BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024601
(265 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255573032|ref|XP_002527446.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
gi|223533181|gb|EEF34938.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
Length = 322
Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 193/267 (72%), Positives = 215/267 (80%), Gaps = 10/267 (3%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR D+ITPGVDA GNP+DPRKIQ+HFE+FYEDLF+EL+KYGEI+SLN+CDNLADHM
Sbjct: 51 MYQRPDIITPGVDANGNPIDPRKIQQHFEEFYEDLFQELSKYGEIDSLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE A AL++LSGRFYAGRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEDAENALRNLSGRFYAGRPIIADFSPVTDFREATCRQYEENACNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHS--GHGRRYDDRDKYYE 171
MHLKRI R+LR QLFGRYRRR S S SRSRS RHRSHE+ H G GRRYDD D+Y
Sbjct: 171 MHLKRIGRELRHQLFGRYRRRRSHSHSRSRSLQRHRSHEEYYHVGRGSGRRYDDEDRYRG 230
Query: 172 SRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYK-GNT 230
SRSRR+RS SP R RSRSPG RR SPVREGSEERRA+I QWN+E+EQQ+E K NT
Sbjct: 231 SRSRRYRSISPDQSRRRSRSPGLRRNRSPVREGSEERRARIAQWNKEKEQQQETAKQVNT 290
Query: 231 DGGNNDQGINNDGLMQNGNGYHSYKQQ 257
D GNN G+ ++G QNGN H Y+QQ
Sbjct: 291 DSGNNTSGVGDNGYKQNGNKDHGYQQQ 317
>gi|13278055|gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]
Length = 310
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 187/266 (70%), Positives = 204/266 (76%), Gaps = 15/266 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG PLDPRKIQ+HFEDFYEDLFEEL+KYGEIESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPRKIQQHFEDFYEDLFEELSKYGEIESLNICDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE A AL++LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEHAGEALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHS--GHGRRYDDRDKYYE 171
MHLK+ISR+LRRQLFG R R SRSRSRSP HR H DR H G+GRR DDR++ Y
Sbjct: 171 MHLKKISRELRRQLFG--RYRRRHSRSRSRSPQAHRGHGDRPHGGRGYGRRDDDRNQRYH 228
Query: 172 SRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTD 231
+ RR RS SP H RGRSRSP GRR SPVRE SEERRAKI QWNRE+EQ A GN D
Sbjct: 229 DKGRRPRSRSPGH-RGRSRSPPGRRDRSPVRENSEERRAKIAQWNREKEQ---ADTGNND 284
Query: 232 GGNNDQGINNDGLMQNGNGYHSYKQQ 257
++ + +G NG Y+ + QQ
Sbjct: 285 VNHDVTDNHANGFQDNGEDYYDHPQQ 310
>gi|449443402|ref|XP_004139466.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
sativus]
gi|449510609|ref|XP_004163713.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
sativus]
Length = 326
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/230 (78%), Positives = 197/230 (85%), Gaps = 10/230 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DPR IQ+HFE+FYEDLF+ELNKYGEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPRNIQDHFEEFYEDLFQELNKYGEIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA AL++LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENMCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHS--GHGRRYDDRDKYYE 171
MHLKRI R+LR +LF YRRRHS SRSRSRSPYRHRS+E+RS+ GH RRYD+RD Y+E
Sbjct: 171 MHLKRIGRELRHELFAMYRRRHSHSRSRSRSPYRHRSYEERSYGKHGHSRRYDERDAYHE 230
Query: 172 SRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQ 221
SRSRRHR+TSP HR G + SPVREGSEERRAKIEQWN+EREQ
Sbjct: 231 SRSRRHRTTSPGHRSRSRSPRGRKN-RSPVREGSEERRAKIEQWNKEREQ 279
>gi|294463000|gb|ADE77038.1| unknown [Picea sitchensis]
Length = 334
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 179/293 (61%), Positives = 198/293 (67%), Gaps = 52/293 (17%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPG+D QG+ LDP+KIQEHFEDFYEDLFEEL KYGEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGMDPQGHALDPQKIQEHFEDFYEDLFEELGKYGEIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE AA AL++L+GRFYAGR IIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEHAAAALQALTGRFYAGRAIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRR--------------------RHSRSRSRSRS-------PY 146
MHLK+ISR+LRRQLFGRYRR RH R R PY
Sbjct: 171 MHLKKISRELRRQLFGRYRRYGHGYSRSRSRSLSPGLSVERHRGYDDRPRGGRGYDDRPY 230
Query: 147 RHRSHEDRSHSGHG-RRYDDRD--KYYESR-SRRHRSTSPSHRRGRSRSPGGRRYHSPVR 202
R ++DR H G G R ++RD Y++ R RR RS SP HR+GRSRS +R SPVR
Sbjct: 231 GGRGYDDRPHGGRGFGRKNERDYPGYHDDRHGRRPRSRSPGHRQGRSRSHSPKRNRSPVR 290
Query: 203 EGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLMQNGNGYHSYK 255
EGS ERRAKIEQWNREREQ + N MQNG G HSY+
Sbjct: 291 EGSAERRAKIEQWNREREQAAASSDANQS-------------MQNG-GAHSYQ 329
>gi|356543538|ref|XP_003540217.1| PREDICTED: splicing factor U2af small subunit A-like [Glycine max]
Length = 315
Score = 296 bits (759), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 179/244 (73%), Positives = 199/244 (81%), Gaps = 11/244 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDA G+P+DPRKIQ+HFE+FYEDLF+EL+KYG+IESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAHGHPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE AA A+++L+GRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEHAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRD--KYYE 171
MHLKRISR+LRRQLFG+ RHSRSRSRS RHRSHE+RSH H R+YDDRD
Sbjct: 171 MHLKRISRELRRQLFGKSHGRHSRSRSRSPY--RHRSHEERSHRSHSRKYDDRDHHHESR 228
Query: 172 SRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTD 231
SR R S R RSRSPGGRR+HSPVR+GSEERRA+IEQWNRERE QE YK N +
Sbjct: 229 SRRHRSTSPRHRRGRSRSRSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVNAE 288
Query: 232 GGNN 235
NN
Sbjct: 289 EINN 292
>gi|297818960|ref|XP_002877363.1| hypothetical protein ARALYDRAFT_323163 [Arabidopsis lyrata subsp.
lyrata]
gi|297323201|gb|EFH53622.1| hypothetical protein ARALYDRAFT_323163 [Arabidopsis lyrata subsp.
lyrata]
Length = 277
Score = 293 bits (750), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 159/232 (68%), Positives = 171/232 (73%), Gaps = 15/232 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD GN +DPRK+Q HFEDFYEDLFEELNKYGEIESLN+CDNL+DHM
Sbjct: 51 MYQRPDMITPGVDVNGNRIDPRKMQAHFEDFYEDLFEELNKYGEIESLNVCDNLSDHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA AL +L GRFYAGRPIIVDFSPVTDFREATCRQYEE TC RGGYCNF
Sbjct: 111 NVYVQFREEEQAGNALHNLQGRFYAGRPIIVDFSPVTDFREATCRQYEEETCKRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
MHLK IS LRRQL+GRY+ RH SRSRSPYRHRSH+DRSH H R D +
Sbjct: 171 MHLKSISSGLRRQLYGRYKNRH--IHSRSRSPYRHRSHDDRSHERHSRSRRYDDDDDDGE 228
Query: 174 SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEA 225
SR S R SPVR+GSEERRAKIEQWNRE+E+QE A
Sbjct: 229 SRSRSRRYRSRSPSGRRQK------SPVRDGSEERRAKIEQWNREKEEQENA 274
>gi|356572520|ref|XP_003554416.1| PREDICTED: splicing factor U2af small subunit B-like [Glycine max]
Length = 314
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 187/259 (72%), Gaps = 14/259 (5%)
Query: 1 MYQRLDM----ITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLAD 56
MYQR DM IT Q LDP K+Q+HF+DFYEDLFEEL+KYG I+SLNICDNLAD
Sbjct: 51 MYQRPDMNMNIITNPDQPQPQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLAD 110
Query: 57 HM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 109
HM FREE+ AA AL +L+GRFY+GRPIIVDFSPVTDFREATCRQYEEN CNRGG
Sbjct: 111 HMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGG 170
Query: 110 YCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKY 169
YCNFMHLK+ISRDLRR+LFGR RR + RS SRS+SP R+R+H + HSG G D D+
Sbjct: 171 YCNFMHLKKISRDLRRKLFGRNRRWNGRSGSRSKSPPRNRNHGEHLHSGRGSGRRDFDRS 230
Query: 170 YESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGN 229
+ RR RS SP +R RSRSP GR P+RE S ERRAKIEQWNRE+EQ E + K N
Sbjct: 231 HGHHGRRPRSRSPRYRGKRSRSPVGRDRSPPIRENSAERRAKIEQWNREKEQGETSNKNN 290
Query: 230 TDGGNNDQGINNDGLMQNG 248
T ++ Q + QNG
Sbjct: 291 TKSNDDYQ---EQSVAQNG 306
>gi|356505320|ref|XP_003521439.1| PREDICTED: splicing factor U2af small subunit B-like [Glycine max]
Length = 314
Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 161/260 (61%), Positives = 186/260 (71%), Gaps = 14/260 (5%)
Query: 1 MYQRLDM----ITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLAD 56
MYQR DM IT Q LDP K+Q+HF+DFYEDLFEEL+KYG I+SLNICDNLAD
Sbjct: 51 MYQRPDMNMSIITNPDQPQPQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLAD 110
Query: 57 HM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 109
HM FREE+ AA AL +L+GRFY+GRPIIVDFSPVTDFREATCRQYEEN CNRGG
Sbjct: 111 HMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGG 170
Query: 110 YCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKY 169
YCNFMHLK+ISRDLRR+LFGR RR + RS SRSRSP R+R+H + SHSG G D D+
Sbjct: 171 YCNFMHLKKISRDLRRKLFGRNRRWNGRSGSRSRSPPRNRNHGENSHSGRGSGRRDFDRS 230
Query: 170 YESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGN 229
+ RR RS SP +R RSRSP GR P+RE S ERRAKIEQWNRE+EQ + GN
Sbjct: 231 HGPHGRRPRSRSPRYRGKRSRSPVGRDRSPPIRESSAERRAKIEQWNREKEQGD---TGN 287
Query: 230 TDGGNNDQGINNDGLMQNGN 249
+ + + QNG+
Sbjct: 288 MNNSKSSDDYQEQSVAQNGS 307
>gi|116788026|gb|ABK24730.1| unknown [Picea sitchensis]
Length = 312
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/267 (64%), Positives = 189/267 (70%), Gaps = 22/267 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DM+TPG+D QG+ +DPRKIQEHFEDFYEDLFEEL KYGE+ESLN+CDNLADHM
Sbjct: 51 MYQRPDMVTPGMDIQGHAMDPRKIQEHFEDFYEDLFEELGKYGELESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA AL+SL GRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEQAANALRSLQGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MHLKRISRD-LRRQLFGRYRRRHSRSRSRSRSPY----RHRSHEDRS-HSGHGRRYDDRD 167
