Query 024600
Match_columns 265
No_of_seqs 224 out of 1203
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.1E-52 2.5E-57 384.8 22.1 194 71-265 41-234 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 5.7E-46 1.2E-50 336.9 15.9 241 8-265 10-266 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 1.7E-30 3.6E-35 220.4 16.2 151 84-253 1-155 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.9 3.8E-21 8.3E-26 169.5 13.7 142 86-252 2-156 (226)
5 PHA02813 hypothetical protein; 99.5 2.5E-13 5.4E-18 125.1 11.3 135 97-256 24-165 (354)
6 PHA02869 C4L/C10L-like gene fa 99.4 4.8E-13 1E-17 124.8 9.9 121 109-256 45-174 (418)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.2 2E-11 4.4E-16 93.7 4.5 73 164-251 1-76 (100)
8 COG3128 PiuC Uncharacterized i 98.9 1.7E-08 3.7E-13 85.8 10.5 143 85-252 3-159 (229)
9 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.6 4.7E-08 1E-12 70.9 4.6 53 161-217 10-66 (70)
10 KOG3710 EGL-Nine (EGLN) protei 97.9 0.0002 4.3E-09 63.1 11.5 148 84-256 53-220 (280)
11 PF03336 Pox_C4_C10: Poxvirus 97.6 0.00026 5.7E-09 65.7 8.0 89 123-215 36-128 (339)
12 TIGR02408 ectoine_ThpD ectoine 97.5 0.0012 2.5E-08 60.1 11.9 134 79-216 24-168 (277)
13 PHA02866 Hypothetical protein; 97.1 0.0011 2.4E-08 60.5 5.9 96 109-215 32-130 (333)
14 PF05721 PhyH: Phytanoyl-CoA d 97.0 0.0026 5.5E-08 53.4 7.3 160 86-255 6-198 (211)
15 COG3751 EGL-9 Predicted prolin 96.9 0.01 2.3E-07 53.3 10.2 75 163-253 137-215 (252)
16 PF03171 2OG-FeII_Oxy: 2OG-Fe( 96.5 0.001 2.2E-08 50.5 0.8 72 162-264 2-79 (98)
17 PF13759 2OG-FeII_Oxy_5: Putat 96.1 0.012 2.5E-07 45.3 4.8 80 166-256 4-85 (101)
18 TIGR01762 chlorin-enz chlorina 95.9 0.27 5.8E-06 45.1 13.9 122 85-213 15-152 (288)
19 TIGR02466 conserved hypothetic 95.6 0.12 2.6E-06 45.1 9.7 84 162-256 96-181 (201)
20 PF13532 2OG-FeII_Oxy_2: 2OG-F 94.5 0.56 1.2E-05 39.6 10.8 138 86-250 2-161 (194)
21 PF09859 Oxygenase-NA: Oxygena 93.8 0.11 2.3E-06 43.9 4.7 74 163-255 63-140 (173)
22 KOG3200 Uncharacterized conser 92.9 0.55 1.2E-05 40.2 7.6 95 79-182 7-108 (224)
23 PRK15401 alpha-ketoglutarate-d 89.4 7 0.00015 34.5 11.4 85 142-250 96-180 (213)
24 KOG3844 Predicted component of 87.5 6.3 0.00014 37.9 10.3 63 145-216 100-167 (476)
25 KOG3959 2-Oxoglutarate- and ir 78.4 3.2 7E-05 37.2 4.3 95 83-183 71-175 (306)
26 PHA02923 hypothetical protein; 76.4 8.5 0.00019 35.6 6.5 67 140-218 43-111 (315)
27 COG3145 AlkB Alkylated DNA rep 72.8 55 0.0012 28.4 10.4 84 143-250 87-170 (194)
28 TIGR00568 alkb DNA alkylation 72.4 33 0.00072 29.0 8.8 86 141-250 74-159 (169)
29 PLN03001 oxidoreductase, 2OG-F 65.8 28 0.0006 31.4 7.4 42 141-182 87-142 (262)
30 COG3826 Uncharacterized protei 65.3 14 0.0003 32.0 5.0 69 163-250 125-196 (236)
31 PLN02984 oxidoreductase, 2OG-F 64.1 35 0.00075 32.1 8.0 23 84-106 60-82 (341)
32 PF13677 MotB_plug: Membrane M 62.7 21 0.00046 24.7 4.7 24 1-24 1-24 (58)
33 PF06822 DUF1235: Protein of u 59.7 39 0.00085 30.8 7.1 83 140-252 32-115 (266)
34 PF12851 Tet_JBP: Oxygenase do 58.6 20 0.00043 30.3 4.9 62 174-257 86-149 (171)
35 COG3491 PcbC Isopenicillin N s 57.4 53 0.0011 30.7 7.7 59 160-250 172-236 (322)
36 PLN02485 oxidoreductase 55.0 40 0.00087 31.3 6.7 23 84-106 46-68 (329)
37 PLN02904 oxidoreductase 54.8 55 0.0012 30.9 7.7 25 83-107 80-104 (357)
38 PLN02639 oxidoreductase, 2OG-F 53.3 68 0.0015 29.9 8.0 25 83-107 62-86 (337)
39 PLN02365 2-oxoglutarate-depend 51.4 53 0.0011 30.1 6.8 39 144-182 126-175 (300)
40 PLN02254 gibberellin 3-beta-di 49.9 78 0.0017 29.9 7.8 23 84-106 79-101 (358)
41 PF14033 DUF4246: Protein of u 49.8 30 0.00065 34.4 5.2 73 176-255 364-453 (501)
42 COG5285 Protein involved in bi 49.7 39 0.00085 31.3 5.5 72 174-250 132-206 (299)
43 PLN02750 oxidoreductase, 2OG-F 47.0 94 0.002 29.1 7.9 24 83-106 54-77 (345)
44 PLN02947 oxidoreductase 46.1 88 0.0019 29.8 7.6 24 84-107 95-118 (374)
45 PLN02299 1-aminocyclopropane-1 46.0 48 0.001 30.8 5.6 24 84-107 35-58 (321)
46 PLN02912 oxidoreductase, 2OG-F 45.9 94 0.002 29.2 7.7 25 83-107 69-93 (348)
47 PF03579 SHP: Small hydrophobi 44.7 34 0.00073 23.9 3.3 29 12-40 13-41 (64)
48 PLN02276 gibberellin 20-oxidas 44.1 1.1E+02 0.0023 28.9 7.8 25 83-107 71-95 (361)
49 PTZ00273 oxidase reductase; Pr 43.7 1.1E+02 0.0025 28.1 7.8 23 84-106 37-59 (320)
50 PLN00417 oxidoreductase, 2OG-F 42.6 98 0.0021 29.1 7.2 25 83-107 74-98 (348)
51 PLN02515 naringenin,2-oxogluta 41.7 1.3E+02 0.0028 28.5 7.9 25 83-107 67-91 (358)
52 PLN02758 oxidoreductase, 2OG-F 41.7 1.2E+02 0.0026 28.7 7.7 24 84-107 84-107 (361)
53 PHA02985 hypothetical protein; 40.8 97 0.0021 28.2 6.5 82 140-252 39-120 (271)
54 PLN02997 flavonol synthase 40.7 69 0.0015 29.8 5.8 24 83-106 57-80 (325)
55 PLN03002 oxidoreductase, 2OG-F 39.9 1.2E+02 0.0026 28.2 7.4 23 84-106 40-62 (332)
56 COG2850 Uncharacterized conser 39.0 59 0.0013 31.1 5.1 47 150-198 107-154 (383)
57 PLN02216 protein SRG1 36.4 1.1E+02 0.0024 28.8 6.6 24 84-107 82-105 (357)
58 KOG0143 Iron/ascorbate family 31.2 1.9E+02 0.0041 26.9 7.1 21 87-107 51-71 (322)
59 PRK09553 tauD taurine dioxygen 30.9 33 0.00071 31.0 2.0 35 176-216 95-129 (277)
60 PF11807 DUF3328: Domain of un 30.8 74 0.0016 26.5 4.1 7 176-182 160-166 (217)
61 PF04835 Pox_A9: A9 protein co 28.7 1.1E+02 0.0023 21.1 3.6 21 26-46 30-50 (54)
62 PLN02393 leucoanthocyanidin di 28.4 2.4E+02 0.0051 26.6 7.4 25 83-107 82-106 (362)
63 PF14851 FAM176: FAM176 family 28.0 46 0.00099 27.9 2.2 23 21-43 22-44 (153)
64 PF14927 Neurensin: Neurensin 25.8 1.2E+02 0.0026 25.0 4.2 10 7-16 32-41 (140)
65 PLN02403 aminocyclopropanecarb 25.7 1.5E+02 0.0033 27.2 5.5 24 83-106 30-53 (303)
66 PF15330 SIT: SHP2-interacting 25.1 56 0.0012 25.6 2.1 20 23-42 3-22 (107)
67 PLN02704 flavonol synthase 24.8 1.2E+02 0.0027 28.2 4.7 25 83-107 67-91 (335)
68 KOG4176 Uncharacterized conser 24.5 2.8E+02 0.0062 26.0 7.0 56 141-205 190-245 (323)
69 PLN02156 gibberellin 2-beta-di 23.2 5E+02 0.011 24.2 8.5 24 84-107 49-72 (335)
70 PF15183 MRAP: Melanocortin-2 23.2 1.1E+02 0.0024 23.0 3.2 20 18-37 43-62 (90)
71 PLN03178 leucoanthocyanidin di 21.9 3.1E+02 0.0067 25.8 6.9 24 83-106 78-101 (360)
72 TIGR02409 carnitine_bodg gamma 21.2 99 0.0021 29.1 3.3 37 174-216 186-222 (366)
73 cd08788 CARD_NOD2_2_CARD15 Cas 21.1 44 0.00095 24.9 0.7 15 89-103 25-39 (81)
74 PF13544 N_methyl_2: Type IV p 20.7 1.1E+02 0.0025 18.2 2.4 22 5-26 4-25 (31)
75 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 20.6 1.2E+02 0.0025 26.1 3.4 66 140-216 70-146 (195)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.1e-52 Score=384.76 Aligned_cols=194 Identities=53% Similarity=0.904 Sum_probs=177.9
Q ss_pred CCCceeEEEEecCCCEEEEcCCCCHHHHHHHHHHHcCCCCcceeEeCCCCCccccceeeccceeecCCccHHHHHHHHHH
Q 024600 71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI 150 (265)
Q Consensus 71 ~~~~~~ve~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri 150 (265)
.-.+.++|+||++|+||+|+||||++||++||+++++.+++++++++.+|+...+++|+|+++|+...+++++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 44789999999999999999999999999999999999999999887777777889999999999887789999999999
Q ss_pred hhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCcccccc
Q 024600 151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS 230 (265)
Q Consensus 151 ~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~ 230 (265)
++++++|.++.|++||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||.+.. ....+.++.++
T Consensus 121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s 199 (310)
T PLN00052 121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS 199 (310)
T ss_pred HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence 99999999999999999999999999999999765444568899999999999999999999998753 22345567889
Q ss_pred ccCCCCeeEecCCceEEEEecCCCCCCCCCCCCCC
Q 024600 231 ECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG 265 (265)
Q Consensus 231 ~c~~~~l~V~Pk~G~AlvF~n~~~dg~~D~~slH~ 265 (265)
