Sum_probs=256.4
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEeccc
Q 024598 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDK 80 (265)
Q Consensus 1 MarG~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~ 80 (265)
|||||++|||||+||+||||+||+++|||+||||||+++|||||+|||||+||||+|.+||++||+||+|+||||+|+|+
T Consensus 1 Marg~kkHlKRl~AP~~W~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~ 80 (261)
T 3u5c_E 1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDT 80 (261)
T ss_dssp -CCSCCCCCBTTTSCGGGCCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCT
T ss_pred CCCCcccccccccCCcccccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecCCCCcccCCeE
Q 024598 81 TYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTI 160 (265)
Q Consensus 81 ~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv 160 (265)
+|||||||||||++++|+||++||++|||++|+|++|||+||||||++|+++++|+|||+|||||||+|+||+||+||||
T Consensus 81 ~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dtv 160 (261)
T 3u5c_E 81 TYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTV 160 (261)
T ss_dssp TCEEETTCEEEETTTTEEEECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCEE
T ss_pred CCCCceEEEEEEcCCCCEEEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceeeCCC
Q 024598 161 KLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 240 (265)
Q Consensus 161 ~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~ 240 (265)
+||||++||+|||||++||+||||||+|+|++|+|++|++|+||||+|||+|++|++|+|+++||||||++++||||||+
T Consensus 161 ~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~ 240 (261)
T 3u5c_E 161 KIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPK 240 (261)
T ss_dssp EECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCT
T ss_pred EEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred CcceeeehHHHHHHHHHHHH
Q 024598 241 GKGIKLSIIEEARKRQALAT 260 (265)
Q Consensus 241 ~~gi~~~~~~~~~~~~~~~~ 260 (265)
+|||+++++|||++|++++.
T Consensus 241 ~kg~~~~~~eer~~~~~~~~ 260 (261)
T 3u5c_E 241 GKGIKLSIAEERDRRRAQQG 260 (261)
T ss_dssp TTTCCCCHHHHHHHHTTTTC
T ss_pred CCceeeehHHhHHHHHHhcc
Confidence 99999999999999987653
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=1.2e-116 Score=800.90 Aligned_cols=257 Identities=56% Similarity=0.975 Sum_probs=253.5
Q ss_pred CCCCcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhC--ceEEECCEEec
Q 024598 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQ--RHVLVDAKVRT 78 (265)
Q Consensus 1 MarG~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRdrLg~A~t~rEar~Il~~--g~V~VDGkvr~ 78 (265)
|||||++|||||+||+||||+||+++|||+||||||+++|||||+|||||+|+||+|++||++||+| |+|+||||+|+
T Consensus 1 marG~kkHlKRl~AP~~W~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~ 80 (260)
T 2xzm_W 1 MARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRR 80 (260)
T ss_dssp -CCSCCCCCBGGGSCGGGTCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECC
T ss_pred CCCCccccccceeCCccceeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecCCCCcccCC
Q 024598 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND 158 (265)
Q Consensus 79 d~~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~D 158 (265)
|++|||||||||||++++|+||++||++|+|.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+||
T Consensus 81 D~~~PvG~MDVIsI~kt~e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~D 160 (260)
T 2xzm_W 81 DKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGD 160 (260)
T ss_dssp CTTCEECTTCEEEEGGGTEEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTB
T ss_pred cCCCCCcEEEEEeEcCCCCEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceeeC
Q 024598 159 TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 238 (265)
Q Consensus 159 tv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~isl 238 (265)
||+||||++||+|||||++||+||||||+|+||+|+|++++++++|+|+|||+|++|++|+|+++||||||++++|||||
T Consensus 161 tv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Isl 240 (260)
T 2xzm_W 161 TLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIEL 240 (260)
T ss_dssp EEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCC
T ss_pred eEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877999999
Q ss_pred CCCcceeeehHHHHHHHHH
Q 024598 239 PKGKGIKLSIIEEARKRQA 257 (265)
Q Consensus 239 p~~~gi~~~~~~~~~~~~~ 257 (265)
|+++|||||++|||+++++
T Consensus 241 p~~kgi~l~i~eer~~~~~ 259 (260)
T 2xzm_W 241 PSGDGVRETILEERKRKFS 259 (260)
T ss_dssp SSSSSCCCCHHHHHHHHTC
T ss_pred CCCCCeecchhhhhhhhhc
Confidence 9999999999999999864
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.3e-110 Score=752.92 Aligned_cols=238 Identities=36% Similarity=0.576 Sum_probs=234.5
Q ss_pred CCC-CcccccccccCCCceecccccceeccCCCCCCCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecc
Q 024598 1 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTD 79 (265)
Q Consensus 1 Mar-G~~kHlKRl~AP~~W~i~kk~~~~a~kpspGPH~~~~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d 79 (265)
||| |||+|||||+||+||||+||+++|||+||||||+++|||||+||||||||||+|+|||||||+||+|+||||+|+|
T Consensus 1 Mar~g~kkHlKRl~AP~~W~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d 80 (243)
T 3j20_E 1 MARKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKD 80 (243)
T ss_dssp --CCSCCCCBCSTTSCTTSCCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCC
T ss_pred CCCcCcccccccccCCcccccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEecc
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeEEecccCcceeeeeecCCceEEEEeChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecC---CCCccc
Q 024598 80 KTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKA 156 (265)
Q Consensus 80 ~~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~---d~~ik~ 156 (265)
++|||||||||||++++|+||++||++|||++|||++|||+||||||++|+++++|+|||+|||||||+|| ||+||+
T Consensus 81 ~~ypvG~mDVIsI~kt~e~fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~ 160 (243)
T 3j20_E 81 YKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFT 160 (243)
T ss_dssp SSCEECTTCEEEETTTTEEEEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSS
T ss_pred ccCCcccceEEEecccCceeEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCce
Q 024598 157 NDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGTKPW 235 (265)
Q Consensus 157 ~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s-~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~ 235 (265)
||||+||||++||+||||||+||+||||||+|+|++|+|++|++|++| +|+|||+|++|++|+|+++||||||+ ++||
T Consensus 161 ~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~ 239 (243)
T 3j20_E 161 SYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPK 239 (243)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSC
