Query 024598
Match_columns 265
No_of_seqs 134 out of 392
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 11:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024598.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024598hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c06a_ d.66.1.2 (A:) Ribosoma 99.1 2E-11 1.4E-15 102.1 3.1 70 51-120 59-130 (159)
2 d2uubd1 d.66.1.2 (D:2-209) Rib 98.9 1.6E-10 1.2E-14 100.1 1.7 70 51-120 106-179 (208)
3 d2gy9d1 d.66.1.2 (D:2-205) Rib 98.9 6.4E-10 4.6E-14 96.1 4.7 70 51-120 102-175 (204)
4 d1dm9a_ d.66.1.3 (A:) Heat sho 98.0 3.1E-06 2.3E-10 65.3 5.9 56 44-101 7-62 (104)
5 d1p9ka_ d.66.1.6 (A:) Hypothet 98.0 6E-07 4.4E-11 66.1 0.7 59 41-102 20-78 (79)
6 d1vioa2 d.66.1.5 (A:0-57) Pseu 98.0 4.2E-06 3.1E-10 57.7 5.0 50 43-94 3-52 (58)
7 d1kska3 d.66.1.5 (A:1-59) Pseu 97.9 6.2E-06 4.5E-10 57.0 5.2 47 45-93 4-50 (59)
8 d1h3fa2 d.66.1.4 (A:352-432) T 97.6 5E-05 3.6E-09 55.5 5.7 64 41-115 17-80 (81)
9 d1jh3a_ d.66.1.4 (A:) Tyrosyl- 97.4 0.00029 2.1E-08 52.9 7.9 66 40-111 30-95 (99)
10 d2do3a1 b.34.5.5 (A:462-523) T 95.2 0.012 8.6E-07 41.1 4.7 47 175-225 11-57 (62)
11 d1nz9a_ b.34.5.4 (A:) N-utiliz 85.5 0.2 1.5E-05 33.7 2.3 27 173-199 3-29 (58)
12 d1vqot1 b.34.5.1 (T:1-119) Rib 84.2 0.69 5E-05 35.5 5.1 56 171-229 38-100 (119)
13 d1nppa2 b.34.5.4 (A:191-248) N 81.3 0.59 4.3E-05 31.2 3.3 28 173-200 3-30 (58)
14 d2joya1 b.34.5.7 (A:1-96) Ribo 73.2 0.85 6.2E-05 33.7 2.3 51 175-229 4-58 (96)
15 d2zjrr1 b.34.5.1 (R:4-113) Rib 69.4 1.4 9.9E-05 33.3 2.8 27 173-199 11-37 (110)
16 d1rm6c2 d.15.4.2 (C:1-81) 4-hy 64.4 1.1 7.9E-05 31.9 1.2 44 41-88 21-69 (81)
17 d1t3qa2 d.15.4.2 (A:7-87) Quin 60.8 1.5 0.00011 31.2 1.4 44 41-88 22-70 (81)
18 d1vlba2 d.15.4.2 (A:1-80) Alde 60.2 1.6 0.00011 31.1 1.4 43 40-86 19-66 (80)
19 d2gycs1 b.34.5.1 (S:3-101) Rib 57.6 2.4 0.00017 31.2 2.1 26 174-199 1-26 (99)
20 d1ffva2 d.15.4.2 (A:3-81) Carb 56.6 1 7.4E-05 32.0 -0.2 44 41-88 20-68 (79)
21 d1dgja2 d.15.4.2 (A:1-80) Alde 48.8 3.1 0.00023 29.4 1.5 43 41-87 20-67 (80)
22 d1nxza1 b.122.1.2 (A:2-73) Hyp 48.1 2.7 0.00019 28.3 0.9 52 149-200 6-58 (72)
23 d1n62a2 d.15.4.2 (A:3-81) Carb 45.2 3.6 0.00026 29.0 1.3 44 41-88 20-68 (79)
24 d1ci3m2 b.84.2.2 (M:170-231) C 41.0 26 0.0019 22.7 5.3 29 191-219 7-35 (62)
25 d1ueba3 b.40.4.5 (A:127-184) E 37.2 21 0.0015 23.6 4.1 36 134-170 20-55 (58)
26 d2cqaa1 b.40.4.14 (A:8-89) Ruv 35.7 21 0.0015 25.2 4.2 35 136-170 29-72 (82)
27 d1jnya2 b.44.1.1 (A:323-429) E 31.4 77 0.0056 22.0 7.4 43 153-199 57-106 (107)
28 d1d2ea2 b.44.1.1 (A:349-451) E 31.3 31 0.0023 24.8 4.8 67 129-199 20-92 (103)
29 d1gd7a_ b.40.4.4 (A:) TRBP111 30.6 12 0.00086 27.0 2.2 16 191-206 13-28 (109)
30 d2j01y1 b.34.5.1 (Y:2-102) Rib 30.3 2.2 0.00016 31.5 -2.1 28 174-201 5-32 (101)
31 d2vv5a1 b.38.1.3 (A:113-179) M 24.7 35 0.0026 22.2 3.7 23 190-217 28-50 (67)
32 d1at0a_ b.86.1.1 (A:) Hedgehog 24.0 1.1E+02 0.0081 21.4 9.8 72 137-230 6-78 (145)
33 d1v8ca1 d.15.3.1 (A:1-87) MoaD 23.4 42 0.0031 22.5 4.0 24 69-92 54-80 (87)
34 d1mkha_ b.40.4.4 (A:) C-termin 21.5 49 0.0036 23.6 4.2 16 191-206 14-29 (107)
35 d1yfua1 b.82.1.20 (A:1-174) 3- 20.9 76 0.0055 25.0 5.6 93 113-207 13-120 (174)
36 d1vjka_ d.15.3.1 (A:) Molybdop 20.2 58 0.0042 21.5 4.2 23 69-92 61-83 (88)
No 1
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.07 E-value=2e-11 Score=102.08 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=54.6
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeee--cCCceEEEEeChhhhc
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYD--TKGRFRLHSIRDEEAK 120 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~d--~kgrf~~~~I~~eea~ 120 (265)
|+|||.|..+|||+++||||+|||+.++.|+|.+..+|+|++.+.......+.+ ......|.|++-+.++
T Consensus 59 r~gfa~t~~~arQ~v~Hghi~vNgk~v~iPSy~vk~GDvIsvkeksk~~~~v~~~~~~~~~~P~wL~vD~~~ 130 (159)
T d1c06a_ 59 RLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREKSRNLQVIKEALEANNYIPDYLSFDPEK 130 (159)
T ss_dssp HHTSSSSHHHHHHHHHTSCEEETTEECCCSSCCCCSSCEEEECGGGSSCHHHHHHTTCCCCCCSSEEEETTT
T ss_pred cCcccCCHHHHHHHHHhcceEccceEEEecceeecCCcEEeeccccchHHHHHHHHHccCCCCCEEEEEccc