+|.+.+++|+|++|+||||+|+++||++|++|+|+
T Consensus 200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHa 234 (310)
T PLN00052 200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHG 234 (310)
T ss_pred hhhcCCeEeccCcceEEEEeccCCCCCCCcccccC
Confidence 99999999999999999999999999999999997
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-46 Score=336.92 Aligned_cols=241 Identities=47% Similarity=0.729 Sum_probs=195.3
Q ss_pred CCCCCCCc--hHHHHHHHHHHHHHHHHHHHHhccccCCC---CCCCCCCCCCcchhhhcccccc------CCCCCCCcee
Q 024600 8 RFPTRKSS--SSTLILTLLIMFTFAILILLAFGILSMPS---SSGDSRKANDLSSIVRKSMERS------EGDEGRAEQW 76 (265)
Q Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 76 (265)
+...+++. ..+.++.++.....+...+..+..+..+. ......-.++++.......... .++...++.|
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~ap~k 89 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGPFLRLAPVK 89 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCcceeecchh
Confidence 44455533 34667777777777777777777777766 2222223344432222111110 1456779999
Q ss_pred EEEEecCCCEEEEcCCCCHHHHHHHHHHHcCCCCcceeE-eCCCCCccccceeeccceeecCCccHHHHHHHHHHhhccC
Q 024600 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV-DSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF 155 (265)
Q Consensus 77 ve~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~-~~~~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~~~ 155 (265)
+|+|||+|++++||||||++||++|+.++++.+.++++. +.++|....+.+|+|+++|+..+.+++++.|++||+++++
T Consensus 90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~ 169 (289)
T KOG1591|consen 90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTG 169 (289)
T ss_pred hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999994 5555776777789999999998779999999999999999
Q ss_pred CCCCCCcccEEEEcCCCCCcccCccCCcc---c-cccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCccccccc
Q 024600 156 FPLENGEGLQVLHYEAGQKYEPHFDYFMD---E-FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSE 231 (265)
Q Consensus 156 ~p~~~~E~lqv~rY~~G~~y~~H~D~~~~---~-~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~~ 231 (265)
+|.+++|.+||++|+.||+|.+|+|++.+ . ++..++++|++|+++||+|+++||+|+||.++.
T Consensus 170 l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~------------- 236 (289)
T KOG1591|consen 170 LPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGM------------- 236 (289)
T ss_pred CCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCC-------------
Confidence 99999999999999999999999999952 2 345678999999999999999999999998742
Q ss_pred cCCCCeeEecCCceEEEEecCCCCCCCCCCCCCC
Q 024600 232 CGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHG 265 (265)
Q Consensus 232 c~~~~l~V~Pk~G~AlvF~n~~~dg~~D~~slH~ 265 (265)
.++|+|++|+|++|+|+++||+.|++|+||
T Consensus 237 ----~~~V~PkkGdal~wfnl~~~~~~d~~S~H~ 266 (289)
T KOG1591|consen 237 ----KPAVKPKKGDALFWFNLHPDGEGDPRSLHG 266 (289)
T ss_pred ----cccccCCCCCeeEEEEccCCCCCCcccccc
Confidence 259999999999999999999999999997
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.97 E-value=1.7e-30 Score=220.45 Aligned_cols=151 Identities=42% Similarity=0.668 Sum_probs=130.6
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHcCCCCcceeEeCCCCCccccceeeccceeecCCc-cHHHHHHHHHHhhccCCC---CC
Q 024600 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGR-DKIIRDIEKRIADFTFFP---LE 159 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~~~~-d~~v~~i~~Ri~~~~~~p---~~ 159 (265)
|.|++++||||++||++||+++++...++.+.++..+....+++|+|..+|+...+ +++++.|.+|++++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999987778776654433356789999999998754 789999999999999998 67
Q ss_pred CCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCccccccccCCCCeeE
Q 024600 160 NGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSI 239 (265)
Q Consensus 160 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V 239 (265)
..|.+|+.+|.+|++|.+|+|+.... ..++|.+|+++||||+++||+|.|+..+. .....|
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~----~~~~r~~T~~~yLn~~~~GG~~~f~~~~~---------------~~~~~v 141 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDD----ENGDRIATFLLYLNDVEEGGELVFPGLGL---------------MVCATV 141 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCC----CCCCeEEEEEEEeccCCcCceEEecCCCC---------------ccceEE
Confidence 89999999999999999999998642 12689999999999999999999998631 135699
Q ss_pred ecCCceEEEEecCC
Q 024600 240 KPKMGDALLFWSMK 253 (265)
Q Consensus 240 ~Pk~G~AlvF~n~~ 253 (265)
+|++|++|+|+|..
T Consensus 142 ~P~~G~~v~f~~~~ 155 (178)
T smart00702 142 KPKKGDLLFFPSGR 155 (178)
T ss_pred eCCCCcEEEEeCCC
Confidence 99999999999874
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.86 E-value=3.8e-21 Score=169.46 Aligned_cols=142 Identities=22% Similarity=0.271 Sum_probs=102.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHcCC-CCcceeEeCCCCCccccceeeccceeecCCccHHHHHHHHHHhhcc---------C
Q 024600 86 AFVYHNFLSKEECEYLINLATPH-MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT---------F 155 (265)
Q Consensus 86 i~vi~nfLs~~EC~~Li~~a~~~-l~~s~v~~~~~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~~---------~ 155 (265)
|++|+|+||++||+++++..+.. +....+ |.....+++|++..+-. .+++.+.|.++|.+.+ .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~----taG~~~~~vKnN~ql~~---d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRV----TAGAQAAQVKNNQQLPE---DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCc----CcCccchhcccccccCC---CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 68999999999999999998753 333222 22224567888766542 2456666666665543 3
Q ss_pred CCCCCCcccEEEEcCCCCCcccCccCCccccc-cCCCCceEEEEEEecccCC--CCcceeccCCCCCCCCCCcccccccc
Q 024600 156 FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFN-TKNGGQRMATVLMYLSDVE--EGGETVFPNAQGNISAVPWWNELSEC 232 (265)
Q Consensus 156 ~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~-~~~~~~R~~T~liYLNDv~--eGGeT~Fp~~~~~~~~~~~~~~~~~c 232 (265)
+|... .+++|+||.+|++|++|+|+...... .....+|.+|+++||||++ +||||+|+...
T Consensus 75 lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~--------------- 138 (226)
T PRK05467 75 LPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY--------------- 138 (226)
T ss_pred ccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC---------------
Confidence 33333 47899999999999999999764210 1112356899999999875 89999998753
Q ss_pred CCCCeeEecCCceEEEEecC
Q 024600 233 GKTGLSIKPKMGDALLFWSM 252 (265)
Q Consensus 233 ~~~~l~V~Pk~G~AlvF~n~ 252 (265)
+...|+|++|++|+|++.
T Consensus 139 --g~~~Vkp~aG~~vlfps~ 156 (226)
T PRK05467 139 --GEHRVKLPAGDLVLYPST 156 (226)
T ss_pred --CcEEEecCCCeEEEECCC
Confidence 347899999999999974
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.48 E-value=2.5e-13 Score=125.07 Aligned_cols=135 Identities=17% Similarity=0.254 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCCcceeEeCCCC-CccccceeeccceeecCCccHHHHHHHHHHhhcc-CCC----CCCCcccEEEEcC
Q 024600 97 ECEYLINLATPHMRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT-FFP----LENGEGLQVLHYE 170 (265)
Q Consensus 97 EC~~Li~~a~~~l~~s~v~~~~~g-~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~~-~~p----~~~~E~lqv~rY~ 170 (265)
+.-.+|+...-.+.+|.+.+..+| +....++|+++++.++.. +.+.++|++-+.+-+ +.+ +..+|.++++||.
T Consensus 24 ~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~ 102 (354)
T PHA02813 24 IIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYE 102 (354)
T ss_pred HHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEEC
Confidence 333444433334677777775555 456789999999998854 456666666554333 333 4678999999999
Q ss_pred CCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCccccccccCCCCeeEecCCceEEEEe
Q 024600 171 AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 250 (265)
Q Consensus 171 ~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~ 250 (265)
+||+|.+|.|+.... ....+.+|+|+|||++++||||.|...+ .-+|. .|++|+|.