T ss_pred CCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCcc
Confidence 999999999999999999999999999999999999999999999988 99999999999999999999999998 9999
Q ss_pred eeCC
Q 024598 236 VSLP 239 (265)
Q Consensus 236 islp 239 (265)
||||
T Consensus 240 islp 243 (243)
T 3j20_E 240 ISLP 243 (243)
T ss_dssp CSCC
T ss_pred ccCC
Confidence 9998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=1e-84 Score=577.80 Aligned_cols=203 Identities=33% Similarity=0.474 Sum_probs=189.8
Q ss_pred CCCCcccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeeecCCceEEEEe
Q 024598 35 PHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSI 114 (265)
Q Consensus 35 PH~~~~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~I 114 (265)
-|+++|||||++|||||||||+|+|||||||+||+|+||||+|+|++||||||||||| ++|+||++||++|||++|||
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecCCCCcccCCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEE
Q 024598 115 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGI 194 (265)
Q Consensus 115 ~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~ 194 (265)
++|||+||||||++|++++||+|||+|||||||+||||+||+||||+||||++||+|||||++||+||||||+|+||+|+
T Consensus 79 ~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~ 158 (213)
T 3kbg_A 79 TKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGT 158 (213)
T ss_dssp CTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEE
T ss_pred ChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceeeCCCCcce
Q 024598 195 IKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGI 244 (265)
Q Consensus 195 I~~i~~~~~s-~~~v~i~d~~g~~F~T~~~~vfvIG~~~~p~islp~~~gi 244 (265)
|++|++++|| +|+|+++ ++|+|+++||||||+ ++|||.++.+.=|
T Consensus 159 I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 159 ISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp EEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred EEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 9999999999 5999997 679999999999998 7999976655433
No 6
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=5.3e-07 Score=66.84 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=40.9
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCc--ceeEEecc
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF--MDVVSIPK 94 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~--mDVIsI~k 94 (265)
++|+|.|+++|++++.+|+|.|||++++.|+|.|.. .|.|++.+
T Consensus 16 ~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 16 KLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp HTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred HhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 479999999999999999999999999999999988 78888655
No 7
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.01 E-value=4.8e-06 Score=73.18 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=43.1
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCc
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNE 97 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e 97 (265)
++|+|.|+.+|++++.+|+|+|||+++++++|.|...|+|++.....
T Consensus 97 r~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~~~r 143 (201)
T 3bbn_D 97 RLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQK 143 (201)
T ss_dssp TTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTT
T ss_pred HcCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEccccc
Confidence 45889999999999999999999999999999999999999986443
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.90 E-value=5.9e-06 Score=71.59 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=41.7
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcc--eeEEeccc
Q 024598 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM--DVVSIPKT 95 (265)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~m--DVIsI~kt 95 (265)
+|||.|+++|++++.||+|.|||+++++|+|.|... |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 699999999999999999999999999999999998 99999653
No 9
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=97.87 E-value=4.3e-06 Score=73.44 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=41.9
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcc--eeEEecccC
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM--DVVSIPKTN 96 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~m--DVIsI~kt~ 96 (265)
++|||.|..+|++++.||+|.|||+++++|+|.|... |.|++....
T Consensus 115 r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~s 162 (197)
T 3u5c_J 115 KLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 162 (197)
T ss_dssp HSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSS
T ss_pred HccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCCC
Confidence 4799999999999999999999999999999999998 688887643
No 10
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=97.81 E-value=2.1e-05 Score=66.29 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024598 44 LILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (265)
Q Consensus 44 L~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~k 94 (265)
|--+|. ++|+|.|+++|++++.+|+|+|||+++++++|.|...|+|+|..
T Consensus 53 LD~~L~-~~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 53 LDNLVY-RLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHH-HTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHH-HcCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 344454 35899999999999999999999999999999999999999975
No 11
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.76 E-value=8.8e-06 Score=71.77 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=52.5
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeee---e-cCCceEEEEeChhhhc
Q 024598 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLY---D-TKGRFRLHSIRDEEAK 120 (265)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~---d-~kgrf~~~~I~~eea~ 120 (265)
+++|.|+++|++++.+|+|+|||+++++++|.|...|+|+|.......-++- + ...+-+|.|++-+.++
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~ 176 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 176 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCSSSCSCHHHHHHHHHHTTSCCCSSCCBCSSS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecCchhhHHHHHHHHHhcccCCCCCeEEEEccc
Confidence 5889999999999999999999999999999999999999987544322221 1 1223356677655554
No 12
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.76 E-value=2.7e-05 Score=68.53 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=41.5
Q ss_pred hccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEeccc
Q 024598 52 LKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKT 95 (265)
Q Consensus 52 Lg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt 95 (265)
+++|.|+++|++++.+|+|+|||+++++++|.|...|+|+|...