Confidence 589999999999999999999999999999999999999999874433333321 1233456677655554
No 2
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=98.88 E-value=1.6e-10 Score=100.13 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=54.7
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccC---cceeeeee-cCCceEEEEeChhhhc
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTN---ENFRLLYD-TKGRFRLHSIRDEEAK 120 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~---e~yR~l~d-~kgrf~~~~I~~eea~ 120 (265)
|||||.|.++|||+++||||+|||+.++.|+|.|..+|+|++.+.. ..|.-..+ ...+-+|.|++-+.++
T Consensus 106 r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vreksk~~~~i~~~le~~~~~~~P~wLevd~~~ 179 (208)
T d2uubd1 106 RLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEG 179 (208)
T ss_dssp HTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHHHHHHHHTTCCCCTTEEEETTT
T ss_pred hccccccHHHHHHHHHhcCeecCCeEEEeccEEecCCceeehhhccchHHHHHHHHHhhccCCCCCCeEeeccc
Confidence 6899999999999999999999999999999999999999998733 33333332 2333456677655554
No 3
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}
Probab=98.86 E-value=6.4e-10 Score=96.09 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=55.4
Q ss_pred hhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCc---ceeeeee-cCCceEEEEeChhhhc
Q 024598 51 RLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNE---NFRLLYD-TKGRFRLHSIRDEEAK 120 (265)
Q Consensus 51 rLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e---~yR~l~d-~kgrf~~~~I~~eea~ 120 (265)
|||||.|..+|||+++||||+||||.++.|+|-+..+|+|++.+... .+.-..+ ...+-.|.|++-+.++
T Consensus 102 R~gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDvIsvkeksk~~~~i~~~~e~~~~~~~P~wLevd~~~ 175 (204)
T d2gy9d1 102 RMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 175 (204)
T ss_dssp HHTSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCBEEECTTGGGCHHHHHHHHHHTTCCCCTTEEEETTT
T ss_pred hccccccHHHHHHHHHhcceecCCEEEEeccEeecCCCEEEeccchhHHHHHHHHHHhcccCCCCCeEEEeccc
Confidence 58999999999999999999999999999999999999999998433 2333222 2334466777666654
No 4
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=98.03 E-value=3.1e-06 Score=65.32 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=47.0
Q ss_pred HHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceee
Q 024598 44 LILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRL 101 (265)
Q Consensus 44 L~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~ 101 (265)
|--||= ..+++.|+..|.++|.+|+|.|||++++ ++|.|..+|+|+|...+..+.+
T Consensus 7 lD~~L~-~~r~~ktR~~A~~~i~~G~V~vNg~~vK-ps~~vk~GDvI~i~~~~~~~~i 62 (104)
T d1dm9a_ 7 LDKWLW-AARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTV 62 (104)
T ss_dssp HHHHHH-HTTSSSSHHHHHHHHHTTCEEETTEECC-TTCBCCTTCEEEEEETTEEEEE
T ss_pred HHHHHH-HhhhHhhHHHHHHHHHcCCeeeCCeecc-ccccCCCCCEEEEEeCCeEEEE
Confidence 334442 4789999999999999999999999875 9999999999999886655544
No 5
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=97.97 E-value=6e-07 Score=66.13 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=51.5
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeee
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL 102 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l 102 (265)
.+-|.=||-. .|++.+++||++++.+|.|+|||+++++|.|.|...|+|+++ ++.++++
T Consensus 20 ~irL~k~L~~-~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vd--G~~i~iv 78 (79)
T d1p9ka_ 20 HVELCDLLKL-EGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA--GHSVQVV 78 (79)
T ss_dssp CCCHHHHHHH-HTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET--TEEEEEE
T ss_pred cEEHHHHHHH-CCCccCHHHHHHHHHhCCcccCCEEeccccccCCCCCEEEEC--CEEEEEE
Confidence 3667777765 699999999999999999999999999999999999999996 5666654
No 6
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=97.97 E-value=4.2e-06 Score=57.74 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=42.8
Q ss_pred hHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecc
Q 024598 43 PLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPK 94 (265)
Q Consensus 43 PL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~k 94 (265)
=|--+|-+. ++. +++||++++.+|.|+|||+++++++|-|...|.|+++.