T Consensus 103 kGq~F~~H~Dg~~~r----~k~~s~~tLLLYLN~~~~GGeT~f~~~~------------------~tsI~--~g~dlLFd 158 (354)
T PHA02813 103 KGDFFNNHRDFIHFK----SKNCYCYHLVLYLNNTSKGGNTNIHIKD------------------NTIFS--TKNDVLFD 158 (354)
T ss_pred CCcccCcccCCceee----cCCceEEEEEEEEeccCCCCceEEEcCC------------------CceEe--ecceEEEe
Confidence 999999999986532 1123899999999999999999999752 12566 99999997
Q ss_pred c-CCCCC
Q 024600 251 S-MKPDA 256 (265)
Q Consensus 251 n-~~~dg 256 (265)
. +.+.|
T Consensus 159 h~l~Heg 165 (354)
T PHA02813 159 KTLNHSS 165 (354)
T ss_pred cccccCC
Confidence 4 44444
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.43 E-value=4.8e-13 Score=124.83 Aligned_cols=121 Identities=20% Similarity=0.284 Sum_probs=90.5
Q ss_pred CCcceeEeCCCCC-ccccceeeccceeecCCccHHHHHHHHHHhhc-----cCC--CCCCCcccEEEEcCCCCCcccCcc
Q 024600 109 MRKSTVVDSDTGK-SKDSRVRTSSGTFLARGRDKIIRDIEKRIADF-----TFF--PLENGEGLQVLHYEAGQKYEPHFD 180 (265)
Q Consensus 109 l~~s~v~~~~~g~-~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~-----~~~--p~~~~E~lqv~rY~~G~~y~~H~D 180 (265)
+.+|.+.+..+|. -.+...|.|.++.+.. .+.+.|.+|++.+ -+. .++.+|.++++||.+||+|++|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 4677787766663 3566779999888763 3445555555433 343 567899999999999999999999
Q ss_pred CCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCccccccccCCCCeeEecCCceEEEEe-cCCCCC
Q 024600 181 YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDA 256 (265)
Q Consensus 181 ~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~-n~~~dg 256 (265)
+... ..+....+|+|+|||++++||||.|+.. ...+|.|++| |+|. .+.+.|
T Consensus 122 g~~~----rs~e~s~~tLLLYLNd~~~GGET~f~~~------------------~~~sI~pksg--LLFdh~l~Heg 174 (418)
T PHA02869 122 FSTV----FSKNIICVHLLLYLEQPETGGETVIYID------------------NNTSVKLKTD--HLFDKTIEHES 174 (418)
T ss_pred Ccee----cCCCEEEEEEEEEEeccCCCCceEEEeC------------------CCceEecCCC--eEeccccccCC
Confidence 8653 2356778999999999999999999972 2467999999 7775 454554
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.18 E-value=2e-11 Score=93.67 Aligned_cols=73 Identities=36% Similarity=0.549 Sum_probs=49.1
Q ss_pred cEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCC---CCcceeccCCCCCCCCCCccccccccCCCCeeEe
Q 024600 164 LQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE---EGGETVFPNAQGNISAVPWWNELSECGKTGLSIK 240 (265)
Q Consensus 164 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~---eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V~ 240 (265)
.|+.+|.+|++|+||.|... ...+.+|+++|||+++ +||+|+|.... ..... .... ....++
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~~~--~~~~-----~~~~~~ 65 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSDDV--SREV-----EDFDIV 65 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--TSST--CEEE-----GGGSEE
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cCCCc--ceEE-----Eecccc
Confidence 47999999999999999753 3579999999999887 89999998743 00000 0000 011233
Q ss_pred cCCceEEEEec
Q 024600 241 PKMGDALLFWS 251 (265)
Q Consensus 241 Pk~G~AlvF~n 251 (265)
|+.|++|+|.+
T Consensus 66 p~~g~~v~F~~ 76 (100)
T PF13640_consen 66 PKPGRLVIFPS 76 (100)
T ss_dssp -BTTEEEEEES
T ss_pred CCCCEEEEEeC
Confidence 99999999998
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=98.88 E-value=1.7e-08 Score=85.85 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=91.6
Q ss_pred CEEEEcCCCCHHHHHHHHHHHcCCCCcceeEeCC-CCCccccceeeccceeecCCccHHHHHHHHHHhhc-------cC-
Q 024600 85 RAFVYHNFLSKEECEYLINLATPHMRKSTVVDSD-TGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADF-------TF- 155 (265)
Q Consensus 85 ~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~~~~-~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~-------~~- 155 (265)
..+-|+.+||+++|.++.+..+. +..+++. +.+..-..+|++..+-.+ +++.+.+.+-|.+. ++
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~----A~w~dGrat~g~q~a~vk~n~qlp~~---s~l~~~vg~~il~al~~~plff~a 75 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQ----AEWVDGRATQGPQGAQVKNNLQLPQD---SALARELGNEILQALTAHPLFFAA 75 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhh----ccccccccccCcchhhhhccccCCcc---cHHHHHHHHHHHHHHHhchhHHHh
Confidence 34668999999999999887653 2222222 111222344555433222 34444444433321 11
Q ss_pred -CCCCCCcccEEEEcCCCCCcccCccCCccccccCCC--CceEEEEEEecccCC--CCcceeccCCCCCCCCCCcccccc
Q 024600 156 -FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNG--GQRMATVLMYLSDVE--EGGETVFPNAQGNISAVPWWNELS 230 (265)
Q Consensus 156 -~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~--~~R~~T~liYLNDv~--eGGeT~Fp~~~~~~~~~~~~~~~~ 230 (265)
+|. .-++.+|.+|..|+.|.+|.|+.....+...+ -+..+++.++|+|++ +|||.+..+..
T Consensus 76 ALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY------------- 141 (229)
T COG3128 76 ALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY------------- 141 (229)
T ss_pred hccc-ccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccc-------------
Confidence 232 34679999999999999999987654222112 123467788999987 79999998764
Q ss_pred ccCCCCeeEecCCceEEEEecC
Q 024600 231 ECGKTGLSIKPKMGDALLFWSM 252 (265)
Q Consensus 231 ~c~~~~l~V~Pk~G~AlvF~n~ 252 (265)
+...|+-.+|++|+|++.
T Consensus 142 ----g~h~VklPAGdLVlypSt 159 (229)
T COG3128 142 ----GNHRVKLPAGDLVLYPST 159 (229)
T ss_pred ----cceEEeccCCCEEEcccc
Confidence 467899999999999865
No 9
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.62 E-value=4.7e-08 Score=70.95 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=44.2
Q ss_pred CcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecc----cCCCCcceeccCCC
Q 024600 161 GEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLS----DVEEGGETVFPNAQ 217 (265)
Q Consensus 161 ~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLN----Dv~eGGeT~Fp~~~ 217 (265)
.+.++.++|..|++|.+|+|..... .+.+|.+|++|||| +..+||++.|....
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 5679999999999999999987642 25789999999999 45679999998753
No 10
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=97.88 E-value=0.0002 Score=63.11 Aligned_cols=148 Identities=25% Similarity=0.386 Sum_probs=90.5
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHc-----CCCCcceeEeCCCCCccccceeeccceeecCCcc--HHH----HHHHHHHhh
Q 024600 84 PRAFVYHNFLSKEECEYLINLAT-----PHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD--KII----RDIEKRIAD 152 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~-----~~l~~s~v~~~~~g~~~~~~~RtS~~~~l~~~~d--~~v----~~i~~Ri~~ 152 (265)
=.+.+++|||-.+-=..+.+..+ +.+.+..++.+.. ...+++|.....|+.-.+. ..+ ..+..-+..
T Consensus 53 ~g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~--~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h 130 (280)
T KOG3710|consen 53 YGICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDA--FHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILH 130 (280)
T ss_pred cceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcC--CcchhhccCCceEecCCCCCccceeeecccchhhhhh
Confidence 35788999998876555544443 2355544443222 2334789999999975320 111 111111111
Q ss_pred c---cCCCCCCCcccEEEEcCC-CCCcccCccCCccccccCCCCceEEEEEEeccc---CC-CCc-ceeccCCCCCCCCC
Q 024600 153 F---TFFPLENGEGLQVLHYEA-GQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSD---VE-EGG-ETVFPNAQGNISAV 223 (265)
Q Consensus 153 ~---~~~p~~~~E~lqv~rY~~-G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND---v~-eGG-eT~Fp~~~~~~~~~ 223 (265)
. .+-..-.-..-.|..|.- |-.|-.|+|+.. +-.|..|++.|||. +. .|| --.||....
T Consensus 131 ~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~----- 198 (280)
T KOG3710|consen 131 CNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGST----- 198 (280)
T ss_pred hccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCC-----
Confidence 1 111111134567888984 678999999754 45699999999994 43 344 445777543
Q ss_pred CccccccccCCCCeeEecCCceEEEEecCCCCC
Q 024600 224 PWWNELSECGKTGLSIKPKMGDALLFWSMKPDA 256 (265)
Q Consensus 224 ~~~~~~~~c~~~~l~V~Pk~G~AlvF~n~~~dg 256 (265)
.-..|.|+-++.||||+-+.+-
T Consensus 199 -----------~~adieP~fdrLlffwSdrrnP 220 (280)
T KOG3710|consen 199 -----------TFADIEPKFDRLLFFWSDRRNP 220 (280)
T ss_pred -----------cccccCcCCCeEEEEEecCCCc
Confidence 2346999999999999988773
No 11
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=97.58 E-value=0.00026 Score=65.66 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=65.8
Q ss_pred cccceeeccceeecC-CccHHHHHHHHHHhhcc-C--CCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEE
Q 024600 123 KDSRVRTSSGTFLAR-GRDKIIRDIEKRIADFT-F--FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATV 198 (265)
Q Consensus 123 ~~~~~RtS~~~~l~~-~~d~~v~~i~~Ri~~~~-~--~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~ 198 (265)
.+...|.|+...+.. ..+++.++|++.+..-+ . -.+...+.+.+.+|+.|++|+.|.|.... ......-.++
T Consensus 36 ~d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~L 111 (339)
T PF03336_consen 36 FDHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHL 111 (339)
T ss_pred ccccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEE
Confidence 344478888877662 34678888877765432 2 12334678999999999999999994332 3445678999
Q ss_pred EEecccCCCCcceeccC
Q 024600 199 LMYLSDVEEGGETVFPN 215 (265)
Q Consensus 199 liYLNDv~eGGeT~Fp~ 215 (265)
++|||.+.+||+|.+.-
T Consensus 112 vLyL~~~~~GGktkiyi 128 (339)
T PF03336_consen 112 VLYLNNPENGGKTKIYI 128 (339)
T ss_pred EEEEeccCCCceEEEEE
Confidence 99999999999999873
No 12
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.55 E-value=0.0012 Score=60.15 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=67.1
Q ss_pred EEecCCCEEEEcCCCCHHHHHHHHHHHcCCCCcceeEeCCCCC--ccccceeeccceeecCCccHHHH------HHHHHH
Q 024600 79 VISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGK--SKDSRVRTSSGTFLARGRDKIIR------DIEKRI 150 (265)
Q Consensus 79 ~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~l~~s~v~~~~~g~--~~~~~~RtS~~~~l~~~~d~~v~------~i~~Ri 150 (265)
....+-+ +++++||+++||+.|.+..+..+..........+. ......|. .+.....++.+. .|.+.+
T Consensus 24 ~f~~dGy-vvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~l~~~p~l~~~~ 99 (277)
T TIGR02408 24 SYERDGF-LLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRS---IFEVHVLSPILARLVRDPRVANAA 99 (277)
T ss_pred HHHHCCE-EECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEE---EecccccCHHHHHHHcChHHHHHH
Confidence 3344454 68999999999999999876543221110000000 00011221 111111234332 344555
Q ss_pred hhccCCCCCCCcccEEEEcC-CCCCcccCccCCccccccCCCCceEEEEEEecccCCC-Ccceec-cCC
Q 024600 151 ADFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEE-GGETVF-PNA 216 (265)
Q Consensus 151 ~~~~~~p~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~e-GGeT~F-p~~ 216 (265)
++++|-++-.....-+.++. .|+.+.||.|+..-.........+.+|+.++|.|+.+ .|.+.| |-.