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK 151 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcCc
Confidence 57899999999999999999999999999999999999999763
No 13
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.69 E-value=1.4e-05 Score=59.38 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=47.7
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024598 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (265)
Q Consensus 42 lPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~k 94 (265)
+-|--+|.+. |++.+++||++++.+|.|+|||++++++.+.+...|+|++..
T Consensus 21 ~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~ 72 (79)
T 1p9k_A 21 VELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG 72 (79)
T ss_dssp CCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred chHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEECC
Confidence 6788888875 999999999999999999999999999999999999999953
No 14
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=97.69 E-value=1.8e-05 Score=68.51 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=39.7
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcce--eEEecc
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD--VVSIPK 94 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mD--VIsI~k 94 (265)
++|+|.|+++|++++.+|+|.|||+++++|+|.|...| .|++..
T Consensus 115 ~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~~ 160 (181)
T 2xzm_D 115 KLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFAS 160 (181)
T ss_dssp HTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECTT
T ss_pred hccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEeC
Confidence 47999999999999999999999999999999998887 577643
No 15
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.50 E-value=2.9e-06 Score=74.44 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=40.6
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEec
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 93 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~ 93 (265)
++|||.|+++|++++.||+|.|||+++++|+|.|...|++.|.
T Consensus 117 r~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 117 KAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred hccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 3699999999999999999999999999999999999998885
No 16
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=97.10 E-value=0.0012 Score=54.02 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=49.7
Q ss_pred cccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceee
Q 024598 39 RECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRL 101 (265)
Q Consensus 39 ~~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~ 101 (265)
.+++-|--||... ++..|+..|++++.+|+|+|||+++ .+++.|..+|+|+|...++.|.+
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~ 66 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTV 66 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeE
Confidence 3467788888864 3456999999999999999999997 89999999999999765554433
No 17
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=96.63 E-value=0.00049 Score=52.03 Aligned_cols=54 Identities=7% Similarity=-0.050 Sum_probs=42.7
Q ss_pred HHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcce
Q 024598 44 LILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENF 99 (265)
Q Consensus 44 L~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~y 99 (265)
|--+|.. ++++.++..|++++.+|.|+|||+++ .++|.+...|+|+|...++.+
T Consensus 3 LD~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 3 IDKFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HHHHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred HHHHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 3345555 45666777799999999999999998 899999999999997644443
No 18
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.62 E-value=0.0037 Score=54.49 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=45.9
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~k 94 (265)
++-|--+|... + ..++++|++++.+|.|+|||++++++++++...|+|++..
T Consensus 3 ~~RLd~~L~~~-~-~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 54 (234)
T 1ksk_A 3 HMRLDKFIAQQ-L-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG 54 (234)
T ss_dssp CEEHHHHHHHH-H-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETT
T ss_pred cccHHHHHHHc-C-CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEeC
Confidence 55677788876 3 6799999999999999999999999999999999999964
No 19
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=96.45 E-value=0.0051 Score=54.05 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=45.0
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024598 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (265)
Q Consensus 42 lPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~k 94 (265)
+-|--+|... + ..++++|++++.+|.|+|||+++++++|++...|+|++..
T Consensus 3 ~RLd~~L~~~-~-~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 53 (243)
T 1vio_A 3 LRLDKFIAEN-V-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 53 (243)
T ss_dssp EEHHHHHHHH-H-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred ccHHHHHHHc-C-CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEec
Confidence 4566788876 3 6799999999999999999999999999999999999964
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=96.03 E-value=0.011 Score=54.13 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=52.8
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc--------cCcceeeeeecCC
Q 024598 40 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKG 107 (265)
Q Consensus 40 ~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~k--------t~e~yR~l~d~kg 107 (265)
+++-|--||.+. +++ ++++|++++.+|.|+|||+++ ++.+.|-..|+|++.. .++.|-++.-+.|
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G 77 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVG 77 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTT
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCc
Confidence 467788899886 665 999999999999999999999 8999999999999863 2345555555555
No 21
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=95.89 E-value=0.0046 Score=56.59 Aligned_cols=51 Identities=6% Similarity=-0.175 Sum_probs=44.8
Q ss_pred hHHHHHHhhhccccCHHHHHHHHhCceEEECC-E-EecccCCCCCcceeEEecc
Q 024598 43 PLILILRNRLKYALTYREVIAILMQRHVLVDA-K-VRTDKTYPAGFMDVVSIPK 94 (265)
Q Consensus 43 PL~i~LRdrLg~A~t~rEar~Il~~g~V~VDG-k-vr~d~~ypVG~mDVIsI~k 94 (265)
-|-.+|-. .+++.|+.+|++++++|.|+||| + +++.+++.|...|.|++..
T Consensus 8 RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 8 RVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 45556654 48899999999999999999999 8 8999999999999999974
No 22
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=95.25 E-value=0.0077 Score=55.19 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=0.0
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEec
Q 024598 40 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 93 (265)
Q Consensus 40 ~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~ 93 (265)
.++.|--+|...+ ...++++|++++.+|.|+|||+++..+++.+...|+|++.
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3566777887654 3578999999999999999999988999999999999996
No 23
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=94.60 E-value=0.06 Score=39.91 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=35.6
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeece
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 224 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~ 224 (265)
|++|+.+-|++|+|.|+.|.|..++.. -++.+-|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d----~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN----FVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS----CEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC----EEEEEeCCCCCEEEEEhHH
Confidence 789999999999999999999999631 2444667777777655444
No 24
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=94.13 E-value=0.11 Score=50.23 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=48.1
Q ss_pred hHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeeecCCceEEEE
Q 024598 43 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS 113 (265)
Q Consensus 43 PL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~ 113 (265)
+++=+|. ..|+|.+..|||+.+.+|-|.|||.+++|+.+.+...|.+ +..|-++--.|.+|....