T Consensus 3 RLD~~Ls~~-~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~~~g 52 (58)
T d1vioa2 3 RLDKFIAEN-VGL-TRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFED 52 (58)
T ss_dssp EHHHHHHHH-HTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETT
T ss_pred HHHHHHHHc-CCC-CHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEECC
Confidence 344566654 444 99999999999999999999999999999999999963
No 7
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.92 E-value=6.2e-06 Score=56.96 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=41.2
Q ss_pred HHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEec
Q 024598 45 ILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIP 93 (265)
Q Consensus 45 ~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~ 93 (265)
--||-+. ++. |++||++++.+|.|+|||+++++++|-|-..|+|+++
T Consensus 4 dk~l~~~-~~~-SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~d 50 (59)
T d1kska3 4 DKFIAQQ-LGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD 50 (59)
T ss_dssp HHHHHHH-HTC-CHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred HHHHHHc-CCC-CHHHHHHHHHcCcEEECCEEeecCCcCcCCCCEEEEC
Confidence 3455554 455 9999999999999999999999999999999999996
No 8
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=97.57 E-value=5e-05 Score=55.51 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.7
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeeecCCceEEEEeC
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIR 115 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~~~I~ 115 (265)
.++|.=+|.+ .|+|.+..|||+.+.+|-|+|||.+++|+.|-+-+. .|-++--.|.+|....++
T Consensus 17 ~i~l~~ll~~-~gl~~S~searRlI~~g~V~iN~~ki~d~~~~l~~~----------~~~il~~GKK~~~~i~l~ 80 (81)
T d1h3fa2 17 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLS----------RPRILQRGKDRFVRVRLS 80 (81)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEECS----------SCEEEEETTTEEEEEEEC
T ss_pred cccHHHHHHH-cCCCcCHHHHHHHHHcCCEEECCEEecCccceecCC----------CeEEEEecCccEEEEEeC
Confidence 4788888886 899999999999999999999999999999854322 234455555666655553
No 9
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.37 E-value=0.00029 Score=52.94 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=50.9
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCceEEECCEEecccCCCCCcceeEEecccCcceeeeeecCCceEE
Q 024598 40 ECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRL 111 (265)
Q Consensus 40 ~slPL~i~LRdrLg~A~t~rEar~Il~~g~V~VDGkvr~d~~ypVG~mDVIsI~kt~e~yR~l~d~kgrf~~ 111 (265)
+.+||.=+|. ..|+|.+..|||+++.||-|+|||.+++|+.|.+...|.+ +..|-++--.|.+|.+
T Consensus 30 ~~~~l~~ll~-~~~l~~S~seaRrlI~~ggv~iN~~kv~d~~~~l~~~~~~-----~~~~~ll~~GKK~~~~ 95 (99)
T d1jh3a_ 30 GDVPLVELLV-SAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRL-----EGRFTVIRRGKKKYYL 95 (99)
T ss_dssp SCCCHHHHHH-HHTSCCSHHHHHHHHHSTTEEETTEECCSTTTCCSSTTTS-----SSSEEEEEETTSCEEE
T ss_pred CCCCHHHHHH-HcCCCcCHHHHHHHHHcCCEEECCEEecCcccccCHhHcc-----CCCEEEEEecCCCEEE
Confidence 4678887787 4799999999999999999999999999999988766532 3345555544454444
No 10
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.23 E-value=0.012 Score=41.14 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=36.5
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceE
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNV 225 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~v 225 (265)
|++|+.+-|++|+|.|..|.|..++. .-++.+-|...+++.-...++
T Consensus 11 F~~GDhVkVi~G~~~g~tGlVV~v~~----~~v~~~SD~t~~Ei~V~~~dL 57 (62)
T d2do3a1 11 FKMGDHVKVIAGRFEGDTGLIVRVEE----NFVILFSDLTMHELKVLPRDL 57 (62)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECS----SCEEEEESSSCSEEEECTTSE
T ss_pred cCCCCeEEEeccEEcCccEEEEEEeC----CEEEEEeCCCCCEEEEehHHh
Confidence 88999999999999999999988852 134556777888877555443
No 11
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=85.51 E-value=0.2 Score=33.69 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=25.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNRE 199 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (265)
+.|++|+.+.|+.|.-.|..|+|.++.