T Consensus 100 ~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGS 168 (277)
T TIGR02408 100 RQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGS 168 (277)
T ss_pred HHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCC
Confidence 56666443221111123444 3567899999642100000112368999999999874 477776 443
No 13
>PHA02866 Hypothetical protein; Provisional
Probab=97.07 E-value=0.0011 Score=60.46 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=66.5
Q ss_pred CCcceeEeCCCC-CccccceeeccceeecCCccHHHHHHHHHHhhcc--CCCCCCCcccEEEEcCCCCCcccCccCCccc
Q 024600 109 MRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT--FFPLENGEGLQVLHYEAGQKYEPHFDYFMDE 185 (265)
Q Consensus 109 l~~s~v~~~~~g-~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~~--~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~ 185 (265)
+.+|.+.+.+.| ...+...|.+++. ++++.++. |+..+. ..++-..+-+.+.+|..|.+|.-|.|-...+
T Consensus 32 w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~ 104 (333)
T PHA02866 32 WEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED 104 (333)
T ss_pred cchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec
Confidence 667777654444 3344555666543 56677665 444432 2223345679999999999999999875532
Q ss_pred cccCCCCceEEEEEEecccCCCCcceeccC
Q 024600 186 FNTKNGGQRMATVLMYLSDVEEGGETVFPN 215 (265)
Q Consensus 186 ~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~ 215 (265)
....+-.++++||+.+.+||+|.++-
T Consensus 105 ----~~~~~~Y~LvLyL~~p~~GGkt~iyv 130 (333)
T PHA02866 105 ----RHRGREYTLVLHLSSPKNGGKTDVCV 130 (333)
T ss_pred ----cCCceEEEEEEEEeccccCCceEEEe
Confidence 23457789999999999999999984
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.01 E-value=0.0026 Score=53.36 Aligned_cols=160 Identities=19% Similarity=0.076 Sum_probs=77.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHcCC----CCc---ceeEeCCCCCccccceeeccceeecCCc---cHHH-H-HHHHHHhhc
Q 024600 86 AFVYHNFLSKEECEYLINLATPH----MRK---STVVDSDTGKSKDSRVRTSSGTFLARGR---DKII-R-DIEKRIADF 153 (265)
Q Consensus 86 i~vi~nfLs~~EC~~Li~~a~~~----l~~---s~v~~~~~g~~~~~~~RtS~~~~l~~~~---d~~v-~-~i~~Ri~~~ 153 (265)
.++++|+|+++||+.|.+..+.. ... ...... +... .....++.... +.+. . .+.+.+.++
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFD--ESFF-----GDYTEQLAKSPNFYDLFLHPPRILDLVRAL 78 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEES--TSCC-----CTCCCCGCCCHHHHHHHHTHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccc--cccc-----cccccccccchhhHHHHhhHHHHHHHHHHh
Confidence 57899999999999998887642 111 111110 0000 00011111100 1111 2 455556666
Q ss_pred cCCCCC----CCcccE-EEEcC-CCCCc-ccCccCCccccccCCCCceEEEEEEecccCC-CCcceec-cCCCCCCCC--
Q 024600 154 TFFPLE----NGEGLQ-VLHYE-AGQKY-EPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNISA-- 222 (265)
Q Consensus 154 ~~~p~~----~~E~lq-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~~~-- 222 (265)
+|-+.. ....++ +.+-. +|... .||.|...-.. ....+.+|+.++|.|+. +.|.+.+ |........
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~ 155 (211)
T PF05721_consen 79 LGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPH 155 (211)
T ss_dssp HTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEE
T ss_pred hCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCcccc
Confidence 665431 112221 23322 46665 99999654211 11578999999999985 5566666 433221000
Q ss_pred ---CCcccccc-------ccCCCCeeEecCCceEEEEecCCCC
Q 024600 223 ---VPWWNELS-------ECGKTGLSIKPKMGDALLFWSMKPD 255 (265)
Q Consensus 223 ---~~~~~~~~-------~c~~~~l~V~Pk~G~AlvF~n~~~d 255 (265)
.+.+.... ......+.+..++|++|||....-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H 198 (211)
T PF05721_consen 156 EERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIH 198 (211)
T ss_dssp CCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEE
T ss_pred cccccccccccccccccccccCceEEeecCCCeEEEEcCCccc
Confidence 00000000 1123457899999999999765443
No 15
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.01 Score=53.33 Aligned_cols=75 Identities=31% Similarity=0.324 Sum_probs=57.2
Q ss_pred ccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEeccc---CCCCcce-eccCCCCCCCCCCccccccccCCCCee
Q 024600 163 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSD---VEEGGET-VFPNAQGNISAVPWWNELSECGKTGLS 238 (265)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND---v~eGGeT-~Fp~~~~~~~~~~~~~~~~~c~~~~l~ 238 (265)
..|+..|.+|.+|..|-|.+.+ ...|.+|.++|+|. .+-|||. .|+....+... ...-..
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~----------~~~~~t 200 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTA----------ADSFKT 200 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeecccccccccc----------cccccc
Confidence 6999999999999999998863 46799999999997 4679999 78876532110 012357
Q ss_pred EecCCceEEEEecCC
Q 024600 239 IKPKMGDALLFWSMK 253 (265)
Q Consensus 239 V~Pk~G~AlvF~n~~ 253 (265)
|.|+-+..++|-+-.
T Consensus 201 i~P~fn~lv~F~s~~ 215 (252)
T COG3751 201 IAPVFNSLVFFKSRP 215 (252)
T ss_pred cCCCCceEEEEEecC
Confidence 889999988886543
No 16
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=96.46 E-value=0.001 Score=50.48 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=41.7
Q ss_pred cccEEEEcC---CCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCccccccccCCCCee
Q 024600 162 EGLQVLHYE---AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLS 238 (265)
Q Consensus 162 E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~ 238 (265)
+.+++.+|. .+..+.+|.|.. ++.+|++++ .++|++.|...+ ..+.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-----------------~~~~ 50 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-----------------EWVD 50 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-----------------EEEE
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-----------------cccC
Confidence 468999999 888999999964 467999998 678899998653 2456
Q ss_pred EecCCceEEEEe-cCC--CCCCCCCCCCC
Q 024600 239 IKPKMGDALLFW-SMK--PDASLDPSSLH 264 (265)
Q Consensus 239 V~Pk~G~AlvF~-n~~--~dg~~D~~slH 264 (265)
|.|..+..++.. ++. -.+...+.++|
T Consensus 51 v~~~~~~~~v~~G~~l~~~t~g~~~~~~H 79 (98)
T PF03171_consen 51 VPPPPGGFIVNFGDALEILTNGRYPATLH 79 (98)
T ss_dssp ----TTCEEEEEBHHHHHHTTTSS----E
T ss_pred ccCccceeeeeceeeeecccCCccCCcee
Confidence 666666555543 412 23444556666
No 17
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=96.05 E-value=0.012 Score=45.32 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=42.1
Q ss_pred EEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCC-CCc-cccccccCCCCeeEecCC
Q 024600 166 VLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISA-VPW-WNELSECGKTGLSIKPKM 243 (265)
Q Consensus 166 v~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~-~~~-~~~~~~c~~~~l~V~Pk~ 243 (265)
+..|..|++-.+|.= ....++.++||+.+++.|.+.|.+....... .+. +............|+|+.