T Consensus 357 ~~~~ll~-~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v~ 421 (432)
T 2jan_A 357 GIVDLLV-ASGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGVE 421 (432)
T ss_dssp SHHHHHH-HHTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEEE
T ss_pred hHHHHHH-HhCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEEE
Confidence 5666666 4799999999999999999999999999999888665543 224444544445454433
No 25
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=93.96 E-value=0.11 Score=42.32 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=31.9
Q ss_pred CCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 157 NDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 157 ~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
++.| .+....+-..+| +.|+.+||+.|.+.|.+|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4554 444445555666 8999999999999999999999954
No 26
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=93.25 E-value=0.095 Score=44.65 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred hHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeE-E----------ecc---cCcceeeeeecCCc
Q 024598 43 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVV-S----------IPK---TNENFRLLYDTKGR 108 (265)
Q Consensus 43 PL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVI-s----------I~k---t~e~yR~l~d~kgr 108 (265)
+|+=+|- ..|+|.+.+|||+.+.+|-|+|||.++.+..-+.++||.- + +.. .+..|-+|---|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 4444454 4799999999999999999999998887744466666541 1 111 24556666666666
Q ss_pred eEEEEeChhh
Q 024598 109 FRLHSIRDEE 118 (265)
Q Consensus 109 f~~~~I~~ee 118 (265)
|.++.+..||
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 6666655444
No 27
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.11 E-value=0.1 Score=50.17 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=38.9
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCc
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGF 86 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~ 86 (265)
.++++=+|.. .|+|.+..|||+.+.+|-|.|||.+++|+.+.+..
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~ 412 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDL 412 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEEC
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceecC
Confidence 4567777774 79999999999999999999999999999876543
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.33 E-value=0.037 Score=53.03 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=0.0
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeE
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVV 90 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVI 90 (265)
.++|.=+|. ..|+|.+..|||+.+.+|-|+|||.+++|+.+.+...|.+
T Consensus 352 ~i~l~~lL~-~agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLI-ETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp --------------------------------------------------
T ss_pred cccHHHHHH-HcCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 456777776 4799999999999999999999999999999887766654
No 29
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=88.22 E-value=0.092 Score=50.39 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred chHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCccee
Q 024598 42 LPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDV 89 (265)
Q Consensus 42 lPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDV 89 (265)
++++=+|. ..|+|.+..|||+.+.+|-|+|||.+++|+.+.+...|.
T Consensus 352 ~~~~~~l~-~~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~ 398 (419)
T 2ts1_A 352 VPLVELLV-SAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHR 398 (419)
T ss_dssp ------------------------------------------------
T ss_pred ccHHHHHH-HhCCCCCHHHHHHHHHhCCEEECCEEecCcccccChhhc
Confidence 45666666 479999999999999999999999999999987765444
No 30
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=82.96 E-value=1.4 Score=35.56 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=40.8
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC-----CCCeEeE--eeceEEEEc
Q 024598 171 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFAT--RLGNVFTIG 229 (265)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~-----~g~~F~T--~~~~vfvIG 229 (265)
..+++..|+.++|+.|..-|..|+|..+.. ..+.|+|+.- +|.+++- ..+||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457888999999999999999999999853 3356666554 3444443 357777665
No 31
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=81.53 E-value=2.1 Score=34.97 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=39.3
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 024598 171 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 229 (265)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F~--T~~~~vfvIG 229 (265)
-.++...|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ .-.+||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRL---KFAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGG---GTEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECC---CCEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 3578889999999999999999999998543 23555543 4554433 3346666554
No 32
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.60 E-value=2.4 Score=34.24 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=38.2
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE-----cCCCCeEe--EeeceEEEEc
Q 024598 171 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ-----DALGHEFA--TRLGNVFTIG 229 (265)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~-----d~~g~~F~--T~~~~vfvIG 229 (265)
..+++..|+.++|+.|+.-|..|+|..+... .+.|+|+ ..+|.+.+ ...+||+++-
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~ 104 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEGATLRKTNGTEVFYPIHPSNVMIIE 104 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeCeEEEecCCcEEEcccCHHHeEEEc
Confidence 3578889999999999999999999998532 2455554 34443322 2335665554
No 33
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=78.19 E-value=5 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=25.4
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
+.|++|+.+.|+.|.-.|..|+|.++..