T Consensus 3 v~F~~Gd~V~I~~GpF~g~~g~V~~i~ 29 (58)
T d1nz9a_ 3 VAFREGDQVRVVSGPFADFTGTVTEIN 29 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEE
T ss_pred ccccCCCEEEEeccCCCCCEEEEEEEc
Confidence 569999999999999999999999984
No 12
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=84.20 E-value=0.69 Score=35.47 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=39.4
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE-----EcCCCCeEeE--eeceEEEEc
Q 024598 171 EFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHI-----QDALGHEFAT--RLGNVFTIG 229 (265)
Q Consensus 171 ~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i-----~d~~g~~F~T--~~~~vfvIG 229 (265)
..++...|+.+.|+.|++-|..|+|..+... .+.|.| .-.+|...+. ..+||+++.
T Consensus 38 r~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k---~~~V~Vegin~~k~~~k~~~~pIh~SNv~i~~ 100 (119)
T d1vqot1 38 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLD---KAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 100 (119)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEE
T ss_pred cccceeCCCEEEEeecCCCCCcceEEEEECC---CCEEEEeCcEEEecCCceeeccCchHHEEEEe
Confidence 4577888999999999999999999998542 233433 3355555443 346777766
No 13
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=81.30 E-value=0.59 Score=31.22 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=25.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
+.|++|+.+.|+.|.=+|..|+|.++..
T Consensus 3 vdf~~Gd~V~I~~GpF~g~~g~V~~i~~ 30 (58)
T d1nppa2 3 VEFEKGDQVRVIEGPFMNFTGTVEEVHP 30 (58)
T ss_dssp CSCCTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred ccccCCCEEEEcccCCCCCEEEEEEEcC
Confidence 3589999999999999999999999853
No 14
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=73.22 E-value=0.85 Score=33.69 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=35.2
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC---CC-CeEeEeeceEEEEc
Q 024598 175 FDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA---LG-HEFATRLGNVFTIG 229 (265)
Q Consensus 175 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~---~g-~~F~T~~~~vfvIG 229 (265)
.|+|-.|+++.|.+.|+..+|.++..+ +.+.|... +| ..-.....|+...-
T Consensus 4 VevGrV~ii~~G~~~GK~~vIvdiid~----~rvLVdGP~~~tgV~r~~in~k~l~lT~ 58 (96)
T d2joya1 4 IEVGRICVKVKGREAGSKCVIVDIIDD----NFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECSS----SCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred eeccEEEEEeecCCCCCEEEEEEEecC----CeEEEecccccCCcccEEEchHHEEecc
Confidence 578999999999999999999998542 45544332 22 12455566665544
No 15
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=69.42 E-value=1.4 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=24.4
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 024598 173 IKFDVGNVVMVTGGRNRGRVGIIKNRE 199 (265)
Q Consensus 173 i~f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (265)
+++..|+.++|+.|+.-|..|+|..+.
T Consensus 11 ~kikkGD~V~VisGkdKGk~G~Vl~V~ 37 (110)
T d2zjrr1 11 LHFKKGDTVIVLSGKHKGQTGKVLLAL 37 (110)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEE
T ss_pred eeeeCCCEEEEeecCCCCcceEEEEEE
Confidence 567789999999999999999999985
No 16
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=64.37 E-value=1.1 Score=31.94 Aligned_cols=44 Identities=23% Similarity=0.073 Sum_probs=35.9
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCcce
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGFMD 88 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~mD 88 (265)
..+|+=+||++|++-.+ |.=+.+| -|+|||+++..-..|+.-+|
T Consensus 21 ~~~Ll~~LR~~lgltgt----K~gC~~G~CGACTVlvdG~~v~sC~~~~~~~~ 69 (81)
T d1rm6c2 21 NMLLLDYLRETVGLTGT----KQGCDGGECGACTVLVDDRPRLACSTLAHQVA 69 (81)
T ss_dssp TCBHHHHHHHTTCCTTS----CCCSSSSSSCTTEEEETTEEEEGGGSBGGGGT
T ss_pred CCCHHHHHHHhhCCccc----ccCCccccCCccEEeECCceEeehHhhHHHcC
Confidence 56789999999999776 4457777 79999999999888887554
No 17
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Probab=60.84 E-value=1.5 Score=31.20 Aligned_cols=44 Identities=18% Similarity=-0.017 Sum_probs=35.0
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCcce
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGFMD 88 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~mD 88 (265)
..+|+-+|||.|++-.+ |.-+.+| -|+|||+.++.--.|+.-.|
T Consensus 22 ~~~Ll~~LR~~l~ltg~----K~gC~~G~CGACtVlvdG~~v~sCl~~~~~~~ 70 (81)
T d1t3qa2 22 RMHLADALREVVGLTGT----KIGCEQGVCGSCTILIDGAPMRSCLTLAVQAE 70 (81)
T ss_dssp TSBHHHHHHHTTCCTTS----CCSCSSSSSCTTEEEETTEEEEGGGSBGGGGT
T ss_pred CCCHHHHHhhhhCCccc----ccCCCCcccCeeEEEECCCEEeehhheHhhcC
Confidence 67899999999998655 3446777 79999999998888776544
No 18
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=60.22 E-value=1.6 Score=31.08 Aligned_cols=43 Identities=21% Similarity=0.028 Sum_probs=34.9
Q ss_pred ccchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCc
Q 024598 40 ECLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGF 86 (265)
Q Consensus 40 ~slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~ 86 (265)
...+|+=+||++|++-.+ |.=+.+| -|+|||+.++.--.|+.-
T Consensus 19 ~~~~Lld~LR~~lgltg~----K~gC~~G~CGACtVlvdG~~v~SCl~~~~~ 66 (80)
T d1vlba2 19 AEALLSDVLRQQLGLTGV----KVGCEQGQCGACSVILDGKVVRACVTKMKR 66 (80)
T ss_dssp TTSBHHHHHHHTTCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGCBGGG
T ss_pred CCCCHHHHHhHhhCCccc----ccCcCcCCCCeeEEEECCcEEechhhhHHH
Confidence 367899999999999766 4447777 799999999988777663
No 19
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}
Probab=57.56 E-value=2.4 Score=31.24 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.1
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEE
Q 024598 174 KFDVGNVVMVTGGRNRGRVGIIKNRE 199 (265)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~ 199 (265)
++..|+.++|+.|+.-|..|+|..+.
T Consensus 1 KikkGD~V~VisGkdKGK~G~V~~V~ 26 (99)
T d2gycs1 1 KIRRDDEVIVLTGKDKGKRGKVKNVL 26 (99)
T ss_dssp CCCTTSEEECSSSTTTTCEEEEEEEC
T ss_pred CccCCCEEEEeeCCCCCCceEEEEEE
Confidence 35679999999999999999999883
No 20
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=56.59 E-value=1 Score=32.01 Aligned_cols=44 Identities=23% Similarity=0.040 Sum_probs=35.4
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCcce
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGFMD 88 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~mD 88 (265)
..+|+-+||++|++-.+ |.=+.+| -|+|||+.++.-.+|+.-.|
T Consensus 20 ~~~Ll~~LR~~~gl~gt----K~GC~~G~CGaCTVlvdg~~v~SCl~~~~~~~ 68 (79)
T d1ffva2 20 RTLLIHFLREELNLTGA----HIGCETSHCGACTVDIDGRSVKSCTHLAVQCD 68 (79)
T ss_dssp TCBHHHHHHHTSCCTTS----CCCCSSSCSCTTEEEETTEEEEGGGSBGGGGT
T ss_pred CCCHHHHHhhhcCCccc----ccCCccccccccEEecCCcEEEEehhhHHHcC
Confidence 56899999999999654 3345556 79999999999988887654
No 21
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=48.77 E-value=3.1 Score=29.38 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=34.4
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCcc
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGFM 87 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~m 87 (265)
..+|+-+||+.|++-.+ |.=+.+| -|+|||+.++.-..|+..+
T Consensus 20 ~~~Ll~~LR~~~gltgt----K~GC~~G~CGACtV~vdG~~v~SC~~~la~~ 67 (80)
T d1dgja2 20 NDLLVDVLRSQLQLTSV----KVGCGKGQCGACTVILDGKVVRACIIKMSRV 67 (80)
T ss_dssp TCBHHHHHHHTTCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGCBGGGS
T ss_pred CCCHHHHHhhhhCCcee----ccCCCCCCCCeeEEEECCeEEechhhhHHHH
Confidence 56899999999998665 3336666 7999999999998887643
No 22
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=48.10 E-value=2.7 Score=28.32 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=42.2
Q ss_pred cCCCCcccCCeEEEecCCC-ceeeEEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 024598 149 YPDPLIKANDTIKLDLETN-KITEFIKFDVGNVVMVTGGRNRGRVGIIKNREK 200 (265)
Q Consensus 149 ~~d~~ik~~Dtv~i~l~~~-kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 200 (265)
|-++.+..++++.++=+.. -+.....+++|+.+.++.|...--.++|.++.+
T Consensus 6 f~~~~l~~~~~i~L~~~~~hHl~~VLR~k~Gd~v~l~dg~g~~~~~~I~~i~k 58 (72)
T d1nxza1 6 YHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNK 58 (72)
T ss_dssp ECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEEET
T ss_pred EcCcccCCCCEEEcCHHHHHHHHheeCCCCCCEEEEEeCCCCEEEEEEEEEeC