MHLK+ISR+ RR R HSRSRSRS SP+ +HR H+DR H G G
Sbjct: 171 MHLKKISRELRRRLFGRYRRYSHSRSRSRSASPHKDHEKHRHHDDRPRHGGRGYDRRYDV 230
Query: 168 KYYES-RSRRHRSTSP-SHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEA 225
+ R RR RS SP HRRGRSRS RR SP+REGS ERRAKIEQWNRE+E Q +
Sbjct: 231 DDRDGHRGRRTRSRSPGGHRRGRSRSHSPRRNRSPIREGSAERRAKIEQWNREKEAQASS 290
Query: 226 YKGNTDGGNNDQGINNDGLMQNGNGYH 252
N + N G N GY+
Sbjct: 291 TIAN-------HPMQNGGAYSNPQGYY 310
>gi|224286856|gb|ACN41131.1| unknown [Picea sitchensis]
Length = 312
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/267 (64%), Positives = 189/267 (70%), Gaps = 22/267 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DM+TPG+D QG+ +DPRKIQEHFEDFYEDLFEEL KYGE+ESLN+CDNLADHM
Sbjct: 51 MYQRPDMVTPGMDIQGHAMDPRKIQEHFEDFYEDLFEELGKYGELESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA AL+SL GRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEQAANALRSLQGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MHLKRISRD-LRRQLFGRYRRRHSRSRSRSRSPY----RHRSHEDRS-HSGHGRRYDDRD 167
MHLK+ISR+ RR R HSRSRSRS SP+ +HR H+DR H G G
Sbjct: 171 MHLKKISRELRRRLFGRYRRYSHSRSRSRSASPHKDYEKHRHHDDRPRHGGRGYDRRYDV 230
Query: 168 KYYES-RSRRHRSTSP-SHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEA 225
+ R RR RS SP HRRGRSRS RR SP+REGS ERRAKIEQWNRE+E Q +
Sbjct: 231 DDRDGHRGRRTRSRSPGGHRRGRSRSHSPRRNRSPIREGSAERRAKIEQWNREKEAQASS 290
Query: 226 YKGNTDGGNNDQGINNDGLMQNGNGYH 252
N + N G N GY+
Sbjct: 291 TIANYP-------MQNGGAYSNPQGYY 310
>gi|449451104|ref|XP_004143302.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
sativus]
Length = 317
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 181/274 (66%), Positives = 207/274 (75%), Gaps = 26/274 (9%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG LDPRK+Q+HFEDFYEDLFEEL+KYG++ESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA AL +L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHED-------RSHSGHGRRYDDR 166
MHLK+ISR+LRR+LFGR RRR SRSRSRS+SP++H +E+ G RR ++
Sbjct: 171 MHLKKISRELRRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEK 230
Query: 167 DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAY 226
D Y RSRR RS SP HR GRSRSPGGRR SPVRE S ERRAKIEQWNR+RE++
Sbjct: 231 DPRYHDRSRRPRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKE---- 286
Query: 227 KGNTDGGNNDQGINNDG----LMQNGNGYHSYKQ 256
D G+N Q + + G L+QN + + KQ
Sbjct: 287 ----DNGSNHQDVKDVGGSNDLVQNEDEFDPSKQ 316
>gi|449528561|ref|XP_004171272.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
sativus]
Length = 317
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 181/274 (66%), Positives = 206/274 (75%), Gaps = 26/274 (9%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG LDPRK+Q+HFEDFYEDLFEEL+KYG++ESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA AL +L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHED-------RSHSGHGRRYDDR 166
MHLK+ISR+LRR+LFGR RRR SRSRSRS+SP++H +E+ G RR ++
Sbjct: 171 MHLKKISRELRRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEK 230
Query: 167 DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAY 226
D Y RSRR RS SP HR GRSRSPGGRR SPVRE S ERRAKIEQWNR+RE+
Sbjct: 231 DPRYHDRSRRPRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKD---- 286
Query: 227 KGNTDGGNNDQGINNDG----LMQNGNGYHSYKQ 256
D G+N Q + + G L+QN + + KQ
Sbjct: 287 ----DNGSNHQDVKDVGGSNDLVQNEDEFDPSKQ 316
>gi|148908155|gb|ABR17193.1| unknown [Picea sitchensis]
Length = 344
Score = 276 bits (705), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 174/296 (58%), Positives = 191/296 (64%), Gaps = 47/296 (15%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPG+D QG+ LDPRKIQEHFEDFYEDLFEEL KYG IESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGMDPQGHALDPRKIQEHFEDFYEDLFEELGKYGAIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE AA AL++L+GRFYA R IIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEHAAAALQALTGRFYAERAIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRR-------RHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDR 166
MHLK+ISR+LRRQLFGRYRR SRS S S R+R ++DR G G YDDR
Sbjct: 171 MHLKKISRELRRQLFGRYRRYGHGYSRSRSRSLSPQLSVERNRGYDDRPRGGRG--YDDR 228
Query: 167 ------------------------------DKYYESR-SRRHRSTSPSHRRGRSRSPGGR 195
Y++ R RR RS SP HRRGRSRS +
Sbjct: 229 PHGGRGYDGGRGRGYDGRGRGFGRRNERDYPSYHDDRHGRRPRSRSPGHRRGRSRSRSPK 288
Query: 196 RYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLMQNGNGY 251
R VREGS ERRAKIEQWNREREQ + N N + L Q G G+
Sbjct: 289 RNRGSVREGSAERRAKIEQWNREREQAATSSTANESMQNGEVQNGGAHLYQPGYGF 344
>gi|242058279|ref|XP_002458285.1| hypothetical protein SORBIDRAFT_03g030670 [Sorghum bicolor]
gi|241930260|gb|EES03405.1| hypothetical protein SORBIDRAFT_03g030670 [Sorghum bicolor]
Length = 288
Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 145/238 (60%), Positives = 171/238 (71%), Gaps = 16/238 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPRK+QEHFEDFYED++EEL+K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRKMQEHFEDFYEDIYEELSKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GRPI+VDFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRPIVVDFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
MH+K+I RDLR+++FG Y+R + R RSRS SP+ R DR R +
Sbjct: 171 MHVKKIGRDLRKKMFGHYKRPY-RGRSRSPSPHHRRERRDRDDYRGAGGGGGRGRDDYRG 229
Query: 174 SR--------RHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
RH RR SP RR SPVRE SEERRAKIEQWNRER++++
Sbjct: 230 GGGGRRGGGSRHERYDDGGRRRHGGSPPPRRARSPVRESSEERRAKIEQWNRERDEKQ 287
>gi|226506342|ref|NP_001150605.1| splicing factor U2af 38 kDa subunit [Zea mays]
gi|195640524|gb|ACG39730.1| splicing factor U2af 38 kDa subunit [Zea mays]
gi|223947729|gb|ACN27948.1| unknown [Zea mays]
gi|407232662|gb|AFT82673.1| C3H4 C3H transcription factor, partial [Zea mays subsp. mays]
gi|414591925|tpg|DAA42496.1| TPA: Splicing factor U2af subunit isoform 1 [Zea mays]
gi|414591926|tpg|DAA42497.1| TPA: Splicing factor U2af subunit isoform 2 [Zea mays]
gi|414591927|tpg|DAA42498.1| TPA: Splicing factor U2af subunit isoform 3 [Zea mays]
gi|414591928|tpg|DAA42499.1| TPA: Splicing factor U2af subunit isoform 4 [Zea mays]
Length = 299
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 153/253 (60%), Positives = 174/253 (68%), Gaps = 34/253 (13%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGR--YRRRHSRSRSRSRSPYRHRSHEDRSH--------------- 156
MH+K+I RDLRR+L+GR RR H RSRSRS P R R H DR
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHGRSRSRSPPPQR-RGHRDRDDYRGGGGGGRGRGSRY 229
Query: 157 ------SGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRA 210
+G G R+D D R RH RR P RR SPVRE SEERRA
Sbjct: 230 DRYDDGAGRGGRHDRYDD-GAGRGGRHDRYDDGGRRRHGSPP--RRARSPVRESSEERRA 286
Query: 211 KIEQWNREREQQE 223
KIEQWNRERE ++
Sbjct: 287 KIEQWNREREGKQ 299
>gi|413948479|gb|AFW81128.1| splicing factor U2af subunit isoform 1 [Zea mays]
gi|413948480|gb|AFW81129.1| splicing factor U2af subunit isoform 2 [Zea mays]
gi|413948481|gb|AFW81130.1| splicing factor U2af subunit isoform 3 [Zea mays]
gi|413948482|gb|AFW81131.1| splicing factor U2af subunit isoform 4 [Zea mays]
gi|413948483|gb|AFW81132.1| splicing factor U2af subunit isoform 5 [Zea mays]
Length = 304
Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 153/266 (57%), Positives = 176/266 (66%), Gaps = 55/266 (20%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSP--------YRHR---------------- 149
MH+K+I RDLRR+L+GR R +RSRS P Y HR
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHARSRSPPPQRRGYREDYHHRDRDEYRGGGGGGGRGR 230
Query: 150 -SHEDRSHSGHGR-----RYDD------RDKYYESRSRRHRSTSPSHRRGRSRSPGGRRY 197
S DR G GR RYDD R + Y+ RR + P RRGR
Sbjct: 231 GSRHDRYDDGAGRGGRHDRYDDGAGRGGRYERYDDGGRRRHGSPP--RRGR--------- 279
Query: 198 HSPVREGSEERRAKIEQWNREREQQE 223
SPVRE SEERRAKIEQWNRERE ++
Sbjct: 280 -SPVRESSEERRAKIEQWNRERESKQ 304
>gi|226492577|ref|NP_001148499.1| splicing factor U2af 38 kDa subunit [Zea mays]
gi|195619816|gb|ACG31738.1| splicing factor U2af 38 kDa subunit [Zea mays]
Length = 305
Score = 266 bits (679), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 176/267 (65%), Gaps = 56/267 (20%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSP--------YRHR---------------- 149
MH+K+I RDLRR+L+GR R +RSRS P Y HR
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHARSRSPPPQRRGYREDYHHRDRDEYRGGGGGGGGRG 230
Query: 150 --SHEDRSHSGHGR-----RYDD------RDKYYESRSRRHRSTSPSHRRGRSRSPGGRR 196
S DR G GR RYDD R + Y+ RR + P RRGR
Sbjct: 231 RGSRHDRYDDGAGRGGRHDRYDDGAGRGGRYERYDDGGRRRHGSPP--RRGR-------- 280
Query: 197 YHSPVREGSEERRAKIEQWNREREQQE 223
SPVRE SEERRAKIEQWNRERE ++
Sbjct: 281 --SPVRESSEERRAKIEQWNRERESKQ 305
>gi|255575357|ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
gi|223531977|gb|EEF33789.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
Length = 313
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 186/263 (70%), Gaps = 18/263 (6%)
Query: 1 MYQRLDMITPGVD--AQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM 58
MYQR DM+TPGVD AQ LDPRKIQ+HFEDFY+DLFEEL+KYG+IESLNICDNLADHM
Sbjct: 51 MYQRPDMLTPGVDPQAQSQSLDPRKIQDHFEDFYQDLFEELSKYGDIESLNICDNLADHM 110
Query: 59 -------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 111
FREE+ AA AL++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYC
Sbjct: 111 VGNVYVQFREEDHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYC 170