T Consensus 4 ~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 72 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEE 72 (101)
T ss_dssp EEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---T
T ss_pred EEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCC
Confidence 456778888777732 2346899999999888899999765432211 111 111111123457899999
Q ss_pred ceEEEEecCCCCC
Q 024600 244 GDALLFWSMKPDA 256 (265)
Q Consensus 244 G~AlvF~n~~~dg 256 (265)
|++|||++...++
T Consensus 73 G~lvlFPs~l~H~ 85 (101)
T PF13759_consen 73 GDLVLFPSWLWHG 85 (101)
T ss_dssp TEEEEEETTSEEE
T ss_pred CEEEEeCCCCEEe
Confidence 9999999876553
No 18
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=95.89 E-value=0.27 Score=45.12 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=63.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHHcCCCC-cceeEeCCCCCccccceeeccceeecCCccHHH------HHHHHHHhhccCCC
Q 024600 85 RAFVYHNFLSKEECEYLINLATPHMR-KSTVVDSDTGKSKDSRVRTSSGTFLARGRDKII------RDIEKRIADFTFFP 157 (265)
Q Consensus 85 ~i~vi~nfLs~~EC~~Li~~a~~~l~-~s~v~~~~~g~~~~~~~RtS~~~~l~~~~d~~v------~~i~~Ri~~~~~~p 157 (265)
..++++++||++|++.|.+.++..+. +.... ..... ...|.. |-....++.+ ..|...+++++|-+
T Consensus 15 Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~-~~~~~---~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~llG~~ 87 (288)
T TIGR01762 15 GFIGPFTLYSPEEMKETWKRIRLRLLDRSAAP-YQDLG---GTNIAN---YDRHLDDDFLASHICRPEICHRVESILGPN 87 (288)
T ss_pred CEEeCcCCCCHHHHHHHHHHHHHHhhcccccc-ccCCC---CceeEe---eeecccCHHHHHHhcCHHHHHHHHHHhCCc
Confidence 34679999999999999988754321 11100 00000 111111 1111112222 33445556666654
Q ss_pred CCCCcccEEEEcCCCCCcccCccCCccccc--------cCCCCceEEEEEEecccCC-CCcceec
Q 024600 158 LENGEGLQVLHYEAGQKYEPHFDYFMDEFN--------TKNGGQRMATVLMYLSDVE-EGGETVF 213 (265)
Q Consensus 158 ~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~--------~~~~~~R~~T~liYLNDv~-eGGeT~F 213 (265)
+-..-.--+.++..++.+.||.|...-... ......+.+|+.+-|.|+. +-|.+.|
T Consensus 88 v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~v 152 (288)
T TIGR01762 88 VLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQF 152 (288)
T ss_pred EEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEE
Confidence 432222234455545558999995431100 0112247899999999986 4566666
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=95.58 E-value=0.12 Score=45.13 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=53.6
Q ss_pred cccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCC--CCCCccccccccCCCCeeE
Q 024600 162 EGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI--SAVPWWNELSECGKTGLSI 239 (265)
Q Consensus 162 E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~--~~~~~~~~~~~c~~~~l~V 239 (265)
...-+.++..|++-..|.= .+..+|-.+||+.+..+|...|.+..... ...+.-..........+.|
T Consensus 96 ~~~W~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v 164 (201)
T TIGR02466 96 QKAWVNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYV 164 (201)
T ss_pred eeEeEEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEE
Confidence 4566778889998877743 23478999999998888999986543211 0000000000011234579
Q ss_pred ecCCceEEEEecCCCCC
Q 024600 240 KPKMGDALLFWSMKPDA 256 (265)
Q Consensus 240 ~Pk~G~AlvF~n~~~dg 256 (265)
+|+.|++|+|++...++
T Consensus 165 ~P~~G~lvlFPS~L~H~ 181 (201)
T TIGR02466 165 PPQEGRVLLFESWLRHE 181 (201)
T ss_pred CCCCCeEEEECCCCcee
Confidence 99999999999876654
No 20
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=94.51 E-value=0.56 Score=39.62 Aligned_cols=138 Identities=21% Similarity=0.221 Sum_probs=66.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHcCC--CCcceeEeCCCCCcccc---------------ceeeccc-eeecCCc---cHHHH
Q 024600 86 AFVYHNFLSKEECEYLINLATPH--MRKSTVVDSDTGKSKDS---------------RVRTSSG-TFLARGR---DKIIR 144 (265)
Q Consensus 86 i~vi~nfLs~~EC~~Li~~a~~~--l~~s~v~~~~~g~~~~~---------------~~RtS~~-~~l~~~~---d~~v~ 144 (265)
+++++||||++|.++|++..... +...... .++.... .++-+.. .+-...- -+.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYP---MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC---CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc---CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 67899999999999999987621 1111110 0111000 0111100 0000000 12345
Q ss_pred HHHHHHhhccC-CCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCC
Q 024600 145 DIEKRIADFTF-FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAV 223 (265)
Q Consensus 145 ~i~~Ri~~~~~-~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~ 223 (265)
.+.+++....+ .+........+..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-.-+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~---- 142 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS---- 142 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG----
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc----
Confidence 55555554333 22223346788899999999999997631 23567788776 344444321110
Q ss_pred CccccccccCCCCeeEecCCceEEEEe
Q 024600 224 PWWNELSECGKTGLSIKPKMGDALLFW 250 (265)
Q Consensus 224 ~~~~~~~~c~~~~l~V~Pk~G~AlvF~ 250 (265)
+ .+..+.|.-..|+++++.
T Consensus 143 -------~-~~~~~~~~L~~gsl~vm~ 161 (194)
T PF13532_consen 143 -------D-DDEPIEVPLPPGSLLVMS 161 (194)
T ss_dssp -------G-TS-EEEEEE-TTEEEEEE
T ss_pred -------C-CCccEEEEcCCCCEEEeC
Confidence 0 013467888899999886
No 21
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=93.80 E-value=0.11 Score=43.90 Aligned_cols=74 Identities=24% Similarity=0.374 Sum_probs=52.6
Q ss_pred ccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccC---CCCcceeccCCCCCCCCCCccccccccCCCCeeE
Q 024600 163 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV---EEGGETVFPNAQGNISAVPWWNELSECGKTGLSI 239 (265)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv---~eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V 239 (265)
..-+++|++|++=..|.|..-+-. =-+-+.+-||++ ++|||.+.-.-..... .....+
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~Q------------SR~~V~ 123 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRMQ------------SRAMVL 123 (173)
T ss_pred chhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCcc------------CccccC
Confidence 467899999999999999643210 014577889985 5899999965433221 135789
Q ss_pred ecCCceEEEEe-cCCCC
Q 024600 240 KPKMGDALLFW-SMKPD 255 (265)
Q Consensus 240 ~Pk~G~AlvF~-n~~~d 255 (265)
.+++|+|+||. |.+|-
T Consensus 124 ~L~qGda~if~t~~RPv 140 (173)
T PF09859_consen 124 PLRQGDALIFATNHRPV 140 (173)
T ss_pred CcCCCCEEEEecCCCCc
Confidence 99999999996 55543
No 22
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.55 Score=40.17 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=57.0
Q ss_pred EEecCCCEEEEcCCCCHHHHHHHHHHHcCCCCcc-------eeEeCCCCCccccceeeccceeecCCccHHHHHHHHHHh
Q 024600 79 VISWEPRAFVYHNFLSKEECEYLINLATPHMRKS-------TVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIA 151 (265)
Q Consensus 79 ~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~l~~s-------~v~~~~~g~~~~~~~RtS~~~~l~~~~d~~v~~i~~Ri~ 151 (265)
++...|.+++|+||+++||-..+.+..+..-++- ..++ -|.-+ -....++..--+..+.+...|.
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqN--yGGvv------h~~glipeelP~wLq~~v~kin 78 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQN--YGGVV------HKTGLIPEELPPWLQYYVDKIN 78 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhh--cCCcc------ccCCcCccccCHHHHHHHHHhh
Confidence 3456789999999999999999988876432211 0000 01100 0111233222355666667776
Q ss_pred hccCCCCCCCcccEEEEcCCCCCcccCccCC
Q 024600 152 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYF 182 (265)
Q Consensus 152 ~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~ 182 (265)
.+--++. .....-|..|.+||---||.|+.
T Consensus 79 nlglF~s-~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 79 NLGLFKS-PANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred cccccCC-CcceeEeecccCCCCcCcCCCCC
Confidence 5432332 23356778899999999999974
No 23
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=89.41 E-value=7 Score=34.46 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCC
Q 024600 142 IIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNIS 221 (265)
Q Consensus 142 ~v~~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~ 221 (265)
.+..|.++++...+++.-..+..-|..|.+|+.-.+|.|..... ...-++++.+ |.+-.|-.-....
T Consensus 96 ~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~~~- 162 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGLKR- 162 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEecccCC-
Confidence 57778888887777644445578899999999999999964221 1234555554 4444453321100
Q ss_pred CCCccccccccCCCCeeEecCCceEEEEe
Q 024600 222 AVPWWNELSECGKTGLSIKPKMGDALLFW 250 (265)
Q Consensus 222 ~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~ 250 (265)
.....+|.-.-|++||+-
T Consensus 163 -----------~~~~~~l~L~~Gdllvm~ 180 (213)
T PRK15401 163 -----------SDPLQRILLEHGDVVVWG 180 (213)
T ss_pred -----------CCceEEEEeCCCCEEEEC
Confidence 012357888888888873
No 24
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=87.51 E-value=6.3 Score=37.90 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=43.5
Q ss_pred HHHHHHhhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCC----CCcceec-cCC
Q 024600 145 DIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE----EGGETVF-PNA 216 (265)
Q Consensus 145 ~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~----eGGeT~F-p~~ 216 (265)
....-+..++|--...--.+-...|..|.+--.|-|-. +.|.+++++||-|.. -||+... |..
T Consensus 100 e~r~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d 167 (476)
T KOG3844|consen 100 EARGEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDD 167 (476)
T ss_pred HHHHHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccc
Confidence 33444555664332223367888999999999998854 468899999999875 3787774 443
No 25
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=78.45 E-value=3.2 Score=37.19 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=52.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcCC-CCcceeE--eCCCCCcc---ccceeeccceeecCCccHHHHHHHHHHhhccCC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATPH-MRKSTVV--DSDTGKSK---DSRVRTSSGTFLARGRDKIIRDIEKRIADFTFF 156 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~~-l~~s~v~--~~~~g~~~---~~~~RtS~~~~l~~~~d~~v~~i~~Ri~~~~~~ 156 (265)
-|.+.+++||||.+|=..|++..... +..|.-. ...-|..+ ....|+..-+-++ ...+.+.+|+.++..+
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~P----~~~~~v~rrm~~yp~l 146 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGMP----EYADMVLRRMSEYPVL 146 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCCc----hHHHHHHHHhhccchh
Confidence 47899999999999999999987643 2111110 00112112 1233444333333 3566777788776432
Q ss_pred CCCCCcccE--EEEcCC--CCCcccCccCCc
Q 024600 157 PLENGEGLQ--VLHYEA--GQKYEPHFDYFM 183 (265)
Q Consensus 157 p~~~~E~lq--v~rY~~--G~~y~~H~D~~~ 183 (265)
.. ..++. =+-|++ |.--.||.|-..
T Consensus 147 ~g--fqp~EqCnLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 147 KG--FQPFEQCNLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hc--cCcHHHcCcccccccCCccCccccchh
Confidence 11 00111 123664 788999999543
No 26
>PHA02923 hypothetical protein; Provisional
Probab=76.41 E-value=8.5 Score=35.57 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHhhccCC--CCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCC
Q 024600 140 DKIIRDIEKRIADFTFF--PLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQ 217 (265)
Q Consensus 140 d~~v~~i~~Ri~~~~~~--p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~ 217 (265)
+.+..+|++.|-+-+.. .+.....+.+..|++|.+ .|. . ....-..+++||+.+.+||+|.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l---------~-~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL---------T-DDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee---------e-cCceEEEEEEEEeccCCCCeEEEecCC
Confidence 56777777776543222 122344699999999985 111 0 123678899999999999999998876
Q ss_pred C
Q 024600 218 G 218 (265)
Q Consensus 218 ~ 218 (265)
.
T Consensus 111 t 111 (315)
T PHA02923 111 T 111 (315)
T ss_pred C
Confidence 4
No 27
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=72.76 E-value=55 Score=28.44 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHHHHHHhhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCC
Q 024600 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISA 222 (265)
Q Consensus 143 v~~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~ 222 (265)
.-.+...+....|.+....|..-+..|.+|..-.+|.|..... ...-++++-+=. ...|-.-...