Confidence 3455688999887765533 367888999999999999999999999999864
No 23
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=45.22 E-value=3.6 Score=28.97 Aligned_cols=44 Identities=16% Similarity=-0.065 Sum_probs=35.3
Q ss_pred cchHHHHHHhhhccccCHHHHHHHHhCc-----eEEECCEEecccCCCCCcce
Q 024598 41 CLPLILILRNRLKYALTYREVIAILMQR-----HVLVDAKVRTDKTYPAGFMD 88 (265)
Q Consensus 41 slPL~i~LRdrLg~A~t~rEar~Il~~g-----~V~VDGkvr~d~~ypVG~mD 88 (265)
..+|+-+|||.|++-.+ |.=+.+| -|+|||+.++.--+|+.-.|
T Consensus 20 ~~~Ll~~LR~~~~ltgt----K~GC~~G~CGaCTVlvdg~~v~SCl~~~~~~~ 68 (79)
T d1n62a2 20 RTLLIHFIREQQNLTGA----HIGCDTSHCGACTVDLDGMSVKSCTMFAVQAN 68 (79)
T ss_dssp TCBHHHHHHHTSCCTTS----CCCCSSSCSCTTEEEETTEEEEGGGSBGGGGT
T ss_pred CCcHHHHHhhhcCCccc----ccCCccccccccEEEeCCcEEeeeheEHHhcC
Confidence 56899999999998765 3345566 79999999999888887665
No 24
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=40.96 E-value=26 Score=22.65 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=20.3
Q ss_pred eEEEEEeEEEecCCccEEEEEcCCCCeEe
Q 024598 191 RVGIIKNREKHKGSFETIHIQDALGHEFA 219 (265)
Q Consensus 191 ~vG~I~~i~~~~~s~~~v~i~d~~g~~F~ 219 (265)
.-|+|.+|++.......|+|.+.+|++++
T Consensus 7 ~~G~V~~i~~~~~g~~~I~I~~~~G~~~~ 35 (62)
T d1ci3m2 7 AAGVITAIAKADDGSAEVKIRTEDGTTIV 35 (62)
T ss_dssp SCEEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cCEEEEEeEeccCCCEEEEEECCCCCEEE
Confidence 45788888876644456678888887644
No 25
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=37.23 E-value=21 Score=23.61 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCceEEEccCCeeeecCCCCcccCCeEEEecCCCcee
Q 024598 134 KGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKIT 170 (265)
Q Consensus 134 ~g~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~ 170 (265)
+.--...+..|-.|.+| +-|+.||.|+||-.+++-+
T Consensus 20 ~~~K~a~letG~~i~VP-~FI~~Gd~I~VdT~~g~Y~ 55 (58)
T d1ueba3 20 GGSKPATLETGAVVQVP-LFVEPGEVIKVDTRTGEYV 55 (58)
T ss_dssp CSEEEEEETTSCEEEEE-TTCCTTCEEEEETTTTEEE
T ss_pred CCcceEEEcCCCEEEcC-CcccCCCEEEEECCCCeEe
Confidence 33445667788889877 4799999999999988754
No 26
>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.65 E-value=21 Score=25.18 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=28.0
Q ss_pred ceEEEccCCeeeecCCC---------CcccCCeEEEecCCCcee
Q 024598 136 IPYINTYDGRTIRYPDP---------LIKANDTIKLDLETNKIT 170 (265)
Q Consensus 136 ~~ql~~hDGrni~~~d~---------~ik~~Dtv~i~l~~~kI~ 170 (265)
.+.|-|.|+.+..--+| .+..||.|.||-.+|+|.
T Consensus 29 ~itLKTtd~e~~l~lg~ki~e~L~kekV~~GDVI~ID~~sG~V~ 72 (82)
T d2cqaa1 29 KLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKIS 72 (82)
T ss_dssp EEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEE
T ss_pred EEEEEecCCeEEEeCCHHHHHHHHHcCCCcCCEEEEECCCcEEE
Confidence 46688888888743444 789999999999999875
No 27
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha, C-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.39 E-value=77 Score=21.99 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=31.5
Q ss_pred CcccCCeEEEecCCCceeeEEEee-------CCcEEEEECCCcceeEEEEEeEE
Q 024598 153 LIKANDTIKLDLETNKITEFIKFD-------VGNVVMVTGGRNRGRVGIIKNRE 199 (265)
Q Consensus 153 ~ik~~Dtv~i~l~~~kI~~~i~f~-------~G~~~~v~gG~n~G~vG~I~~i~ 199 (265)
-++.||...+.+...+ .+.+| .|..++.-+|+..| +|.|.+++
T Consensus 57 ~l~~g~~a~v~i~~~~---~i~~e~~~~~~~lGrfilrd~g~Tva-~G~I~~v~ 106 (107)
T d1jnya2 57 FLKQGDVAIVKFKPIK---PLCVEKYNEFPPLGRFAMRDMGKTVG-VGIIVDVK 106 (107)
T ss_dssp CBCTTCEEEEEEEESS---CEECCCTTTSGGGTEEEEEETTEEEE-EEEEEEEE
T ss_pred cccCCceEEEEEEcCC---ceEEeecccCCCcCCEEEEECCceEE-EEEEEEec
Confidence 5899999988886543 34443 36777777877777 89999874
No 28
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=31.33 E-value=31 Score=24.84 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=44.9
Q ss_pred EEEeeCCceEEEccCCee---e-ecCCC-CcccCCeEEEecCCCceeeEEEeeCCcEEEEE-CCCcceeEEEEEeEE
Q 024598 129 VQFGQKGIPYINTYDGRT---I-RYPDP-LIKANDTIKLDLETNKITEFIKFDVGNVVMVT-GGRNRGRVGIIKNRE 199 (265)
Q Consensus 129 k~~~~~g~~ql~~hDGrn---i-~~~d~-~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~-gG~n~G~vG~I~~i~ 199 (265)
+....+=.||+.++--.- | ...+. -+.+||.+.+.+. ...-+.+++|..-.+= ||+.+| .|+|.+|.