Query: 112 NFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSP---YRHRSHEDRSHSGHGRRYDDRDK 168
NFMHLK+ISR+LRR+LFGR RRR SRSRS S S Y R H R G GRR DDR
Sbjct: 171 NFMHLKKISRELRRRLFGRNRRRRSRSRSHSPSRHRGYDERPHGGR---GFGRRDDDRAH 227
Query: 169 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKG 228
++E R + G R PVRE S ERRAKIEQWNREREQ E G
Sbjct: 228 HHERGRRPRSRSPGRRGGRSRSPAGRRNRSPPVRESSAERRAKIEQWNREREQTE---SG 284
Query: 229 NTDGGNNDQGINNDGLMQNGNGY 251
N DG N D N++G +NG Y
Sbjct: 285 NRDGQNLDNDRNSNGDAKNGGHY 307
>gi|195625888|gb|ACG34774.1| splicing factor U2af 38 kDa subunit [Zea mays]
Length = 307
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 175/270 (64%), Gaps = 60/270 (22%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGR--YRRRHSRSRSRSRSPYRHRSHEDRSHS-------------- 157
MH+K+I RDLRR+L+GR RR H RSRSRS P R + +
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHGRSRSRSPPPQRRGHRDRDDYHHRDRDDYRGGGGGG 230
Query: 158 ------------GHGR-----RYDD-------RDKYYESRSRRHRSTSPSHRRGRSRSPG 193
G GR RYDD D+Y + RRH S S
Sbjct: 231 RGRGSRYDRYDDGAGRGGRHARYDDGAGRGGRHDRYDDGGRRRHGSPS------------ 278
Query: 194 GRRYHSPVREGSEERRAKIEQWNREREQQE 223
RR SPVRE SEERRAKIEQWNRERE ++
Sbjct: 279 -RRARSPVRESSEERRAKIEQWNREREGKQ 307
>gi|242088837|ref|XP_002440251.1| hypothetical protein SORBIDRAFT_09g028530 [Sorghum bicolor]
gi|241945536|gb|EES18681.1| hypothetical protein SORBIDRAFT_09g028530 [Sorghum bicolor]
Length = 307
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 149/260 (57%), Positives = 172/260 (66%), Gaps = 40/260 (15%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGR--YRRRHSRSRSRSRSPYRHRSHEDRSH--------------- 156
MH+K+I RDLRR+L+GR RR H RSRSRS P R + +
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHGRSRSRSPPPQRRGHRDRDDYHHRDRDDYRGGGGGG 230
Query: 157 -------------SGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVRE 203
+G G R+D D R RH RR P RR SPVRE
Sbjct: 231 RGRGSRHDRYDDGAGRGGRHDRYDD-GAGRGGRHERYDDGGRRRHGSPP--RRARSPVRE 287
Query: 204 GSEERRAKIEQWNREREQQE 223
SEERRAKIEQWNRERE ++
Sbjct: 288 SSEERRAKIEQWNREREAKQ 307
>gi|224086130|ref|XP_002307825.1| predicted protein [Populus trichocarpa]
gi|222857274|gb|EEE94821.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 146/240 (60%), Positives = 165/240 (68%), Gaps = 37/240 (15%)
Query: 2 YQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM--- 58
Y R DMITPGVDAQG PLDP KIQEHFEDFYED+FEEL+K+GEIE+LN+CDNLADHM
Sbjct: 52 YHRPDMITPGVDAQGQPLDPHKIQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGN 111
Query: 59 ----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFM 114
F+EE+QAA AL+SL GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFM
Sbjct: 112 VYVQFKEEDQAAAALQSLQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFM 171
Query: 115 HLKRISRDLRRQLFGRYR-----------RRHSRSRSRSRSPYRHRSHEDRSHSGHGRRY 163
H+K I +DLRR+LFGRYR R R DR + G+GRR
Sbjct: 172 HVKLIGKDLRRKLFGRYRGYRVSRSRSRSVSPRRRDRDYDRRERDYRDRDRDYRGNGRR- 230
Query: 164 DDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
+DRD GR R RR SPVREGSEERRA+IEQWNRERE+++
Sbjct: 231 NDRDG------------------GRKRHGSPRRSRSPVREGSEERRARIEQWNREREEKQ 272
>gi|351629504|gb|AEQ54731.1| SiU2af35 [Setaria italica]
Length = 294
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 144/244 (59%), Positives = 167/244 (68%), Gaps = 21/244 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGR--YRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYE 171
MH+K+I +DLRR+L+GR R+ H RSRSRS P R + + Y
Sbjct: 171 MHVKQIGKDLRRKLYGRSASRKYHGRSRSRSPPPQRRGHRDRDDYHRDRDDYRGGGGGGR 230
Query: 172 SRSRRHRSTSPSHR------------RGRSRSPGGRRYHSPVREGSEERRAKIEQWNRER 219
R RH R R SP RR SPVRE SEERRAKIEQWNRER
Sbjct: 231 GRGSRHDRYDDGGGRGGRHDRYDDGGRRRHGSPPPRRGRSPVRESSEERRAKIEQWNRER 290
Query: 220 EQQE 223
E ++
Sbjct: 291 EAKQ 294
>gi|212275838|ref|NP_001130754.1| splicing factor U2af subunit isoform 1 [Zea mays]
gi|194690026|gb|ACF79097.1| unknown [Zea mays]
gi|194703336|gb|ACF85752.1| unknown [Zea mays]
gi|407232734|gb|AFT82709.1| C3H53 C3H type transcription factor, partial [Zea mays subsp. mays]
gi|413946518|gb|AFW79167.1| splicing factor U2af subunit isoform 1 [Zea mays]
gi|413946519|gb|AFW79168.1| splicing factor U2af subunit isoform 2 [Zea mays]
gi|413946520|gb|AFW79169.1| splicing factor U2af subunit isoform 3 [Zea mays]
Length = 307
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/270 (55%), Positives = 171/270 (63%), Gaps = 60/270 (22%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGR--YRRRHSRSRSRSRSPYR------------------HRSHED 153
MH+K+I RDLRR+L+GR RR H RSRSRS P R
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHGRSRSRSPPPQRRGHRDRDDYHHRDRDDYRGGGGGG 230
Query: 154 RSHSGHGRRYDDR--------------------DKYYESRSRRHRSTSPSHRRGRSRSPG 193
R RYDD D+Y + RRH S S
Sbjct: 231 RGRGSRYDRYDDGAGRGGRHGRYDDGAGRGGRHDRYDDGGRRRHGSPS------------ 278
Query: 194 GRRYHSPVREGSEERRAKIEQWNREREQQE 223
RR SPVRE SEERRAKIEQWNRERE ++
Sbjct: 279 -RRARSPVRESSEERRAKIEQWNREREGKQ 307
>gi|195615822|gb|ACG29741.1| splicing factor U2af 38 kDa subunit [Zea mays]
Length = 307
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/270 (55%), Positives = 172/270 (63%), Gaps = 60/270 (22%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGR--YRRRHSRSRSRSRSPYRHRSH-------------------- 151
MH+K+I RDLRR+L+GR RR H RSRSRS P R
Sbjct: 171 MHVKQIGRDLRRKLYGRSASRRYHGRSRSRSPPPQRRDHRDRDDYHHRDRDDYRGGGGGG 230
Query: 152 -----------EDRSHSGHGRRYDD-------RDKYYESRSRRHRSTSPSHRRGRSRSPG 193
+ G RYDD D+Y + RRH S S
Sbjct: 231 RGRGSRYDRYDDGAGRGGRHGRYDDGAGRGGRHDRYDDGGRRRHGSPS------------ 278
Query: 194 GRRYHSPVREGSEERRAKIEQWNREREQQE 223
RR SPVRE SEERRAKIEQWNRERE ++
Sbjct: 279 -RRARSPVRESSEERRAKIEQWNREREGKQ 307
>gi|297727107|ref|NP_001175917.1| Os09g0491756 [Oryza sativa Japonica Group]
gi|75338870|sp|Q9ZQW8.1|U2AFA_ORYSJ RecName: Full=Splicing factor U2af small subunit A; AltName:
Full=U2 auxiliary factor 35 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit A; Short=U2 snRNP auxiliary factor small
subunit A; AltName: Full=Zinc finger CCCH
domain-containing protein 60; Short=OsC3H60
gi|3850818|emb|CAA77133.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa]
gi|125564203|gb|EAZ09583.1| hypothetical protein OsI_31864 [Oryza sativa Indica Group]
gi|125606167|gb|EAZ45203.1| hypothetical protein OsJ_29848 [Oryza sativa Japonica Group]
gi|215692945|dbj|BAG88365.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704518|dbj|BAG94151.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679017|dbj|BAH94645.1| Os09g0491756 [Oryza sativa Japonica Group]
Length = 290
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/239 (61%), Positives = 171/239 (71%), Gaps = 16/239 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MY R DMITPG+DAQGNP+DP KIQ FEDFYED+FEEL+KYGEIESL++CDN ADHM
Sbjct: 51 MYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGR------RYD 164
MH+K I RDLR++LFG R RR HS RSRS SPY +R DR S R R
Sbjct: 171 MHVKEIGRDLRKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGG 230
Query: 165 DRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
D Y R S+ SR R SPVR+GSEERRA+IEQWNRERE +
Sbjct: 231 SHDYYRGGSRRSSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNREREAAQ 289
>gi|388521171|gb|AFK48647.1| unknown [Medicago truncatula]
Length = 327
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/236 (64%), Positives = 177/236 (75%), Gaps = 20/236 (8%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
LDP K+QEHF+DFYEDLFEEL+KYG+I+SLNICDNLADHM ++EE+ AA AL +
Sbjct: 83 LDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMN 142
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
L+GRFY+GRPIIV FSPVTDFREATCRQYEEN CNRGGYCNFMHLK+ISRDLR++LFGR
Sbjct: 143 LTGRFYSGRPIIVGFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRS 202
Query: 132 RRR-HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSR 190
RR + RS SRSRSP R+R++E RS+SG G D D+ + S RR RS SP HR RSR
Sbjct: 203 SRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGSHGRRPRSRSPRHRGRRSR 262
Query: 191 SPGGR-RYHSPV---REGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINND 242
SP GR R +PV RE S ERRA+IEQWNRE+E D GN D NND
Sbjct: 263 SPVGRDRSPNPVRGERESSVERRARIEQWNREKEV--------GDSGNKDNKSNND 310
>gi|3850819|emb|CAA77134.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length = 274
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/233 (60%), Positives = 166/233 (71%), Gaps = 20/233 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MY R DMITPG+DAQGNP+DP KIQ FEDFYED+FEEL+KYGEIESL++CDN ADHM
Sbjct: 51 MYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYY 170
MH+K I RDLR++LFG R RR HS RSRS SPY H R + Y
Sbjct: 171 MHVKEIGRDLRKRLFGHLHRSRRSHSHGRSRSPSPY----HYRRDYDRRSSSRSRDHDDY 226
Query: 171 ESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
+R S + RG SR R S +GSEERRA+IEQWNRERE +
Sbjct: 227 ------YRGGSHDYYRGGSRRSSERHRSSYDSDGSEERRAQIEQWNREREAAQ 273
>gi|255539352|ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
Length = 272
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/240 (61%), Positives = 165/240 (68%), Gaps = 37/240 (15%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPRKIQEHFEDFYED+FEEL K+GEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQ+EEN CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRS-----------HSGHGRR 162
MH+K I RDLRR+LFGRYR + E + + G+GRR