T Consensus 87 l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSLg~-------~~~F~~~~~~--- 151 (194)
T COG3145 87 LLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSLGA-------PCIFRLRGRR--- 151 (194)
T ss_pred cHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEecCC-------CeEEEecccc---
Confidence 3345555666778887777889999999999999999965421 111245555422 2223211100
Q ss_pred CCccccccccCCCCeeEecCCceEEEEe
Q 024600 223 VPWWNELSECGKTGLSIKPKMGDALLFW 250 (265)
Q Consensus 223 ~~~~~~~~~c~~~~l~V~Pk~G~AlvF~ 250 (265)
. .+...++.=..|++|++-
T Consensus 152 --------r-~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 152 --------R-RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred --------C-CCCceeEEecCCCEEEec
Confidence 0 023577888889998873
No 28
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=72.40 E-value=33 Score=28.98 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCC
Q 024600 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI 220 (265)
Q Consensus 141 ~~v~~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~ 220 (265)
+.+..|.++++..++++....+..-|..|.+|+.-.+|.|.... ....-++++.+ |...+|-.-....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~-----~~~~pI~SvSL-------G~~r~F~~~~~~~ 141 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEP-----DLRAPLLSVSL-------GLPAIFLIGGLKR 141 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccc-----cCCCCEEEEeC-------CCCEEEEecCCcC
Confidence 56788888998888875555667888999999999999994221 11234455543 3444443321100
Q ss_pred CCCCccccccccCCCCeeEecCCceEEEEe
Q 024600 221 SAVPWWNELSECGKTGLSIKPKMGDALLFW 250 (265)
Q Consensus 221 ~~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~ 250 (265)
.+...++.-.-|++||+.
T Consensus 142 ------------~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 142 ------------NDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred ------------CCceEEEEeCCCCEEEEC
Confidence 012467888999999874
No 29
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=65.79 E-value=28 Score=31.44 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhccCCCCC--------CCcccEEEEcCCC------CCcccCccCC
Q 024600 141 KIIRDIEKRIADFTFFPLE--------NGEGLQVLHYEAG------QKYEPHFDYF 182 (265)
Q Consensus 141 ~~v~~i~~Ri~~~~~~p~~--------~~E~lqv~rY~~G------~~y~~H~D~~ 182 (265)
.+..+|.+-++..+|++.+ ....+++.+|.+- --..+|.|+.
T Consensus 87 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g 142 (262)
T PLN03001 87 ALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG 142 (262)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC
Confidence 3445555555556676531 1234789999762 1246788854
No 30
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.32 E-value=14 Score=32.02 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=47.4
Q ss_pred ccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCC---CCcceeccCCCCCCCCCCccccccccCCCCeeE
Q 024600 163 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE---EGGETVFPNAQGNISAVPWWNELSECGKTGLSI 239 (265)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~---eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V 239 (265)
..-++.|++|.+=-.|.|-.-+- -=-+-+.|-|+|++ .|||.+.-.-..... ..+-.|
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~Q------------Sr~~vv 185 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRMQ------------SRPTVV 185 (236)
T ss_pred CceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEecccccc------------cCCcee
Confidence 46688999999999999954320 01245677899875 799988754432211 134578
Q ss_pred ecCCceEEEEe
Q 024600 240 KPKMGDALLFW 250 (265)
Q Consensus 240 ~Pk~G~AlvF~ 250 (265)
.-.+|++++|-
T Consensus 186 pLrqG~g~vFa 196 (236)
T COG3826 186 PLRQGDGVVFA 196 (236)
T ss_pred eccCCceEEEE
Confidence 88899999995
No 31
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=64.09 E-value=35 Score=32.09 Aligned_cols=23 Identities=4% Similarity=-0.154 Sum_probs=18.2
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHc
Q 024600 84 PRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
-...++..=++.+.++++.+.++
T Consensus 60 GFF~v~nHGI~~~li~~~~~~s~ 82 (341)
T PLN02984 60 GIFRLENHGIPLTLMSQLKEISE 82 (341)
T ss_pred cEEEEECCCCCHHHHHHHHHHHH
Confidence 34567777889999999988875
No 32
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=62.70 E-value=21 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHH
Q 024600 1 MAKPRYSRFPTRKSSSSTLILTLL 24 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (265)
|+|.|..+-.......+.+.++=|
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaDl 24 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYADL 24 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHH
Confidence 777776333344444554554433
No 33
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=59.67 E-value=39 Score=30.77 Aligned_cols=83 Identities=22% Similarity=0.375 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHhhccCCCCCCCcccEEEEcCCCCCccc-CccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCC
Q 024600 140 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEP-HFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQG 218 (265)
Q Consensus 140 d~~v~~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~-H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~ 218 (265)
..+++.|++.+.+- +-..+.+++..|+.||-++. +.+ ..+..++++-|+-...||..++.....
T Consensus 32 ~~i~~EI~kh~~e~----V~~~~~i~i~~f~~~~~~~~~~~~-----------~~~~sr~lvCi~sakkGG~iii~~~~~ 96 (266)
T PF06822_consen 32 KIILSEIEKHINEP----VYVNNLISIQVFDKGQCYKSRIQD-----------NSSLSRILVCIQSAKKGGCIIIRNTIS 96 (266)
T ss_pred HHHHHHHHHhcCCe----EEecCcEEEEEEeCCCceeccccC-----------CCcceeEEEEeeccccCCeEEEeeccc
Confidence 46777777777433 22356899999999998743 222 345778999999999999998876432
Q ss_pred CCCCCCccccccccCCCCeeEecCCceEEEEecC
Q 024600 219 NISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 252 (265)
Q Consensus 219 ~~~~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~n~ 252 (265)
+ ..-.++|..|.||+-.++
T Consensus 97 ~---------------~kkii~~~~~~aVlLspl 115 (266)
T PF06822_consen 97 N---------------DKKIITPNQNMAVLLSPL 115 (266)
T ss_pred C---------------CceEEecCCCeEEEecch
Confidence 2 346799999999886543
No 34
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=58.57 E-value=20 Score=30.29 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=41.7
Q ss_pred CcccCccCCccccccCCCCceEEEEEEecccC-CCCcceeccCCCCCCCCCCccccccccCCCCeeEecCCceEEEEe-c
Q 024600 174 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV-EEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-S 251 (265)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv-~eGGeT~Fp~~~~~~~~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~-n 251 (265)
....|.|... .+--+++++-|.-. .+||..++|..+.+ -.|++|.|..|++|+|- +
T Consensus 86 ~t~~HrD~~~--------~~~~~~~~~t~~~gd~~~g~l~lp~~~~~--------------~~g~~~~~~~GtVl~~~~~ 143 (171)
T PF12851_consen 86 CTHSHRDTHN--------MPNGYDVLCTLGRGDYDGGRLELPGLDPN--------------ILGVAFAYQPGTVLIFCAK 143 (171)
T ss_pred CccceecCCC--------CCCCeEEEEecCCccccCceEeccccccc--------------cCCEEEecCCCcEEEEccc
Confidence 4567888643 12236666666543 78999999983322 24899999999999996 4
Q ss_pred CCCCCC
Q 024600 252 MKPDAS 257 (265)
Q Consensus 252 ~~~dg~ 257 (265)
...+|.
T Consensus 144 ~~~Hgv 149 (171)
T PF12851_consen 144 RELHGV 149 (171)
T ss_pred ceeeec
Confidence 445553
No 35
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=57.40 E-value=53 Score=30.72 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCcccEEEEcCC------CCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCCCCCCCccccccccC
Q 024600 160 NGEGLQVLHYEA------GQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECG 233 (265)
Q Consensus 160 ~~E~lqv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~~~~~~~~~~~~~c~ 233 (265)
.++-++++||.. ++.-..|.|+.. +|+| --...||=-+.+...
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~------------lTLl---~Qd~~~GLqv~~~~g---------------- 220 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYGL------------LTLL---FQDDVGGLEVRPPNG---------------- 220 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCCe------------EEEE---EecccCCeEEecCCC----------------
Confidence 356799999983 344578888753 3333 334557777777642
Q ss_pred CCCeeEecCCceEEEEe
Q 024600 234 KTGLSIKPKMGDALLFW 250 (265)
Q Consensus 234 ~~~l~V~Pk~G~AlvF~ 250 (265)
+.+.|.|..|..||..
T Consensus 221 -~Wl~v~P~pgtlvVNi 236 (322)
T COG3491 221 -GWLDVPPIPGTLVVNI 236 (322)
T ss_pred -CeeECCCCCCeEEEeH
Confidence 4688999999988863
No 36
>PLN02485 oxidoreductase
Probab=54.96 E-value=40 Score=31.25 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHc
Q 024600 84 PRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
-..++...=++.+.++++.+.++
T Consensus 46 GFf~l~nHGi~~~l~~~~~~~~~ 68 (329)
T PLN02485 46 GFFYVKGHGISDSLIKKVREVTH 68 (329)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
Confidence 34444555567777777776664
No 37
>PLN02904 oxidoreductase
Probab=54.79 E-value=55 Score=30.90 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=19.2
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...++..=++.+.++++.+.++.
T Consensus 80 ~GFf~v~nHGI~~~li~~~~~~~~~ 104 (357)
T PLN02904 80 FGFFQVINHGIPSSVVKDALDAATR 104 (357)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHH
Confidence 4556677778899999999887753
No 38
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=53.31 E-value=68 Score=29.92 Aligned_cols=25 Identities=20% Similarity=0.030 Sum_probs=19.2
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...++..=++.+.++++.+.++.
T Consensus 62 ~GFf~v~nHGI~~~l~~~~~~~~~~ 86 (337)
T PLN02639 62 YGFFQVINHGVSAELVEKMLAVAHE 86 (337)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4556677777899999999888753
No 39
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=51.40 E-value=53 Score=30.13 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=21.2
Q ss_pred HHHHHHHhhccCC-CCC----CCcccEEEEcCCC-----C-CcccCccCC
Q 024600 144 RDIEKRIADFTFF-PLE----NGEGLQVLHYEAG-----Q-KYEPHFDYF 182 (265)
Q Consensus 144 ~~i~~Ri~~~~~~-p~~----~~E~lqv~rY~~G-----~-~y~~H~D~~ 182 (265)
..|.+-++..+|+ +.+ ....+++.+|.+- + --.+|.|+.