T Consensus 20 tp~~~gY~pq~~~~t~d~t~~i~~~~~~~~v~PGd~~~v~~~---l~~P~~le~g~rF~iREggrTVg-~GvVteil 92 (103)
T d1d2ea2 20 KPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLI---LRQPMILEKGQRFTLRDGNRTIG-TGLVTDTP 92 (103)
T ss_dssp SCBCTTCCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEE---EEEEECCCTTCEEEEEETTEEEE-EEEEEECC
T ss_pred eEEeecceeeEEEecccccEEEEecCCccccccCCceEEEEE---ECCceeecCCCEEEEEECCEEEE-EEEEEEcc
Confidence 344556667776654321 2 22233 5899999999985 4577889999855554 447777 79999984
No 29
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}
Probab=30.57 E-value=12 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.4
Q ss_pred eEEEEEeEEEecCCcc
Q 024598 191 RVGIIKNREKHKGSFE 206 (265)
Q Consensus 191 ~vG~I~~i~~~~~s~~ 206 (265)
|||+|.+.++|+.+..
T Consensus 13 rVG~I~s~e~hp~adk 28 (109)
T d1gd7a_ 13 RVGRVLRAEPHEKARK 28 (109)
T ss_dssp EEEEEEEEEECTTCSS
T ss_pred EEEEEEEEEEccCccc
Confidence 7899999999987653
No 30
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}
Probab=30.26 E-value=2.2 Score=31.53 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=23.9
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEe
Q 024598 174 KFDVGNVVMVTGGRNRGRVGIIKNREKH 201 (265)
Q Consensus 174 ~f~~G~~~~v~gG~n~G~vG~I~~i~~~ 201 (265)
++..|+.+.|+.|+.-|..|+|.++...
T Consensus 5 kIkkGD~V~VisGkdKGk~G~Vl~V~~~ 32 (101)
T d2j01y1 5 HVKKGDTVLVASGKYKGRVGKVKEVLPK 32 (101)
T ss_dssp CSCCSSCEECCSSTTSSCCBSCCCCCCT
T ss_pred EEECCCEEEEeeCCCCCCeEEEEEEECC
Confidence 4567999999999999999999998643
No 31
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}
Probab=24.74 E-value=35 Score=22.15 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=14.4
Q ss_pred eeEEEEEeEEEecCCccEEEEEcCCCCe
Q 024598 190 GRVGIIKNREKHKGSFETIHIQDALGHE 217 (265)
Q Consensus 190 G~vG~I~~i~~~~~s~~~v~i~d~~g~~ 217 (265)
|..|+|.+|. -+. ..+++.+|+.
T Consensus 28 ~~~G~V~~I~----l~~-T~l~~~dg~~ 50 (67)
T d2vv5a1 28 GVAGTVLSVQ----IFS-TTMRTADGKI 50 (67)
T ss_dssp SCEEEEEEEC----SSE-EEEECTTSCE
T ss_pred CEEEEEEEEe----ceE-EEEEccCCCE
Confidence 4688888883 333 3466777764
No 32
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.00 E-value=1.1e+02 Score=21.38 Aligned_cols=72 Identities=6% Similarity=-0.012 Sum_probs=38.7
Q ss_pred eEEEccCCeeeecCCCCcccCCeEEEecCCCceeeEEEeeCCcEEEEECCCcceeEEEEEeEEEec-CCccEEEEEcCCC
Q 024598 137 PYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALG 215 (265)
Q Consensus 137 ~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~-~s~~~v~i~d~~g 215 (265)
..+.+.||...... ++++||.|.---++++.... ..+..+.... .....+.+...+|
T Consensus 6 T~V~~~dG~~k~I~--dl~~GD~V~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~~g 63 (145)
T d1at0a_ 6 STALLESGVRKPLG--ELSIGDRVLSMTANGQAVYS--------------------EVILFMDRNLEQMQNFVQLHTDGG 63 (145)
T ss_dssp CEEEBTTSCEEEGG--GCCTTCEEEEECTTSCEEEE--------------------EEEEEEEEEEEEEEEEEEEEETTS
T ss_pred CEEECCCCCEeEhh--hcccCCEEEEecCCCcEeee--------------------eeEEEEEEccccceEEEEEEeCCC
Confidence 45678888776554 47888877554444432211 1111111122 2235566666777
Q ss_pred CeEeEeeceEEEEcc
Q 024598 216 HEFATRLGNVFTIGK 230 (265)
Q Consensus 216 ~~F~T~~~~vfvIG~ 230 (265)
.++....+.-|.+.+