Sbjct: 171 MHVKLIGRDLRRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRR 230
Query: 163 YDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQ 222
DR H R R SP RR SPVREGSEERRA+IEQWNRERE++
Sbjct: 231 SGDR-----------------HDRRRHGSP--RRSRSPVREGSEERRARIEQWNREREEK 271
>gi|226502062|ref|NP_001140674.1| uncharacterized protein LOC100272749 [Zea mays]
gi|194700362|gb|ACF84265.1| unknown [Zea mays]
gi|194700522|gb|ACF84345.1| unknown [Zea mays]
gi|223975941|gb|ACN32158.1| unknown [Zea mays]
gi|407232750|gb|AFT82717.1| C3H40 C3H type transcription factor, partial [Zea mays subsp. mays]
gi|414886043|tpg|DAA62057.1| TPA: splicing factor U2af subunit isoform 1 [Zea mays]
gi|414886044|tpg|DAA62058.1| TPA: splicing factor U2af subunit isoform 2 [Zea mays]
gi|414886045|tpg|DAA62059.1| TPA: splicing factor U2af subunit isoform 3 [Zea mays]
gi|414886046|tpg|DAA62060.1| TPA: splicing factor U2af subunit isoform 4 [Zea mays]
gi|414886047|tpg|DAA62061.1| TPA: splicing factor U2af subunit isoform 5 [Zea mays]
gi|414886048|tpg|DAA62062.1| TPA: splicing factor U2af subunit isoform 6 [Zea mays]
gi|414886049|tpg|DAA62063.1| TPA: splicing factor U2af subunit isoform 7 [Zea mays]
gi|414886050|tpg|DAA62064.1| TPA: splicing factor U2af subunit isoform 8 [Zea mays]
Length = 287
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/237 (61%), Positives = 167/237 (70%), Gaps = 15/237 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DP +IQE FEDFYED+F EL+K+GEIESL++CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPERIQEDFEDFYEDIFVELSKHGEIESLHVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAARAL++L GR+Y+GRPII +FSPVTDFREATCRQ+EE++CNRGGYCNF
Sbjct: 111 NVYVEFREEEQAARALQALQGRYYSGRPIIAEFSPVTDFREATCRQFEEHSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPY----RHRSHEDRSHSGHGRRYDDR 166
MH+K++ RDLRR+LFG R R HSR SRS SPY DR + R
Sbjct: 171 MHVKQVGRDLRRKLFGHLHRSLRSHSRG-SRSPSPYRRRGSSSRSRDRDDYHDYYYHYYR 229
Query: 167 DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
RS + S R R R SPVREGSEERRAKIEQWNRERE +
Sbjct: 230 SGSGSRRSSERHRSHDSDGSRRRRGRSRSRSRSPVREGSEERRAKIEQWNREREAAQ 286
>gi|357135864|ref|XP_003569528.1| PREDICTED: splicing factor U2af small subunit B-like isoform 1
[Brachypodium distachyon]
gi|357135866|ref|XP_003569529.1| PREDICTED: splicing factor U2af small subunit B-like isoform 2
[Brachypodium distachyon]
gi|357135868|ref|XP_003569530.1| PREDICTED: splicing factor U2af small subunit B-like isoform 3
[Brachypodium distachyon]
Length = 281
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/232 (62%), Positives = 167/232 (71%), Gaps = 11/232 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPRK+QEHFEDFYED+FEEL+K+GEIE+LN+CDNL+DHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRKMQEHFEDFYEDIFEELSKFGEIETLNVCDNLSDHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GR IIVDFSPVTDFREATCRQYEENTC RGG+CNF
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRLIIVDFSPVTDFREATCRQYEENTCTRGGHCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
MH+K+I +DLR++LFGR RR R RSRS SP+ R DR Y
Sbjct: 171 MHVKQIGKDLRKKLFGR-YRRSHRGRSRSPSPHHRRERRDRDDYRGRDDYRRGGGGGGGG 229
Query: 174 SRRHRSTSPSHRRGRSRSPGG---RRYHSPVREGSEERRAKIEQWNREREQQ 222
R S + H G R GG RR SPVRE SEERRAKIEQWNRE+E +
Sbjct: 230 RRGGSSRNERHDDGGRRRYGGSPPRRARSPVRENSEERRAKIEQWNREKEAK 281
>gi|326498815|dbj|BAK02393.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 281
Score = 249 bits (636), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 147/232 (63%), Positives = 167/232 (71%), Gaps = 11/232 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPRK+QEHFEDFYED+FEEL+K+GEIE+LN+CDNL+DHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRKMQEHFEDFYEDIFEELSKFGEIETLNVCDNLSDHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GR IIVDFSPVTDFREATCRQYEENTC RGG+CNF
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRLIIVDFSPVTDFREATCRQYEENTCTRGGHCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
MH+K+I +DLR++LFGRYRR R RSRS SP+ R DR +
Sbjct: 171 MHVKQIGKDLRKKLFGRYRRS-QRGRSRSPSPHHRRERRDRDDYRGRDDFRRGGGGGGGG 229
Query: 174 SRRHRSTSPSHRRGRSRSPGG---RRYHSPVREGSEERRAKIEQWNREREQQ 222
R S H G R GG RR SPVRE SEERRAKIEQWNRERE +
Sbjct: 230 RRGGSSRHERHDDGGRRRYGGSPPRRARSPVRENSEERRAKIEQWNRERETK 281
>gi|224061819|ref|XP_002300614.1| predicted protein [Populus trichocarpa]
gi|222842340|gb|EEE79887.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/245 (59%), Positives = 166/245 (67%), Gaps = 44/245 (17%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDP KIQEHFE+FYED+FEELNK+GEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPHKIQEHFEEFYEDIFEELNKFGEIESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQ+EEN CNRGGYCNF
Sbjct: 111 NVYVLFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYR---------------RRHSRSRSRSRSPYRHRSHEDRSHSG 158
MH+K I RDLRR+LFGRYR +R R R DR + G
Sbjct: 171 MHVKLIGRDLRRKLFGRYRGYRVSRSRSRSVSPRKRERDYDRRERDYRDRDRDRDRDYRG 230
Query: 159 HGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNRE 218
+GRR D D R G +R+ S VREGSEERRA+IEQWNRE
Sbjct: 231 NGRRNDKYD----------------------REGGRKRHGSTVREGSEERRARIEQWNRE 268
Query: 219 REQQE 223
RE+++
Sbjct: 269 REEKQ 273
>gi|195622372|gb|ACG33016.1| splicing factor U2af 38 kDa subunit [Zea mays]
gi|195639644|gb|ACG39290.1| splicing factor U2af 38 kDa subunit [Zea mays]
Length = 284
Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/234 (61%), Positives = 167/234 (71%), Gaps = 12/234 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DP +IQE FEDFYED+F EL+K+GEIESL++CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPERIQEDFEDFYEDIFVELSKHGEIESLHVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAARAL++L GR+Y+GRPII +FSPVTDFREATCRQ+EE++CNRGGYCNF
Sbjct: 111 NVYVEFREEEQAARALQALQGRYYSGRPIIAEFSPVTDFREATCRQFEEHSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSR-SRSP---YRHRSHEDRSHSGHGRRYDDRDKY 169
MH+K++ RDLRR+LFG + R RS SR SRSP R S Y+ R
Sbjct: 171 MHVKQVGRDLRRKLFG-HLHRSLRSHSRGSRSPSPYRRRGSSSRSRDRDDYYYYNYRSGS 229
Query: 170 YESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
RS + S R R R SPVREGSEERRAKIEQWNRERE +
Sbjct: 230 GSRRSSERHRSHDSDGSRRRRGRSRSRSRSPVREGSEERRAKIEQWNREREAAQ 283
>gi|359482307|ref|XP_002277445.2| PREDICTED: splicing factor U2af small subunit B-like [Vitis
vinifera]
Length = 343
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 116/136 (85%), Positives = 123/136 (90%), Gaps = 7/136 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DM+TPGVD QG PLDPRKIQEHFEDFYEDLFEEL+KYGEIESLNICDNLADHM
Sbjct: 51 MYQRPDMVTPGVDPQGQPLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE AA AL++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFG 129
MHLK+ISR+LRRQLFG
Sbjct: 171 MHLKKISRELRRQLFG 186
>gi|294461365|gb|ADE76244.1| unknown [Picea sitchensis]
Length = 290
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/241 (60%), Positives = 170/241 (70%), Gaps = 31/241 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPG+D QG +DPRKIQEHFEDF+ED+FEEL+K+GEIE+LNICDNLADHM
Sbjct: 51 MYQRPDMITPGLDPQGQAMDPRKIQEHFEDFFEDIFEELSKFGEIENLNICDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAA ALK++ GRFY+GRPIIVDFSPVTDFREATCRQ+EEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAAAALKAMQGRFYSGRPIIVDFSPVTDFREATCRQFEENNCNRGGYCNF 170
Query: 114 MHLKRISRDL---------RRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD 164
MH+K+I++DL R + R S S P R R ++DR G+GRRY+
Sbjct: 171 MHVKKINKDLRRKLFGRFRRFRGGRSRSRSRSLSPLPPPPPSRSRRYDDR---GNGRRYE 227
Query: 165 DRDKYYESRSRRHRSTSPSHRRGRSR---SPGGRRYHSPVREGSEERRAKIEQWNREREQ 221
DRD +RS+ RRG + S RR SP R+GS ERRA+IEQWNRERE
Sbjct: 228 DRD---------YRSSDRDERRGSVKRTRSRSPRRNRSPARDGSAERRARIEQWNRERES 278
Query: 222 Q 222
Q
Sbjct: 279 Q 279
>gi|15239067|ref|NP_199096.1| Splicing factor U2af small subunit B [Arabidopsis thaliana]
gi|42573547|ref|NP_974870.1| Splicing factor U2af small subunit B [Arabidopsis thaliana]
gi|75334092|sp|Q9FMY5.1|U2AFB_ARATH RecName: Full=Splicing factor U2af small subunit B; AltName:
Full=U2 auxiliary factor 35 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit B; Short=U2 snRNP auxiliary factor small
subunit B; AltName: Full=Zinc finger CCCH
domain-containing protein 60; Short=AtC3H60
gi|10177285|dbj|BAB10638.1| U2 snRNP auxiliary factor, small subunit [Arabidopsis thaliana]
gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana]
gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor small subunit [Arabidopsis thaliana]
gi|332007485|gb|AED94868.1| Splicing factor U2af small subunit B [Arabidopsis thaliana]
gi|332007486|gb|AED94869.1| Splicing factor U2af small subunit B [Arabidopsis thaliana]
Length = 283
Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 150/246 (60%), Positives = 174/246 (70%), Gaps = 40/246 (16%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSR-----------------SRSRSRSPYRHRSHEDRSH 156
MH+K+ISR+LRR+LFGRYRR + R SR R R R DR
Sbjct: 171 MHVKQISRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVR-----DRDR 225
Query: 157 SGHGRRYDDR-DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQW 215
G+G+R DR +++ R R SP RSRSP VREGSEERRA+IEQW
Sbjct: 226 HGNGKRSSDRSERHDRDGGGRRRHGSPK----RSRSPRN------VREGSEERRARIEQW 275
Query: 216 NREREQ 221
NRER++
Sbjct: 276 NRERDE 281
>gi|297791697|ref|XP_002863733.1| hypothetical protein ARALYDRAFT_494737 [Arabidopsis lyrata subsp.