T Consensus 126 ~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g 175 (300)
T PLN02365 126 MDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG 175 (300)
T ss_pred HHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC
Confidence 3444444455677 432 2236889999542 1 245777753
No 40
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=49.89 E-value=78 Score=29.92 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHc
Q 024600 84 PRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
-+..++..=++++.++.+.+.++
T Consensus 79 GFF~vvnHGI~~~l~~~~~~~~~ 101 (358)
T PLN02254 79 GVFQVTNHGIPLSLLDDIESQTR 101 (358)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHH
Confidence 34456666678888888887764
No 41
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=49.76 E-value=30 Score=34.39 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=42.9
Q ss_pred ccCccCCccccccCCCCceEEEEEEecccCC-CCcceeccCCCC-CC-------C--CCCccccc------cccCCCCee
Q 024600 176 EPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVFPNAQG-NI-------S--AVPWWNEL------SECGKTGLS 238 (265)
Q Consensus 176 ~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~Fp~~~~-~~-------~--~~~~~~~~------~~c~~~~l~ 238 (265)
.||+++.. +.+-.+|.|.|+.-.. ......|-.... .. . ...++... ..|-..-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 69998765 4578899999997432 345666654331 10 0 01111111 112111227
Q ss_pred EecCCceEEEEecCCCC
Q 024600 239 IKPKMGDALLFWSMKPD 255 (265)
Q Consensus 239 V~Pk~G~AlvF~n~~~d 255 (265)
|.-+.|++|+|+|+..+
T Consensus 437 v~~~~gr~i~fPN~~qh 453 (501)
T PF14033_consen 437 VETKEGRLIAFPNTLQH 453 (501)
T ss_pred EEccCCcEEeccchhhh
Confidence 88899999999998765
No 42
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.70 E-value=39 Score=31.27 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=41.5
Q ss_pred CcccCccCCccccccCCCCceEEEEEEecccCC-CCcceec-cCCCCCCCCCCcccccc-ccCCCCeeEecCCceEEEEe
Q 024600 174 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNISAVPWWNELS-ECGKTGLSIKPKMGDALLFW 250 (265)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~-eGGeT~F-p~~~~~~~~~~~~~~~~-~c~~~~l~V~Pk~G~AlvF~ 250 (265)
.=.||.|+... ..+..-...+.+=|-|.. +-|.|.+ |.... ....|.|.+++ --....+-|.=.+|+||+|.
T Consensus 132 ~t~~HqD~~~~----~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~-~~~~~~r~d~~~y~~~~~~pv~lekGDallF~ 206 (299)
T COG5285 132 ATRWHQDYPLV----SPGYPALVNAWIALCDFTEDNGATLVVPGSHK-WDVIPERPDHETYLERNAVPVELEKGDALLFN 206 (299)
T ss_pred ccccccccccc----cCCccceEEEEEeccccccccCceEEEecccc-cccCCCCCCccchhhhcceeeeecCCCEEEEc
Confidence 35789996543 223444567788888865 5677776 54432 11112232221 11123677888999999995
No 43
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=47.01 E-value=94 Score=29.07 Aligned_cols=24 Identities=13% Similarity=-0.123 Sum_probs=16.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHc
Q 024600 83 EPRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
.-...++..=++.+.++.+.+.++
T Consensus 54 ~GFf~v~nHGi~~~l~~~~~~~~~ 77 (345)
T PLN02750 54 WGFFQVINHGVPSELRQRVEKVAK 77 (345)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHH
Confidence 344556666678888888888765
No 44
>PLN02947 oxidoreductase
Probab=46.12 E-value=88 Score=29.76 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=17.7
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 84 PRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
-...++..=++++.++.+.+.++.
T Consensus 95 GFF~v~nHGIp~~li~~~~~~~~~ 118 (374)
T PLN02947 95 GFFQVVNHGVPSEVIGGMIDVARR 118 (374)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHH
Confidence 445567677899999988887653
No 45
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=45.96 E-value=48 Score=30.81 Aligned_cols=24 Identities=8% Similarity=-0.063 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 84 PRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
-...+...=++.+.++++.+.++.
T Consensus 35 GFF~v~nHGI~~~l~~~~~~~~~~ 58 (321)
T PLN02299 35 GFFELVNHGISHELMDEVEKMTKE 58 (321)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Confidence 445556566788899888887753
No 46
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=45.91 E-value=94 Score=29.20 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=19.5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...++..-++.++++.+.+.++.
T Consensus 69 ~GFf~v~nHGI~~~l~~~~~~~~~~ 93 (348)
T PLN02912 69 YGFFQIKNHGVPEETIKKMMNVARE 93 (348)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 4556677778899999999988754
No 47
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=44.73 E-value=34 Score=23.93 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhccc
Q 024600 12 RKSSSSTLILTLLIMFTFAILILLAFGIL 40 (265)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (265)
+-|.-+||++.++.+.+|++.+-+-++|+
T Consensus 13 kFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 13 KFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777899999988888888777766664
No 48
>PLN02276 gibberellin 20-oxidase
Probab=44.07 E-value=1.1e+02 Score=28.94 Aligned_cols=25 Identities=4% Similarity=-0.217 Sum_probs=18.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...++..=++.+.++.+.+.++.
T Consensus 71 ~GFF~l~nHGI~~~l~~~~~~~~~~ 95 (361)
T PLN02276 71 HGFFQVVNHGVDAALIRAAHEYMDA 95 (361)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3555667777899999999888753
No 49
>PTZ00273 oxidase reductase; Provisional
Probab=43.74 E-value=1.1e+02 Score=28.06 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=13.1
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHc
Q 024600 84 PRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
-..++...=++.+.++.+.+.++
T Consensus 37 Gff~v~nhgi~~~l~~~~~~~~~ 59 (320)
T PTZ00273 37 GFFYIVGHPIPQERIEKVLKMAK 59 (320)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
Confidence 33444455566666666666553
No 50
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=42.57 E-value=98 Score=29.07 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=19.5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...++..=++.+.++.+.+.++.
T Consensus 74 ~GFf~l~nHGI~~~l~~~~~~~~~~ 98 (348)
T PLN00417 74 WGVVQVMNHGITEAFLDKIYKLTKQ 98 (348)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4566677788899999999888753
No 51
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=41.72 E-value=1.3e+02 Score=28.48 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=18.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...+...=++.+.++.+.+.++.
T Consensus 67 ~GFf~v~nHGI~~~li~~~~~~~~~ 91 (358)
T PLN02515 67 WGIFQVVDHGVDANLVADMTRLARD 91 (358)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3555677777899999999887753
No 52
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=41.70 E-value=1.2e+02 Score=28.66 Aligned_cols=24 Identities=17% Similarity=-0.057 Sum_probs=17.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 84 PRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
-...++..=++.++++.+.+.++.
T Consensus 84 GFF~v~nHGi~~~l~~~~~~~~~~ 107 (361)
T PLN02758 84 GFFQVINHGIELELLEEIEKVARE 107 (361)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH
Confidence 445667777899999999887753
No 53
>PHA02985 hypothetical protein; Provisional
Probab=40.77 E-value=97 Score=28.24 Aligned_cols=82 Identities=13% Similarity=0.261 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHhhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCCCCC
Q 024600 140 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGN 219 (265)
Q Consensus 140 d~~v~~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~~~~ 219 (265)
..+.+.|++++.+-.. ..+.+++..|+.|+.|.. . ...+...+++-+.-+..||..+-..-..
T Consensus 39 ~~I~~EI~~~i~E~V~----~~n~i~i~~f~~~~~~~~-~-----------~~~~~SkilICiqsAkkGG~iIi~~~~~- 101 (271)
T PHA02985 39 KIILDEIEQYIDETVL----VKNLISIEVFNKKKKYYQ-N-----------IPSRLSKIIICIQSAKKGGCIIIINNIT- 101 (271)
T ss_pred hHHHHHHHHhcCCeEE----ecceeEEEEEcCCcceEe-e-----------CCCCceeEEEEEeecccCCEEEEecccc-
Confidence 5677888888744322 345799999998866422 1 2346788999999999999998844211
Q ss_pred CCCCCccccccccCCCCeeEecCCceEEEEecC
Q 024600 220 ISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 252 (265)
Q Consensus 220 ~~~~~~~~~~~~c~~~~l~V~Pk~G~AlvF~n~ 252 (265)
...-.++|..|.||+-.++
T Consensus 102 --------------~~K~ii~~~~n~aVlLSPL 120 (271)
T PHA02985 102 --------------NNKKIITLNINHIIILSPL 120 (271)
T ss_pred --------------cCceEEecCCCeEEEecch
Confidence 1235788999988886543
No 54
>PLN02997 flavonol synthase
Probab=40.71 E-value=69 Score=29.84 Aligned_cols=24 Identities=13% Similarity=-0.123 Sum_probs=17.1
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHc
Q 024600 83 EPRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
.-...++.+=++.+..+.+.+.++
T Consensus 57 ~GFF~v~nHGI~~~li~~~~~~~~ 80 (325)
T PLN02997 57 WGVFQVVNHGIPTELMRQLQMVGK 80 (325)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Confidence 344556666678888888888764
No 55
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=39.93 E-value=1.2e+02 Score=28.22 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHc
Q 024600 84 PRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
-..+++..=++.+.++.+.+.++
T Consensus 40 GFf~l~nHGI~~~l~~~~~~~~~ 62 (332)
T PLN03002 40 GFFYVINHGINEEFMDDVFEQSK 62 (332)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555666677777777777664
No 56
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=39.01 E-value=59 Score=31.08 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=29.6
Q ss_pred HhhccCCCCCCCcccEEEEcC-CCCCcccCccCCccccccCCCCceEEEE
Q 024600 150 IADFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFMDEFNTKNGGQRMATV 198 (265)
Q Consensus 150 i~~~~~~p~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~ 198 (265)
+..|-++|--....+.|. |. +||-|++|+|.... +-....|+|.+-+
T Consensus 107 ~~~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YDV-fliQg~G~RRW~v 154 (383)
T COG2850 107 MEPFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYDV-FLIQGQGRRRWRV 154 (383)
T ss_pred HHHhccCccccccceEEE-EecCCCccCccccchhe-eEEeecccceeec
Confidence 335556776666677777 65 69999999997542 2222335555543
No 57
>PLN02216 protein SRG1
Probab=36.38 E-value=1.1e+02 Score=28.76 Aligned_cols=24 Identities=0% Similarity=-0.229 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 84 PRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
-...++..=++.+..+.+.+.++.
