BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024600
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
VE++ ++P A ++ N + E E + LA+P ++++TV +S TG+ + + R S +L
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377
Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 192
D +I + +RI DFT E LQV +Y G Y+PHFD+ E F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437
Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 252
R+ATVL Y+S E GG TVF N L G ++ P DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478
Query: 253 KPDASLDPSSLHG 265
+ D D + H
Sbjct: 479 RRDGEGDLRTRHA 491
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 23/187 (12%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P + ++TV D +TGK ++ R S +L+ D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL 258
L Y+SDV GG TVFP + G S+ PK G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHG 265
D S+ H
Sbjct: 495 DYSTRHA 501
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR + + +S EE E + LA P + ++TV D +TGK + R S +L+ +
Sbjct: 316 KPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPV 375
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 376 VSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATW 435
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL 258
L Y+SDV GG TVFP + G S+ PK G A+ ++++ P
Sbjct: 436 LFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFPSGEG 476
Query: 259 DPSSLHG 265
D S+ H
Sbjct: 477 DYSTRHA 483
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL 258
L Y+SDV GG TVFP + G S+ PK G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHG 265
D S+ H
Sbjct: 495 DYSTRHA 501
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ + +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL 258
L Y+SDV GG TVFP + G S+ PK G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHG 265
D S+ H
Sbjct: 495 DYSTRHA 501
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ + +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL 258
L Y+SDV GG TVFP + G S+ PK G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHG 265
D S+ H
Sbjct: 495 DYSTRHA 501
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Query: 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKII 143
P Y++ +S EE E + LA P + ++TV D TG + R S ++L D ++
Sbjct: 337 PHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 396
Query: 144 RDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMY 201
+ +R+ T ++ E LQV +Y G +YEPHFD+ F++ K+ G R+AT L Y
Sbjct: 397 AKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNY 456
Query: 202 LSDVEEGGETVFPNAQGNI-----SAVPWWN 227
+SDVE GG TVFP+ I +AV W+N
Sbjct: 457 MSDVEAGGATVFPDFGAAIWPKKGTAVFWYN 487
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ + +
Sbjct: 334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASL 258
L Y+SDV GG TVFP + G S+ PK G A+ ++++
Sbjct: 454 LFYMSDVLAGGATVFP-------------------EVGASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHG 265
D S+ H
Sbjct: 495 DYSTRHA 501
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKII 143
P Y++ +S EE E + +A P + ++TV D TG + R S ++L D ++
Sbjct: 336 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 395
Query: 144 RDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYF----MDEFNTKNGGQRMATVL 199
+ +R+ T ++ E LQV +Y G +YEPHFD+ D F G R+AT L
Sbjct: 396 ARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFL 455
Query: 200 MYLSDVEEGGETVFPNAQGNI-----SAVPWWNEL 229
Y+SDVE GG TVFP+ I +AV W+N L
Sbjct: 456 NYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLL 490
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKII 143
P Y++ +S EE E + +A P + ++TV D TG + R S ++L D ++
Sbjct: 338 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 397
Query: 144 RDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVL 199
+ +R+ T ++ E LQV +Y G +YEPHFD+ D F G R+AT L
Sbjct: 398 ARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFL 457