lyrata]
gi|297309568|gb|EFH39992.1| hypothetical protein ARALYDRAFT_494737 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/245 (61%), Positives = 173/245 (70%), Gaps = 40/245 (16%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSR-----------------SRSRSRSPYRHRSHEDRSH 156
MH+K+ISR+LRR+LFGRYRR + R SR R R R DR
Sbjct: 171 MHVKQISRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDLR-----DRDR 225
Query: 157 SGHGRRYDDR-DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQW 215
G+G+R DR +++ R R SP RSRSP VREGSEERRA+IEQW
Sbjct: 226 HGNGKRSSDRSERHDRDGGGRRRHGSPK----RSRSPRN------VREGSEERRARIEQW 275
Query: 216 NRERE 220
NRER+
Sbjct: 276 NRERD 280
>gi|68036691|gb|AAY84879.1| U2AF small subunit [Triticum aestivum]
Length = 314
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/241 (57%), Positives = 166/241 (68%), Gaps = 24/241 (9%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DP KIQ FEDFYED+F+EL+K+GE+E+L++CDNLADH+
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPVKIQGDFEDFYEDIFDELSKHGEVENLHVCDNLADHLIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA+AL++L GRFY+GRPII +FSPVTDFREATCRQ+EE+ CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAKALQALQGRFYSGRPIIAEFSPVTDFREATCRQFEEHNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRS------------HSGHGR 161
MH+K I RDLR++L+G R SRSP +R H + G
Sbjct: 171 MHVKEIGRDLRKRLYGHLHRSGRSHSRSSRSPSPYRHHARDRDRSSRSRDRGDYYGGSLD 230
Query: 162 RYDDRDKYYESR--SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNRER 219
R D D Y+ SR S R+R+ G R SPVREGSEERRAKIEQWNRER
Sbjct: 231 RGDYGDYYHHSRRSSERNRNYDSD---GSRCRRHRSRTRSPVREGSEERRAKIEQWNRER 287
Query: 220 E 220
E
Sbjct: 288 E 288
>gi|326528149|dbj|BAJ89126.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 314
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/241 (58%), Positives = 170/241 (70%), Gaps = 24/241 (9%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP++P KIQ FEDFYED+F+EL+K+GE+E+L++CDNLADH+
Sbjct: 51 MYQRPDMITPGVDAQGNPINPVKIQGDFEDFYEDIFDELSKHGEVENLHVCDNLADHLIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA+AL++L GRFY+GRPII +FSPVTDFREATCRQ+EE+ CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAKALQALQGRFYSGRPIIAEFSPVTDFREATCRQFEEHNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHE---DRS---------HSGHGR 161
MH+K+I RDLR++L+G SRSP +R H DRS + G
Sbjct: 171 MHVKQIGRDLRKRLYGHLHSSRRSHSRSSRSPSPYRHHARDRDRSSRSKDRGDYYGGSLD 230
Query: 162 RYDDRDKYYESR--SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNRER 219
R D D Y+ SR S R+R+ G R R SPVREGSEERRAKIEQWNRER
Sbjct: 231 RGDYGDYYHHSRRSSERNRNYDSD---GSRRRRHRSRTRSPVREGSEERRAKIEQWNRER 287
Query: 220 E 220
+
Sbjct: 288 D 288
>gi|356574563|ref|XP_003555415.1| PREDICTED: splicing factor U2af small subunit A-like [Glycine max]
Length = 268
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/230 (60%), Positives = 155/230 (67%), Gaps = 19/230 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG LDPRKIQ+HFEDFYED+F EL K+GEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQTLDPRKIQQHFEDFYEDIFTELAKFGEIESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA+AL +L GRFY RPII DFSPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAKALHALRGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
MH+K I RDLRR+LFGR R S HR RS S R++
Sbjct: 171 MHVKLIGRDLRRRLFGR--------NHRGGSGTYHRVSRSRSRSRSASPRYRRERRESDS 222
Query: 174 SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
RS GR R G P REGSEERRA+IEQWNRERE+ +
Sbjct: 223 RGGRRSRERDGSGGRRRQHGS----PPAREGSEERRARIEQWNREREENK 268
>gi|15723293|gb|AAL06332.1|AF409140_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 283
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/246 (60%), Positives = 172/246 (69%), Gaps = 40/246 (16%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLN+C NLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCVNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGG CNF
Sbjct: 111 NVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGCCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSR-----------------SRSRSRSPYRHRSHEDRSH 156
MH+K+ISR+LRR+LFGRYRR + R SR R R R DR
Sbjct: 171 MHVKQISRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVR-----DRDR 225
Query: 157 SGHGRRYDDR-DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQW 215
G+G+R DR ++Y R R SP RSRSP VREGSEERRA+IEQW
Sbjct: 226 HGNGKRSSDRSERYDRDGGGRRRHGSPK----RSRSPRN------VREGSEERRARIEQW 275
Query: 216 NREREQ 221
NRER++
Sbjct: 276 NRERDE 281
>gi|449455651|ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
sativus]
gi|449485076|ref|XP_004157064.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
sativus]
Length = 276
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/230 (61%), Positives = 161/230 (70%), Gaps = 11/230 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPRKIQEHFEDFYED++EEL K+GEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
MH+K I +DLRR+LFGRYR + + H R Y DRD R
Sbjct: 171 MHVKMIGKDLRRKLFGRYRGYRASRSRSRSL----SPRNRKEHDRRERDYRDRDYRGNGR 226
Query: 174 SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
S+ RR S R VREGSEERRA+IEQWNRERE+++
Sbjct: 227 SKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ 276
>gi|312282783|dbj|BAJ34257.1| unnamed protein product [Thellungiella halophila]
Length = 308
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/254 (59%), Positives = 171/254 (67%), Gaps = 31/254 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSR---SPYRHRSHEDRSHSGHGRRYDDRDKYY 170
MH+K +SR+LRR+LFGRYRR + R SP R H+ R S + DRD+ +
Sbjct: 171 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSISPRHKREHDRRDPSHREFSHRDRDREF 230
Query: 171 ESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGS---------------------EERR 209
RS+ S R R S G R REGS EERR
Sbjct: 231 YRHGSGKRSSERSERGDREGSRGDREGSRGDREGSRRRHESSPKRGGSPGGGREGSEERR 290
Query: 210 AKIEQWNREREQQE 223
A+IEQWNRERE++E
Sbjct: 291 ARIEQWNREREEKE 304
>gi|225457677|ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
vinifera]
gi|359491881|ref|XP_003634337.1| PREDICTED: splicing factor U2af small subunit B isoform 2 [Vitis
vinifera]
Length = 272
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/237 (62%), Positives = 167/237 (70%), Gaps = 29/237 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPRKIQEHFEDFYED+FEEL K+GEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EEEQAA AL++L GRFY+GRPII DFSPVTDFREATCRQ+EEN CNRGGYCNF
Sbjct: 111 NVYVQFKEEEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF-------GRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDR 166
MH+K I RDLRR+LF R S S R R RS + + G+GRR D+
Sbjct: 171 MHVKLIGRDLRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDRRRSGDRGDYRGNGRRSGDK 230
Query: 167 DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
+ S R R SP RR SPVREGSEERRA+IE WNRERE+++
Sbjct: 231 ---HGSDGGRRRHGSP------------RRSRSPVREGSEERRARIELWNREREERQ 272
>gi|357154143|ref|XP_003576685.1| PREDICTED: splicing factor U2af small subunit A-like [Brachypodium
distachyon]
Length = 295
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/244 (55%), Positives = 162/244 (66%), Gaps = 21/244 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DP KIQ FEDFYED+F+EL+K+G +ESL++CDNLADH+
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPVKIQGDFEDFYEDIFDELSKHGVVESLHVCDNLADHLIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAARAL++L GRFY+GRPII +FSPVTDFREATCRQ+EE+ CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAARALQALQGRFYSGRPIIAEFSPVTDFREATCRQFEEHNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRY----------RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRY 163
MH+K I RDLR++L+G + R RS ++R +G
Sbjct: 171 MHVKEIGRDLRKRLYGHLHRSRRSHSRSPSPYHRHPRDRDRRSSSRSRDNRGGDYYGGSL 230
Query: 164 D--DRDKYYESRSRRHRSTSPSHRR--GRSRSPGGRRYHSPVREGSEERRAKIEQWNRER 219
D D YY RR ++ G R R SPVREGSEERRAKIEQWNRER
Sbjct: 231 DRGDYGDYYHHSRRRSSERHRNYDSDDGSRRRRHRSRTRSPVREGSEERRAKIEQWNRER 290
Query: 220 EQQE 223
E +
Sbjct: 291 EAAQ 294
>gi|224034457|gb|ACN36304.1| unknown [Zea mays]
Length = 276
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/227 (61%), Positives = 159/227 (70%), Gaps = 15/227 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DP +IQE FEDFYED+F EL+K+GEIESL++CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPERIQEDFEDFYEDIFVELSKHGEIESLHVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQAARAL++L GR+Y+GRPII +FSPVTDFREATCRQ+EE++CNRGGYCNF
Sbjct: 111 NVYVEFREEEQAARALQALQGRYYSGRPIIAEFSPVTDFREATCRQFEEHSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYY 170
MH+K++ RDLRR+LFG R R HSR SRS SPYR R RS Y
Sbjct: 171 MHVKQVGRDLRRKLFGHLHRSLRSHSRG-SRSPSPYRRRGSSSRSRDRDDYHDYYYHYYR 229
Query: 171 ESRSRRHRSTSP----SHRRGRSRSPGGRRYHSPVREGSEERRAKIE 213
R S S R R R SPVREGSEERRAKIE
Sbjct: 230 SGSGSRRSSERHRSHDSDGSLRRRGRSRSRSRSPVREGSEERRAKIE 276
>gi|168049329|ref|XP_001777116.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671559|gb|EDQ58109.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 304
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/248 (60%), Positives = 164/248 (66%), Gaps = 36/248 (14%)
Query: 1 MYQRLDM-ITPGVDAQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH 57
MYQ D GVD GN DPRK+QEHFEDFYED+FEEL+KYGEIE+LN+CDNLADH
Sbjct: 51 MYQSPDAGFHGGVDQHGNIQQSDPRKLQEHFEDFYEDIFEELSKYGEIENLNVCDNLADH 110