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~ 30 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINP 30 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEET
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcC
Confidence 4688999999999999999999999853
No 34
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=75.75 E-value=4 Score=34.26 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=47.1
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEE-----cCCCCeEe--EeeceEEEEccCCCceeeCCCCcc
Q 024598 171 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQ-----DALGHEFA--TRLGNVFTIGKGTKPWVSLPKGKG 243 (265)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~-----d~~g~~F~--T~~~~vfvIG~~~~p~islp~~~g 243 (265)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+|+ ..+|.+.+ .-.+||+++-- .+ ++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~------k~--dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL------KL--DK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC------CC--CS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc------cC--Ch-
Confidence 3578889999999999999999999998542 2344443 35565433 33467766653 12 23
Q ss_pred eeeehHHHHHH
Q 024598 244 IKLSIIEEARK 254 (265)
Q Consensus 244 i~~~~~~~~~~ 254 (265)
-|..++|.+.+
T Consensus 113 ~R~~~lerk~~ 123 (150)
T 3iz5_Y 113 DRKAILDRKAS 123 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccchh
Confidence 55666666553
No 35
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=67.98 E-value=4.4 Score=31.76 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.6
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 174 KFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
++..|+.++|+.|+.-|..|+|.++..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 29 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLS 29 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEe
Confidence 456799999999999999999999854
No 36
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=67.79 E-value=6.5 Score=32.39 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=38.1
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 024598 171 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 229 (265)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F~--T~~~~vfvIG 229 (265)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ .-.+||+++-
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 107 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRK---KWAIHVEKISKNKLNGAPYQIPLSASQLVLTK 107 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETTCCEEETTTEEECCCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcC---CCEEEEeCeEEEcCCCCEEEcccchHHEEEEc
Confidence 3567888999999999999999999998532 23455433 4553322 2345666555
No 37
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=67.11 E-value=3.3 Score=32.92 Aligned_cols=28 Identities=32% Similarity=0.631 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
+++..|+.+.|+.|+.-|..|+|.++..
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 32 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLP 32 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEEC
Confidence 4567899999999999999999999864
No 38
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=66.31 E-value=4.5 Score=32.99 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=27.2
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI 210 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i 210 (265)
.|+|-.|++..|.++|+.++|++|..+ +.|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999654 45555
No 39
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=66.07 E-value=6.9 Score=30.28 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred CcEEEEECCCcceeEEEEEeEEE
Q 024598 178 GNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 178 G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999864
No 40
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=65.42 E-value=4.4 Score=32.34 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=29.0
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 024598 174 KFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 212 (265)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d 212 (265)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|+++.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 678899999999999999999999853 234555554
No 41
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=62.04 E-value=4.1 Score=33.93 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.1
Q ss_pred EEEeeCCcEEEEECCCcceeE-EEEEeEEEecCCccEEEEEcCC-----CCeEeE--eeceEEEEc
Q 024598 172 FIKFDVGNVVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFAT--RLGNVFTIG 229 (265)
Q Consensus 172 ~i~f~~G~~~~v~gG~n~G~v-G~I~~i~~~~~s~~~v~i~d~~-----g~~F~T--~~~~vfvIG 229 (265)
.+++..|+.+.|+.|+.-|.. |+|..+.. ..+.|+|+.-+ |.+++- ..+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~---k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYR---KKYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEET---TTTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEEC---CCCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 357888999999999999999 99999853 23455555433 433332 246776665
No 42
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=56.10 E-value=6.1 Score=32.50 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
.|+|-+|++..|++.|+..+|.+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999954
No 43
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=55.03 E-value=27 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=21.7
Q ss_pred CCcccCCeEEEecCCCceeeEEEeeCCcEEE
Q 024598 152 PLIKANDTIKLDLETNKITEFIKFDVGNVVM 182 (265)
Q Consensus 152 ~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~ 182 (265)
..+++|++|-++-.+..|++.+|++.+..+.
T Consensus 73 ~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~ 103 (109)
T 2wg5_A 73 EELKPGARVALNQQTLAIVNVLPTSKDPMVY 103 (109)
T ss_dssp TTCCTTCEEEEETTTCCEEEEEC--------
T ss_pred HHCCCCCEEEECCcceEeEEeCCCCcCccch
Confidence 3699999999999999999999999987654
No 44
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.64 E-value=5.2 Score=27.93 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=24.9
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNRE 199 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (265)
+.|++|+.+-|+.|.=.|..|+|.++.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 458999999999999999999999985
No 45
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=53.71 E-value=39 Score=26.56 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=51.4
Q ss_pred ceEEECCEEecccCCCCCcceeEEecccCcceeeee-ecCCceEE-EEeChhhh------c---ceeEEEEEEEEeeCCc
Q 024598 68 RHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKGRFRL-HSIRDEEA------K---FKLCKVRSVQFGQKGI 136 (265)
Q Consensus 68 g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~-d~kgrf~~-~~I~~eea------~---~KLcKV~~k~~~~~g~ 136 (265)
+.+.+||..++-.+ =++=|.++.+...++.... |..|.+.. .|.+.+++ . -.++||.+.-..-+|.