T Consensus 82 GFF~v~nHGI~~~li~~~~~~~~~ 105 (357)
T PLN02216 82 GFFQLVNHGIDSSFLDKVKSEIQD 105 (357)
T ss_pred cEEEEECCCCCHHHHHHHHHHHHH
Confidence 445667777898888888887753
No 58
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=31.19 E-value=1.9e+02 Score=26.92 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=16.4
Q ss_pred EEEcCCCCHHHHHHHHHHHcC
Q 024600 87 FVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 87 ~vi~nfLs~~EC~~Li~~a~~ 107 (265)
-++.+=++.+..+.+.+.++.
T Consensus 51 qviNHGI~~~l~~~~~~~~~~ 71 (322)
T KOG0143|consen 51 QVINHGISLELLDKVKEASKE 71 (322)
T ss_pred EEEcCCCCHHHHHHHHHHHHH
Confidence 467777899999998888753
No 59
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=30.90 E-value=33 Score=30.98 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=24.1
Q ss_pred ccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCC
Q 024600 176 EPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNA 216 (265)
Q Consensus 176 ~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~ 216 (265)
.||.|..... ..-.+++|.-+.-+.+||+|.|-+.
T Consensus 95 ~wHtD~sy~~------~pp~~~~L~~~~~p~~GG~T~fad~ 129 (277)
T PRK09553 95 NWHTDVTFIE------TPPLGAILAAKQLPSTGGDTLWASG 129 (277)
T ss_pred CCeecccCee------CCCceeEEEEEecCCCCCccHhhhH
Confidence 4999986542 1123667777777779999999543
No 60
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=30.85 E-value=74 Score=26.53 Aligned_cols=7 Identities=29% Similarity=0.410 Sum_probs=3.2
Q ss_pred ccCccCC
Q 024600 176 EPHFDYF 182 (265)
Q Consensus 176 ~~H~D~~ 182 (265)
..|.|..
T Consensus 160 ~~H~~HC 166 (217)
T PF11807_consen 160 REHIDHC 166 (217)
T ss_pred cchhHHH
Confidence 3455543
No 61
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=28.70 E-value=1.1e+02 Score=21.08 Aligned_cols=21 Identities=10% Similarity=0.464 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhccccCCCCC
Q 024600 26 MFTFAILILLAFGILSMPSSS 46 (265)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~ 46 (265)
.++.++.++||++++|+....
T Consensus 30 vismimylilGi~L~yis~~~ 50 (54)
T PF04835_consen 30 VISMIMYLILGIALIYISSND 50 (54)
T ss_pred HHHHHHHHHHHHHHhhhccCc
Confidence 456777888899999986554
No 62
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=28.35 E-value=2.4e+02 Score=26.62 Aligned_cols=25 Identities=8% Similarity=-0.275 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...++..=++.+.++++.+.++.
T Consensus 82 ~GFF~l~nHGI~~~li~~~~~~~~~ 106 (362)
T PLN02393 82 WGFFQVVNHGVRPELMDRAREAWRE 106 (362)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHH
Confidence 3455566666799999888887653
No 63
>PF14851 FAM176: FAM176 family
Probab=28.05 E-value=46 Score=27.87 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCC
Q 024600 21 LTLLIMFTFAILILLAFGILSMP 43 (265)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (265)
+.+++++++++.+||.|.++.+-
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~r 44 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIR 44 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888888888777543
No 64
>PF14927 Neurensin: Neurensin
Probab=25.81 E-value=1.2e+02 Score=25.01 Aligned_cols=10 Identities=20% Similarity=0.002 Sum_probs=5.4
Q ss_pred CCCCCCCCch
Q 024600 7 SRFPTRKSSS 16 (265)
Q Consensus 7 ~~~~~~~~~~ 16 (265)
.+.++++|++
T Consensus 32 ~~~~~~~w~s 41 (140)
T PF14927_consen 32 IQPSPSRWSS 41 (140)
T ss_pred CCCCCCCCcc
Confidence 3555566554
No 65
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=25.75 E-value=1.5e+02 Score=27.21 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHc
Q 024600 83 EPRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
.-...++..=++.+.++++.+.++
T Consensus 30 ~GFf~v~nHGI~~~l~~~~~~~~~ 53 (303)
T PLN02403 30 WGFFQVENHGIDKKLMEKVKQLVN 53 (303)
T ss_pred CceEEEECCCCCHHHHHHHHHHHH
Confidence 344556666678888888887664
No 66
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=25.12 E-value=56 Score=25.60 Aligned_cols=20 Identities=30% Similarity=0.472 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhccccC
Q 024600 23 LLIMFTFAILILLAFGILSM 42 (265)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (265)
++.+++++++|+|++.|+.-
T Consensus 3 Ll~il~llLll~l~asl~~w 22 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAW 22 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666543
No 67
>PLN02704 flavonol synthase
Probab=24.84 E-value=1.2e+02 Score=28.17 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 83 EPRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
.-...+...=++.+.++++.+.++.
T Consensus 67 ~GFf~l~nHGI~~~l~~~~~~~~~~ 91 (335)
T PLN02704 67 WGMFQIVNHGIPSEVISKLQKVGKE 91 (335)
T ss_pred cCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4556677778899999999887753
No 68
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.47 E-value=2.8e+02 Score=26.01 Aligned_cols=56 Identities=20% Similarity=0.387 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccEEEEcCCCCCcccCccCCccccccCCCCceEEEEEEecccC
Q 024600 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV 205 (265)
Q Consensus 141 ~~v~~i~~Ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv 205 (265)
.+++.|.+|+-.+--+|. .-+...+..|++|+.-.||+|... ..+.+.|+. .|+|+
T Consensus 190 s~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~Pi~slS-~lSe~ 245 (323)
T KOG4176|consen 190 SLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLDPISSLS-FLSEC 245 (323)
T ss_pred hHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcCceEEEE-eecce
Confidence 456777777777766776 566799999999999999996432 234444443 46664
No 69
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=23.21 E-value=5e+02 Score=24.24 Aligned_cols=24 Identities=13% Similarity=-0.184 Sum_probs=17.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHcC
Q 024600 84 PRAFVYHNFLSKEECEYLINLATP 107 (265)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~ 107 (265)
-...++.+=++.+.++.+.+.++.
T Consensus 49 GFF~v~nHGI~~~li~~~~~~~~~ 72 (335)
T PLN02156 49 GFFKVINHGVRPDLLTQLEQEAIG 72 (335)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Confidence 455666677799999999887753
No 70
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=23.17 E-value=1.1e+02 Score=23.01 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024600 18 TLILTLLIMFTFAILILLAF 37 (265)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~ 37 (265)
-+.|++|+++.|++|+++.-
T Consensus 43 Wv~LA~FV~~lF~iL~~ms~ 62 (90)
T PF15183_consen 43 WVSLAAFVVFLFLILLYMSW 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45566677777766666643
No 71
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=21.93 E-value=3.1e+02 Score=25.76 Aligned_cols=24 Identities=0% Similarity=-0.162 Sum_probs=18.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHc
Q 024600 83 EPRAFVYHNFLSKEECEYLINLAT 106 (265)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~ 106 (265)
.-+..++..=++.+.++.+.+.++
T Consensus 78 ~GFF~l~nHGI~~~l~~~~~~~~~ 101 (360)
T PLN03178 78 WGVMHLVGHGIPADLLDRVRKAGE 101 (360)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHH
Confidence 455667777789999999988765
No 72
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=21.16 E-value=99 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=25.2
Q ss_pred CcccCccCCccccccCCCCceEEEEEEecccCCCCcceeccCC
Q 024600 174 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNA 216 (265)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eGGeT~Fp~~ 216 (265)
...+|.|...-+ ..-.+++|.-+.-..+||+|.|-+.
T Consensus 186 ~l~~HtD~~y~~------~pP~~~~L~c~~~~~~GG~T~~~d~ 222 (366)
T TIGR02409 186 GLPFHTDNPYRD------HPPGLQLLHCLESTVEGGDSLFVDG 222 (366)
T ss_pred cccccccCCccC------CCCceeeeeecccCCCCcceeeeeH
Confidence 456999975421 1123567777777789999999763
No 73
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.07 E-value=44 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=12.7
Q ss_pred EcCCCCHHHHHHHHH
Q 024600 89 YHNFLSKEECEYLIN 103 (265)
Q Consensus 89 i~nfLs~~EC~~Li~ 103 (265)
-++|+|.+|||.|..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 468999999999865
No 74
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.73 E-value=1.1e+02 Score=18.20 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=3.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHH
Q 024600 5 RYSRFPTRKSSSSTLILTLLIM 26 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (265)
+..+...++..-+||+=.+..|
T Consensus 4 ~~~~~~~~~~~GFTLiEllVa~ 25 (31)
T PF13544_consen 4 RRRRRRRRRQRGFTLIELLVAM 25 (31)
T ss_dssp --------------HHHHHHHH
T ss_pred ccccccccccCCccHHHHHHHH
Confidence 3333444445556666544433
No 75
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=20.63 E-value=1.2e+02 Score=26.12 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhhccCCCCCCCc----ccEEEEcCCC--C-----CcccCccCCccccccCCCCceEEEEEEecccCCCC
Q 024600 140 DKIIRDIEKRIADFTFFPLENGE----GLQVLHYEAG--Q-----KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEG 208 (265)
Q Consensus 140 d~~v~~i~~Ri~~~~~~p~~~~E----~lqv~rY~~G--~-----~y~~H~D~~~~~~~~~~~~~R~~T~liYLNDv~eG 208 (265)
+++++.|.....++++......+ .++-.|+... + -=..|.|+. .-++..+|--+++ +|
T Consensus 70 ~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~----------d~v~~~li~r~Ni-~G 138 (195)
T PF10014_consen 70 NPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGV----------DFVFIHLINRHNI-EG 138 (195)
T ss_dssp SHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SS----------SEEEEEEEEEESE-EE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCC----------CEEEEEEEcCCCc-cC
Confidence 46666666666666554431222 3444555532 1 124555543 4566777777666 78
Q ss_pred cceeccCC
Q 024600 209 GETVFPNA 216 (265)
Q Consensus 209 GeT~Fp~~ 216 (265)
|+|.....
T Consensus 139 G~s~i~~~ 146 (195)
T PF10014_consen 139 GESQIYDN 146 (195)
T ss_dssp --EEEEET
T ss_pred ceEEEEeC
Confidence 98888654
Done!