Query: 58 M-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 110
M FREEE AA AL +LSGRFYAGRPII+DFSPVTDFREATCRQYEENTCNRGGY
Sbjct: 111 MIGNVYVKFREEEHAAAALNALSGRFYAGRPIILDFSPVTDFREATCRQYEENTCNRGGY 170
Query: 111 CNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRD--- 167
CNFMHLK+ISR+LRR+LFG YR RSRSRS SPY + RRY DRD
Sbjct: 171 CNFMHLKKISRELRRKLFGNYR---RRSRSRSHSPY---GRGEARGPPSPRRYGDRDFYD 224
Query: 168 ----------KYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNR 217
S RR + R RSPG REGS ERRAKIEQWNR
Sbjct: 225 SRRGGGRGGGGRGRSYGRRRDRSRSRTPPRRGRSPG-------AREGSAERRAKIEQWNR 277
Query: 218 EREQQEEA 225
ERE ++ A
Sbjct: 278 EREVRQAA 285
>gi|388506242|gb|AFK41187.1| unknown [Lotus japonicus]
Length = 318
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/241 (60%), Positives = 175/241 (72%), Gaps = 22/241 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
K+Q+HF+DFYEDLF+EL+KYG+I+SLNICDNLADHM ++EE+ AA AL +L+GR
Sbjct: 79 KLQDHFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALTNLTGR 138
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH 135
FY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+ISRDLRR+LFGR +R +
Sbjct: 139 FYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRRLFGRNKRWN 198
Query: 136 ----SRSRSRSRSPYRHRSHEDRSH--SGHGRRYDDRDKYYESRSRRHRSTSPSHRRG-R 188
SRSRSRSRSP R+R++E+R G D D+ + R+ RS SP RG R
Sbjct: 199 DRRGSRSRSRSRSPPRNRNYEERPQFGGRGGSGRRDFDRSHGRHGRKPRSRSPPRFRGKR 258
Query: 189 SRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLMQNG 248
SRSP GR SPVRE S ERRAKIEQWN E+EQ + K NT + D L QNG
Sbjct: 259 SRSPAGRD-RSPVRESSAERRAKIEQWNGEKEQDDTGPKNNTSD-------DYDELAQNG 310
Query: 249 N 249
+
Sbjct: 311 S 311
>gi|145324040|ref|NP_001077609.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
gi|332192738|gb|AEE30859.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
Length = 246
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 148/236 (62%), Positives = 168/236 (71%), Gaps = 21/236 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM
Sbjct: 1 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 61 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSR-----SPYRHRSHEDRSHSGHGRRYDDRDK 168
MH+K +SR+LRR+LFGRYRR + R SP R ++ R S + DRD+
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180
Query: 169 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP--------VREGSEERRAKIEQWN 216
+ RS+ S R+ R S GRR SP REGSEERRA+IEQWN
Sbjct: 181 EFYRHGSGKRSSERSERQERDGS-RGRRQASPKRGGSPGGGREGSEERRARIEQWN 235
>gi|297845720|ref|XP_002890741.1| hypothetical protein ARALYDRAFT_472969 [Arabidopsis lyrata subsp.
lyrata]
gi|297336583|gb|EFH67000.1| hypothetical protein ARALYDRAFT_472969 [Arabidopsis lyrata subsp.
lyrata]
Length = 296
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 147/244 (60%), Positives = 164/244 (67%), Gaps = 37/244 (15%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRR-----------------RHSRSRSRSRSPYRHRSHEDRSH 156
MH+K +SR+LRR+LFGRYRR R+ R R P+R SH DR
Sbjct: 171 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKREYDRRDPPHREFSHRDRDR 230
Query: 157 S----GHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKI 212
G G+R +R + E R R R SP REGSEERRA+I
Sbjct: 231 EFYRHGSGKRSSERSERQERDGSRGR---------RQASPKRGGSPGGGREGSEERRARI 281
Query: 213 EQWN 216
EQWN
Sbjct: 282 EQWN 285
>gi|15217666|ref|NP_174086.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName: Full=Splicing factor U2af small subunit A; AltName:
Full=U2 auxiliary factor 35 kDa subunit A; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit A; Short=U2 snRNP auxiliary factor small
subunit A; AltName: Full=Zinc finger CCCH
domain-containing protein 8; Short=AtC3H8
gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity to gb|Y18349 U2 snRNP auxiliary factor, small
subunit from Oryza sativa. ESTs gb|AA586295 and
gb|AA597332 come from this gene [Arabidopsis thaliana]
gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10 [Arabidopsis thaliana]
gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
gi|19699275|gb|AAL91249.1| At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary factor protein [Arabidopsis thaliana]
gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]
gi|21689611|gb|AAM67427.1| At1g27650/T22C5_2 [Arabidopsis thaliana]
gi|332192737|gb|AEE30858.1| splicing factor U2af small subunit A [Arabidopsis thaliana]
Length = 296
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/236 (62%), Positives = 168/236 (71%), Gaps = 21/236 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSR-----SPYRHRSHEDRSHSGHGRRYDDRDK 168
MH+K +SR+LRR+LFGRYRR + R SP R ++ R S + DRD+
Sbjct: 171 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 230
Query: 169 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP--------VREGSEERRAKIEQWN 216
+ RS+ S R+ R S GRR SP REGSEERRA+IEQWN
Sbjct: 231 EFYRHGSGKRSSERSERQERDGS-RGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>gi|99014572|emb|CAK22276.1| putative U2 snRNP auxiliary factor [Chenopodium rubrum]
Length = 151
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/129 (86%), Positives = 118/129 (91%), Gaps = 7/129 (5%)
Query: 14 AQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAA 66
+QGN +DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM +REEE+AA
Sbjct: 9 SQGNAIDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQYREEEEAA 68
Query: 67 RALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ 126
A ++LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKRISR+LRRQ
Sbjct: 69 NAHRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENNCNRGGYCNFMHLKRISRELRRQ 128
Query: 127 LFGRYRRRH 135
LFGRYRRRH
Sbjct: 129 LFGRYRRRH 137
>gi|168004337|ref|XP_001754868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693972|gb|EDQ80322.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/246 (59%), Positives = 162/246 (65%), Gaps = 36/246 (14%)
Query: 1 MYQRLDM-ITPGVDAQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH 57
MYQ D GVD GN DPRK+QEHFEDFYED+FEEL+KYGEIE+LN+CDNLADH
Sbjct: 51 MYQSPDAGFHGGVDQHGNIQQSDPRKLQEHFEDFYEDIFEELSKYGEIENLNVCDNLADH 110
Query: 58 M-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 110
M FREEE AA AL +LSGRFYAGRPII+DFSPVTDFREATCRQYEENTCNRGGY
Sbjct: 111 MIGNVYVKFREEEHAAAALNALSGRFYAGRPIILDFSPVTDFREATCRQYEENTCNRGGY 170
Query: 111 CNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRD--- 167
CNFMHLK+ISR+LRR+LFG YR RSRSRS SPY + RRY DRD
Sbjct: 171 CNFMHLKKISRELRRKLFGNYR---RRSRSRSHSPY---GRGEARGPPSPRRYGDRDFYD 224
Query: 168 ----------KYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNR 217
RR + R RSP REGS ERRAKI+QWNR
Sbjct: 225 SRRGGGRGGGGRGRGYGRRRDRSRSRTPTRRGRSPAA-------REGSAERRAKIDQWNR 277
Query: 218 EREQQE 223
ERE+++
Sbjct: 278 EREERQ 283
>gi|297740057|emb|CBI30239.3| unnamed protein product [Vitis vinifera]
Length = 191
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/128 (85%), Positives = 115/128 (89%), Gaps = 7/128 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DM+TPGVD QG PLDPRKIQEHFEDFYEDLFEEL+KYGEIESLNICDNLADHM
Sbjct: 51 MYQRPDMVTPGVDPQGQPLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE AA AL++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNF 170
Query: 114 MHLKRISR 121
MHLK+ISR
Sbjct: 171 MHLKKISR 178
>gi|356521086|ref|XP_003529189.1| PREDICTED: splicing factor U2af small subunit A-like isoform 1
[Glycine max]
gi|356521088|ref|XP_003529190.1| PREDICTED: splicing factor U2af small subunit A-like isoform 2
[Glycine max]
gi|356521090|ref|XP_003529191.1| PREDICTED: splicing factor U2af small subunit A-like isoform 3
[Glycine max]
Length = 271
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/140 (76%), Positives = 120/140 (85%), Gaps = 7/140 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG PLDPRKIQ+HFEDFYED+F EL K+G+IESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPRKIQQHFEDFYEDIFTELAKFGDIESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA+AL +L GRFY RPII DFSPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRR 133
MH+K I RDLRR+LFGR+ R
Sbjct: 171 MHVKLIGRDLRRRLFGRHHR 190
>gi|224132068|ref|XP_002328177.1| predicted protein [Populus trichocarpa]
gi|222837692|gb|EEE76057.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/128 (83%), Positives = 115/128 (89%), Gaps = 7/128 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQGNP+DPR+IQ+HFE+FYEDLFEEL KYGEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGNPIDPRRIQQHFEEFYEDLFEELRKYGEIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE A+ ALK+L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFREEEHASNALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENACNRGGYCNF 170
Query: 114 MHLKRISR 121
MHLKRI R
Sbjct: 171 MHLKRIGR 178
>gi|15723291|gb|AAL06331.1|AF409139_1 U2 auxiliary factor small subunit [Arabidopsis thaliana]
Length = 296
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/236 (61%), Positives = 166/236 (70%), Gaps = 21/236 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN C RGGYCNF
Sbjct: 111 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCYRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSR-----SPYRHRSHEDRSHSGHGRRYDDRDK 168
MH+K +SR+LRR+L GRYRR + R SP R ++ R S + DRD+
Sbjct: 171 MHVKLVSRELRRKLSGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 230
Query: 169 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP--------VREGSEERRAKIEQWN 216