T Consensus 27 ~~f~i~g~~i~~V~---iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 27 AEFILDGAELGQLT---FVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCCBSSSSBCCEEE---EEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEE---EEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCE
Confidence 67888987776665 2334677777666666666 88887754 46654432 1 3689999988888999
Q ss_pred eEEEccCCeee
Q 024598 137 PYINTYDGRTI 147 (265)
Q Consensus 137 ~ql~~hDGrni 147 (265)
+||+.+.=|.+
T Consensus 104 ~qi~~~~ir~v 114 (136)
T 4gop_B 104 RSISSGHMRPV 114 (136)
T ss_dssp EEEEESEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99988654443
No 46
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=51.74 E-value=88 Score=27.47 Aligned_cols=78 Identities=8% Similarity=-0.041 Sum_probs=55.0
Q ss_pred CceEEECCEEecccCCCCCcceeEEecccCcceeeee-ecCC-ce-EEEEeChhh-----h---cceeEEEEEEEEeeCC
Q 024598 67 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RF-RLHSIRDEE-----A---KFKLCKVRSVQFGQKG 135 (265)
Q Consensus 67 ~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~-d~kg-rf-~~~~I~~ee-----a---~~KLcKV~~k~~~~~g 135 (265)
++.+.+||+.+.-.+ -++=|.++.+...++.+.. |..| .+ +-.|.+.++ + .=.++||.+....-+|
T Consensus 61 d~~f~i~g~~i~~V~---ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g 137 (270)
T 2pi2_A 61 DEVFRIGNVEISQVT---IVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 137 (270)
T ss_dssp TTEEEETTEEESEEE---EEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEE---EEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCC
Confidence 468999998888765 3444777877777777777 7777 55 555765543 1 2368999998888899
Q ss_pred ceEEEccCCeee
Q 024598 136 IPYINTYDGRTI 147 (265)
Q Consensus 136 ~~ql~~hDGrni 147 (265)
.+||+.+.=|.+
T Consensus 138 ~~qi~i~~ir~v 149 (270)
T 2pi2_A 138 KKSLVAFKIMPL 149 (270)
T ss_dssp EEEEEEEEEEEC
T ss_pred eeEEEEEEEEec
Confidence 999998754444
No 47
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=48.47 E-value=11 Score=31.31 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.2
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEe
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKH 201 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~ 201 (265)
+++|..|+|..|+++|+-++|.++...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 578999999999999999999988653
No 48
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=47.96 E-value=9.7 Score=31.42 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=26.7
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI 210 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i 210 (265)
.++|-+|++..|+..|+..+|.+|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 468999999999999999999999542 45555
No 49
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.91 E-value=8.8 Score=28.85 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=23.0
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEE
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNRE 199 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (265)
+++|.+|++..|+..|+..+|.++.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~ii 28 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDII 28 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEEC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEc
Confidence 6789999999999999999999874
No 50
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=46.26 E-value=11 Score=28.91 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=34.4
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCC----CCeEeEeeceEEEEc
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAL----GHEFATRLGNVFTIG 229 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~----g~~F~T~~~~vfvIG 229 (265)
+++|-+|++..|++.|+..+|.++.. + +.|.+-|.. ...-.....++....
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD--~--~~vLV~gp~~~~~~~rk~~n~khl~~T~ 58 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID--D--NFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS--S--SCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC--C--CEEEEECCcccCCcCCEEEchHHEEEee
Confidence 57899999999999999999998842 1 345554443 122344555555554
No 51
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=43.05 E-value=53 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=19.6
Q ss_pred eEEECCEEecccCCCCCcceeEEe
Q 024598 69 HVLVDAKVRTDKTYPAGFMDVVSI 92 (265)
Q Consensus 69 ~V~VDGkvr~d~~ypVG~mDVIsI 92 (265)
.|.|||+.+. ...++.=.|.|.|
T Consensus 52 ~v~vN~~~v~-~~~~l~~gD~V~i 74 (81)
T 1fm0_D 52 LAAVNQTLVS-FDHPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEECC-TTCBCCTTCEEEE
T ss_pred EEEECCEECC-CCCCCCCCCEEEE
Confidence 5999999885 5778988998887
No 52
>2laq_A Accessory gland-specific peptide 70A; hydroxiproline rich, signaling protein; HET: HYP; NMR {Drosophila melanogaster}
Probab=39.75 E-value=14 Score=23.69 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=13.0
Q ss_pred ceecccccceeccCCCCCCCC
Q 024598 17 HWMLDKLGGAFAPKPSSGPHK 37 (265)
Q Consensus 17 ~W~i~kk~~~~a~kpspGPH~ 37 (265)
+|+..|+..+| |-|||.+
T Consensus 2 ~wp~~~~~~~~---~ip~p~~ 19 (36)
T 2laq_A 2 EWPWNRKPTKF---PIPSPNP 19 (36)
T ss_dssp CSCCCSCCCSC---SSSSCST
T ss_pred CCcccCcCCCC---cCCCCcc
Confidence 69999999888 3445444
No 53
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=39.28 E-value=16 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=26.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEe
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNREKH 201 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~~ 201 (265)
..|++|+.+-|+.|.-.|..|+|.++...