Query: 200 MYLSDVEEGGETVFPNAQGNI-----SAVPWWNEL 229
Y+SDVE GG TVFP+ I +AV W+N L
Sbjct: 458 NYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLL 492
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 23/193 (11%)
Query: 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
VE+ + P A ++ + +S +E + LA P + ++TV DS TGK + R S +L
Sbjct: 321 VEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLK 380
Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 192
++ + KRI T +E E LQ+ +Y G Y+PHFD+ E F + G
Sbjct: 381 EWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTG 440
Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 252
R+ATVL Y+S GG TVF A+ +I P DAL ++++
Sbjct: 441 NRIATVLFYMSQPSHGGGTVFTEAKS-------------------TILPTKNDALFWYNL 481
Query: 253 KPDASLDPSSLHG 265
+P + H
Sbjct: 482 YKQGDGNPDTRHA 494
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EVI EP +YH+F+S E + + LA P +++S V + K R S +L
Sbjct: 340 EVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGE--KQLPVEYRISKSAWLKD 397
Query: 138 GRDKIIRDIEKRIADFTFFPLE--NGEGLQVLHYEAGQKYEPHFDYFM---DEFNTKNGG 192
D ++ ++ RIA T ++ E LQV++Y G YEPHFD+ N G
Sbjct: 398 TVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMNSG 457
Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNIS-------AVPWWN 227
R+AT ++YLS VE GG T F GN S A+ WWN
Sbjct: 458 NRVATFMIYLSSVEAGGATAF--IYGNFSVPVVKNAALFWWN 497
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 16/162 (9%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EVI P +YH+F+S EE + + LA P +++S V + K R S +L
Sbjct: 340 EVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKD 397
Query: 138 GRDKIIRDIEKRIADFTFFPLE--NGEGLQVLHYEAGQKYEPHFDYFM---DEFNTKNGG 192
D ++ +++RIA T ++ E LQV++Y G YEPHFD+ G
Sbjct: 398 TVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSG 457
Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNIS-------AVPWWN 227
R AT+++YLS VE GG T F GN S A+ WWN
Sbjct: 458 NRAATLMIYLSSVEAGGATAF--IYGNFSVPVVKNAALFWWN 497
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EV+ P +YH+F+S EE + + LA P +++S V + K R S +L
Sbjct: 338 EVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKD 395
Query: 138 GRDKIIRDIEKRIADFTFFPLE--NGEGLQVLHYEAGQKYEPHFDYFM---DEFNTKNGG 192
D ++ ++ RIA T ++ E LQV++Y G YEPHFD+ G
Sbjct: 396 TVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 455
Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNIS-------AVPWWN 227
R+AT ++YLS VE GG T F GN S A+ WWN
Sbjct: 456 NRVATFMIYLSSVEAGGATAF--IYGNFSVPVVKNAALFWWN 495
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EVI EP +YH+F+S E + + LA P +++S V + K R S +L
Sbjct: 340 EVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKD 397
Query: 138 GRDKIIRDIEKRIADFTFFPLE--NGEGLQVLHYEAGQKYEPHFDYFM---DEFNTKNGG 192
D + + RIA T + E LQV++Y G YEPHFD+ G
Sbjct: 398 TVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 457
Query: 193 QRMATVLMYLSDVEEGGETVFPNAQGNI-----SAVPWWN 227
R+AT ++YLS VE GG T F A ++ +A+ WWN
Sbjct: 458 NRVATFMIYLSSVEAGGATAFIYANLSVPVVRNAALFWWN 497
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 85 RAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIR 144
+ FV +N ++ +C+ ++ A + DS D +R S ++++ + +++
Sbjct: 59 KPFVLNNLINPTKCQEIMQFAN-----GKLFDSQVLSGTDKNIRNSQQMWISKN-NPMVK 112
Query: 145 DIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMD------EFNTKNGGQRMATV 198
I + I P +N E LQV+ Y Q Y H D D EF + GGQR+ TV
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEF-IERGGQRILTV 171
Query: 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAS- 257
L+YL++ G T FPN KPK GDAL+F+ + +++
Sbjct: 172 LIYLNNEFSDGHTYFPNLNQ-------------------KFKPKTGDALVFYPLANNSNK 212
Query: 258 LDPSSLHG 265
P SLH
Sbjct: 213 CHPYSLHA 220
>sp|Q9NXG6|P4HTM_HUMAN Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1
SV=2
Length = 502
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 73/176 (41%), Gaps = 42/176 (23%)