+ RS+ S R+ R S GRR SP REGSEERRA+IEQWN
Sbjct: 231 EFYRHGSGKRSSERSERQERDGS-RGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>gi|218197274|gb|EEC79701.1| hypothetical protein OsI_20991 [Oryza sativa Indica Group]
Length = 308
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 119/135 (88%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
>gi|115465463|ref|NP_001056331.1| Os05g0564200 [Oryza sativa Japonica Group]
gi|75323083|sp|Q6AUG0.1|U2AFB_ORYSJ RecName: Full=Splicing factor U2af small subunit B; AltName:
Full=U2 auxiliary factor 35 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit B; Short=U2 snRNP auxiliary factor small
subunit B; AltName: Full=Zinc finger CCCH
domain-containing protein 38; Short=OsC3H38
gi|50511477|gb|AAT77399.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa Japonica
Group]
gi|113579882|dbj|BAF18245.1| Os05g0564200 [Oryza sativa Japonica Group]
gi|215687259|dbj|BAG91824.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740784|dbj|BAG96940.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632568|gb|EEE64700.1| hypothetical protein OsJ_19555 [Oryza sativa Japonica Group]
Length = 304
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 119/135 (88%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
>gi|3850816|emb|CAA77132.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length = 301
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 119/135 (88%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
>gi|357438827|ref|XP_003589690.1| Splicing factor U2af small subunit B [Medicago truncatula]
gi|355478738|gb|AES59941.1| Splicing factor U2af small subunit B [Medicago truncatula]
Length = 272
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 123/167 (73%), Gaps = 7/167 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR D+ITPGVD G P+DPR+IQ+HFEDFYED+F EL+K+G +E+LN+CDNLADHM
Sbjct: 51 MYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+ AA AL SL GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHG 160
MH+K+I R+LRR+LF RR R R ED G G
Sbjct: 171 MHVKKIGRELRRKLFSSQRREAEAENERGRVIEIMIRVEDGVVIGIG 217
>gi|224068961|ref|XP_002326241.1| predicted protein [Populus trichocarpa]
gi|222833434|gb|EEE71911.1| predicted protein [Populus trichocarpa]
Length = 209
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 115/132 (87%), Gaps = 9/132 (6%)
Query: 1 MYQRLDMITPGVD--AQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM 58
MYQR DM+TPGVD AQ LDPRKIQ+HFEDFYEDLFEEL+KYG+IESLNICDNLADHM
Sbjct: 51 MYQRPDMLTPGVDPQAQSQSLDPRKIQDHFEDFYEDLFEELSKYGDIESLNICDNLADHM 110
Query: 59 -------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 111
FREEE AA AL++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYC
Sbjct: 111 VGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYC 170
Query: 112 NFMHLKRISRDL 123
NFMHLK+ISR L
Sbjct: 171 NFMHLKKISRWL 182
>gi|357132564|ref|XP_003567899.1| PREDICTED: splicing factor U2af small subunit B-like [Brachypodium
distachyon]
Length = 308
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/135 (72%), Positives = 119/135 (88%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG+ +DP K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGHTIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
>gi|297597337|ref|NP_001043811.2| Os01g0667800 [Oryza sativa Japonica Group]
gi|255673535|dbj|BAF05725.2| Os01g0667800 [Oryza sativa Japonica Group]
Length = 207
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 112/126 (88%), Gaps = 7/126 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPR++QEHFEDFYED+FEEL+K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GRPIIVDFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRI 119
H+K+I
Sbjct: 171 THVKQI 176
>gi|217073019|gb|ACJ84869.1| unknown [Medicago truncatula]
Length = 228
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 115/135 (85%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR D+ITPGVD G P+DPR+IQ+HFEDFYED+F EL+K+G +E+LN+CDNLADHM
Sbjct: 51 MYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+ AA AL SL GRFY GRPI+ DFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+LF
Sbjct: 171 MHVKKIGRELRRKLF 185
>gi|326522777|dbj|BAJ88434.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 325
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 117/135 (86%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG + P K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGVAIAPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 11/56 (19%)
Query: 167 DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQ 222
D+Y + RR+ + P RRGRS P RE SEERRAKIEQWNRERE++
Sbjct: 281 DRYDDGPRRRYGGSPP--RRGRS---------PPARENSEERRAKIEQWNREREEK 325
>gi|56202175|dbj|BAD73653.1| U2 auxiliary factor small chain-like [Oryza sativa Japonica Group]
Length = 258
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/230 (54%), Positives = 144/230 (62%), Gaps = 25/230 (10%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPR++QEHFEDFYED+FEEL+K+GEIE+LN+CDNLADHM
Sbjct: 46 MYQRPDMITPGVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIG 105
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GRPIIVDFSPVTDFREATCRQ
Sbjct: 106 NVYVQFREEDQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQLG------------ 153
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
+ RDLR++LFG YR+ RHR GR
Sbjct: 154 -----LGRDLRKKLFGHYRKPQRGRSRSPSPSPRHRRERHDRDDYRGRDDYSGGGGRRGG 208
Query: 174 SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
S RH RR SP RR SPVRE SEERRAKIEQWNRER++++
Sbjct: 209 SSRHERHDDGGRRRHGGSP-PRRARSPVRESSEERRAKIEQWNRERDEKQ 257
>gi|222619017|gb|EEE55149.1| hypothetical protein OsJ_02948 [Oryza sativa Japonica Group]
Length = 263
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/230 (54%), Positives = 144/230 (62%), Gaps = 25/230 (10%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPR++QEHFEDFYED+FEEL+K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GRPIIVDFSPVTDFREATCRQ
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQLG------------ 158
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
+ RDLR++LFG YR+ RHR GR
Sbjct: 159 -----LGRDLRKKLFGHYRKPQRGRSRSPSPSPRHRRERHDRDDYRGRDDYSGGGGRRGG 213
Query: 174 SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
S RH RR SP RR SPVRE SEERRAKIEQWNRER++++
Sbjct: 214 SSRHERHDDGGRRRHGGSP-PRRARSPVRESSEERRAKIEQWNRERDEKQ 262
>gi|125527192|gb|EAY75306.1| hypothetical protein OsI_03197 [Oryza sativa Indica Group]
Length = 263
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 125/230 (54%), Positives = 144/230 (62%), Gaps = 25/230 (10%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPR++QEHFEDFYED+FEEL+K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GRPIIVDFSPVTDFREATCRQ
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQLG------------ 158
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESR 173
+ RDLR++LFG YR+ RHR GR
Sbjct: 159 -----LGRDLRKKLFGHYRKPQRGRSRSPSPSPRHRRERHDRDDYRGRDDYSGGGGRRGG 213
Query: 174 SRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
S RH RR SP RR SPVRE SEERRAKIEQWNRER++++
Sbjct: 214 SSRHERHDDGGRRRHGGSP-PRRARSPVRESSEERRAKIEQWNRERDEKQ 262
>gi|125527197|gb|EAY75311.1| hypothetical protein OsI_03202 [Oryza sativa Indica Group]
Length = 265
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/232 (54%), Positives = 145/232 (62%), Gaps = 27/232 (11%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DPR++QEHFEDFYED+FEEL+K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPRQMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAA A +L GRFY+GRPIIVDFSPVTDFREATCRQ
Sbjct: 111 NVYVQFREEDQAAAAHTALQGRFYSGRPIIVDFSPVTDFREATCRQLG------------ 158
Query: 114 MHLKRISRDLRRQLFGRYRR--RHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYE 171
+ RDLR++LFG YR+ R RHR GR
Sbjct: 159 -----LGRDLRKKLFGHYRKPQRGRSRSPSPSPSPRHRRERHDRDDYRGRDDYSGGGGRR 213
Query: 172 SRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
S RH RR SP RR SPVRE SEERRAKIEQWNRER++++
Sbjct: 214 GGSSRHERHDDGGRRRHGGSP-PRRARSPVRESSEERRAKIEQWNRERDEKQ 264
>gi|302756127|ref|XP_002961487.1| hypothetical protein SELMODRAFT_230014 [Selaginella moellendorffii]
gi|300170146|gb|EFJ36747.1| hypothetical protein SELMODRAFT_230014 [Selaginella moellendorffii]
Length = 200
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/126 (80%), Positives = 111/126 (88%), Gaps = 7/126 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DM TPG+D G +D +KIQEHFEDFYED+FEEL+KYGEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMATPGMDLNGQTMDQKKIQEHFEDFYEDMFEELSKYGEIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE+AA ALK+LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEEAAAALKALSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MHLKRI 119
MHL+RI
Sbjct: 171 MHLRRI 176
>gi|307107585|gb|EFN55827.1| hypothetical protein CHLNCDRAFT_57737 [Chlorella variabilis]
Length = 395
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 114/140 (81%), Gaps = 8/140 (5%)
Query: 1 MYQRLDMITP-GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM- 58
MYQ + P G D P+DP+K+QE FEDFYED+F EL K+GE+E LN+CDNLADHM
Sbjct: 51 MYQNPILNAPLGPDGLPMPVDPKKVQEFFEDFYEDIFLELAKFGEVEYLNVCDNLADHMV 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR+EE+AARAL+ + GR+YAG+PI+V+FSPVTDFREATCRQYEEN C+RGGYCN