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 46899999999999999999999999643
No 54
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=37.81 E-value=48 Score=23.20 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=23.6
Q ss_pred hCceEEECCEEecccCCCCCcceeEEec
Q 024598 66 MQRHVLVDAKVRTDKTYPAGFMDVVSIP 93 (265)
Q Consensus 66 ~~g~V~VDGkvr~d~~ypVG~mDVIsI~ 93 (265)
..-.|.|||..+.+...++.=.|.|+|=
T Consensus 41 ~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 41 GVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp TTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred hccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 4457999999977889999999999873
No 55
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=36.80 E-value=1.5e+02 Score=23.01 Aligned_cols=78 Identities=8% Similarity=-0.023 Sum_probs=52.6
Q ss_pred CceEEECCEEecccCCCCCcceeEEecccCcceeeee-ecCC-ceE-EEEeChhhh-----c---ceeEEEEEEEEeeCC
Q 024598 67 QRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RFR-LHSIRDEEA-----K---FKLCKVRSVQFGQKG 135 (265)
Q Consensus 67 ~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~-d~kg-rf~-~~~I~~eea-----~---~KLcKV~~k~~~~~g 135 (265)
++.+.+||..++-.++ ++=|.++.+...++.... |..| .+. -.|.+.+++ . -..+||.+....-+|
T Consensus 21 ~~~f~i~g~~i~~V~i---VG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI---VGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE---EEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE---EEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 5678999998887763 333777777666666666 8889 664 446554432 2 368999998888899
Q ss_pred ceEEEccCCeee
Q 024598 136 IPYINTYDGRTI 147 (265)
Q Consensus 136 ~~ql~~hDGrni 147 (265)
..||+.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988644443
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.77 E-value=55 Score=29.43 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCcccCCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 024598 152 PLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 217 (265)
Q Consensus 152 ~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~ 217 (265)
..+++|++|.++ ++..|++..+|+. +|.+-++.|+- .+ .+.+.|.+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCCce
Confidence 379999999996 8999999999987 46677776663 11 1233345555544
No 57
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=34.40 E-value=38 Score=27.86 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=26.1
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 172 FIKFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 172 ~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
...|++|+.+.|+.|.=.|..|+|.++..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 34789999999999999999999999864
No 58
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=33.34 E-value=50 Score=24.63 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=21.2
Q ss_pred eEEECCEEec---ccCCCCCcceeEEec
Q 024598 69 HVLVDAKVRT---DKTYPAGFMDVVSIP 93 (265)
Q Consensus 69 ~V~VDGkvr~---d~~ypVG~mDVIsI~ 93 (265)
.|.|||+.+. +..+++.=.|.|+|=
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 6999999885 678899999999873
No 59
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=31.84 E-value=70 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=20.6
Q ss_pred ceEEECCEEecccCCCCCcceeEEe
Q 024598 68 RHVLVDAKVRTDKTYPAGFMDVVSI 92 (265)
Q Consensus 68 g~V~VDGkvr~d~~ypVG~mDVIsI 92 (265)
-.|.|||+.+.. .+++.=.|.|.|
T Consensus 59 ~~v~VN~~~v~~-~~~l~~gDeV~i 82 (89)
T 3po0_A 59 INVLRNGEAAAL-GEATAAGDELAL 82 (89)
T ss_dssp SEEEETTEECCT-TSBCCTTCEEEE
T ss_pred EEEEECCEECCC-CcccCCCCEEEE
Confidence 479999999975 789999999887
No 60
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=31.49 E-value=20 Score=29.90 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=39.7
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCc---ceeEEecc
Q 024598 40 ECLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGF---MDVVSIPK 94 (265)
Q Consensus 40 ~slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~---mDVIsI~k 94 (265)
...+|+=+||+.|++-.+ |.=+.+| .|+|||+.+..-..|+.- .+|++|.-
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEg 79 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEG 79 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGG
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCC
Confidence 367899999999887544 3336666 799999999999999874 46788865
No 61
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=30.63 E-value=2.3e+02 Score=24.70 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=38.9
Q ss_pred EEEEeChhhhcceeEEEEEEEEeeCCce-----EEEccCCeeeecCCCCcccCCeEEEecCCCceeeEEEee
Q 024598 110 RLHSIRDEEAKFKLCKVRSVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFD 176 (265)
Q Consensus 110 ~~~~I~~eea~~KLcKV~~k~~~~~g~~-----ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~i~f~ 176 (265)
.++.|+++. ++..+ .+.++.+|.| .+.+.||+= |. +....++..+||..+++++..|++.
T Consensus 127 ~l~viD~~t--~~v~~--~I~Vg~~~~p~~~~nele~~dg~l--yv-n~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 127 ILYEIDPHT--FKLIK--KHNVKYNGHRVIRLNELEYINGEV--WA-NIWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEEECTTT--CCEEE--EEECEETTEECCCEEEEEEETTEE--EE-EETTSSEEEEEETTTCCEEEEEECH
T ss_pred eEEEEECCC--CcEEE--EEEECCCCcccccceeEEEECCEE--EE-ecCCCCeEEEEECCCCcEEEEEECC
Confidence 456677643 34433 3444555555 345568853 32 2356788999999999999999985
No 62
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=27.85 E-value=81 Score=24.39 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCeEeEeeceEEEEc
Q 024598 205 FETIHIQDALGHEFATRLGNVFTIG 229 (265)
Q Consensus 205 ~~~v~i~d~~g~~F~T~~~~vfvIG 229 (265)
..++.|+..+|.+..+-.+.-|...
T Consensus 54 ~~~~~i~t~~G~~i~~T~~H~~~t~ 78 (139)
T 2in0_A 54 RDVIGLRIAGGAILWATPDHKVLTE 78 (139)
T ss_dssp EEEEEEEETTSCEEEECTTCEEEET
T ss_pred cEEEEEEeCCCCEEEecCCCeEEec
Confidence 3577777777777766666666644
No 63
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=27.84 E-value=1.8e+02 Score=23.73 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=28.6
Q ss_pred eeEEEEE----EEEeeCCceEEEccCCeeeecCCCCcccCCeEEEe
Q 024598 122 KLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 163 (265)
Q Consensus 122 KLcKV~~----k~~~~~g~~ql~~hDGrni~~~d~~ik~~Dtv~i~ 163 (265)
++.+|+- .-+++..+|.+...+|.-.-..-.++++||.|.+-
T Consensus 75 ~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 75 HLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp CEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred eEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 4666643 44577788888888776443344579999988863
No 64
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=26.10 E-value=54 Score=23.96 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=32.2
Q ss_pred ceeeeeecCCceEEEEeChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecCCCCcc
Q 024598 98 NFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIK 155 (265)
Q Consensus 98 ~yR~l~d~kgrf~~~~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~d~~ik 155 (265)
..|..-|..|.|.+ ||.| + -+++|+++|.--||..|-+|-....