Query: 127 VRTSSGTFLARGR--DKIIRDIEKRIADFTFFP---LENGEGLQVLHYEAGQKYEPHFD- 180
VR S T+L +G I+R I +R+ T +E E LQV+ Y G Y H D
Sbjct: 272 VRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDS 331
Query: 181 -------------YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWN 227
+E R TVL YL++V GGETVFP A ++
Sbjct: 332 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRT-----YD 386
Query: 228 ELS-------------ECGKTGLSIKPKMGDALLFWSMKPDAS-----LDPSSLHG 265
E+S C K L +KP+ G A+ +++ PD +D SLHG
Sbjct: 387 EMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHG 442
>sp|Q8BG58|P4HTM_MOUSE Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2
SV=1
Length = 503
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 42/176 (23%)
Query: 127 VRTSSGTFLARGR--DKIIRDIEKRIADFTFFP---LENGEGLQVLHYEAGQKYEPHFD- 180
VR S T+L +G ++R I +R+ T +E E LQV+ Y G Y H D
Sbjct: 273 VRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDS 332
Query: 181 -------------YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWN 227
+E R TVL YL++V GGETVFP A ++
Sbjct: 333 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRT-----YD 387
Query: 228 ELS-------------ECGKTGLSIKPKMGDALLFWSMKPDAS-----LDPSSLHG 265
E+S C K L +KP+ G A+ +++ PD +D SLHG
Sbjct: 388 EMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHG 443
>sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana
GN=At2g34300 PE=1 SV=2
Length = 770
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1 MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAF-GILSMPSSSGDSRKANDLSSIV 59
MA +YSR +KSSS L +T++++ + ++ F S P+ S + +
Sbjct: 1 MAMGKYSRVDGKKSSSYGLTITIVLLLSLCLVGTWMFMSSWSAPADSAGYSSTDTAKDVS 60
Query: 60 RKSMERSEGD 69
+ + + EGD
Sbjct: 61 KNDLRKEEGD 70
>sp|B2A2Y9|RECF_NATTJ DNA replication and repair protein RecF OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=recF PE=3 SV=1
Length = 386
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 68 GDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRV 127
G RA++ E+I WE F L KE+ +Y + + T + GK+K+ +V
Sbjct: 49 GKSHRAQKEKELIRWETSGFYLKGELEKEQAQYTLEIITNYQ---------NGKNKNLKV 99
Query: 128 RTSSGT 133
S T
Sbjct: 100 NNLSQT 105
>sp|A7H409|SECA_CAMJD Protein translocase subunit SecA OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=secA
PE=3 SV=1
Length = 862
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 85 RAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIR 144
R+ V+HN L+KE+ + + A H +++ ++ D GK + T+ RG D I
Sbjct: 455 RSEVFHNMLAKEKIPHHVLNAKNHEQEALII-QDAGKKGAVTIATNMA---GRGVDIKID 510
Query: 145 DIEKRIADFTFFPLENGEGLQV---LHYEAGQKYEPHFDYFM----DEFNTKNGGQRMAT 197
D + + E E ++ L AG++ +P F D GG R+ +
Sbjct: 511 DEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGDRIKS 570
Query: 198 VLMYLSDVEEG 208
++ L +EEG
Sbjct: 571 IMDRLG-IEEG 580
>sp|O19023|CEL3B_MACMU Chymotrypsin-like elastase family member 3B (Fragment) OS=Macaca
mulatta GN=CELA3B PE=2 SV=1
Length = 257
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 205 VEEGGETVFPNAQGNISAVPWWNELS-ECGK----TGLSIKPKMGDALLFWSMKPDASLD 259
V+EG E V P G++ P WN L CG LS ++GDA+ S+ P +
Sbjct: 79 VKEGPEQVIPINSGDLFVHPLWNRLCVACGNDIALIKLSRSAQLGDAVQLASLPPAGDIL 138
Query: 260 PS 261
P+
Sbjct: 139 PN 140
>sp|Q973C8|SYT_SULTO Threonine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=thrS PE=3 SV=1
Length = 540
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 144 RDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLS 203
R I +R+ F+F P E GL + HY+ GQ FM+E N G Q + T +Y S
Sbjct: 136 RIIGERLDLFSF-PDETAPGLALFHYK-GQIIRKELMKFMEEINESMGYQEVFTAEIYRS 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,482,240
Number of Sequences: 539616
Number of extensions: 4243048
Number of successful extensions: 9678
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9632
Number of HSP's gapped (non-prelim): 33
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)