T Consensus 64 ~~l~~T~~H~~~v~~ 78 (145)
T d1at0a_ 64 AVLTVTPAHLVSVWQ 78 (145)
T ss_dssp CEEEECTTCEEEEEE
T ss_pred CEEEEecCceEEEEc
Confidence 777666666666643
No 33
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=23.43 E-value=42 Score=22.49 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=19.4
Q ss_pred eEEECCEEec---ccCCCCCcceeEEe
Q 024598 69 HVLVDAKVRT---DKTYPAGFMDVVSI 92 (265)
Q Consensus 69 ~V~VDGkvr~---d~~ypVG~mDVIsI 92 (265)
.|.|||+.++ +...++.=.|.|.|
T Consensus 54 ~i~vng~~i~~~~~~~~~l~~gdeV~i 80 (87)
T d1v8ca1 54 SVFLEGRDVRYLQGLSTPLSPGATLDL 80 (87)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEEcCeeeecccCCcccCCCCCEEEE
Confidence 3999999886 46778888888876
No 34
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=21.52 E-value=49 Score=23.57 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.8
Q ss_pred eEEEEEeEEEecCCcc
Q 024598 191 RVGIIKNREKHKGSFE 206 (265)
Q Consensus 191 ~vG~I~~i~~~~~s~~ 206 (265)
++|+|.+.++||.+..
T Consensus 14 rVG~I~~~~~hp~adk 29 (107)
T d1mkha_ 14 RVGKIIEVKDHPNADK 29 (107)
T ss_dssp EEEEEEEEEECTTCSS
T ss_pred EEEEEEEEEecCCCCc
Confidence 6899999999997763
No 35
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=20.88 E-value=76 Score=25.04 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=59.0
Q ss_pred EeChhhhcceeEEEEEEEEeeCCceEEEccCCeeeecC---CC----Ccc-cCCeEEEecCCCceeeEEEeeCCcEEEEE
Q 024598 113 SIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DP----LIK-ANDTIKLDLETNKITEFIKFDVGNVVMVT 184 (265)
Q Consensus 113 ~I~~eea~~KLcKV~~k~~~~~g~~ql~~hDGrni~~~---d~----~ik-~~Dtv~i~l~~~kI~~~i~f~~G~~~~v~ 184 (265)
||+++...+|- -|-||.+-.++...+..--|-|-|.+ |+ -|. .||-++==+++++.. .++..+|.+.+.-
T Consensus 13 Wieen~~~lkP-PV~Nk~l~~~~d~iVMvVGGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~-di~I~EGe~fLLP 90 (174)
T d1yfua1 13 WIDEHAHLLKP-PVGNRQVWQDSDFIVTVVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRE-RADLKEGDIFLLP 90 (174)
T ss_dssp HHHHTGGGSST-TTCEEESSSSCSEEEEEECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEE-EEEECTTCEEEEC
T ss_pred HHHhhHHhhCC-CCCceEEeeCCCEEEEEecCCcccCccccCcchhheeeeccceEEEEEeCCceE-EEEcCCCcEEEeC
Confidence 55444443221 25677776767666667777777632 12 122 233222222567754 5889999999998
Q ss_pred CC------Cc-ceeEEEEEeEEEecCCccE
Q 024598 185 GG------RN-RGRVGIIKNREKHKGSFET 207 (265)
Q Consensus 185 gG------~n-~G~vG~I~~i~~~~~s~~~ 207 (265)
+. +- +|.+|.+.|+.+.++..|-
T Consensus 91 ~~vpHSPqR~~~~tiGLViEr~R~~g~~D~ 120 (174)
T d1yfua1 91 PHVRHSPQRPEAGSACLVIERQRPAGMLDG 120 (174)
T ss_dssp TTCCEEEEBCCTTCEEEEEEECCCTTCCEE
T ss_pred CCCCCCcccCCCCceeEEEEEecCCCCccc
Confidence 87 54 6999999999888776653
No 36
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.21 E-value=58 Score=21.50 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=18.8
Q ss_pred eEEECCEEecccCCCCCcceeEEe
Q 024598 69 HVLVDAKVRTDKTYPAGFMDVVSI 92 (265)
Q Consensus 69 ~V~VDGkvr~d~~ypVG~mDVIsI 92 (265)
.|.|||+.+. ..+++-=.|.|+|
T Consensus 61 ~iavN~~~~~-~d~~L~~gDevai 83 (88)
T d1vjka_ 61 NIAVNGRYVS-WDEELKDGDVVGV 83 (88)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEE
T ss_pred EEEEcceEcC-CCcCcCCCCEEEE
Confidence 4899999985 4688888888876
Done!