T Consensus 4 k~RtWtDrtG~F~V------eA~f--l------g~~dgki~LhK~nGv~I~VP~~klS 47 (68)
T 2hbp_A 4 KSRLWVDRSGTFKV------DAEF--I------GCAKGKIHLHKANGVKIAVAADKLS 47 (68)
T ss_dssp CSEEEEBSSSCCEE------EEEE--E------EEETTEEEEECTTSCEEEEETTSBC
T ss_pred cccEEEcCCCCeEE------EEEE--E------EEeCCEEEEEecCCcEEEeEhHHcC
Confidence 35777788898866 6643 2 2458999999999999987754443
No 65
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=25.48 E-value=1.3e+02 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=25.8
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCc
Q 024598 40 ECLPLILILRNRLKYALTYREVIAILMQR 68 (265)
Q Consensus 40 ~slPL~i~LRdrLg~A~t~rEar~Il~~g 68 (265)
..+|...++|..|. +.|.+||.+++.+-
T Consensus 177 ~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 177 TGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 57999999999999 99999999999853
No 66
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=25.46 E-value=2.2e+02 Score=21.45 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=37.1
Q ss_pred ecCCceEEEEeChhh-hc---ceeEEEEE-EEEeeCCceEEEccCCeeeecCCCCccc
Q 024598 104 DTKGRFRLHSIRDEE-AK---FKLCKVRS-VQFGQKGIPYINTYDGRTIRYPDPLIKA 156 (265)
Q Consensus 104 d~kgrf~~~~I~~ee-a~---~KLcKV~~-k~~~~~g~~ql~~hDGrni~~~d~~ik~ 156 (265)
|..|++.+.-=+.+. .. =..++|++ +...-+|.+||++...++|...|+.+.+
T Consensus 43 DeTG~I~~t~W~~~~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~~~~ 100 (109)
T 2kbn_A 43 DETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEPIEV 100 (109)
T ss_dssp CTTCCEEEEEEGGGCCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSCCCC
T ss_pred CCCCeEEEEEECcccccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCcccc
Confidence 888988765444221 11 25788885 6667789999999999999765655544
No 67
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=23.50 E-value=89 Score=22.10 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=21.5
Q ss_pred ceEEECCEEec---ccCCCCCcceeEEec
Q 024598 68 RHVLVDAKVRT---DKTYPAGFMDVVSIP 93 (265)
Q Consensus 68 g~V~VDGkvr~---d~~ypVG~mDVIsI~ 93 (265)
=.|.|||+.+. ....++.=.|.|+|-
T Consensus 56 v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 56 VIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp CEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred eEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 36999999887 477889999999873
No 68
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=23.30 E-value=49 Score=24.91 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.2
Q ss_pred eecCCCCcccCCeEEEe
Q 024598 147 IRYPDPLIKANDTIKLD 163 (265)
Q Consensus 147 i~~~d~~ik~~Dtv~i~ 163 (265)
||..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46678889999987753
No 69
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=22.47 E-value=32 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.9
Q ss_pred cccchHHHHHHhhhcccc-CHHHHHHHHhCceE
Q 024598 39 RECLPLILILRNRLKYAL-TYREVIAILMQRHV 70 (265)
Q Consensus 39 ~~slPL~i~LRdrLg~A~-t~rEar~Il~~g~V 70 (265)
.|.|||.+++ |++|. +..||.+-+.+|.-
T Consensus 24 WEmMpLMYVI---LK~A~~d~eeAsrrI~Eg~~ 53 (65)
T 1zv1_A 24 WELMPLMYVI---LKDADANIEEASRRIEEGQY 53 (65)
T ss_dssp GGGHHHHHHH---HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHH---HhccCCCHHHHHHHHHHHHH
Confidence 3799999984 88996 77888887777653
No 70
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.50 E-value=1e+02 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=21.2
Q ss_pred eEEECCEEecc---cCCCCCcceeEEec
Q 024598 69 HVLVDAKVRTD---KTYPAGFMDVVSIP 93 (265)
Q Consensus 69 ~V~VDGkvr~d---~~ypVG~mDVIsI~ 93 (265)
.|.|||..+.. ..+|+.=.|.|.|=
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 69999999885 67899999998873
No 71
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=21.11 E-value=3.5e+02 Score=22.84 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=43.5
Q ss_pred CCCcccCCeEEE-ecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEE-EE
Q 024598 151 DPLIKANDTIKL-DLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVF-TI 228 (265)
Q Consensus 151 d~~ik~~Dtv~i-~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vf-vI 228 (265)
+..+++|+++-+ ++|.|.++-.|.+.+|+=+-+. +.+|..++|... .+.+ ++|+=.+|+.. .+.++++ .|
T Consensus 61 ~a~i~~GN~lpL~~iP~Gt~I~NIE~~pG~gg~la--RsAGt~a~ii~k---e~~~--~~vrLPSGe~r-~v~~~c~AtI 132 (178)
T 1giy_D 61 DADIKIGNALPLENIPVGTLVHNIELKPGRGGQLV--RAAGTSAQVLGK---EGKY--VIVRLASGEVR-MILGKCRATV 132 (178)
T ss_pred CCccccCCCcccccCCCCCEEEeEeccCCCCeEEE--EeCCCeEEEEEe---cCCe--EEEECCCCCEE-EEcccCcEEE
Confidence 445788887755 6889999999999998733222 356777776664 2333 34444666643 3333333 35
Q ss_pred c
Q 024598 229 G 229 (265)
Q Consensus 229 G 229 (265)
|
T Consensus 133 G 133 (178)
T 1giy_D 133 G 133 (178)
T ss_pred E
Confidence 5
Done!