Sbjct: 111 GNVYVKFRDEEEAARALQGMQGRYYAGKPIVVEFSPVTDFREATCRQYEENNCSRGGYCN 170
Query: 113 FMHLKRISRDLRRQLFGRYR 132
FMH++ +SR+LR+QLFGRY+
Sbjct: 171 FMHVRPVSRELRKQLFGRYK 190
>gi|384254294|gb|EIE27768.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/132 (68%), Positives = 110/132 (83%), Gaps = 7/132 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
PG D P+D RK QEHFEDFYED+FEE++KYG+IE LN+CDNLADHM F +E
Sbjct: 61 PGPDGLPMPVDARKSQEHFEDFYEDIFEEMDKYGQIEHLNVCDNLADHMVGNVYIKFVDE 120
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ AARAL+ L+GRFYAGRPI+++FSPVTDFREATCRQYEENTC RGGYCNFMHL+ IS+
Sbjct: 121 DAAARALQGLTGRFYAGRPIMIEFSPVTDFREATCRQYEENTCTRGGYCNFMHLRPISKG 180
Query: 123 LRRQLFGRYRRR 134
LR+ LFGRY+++
Sbjct: 181 LRKDLFGRYKKK 192
>gi|302776046|ref|XP_002971319.1| hypothetical protein SELMODRAFT_67301 [Selaginella moellendorffii]
gi|300161301|gb|EFJ27917.1| hypothetical protein SELMODRAFT_67301 [Selaginella moellendorffii]
Length = 275
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/122 (81%), Positives = 107/122 (87%), Gaps = 7/122 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DM TPG+D G +D +KIQEHFEDFYED+FEEL+KYGEIESLN+CDNLADHM
Sbjct: 51 MYQRPDMATPGMDLNGQTMDQKKIQEHFEDFYEDMFEELSKYGEIESLNVCDNLADHMVG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEE+AA ALK+LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF
Sbjct: 111 NVYVQFREEEEAAAALKALSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 170
Query: 114 MH 115
MH
Sbjct: 171 MH 172
>gi|159476640|ref|XP_001696419.1| U2 snRNP auxiliary factor, small subunit [Chlamydomonas
reinhardtii]
gi|158282644|gb|EDP08396.1| U2 snRNP auxiliary factor, small subunit [Chlamydomonas
reinhardtii]
Length = 273
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/140 (67%), Positives = 111/140 (79%), Gaps = 8/140 (5%)
Query: 1 MYQRLDMITP-GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM- 58
MYQ + P G D +DPR QEHFEDFYED+FEEL +GE+E+LN+CDN ADHM
Sbjct: 51 MYQNPLLNAPLGPDGLPIRVDPRAAQEHFEDFYEDVFEELAAHGELENLNVCDNFADHMV 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR+E+ AARAL +L GR+Y GRPIIV+FSPVTDFREATCRQYEENTCNRGGYCN
Sbjct: 111 GNVYAKFRDEDAAARALTALQGRYYDGRPIIVEFSPVTDFREATCRQYEENTCNRGGYCN 170
Query: 113 FMHLKRISRDLRRQLFGRYR 132
FMHLK ISR+LR++LFGRY+
Sbjct: 171 FMHLKPISRELRKKLFGRYK 190
>gi|255089300|ref|XP_002506572.1| predicted protein [Micromonas sp. RCC299]
gi|226521844|gb|ACO67830.1| predicted protein [Micromonas sp. RCC299]
Length = 224
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 101/120 (84%), Gaps = 7/120 (5%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSL 72
DPR IQEHFEDFYED+FEEL KYGEIE LN+CDN +DH+ FREEE A AL +L
Sbjct: 70 DPRAIQEHFEDFYEDIFEELAKYGEIEGLNVCDNTSDHLIGNVYVKFREEESALAALNAL 129
Query: 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYR 132
SGRFY+GRPI+ +FSPVTDFRE+TCRQYEENTCNRGGYCNFMHLK ISR LR+ LFGRY+
Sbjct: 130 SGRFYSGRPILCEFSPVTDFRESTCRQYEENTCNRGGYCNFMHLKPISRQLRKILFGRYK 189
>gi|303287873|ref|XP_003063225.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455057|gb|EEH52361.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 324
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/120 (75%), Positives = 101/120 (84%), Gaps = 7/120 (5%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSL 72
D RK+QEHFEDFYED+FEEL YGEIE LNICDNLADH+ +REEE A AL +L
Sbjct: 74 DARKMQEHFEDFYEDIFEELATYGEIEGLNICDNLADHLVGNVYVKYREEESALAALNAL 133
Query: 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYR 132
SGRFYAGRPI+ +FSPVTDFRE+TCRQYEENTC RGGYCNFMHLK ISR+LR+ LFGRY+
Sbjct: 134 SGRFYAGRPILCEFSPVTDFRESTCRQYEENTCTRGGYCNFMHLKPISRNLRKILFGRYK 193
>gi|414878158|tpg|DAA55289.1| TPA: hypothetical protein ZEAMMB73_300759 [Zea mays]
Length = 172
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 101/116 (87%), Gaps = 7/116 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL K+GEIE+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELGKFGEIENLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 109
FREEEQAA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGG
Sbjct: 111 NVYVQFREEEQAAVAYNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGG 166
>gi|302846943|ref|XP_002955007.1| hypothetical protein VOLCADRAFT_83022 [Volvox carteri f.
nagariensis]
gi|300259770|gb|EFJ43995.1| hypothetical protein VOLCADRAFT_83022 [Volvox carteri f.
nagariensis]
Length = 288
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/139 (66%), Positives = 111/139 (79%), Gaps = 8/139 (5%)
Query: 1 MYQRLDMITP-GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM- 58
MYQ + P G D +DP+ QEHFEDFYED+FEEL ++GE+E+LN+CDN ADHM
Sbjct: 51 MYQNPLLNAPLGPDGLPIRVDPKAAQEHFEDFYEDVFEELAQHGELENLNVCDNFADHMV 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR+E+ AARAL++L GR+Y GRPI+V+FSPVTDFREATCRQYEENTCNRGGYCN
Sbjct: 111 GNVYAKFRDEDAAARALQALQGRYYDGRPIVVEFSPVTDFREATCRQYEENTCNRGGYCN 170
Query: 113 FMHLKRISRDLRRQLFGRY 131
FMHLK I R+LRR+LFGRY
Sbjct: 171 FMHLKPIGRELRRKLFGRY 189
>gi|193875780|gb|ACF24526.1| mRNA splicing factor U2 associated factor [Gymnochlora stellata]
Length = 182
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 108/144 (75%), Gaps = 8/144 (5%)
Query: 1 MYQRLDMITP-GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM- 58
MYQ + P G D PL+P +Q HF+ FY+D++EELN +G+IE+LN+CDNL+DHM
Sbjct: 39 MYQNPALTAPLGKDGLPKPLNPYNLQSHFQKFYKDIYEELNFFGDIENLNVCDNLSDHMI 98
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
+R+E+ A +ALKS++GRFYAGR I+ + SPVTDFRE+TCRQY++NTC+RGGYCN
Sbjct: 99 GNVYVKYRQEKSAMKALKSINGRFYAGRIIVAETSPVTDFRESTCRQYDDNTCSRGGYCN 158
Query: 113 FMHLKRISRDLRRQLFGRYRRRHS 136
FMHLK I R LR++LF R + S
Sbjct: 159 FMHLKPIKRSLRKELFTRVTKSKS 182
>gi|325180898|emb|CCA15308.1| splicing factor U2AF 35 kDa subunit putative [Albugo laibachii
Nc14]
Length = 331
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 121/176 (68%), Gaps = 28/176 (15%)
Query: 1 MYQRLDMITPGVDAQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM 58
MYQ + ++ + G+P LD +K+ E FEDFYE++FEEL K+G++E LNICDNL DH+
Sbjct: 100 MYQ--NPLSQIIAQNGDPSGLDQKKVDEDFEDFYEEVFEELCKFGKVEELNICDNLGDHL 157
Query: 59 -------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 111
+ +EE AA A KSL GRFYAGRP++ +FSPVTDFREA CRQ++E TCNRGGYC
Sbjct: 158 VGNVYVKYEDEEHAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYC 217
Query: 112 NFMHLKRISRDLRRQ---LFGRYR-------------RRHSRSRSRSRSPYRHRSH 151
NFMH+K +SR ++R+ L+ RY+ R HS+SRSRS P +H+ H
Sbjct: 218 NFMHVKTVSRSMQRELERLYNRYKPPRRGKSRSVSKSRGHSKSRSRS-PPRKHKKH 272
>gi|301115075|ref|XP_002999307.1| splicing factor U2AF 35 kDa subunit [Phytophthora infestans T30-4]
gi|262111401|gb|EEY69453.1| splicing factor U2AF 35 kDa subunit [Phytophthora infestans T30-4]
Length = 340
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 102/136 (75%), Gaps = 11/136 (8%)
Query: 1 MYQRLDMITPGVDAQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM 58
MYQ + I + G+P LD R++ E FEDFYE++FEEL K+G++E LNICDNL DH+
Sbjct: 106 MYQ--NPIAQVIAQNGDPASLDQRQVDEDFEDFYEEVFEELCKFGKVEELNICDNLGDHL 163
Query: 59 -------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 111
+ +EE AA A KSL GRFYAGRP++ +FSPVTDFREA CRQ++E TCNRGGYC
Sbjct: 164 VGNVYAKYEDEEHAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYC 223
Query: 112 NFMHLKRISRDLRRQL 127
NFMH+K +SR ++R+L
Sbjct: 224 NFMHIKTVSRSMQREL 239
>gi|323454278|gb|EGB10148.1| hypothetical protein AURANDRAFT_14519, partial [Aureococcus
anophagefferens]
Length = 186
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 94/123 (76%), Gaps = 9/123 (7%)
Query: 14 AQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQ 64
A G+P LDP+K+QE F+DFYE++++EL KYGEIE LN+C+NL DHM F +EE
Sbjct: 61 AGGDPSQLDPKKVQEEFDDFYEEVYDELAKYGEIEELNVCENLGDHMVGNVYAKFADEEH 120
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
+LK+L GRFYAGRP++ +FSPVTDFREA CRQY+E C RGGYCNFMH++ SR LR
Sbjct: 121 TDASLKALFGRFYAGRPLVCEFSPVTDFREARCRQYDEAVCTRGGYCNFMHIRTPSRSLR 180
Query: 125 RQL 127
R L
Sbjct: 181 RDL 183
>gi|82541542|ref|XP_725006.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479849|gb|EAA16571.1| similar to RIKEN cDNA 2010107D16 gene [Plasmodium yoelii yoelii]
Length = 309
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 139/225 (61%), Gaps = 21/225 (9%)
Query: 14 AQGNPLDPRKIQ---EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEE 63
A+G +D + +HFE+FYE++F+EL KYGEIE + +CDN+ DH+ + E+
Sbjct: 62 AEGQMVDDEVLDQAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHED 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +A+K L+GRFYAG+P+ ++++PVTDFREA CRQ+ + C RGGYCNFMH+K + R +
Sbjct: 122 YAEKAVKELNGRFYAGKPLQIEYTPVTDFREARCRQFVDGQCRRGGYCNFMHIKHVPRTV 181
Query: 124 RRQLFGR-YR-----RRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRH 177
+R+L R Y+ +++ +SR S +R+ + DR++ R + RDKY + +
Sbjct: 182 KRRLHKRMYKKFPMYKKNKKSRDDSDGDHRYDRYRDRNN----RDKNKRDKYGNNYNSSR 237
Query: 178 RSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQ 222
R G+ R + P RE S ERR KIE+WN+ERE +
Sbjct: 238 RRHRSQSSNGQD-DDNQRSHKYPKRENSLERREKIERWNKEREMK 281
>gi|412985218|emb|CCO20243.1| predicted protein [Bathycoccus prasinos]
Length = 307
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/133 (58%), Positives = 99/133 (74%), Gaps = 9/133 (6%)
Query: 11 GVDAQGN-PLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
G +AQG +P+ +QEH+EDF D+FEEL +GEIE LN+CDNLADHM F +E
Sbjct: 62 GGNAQGARTSEPQDVQEHYEDFCHDIFEELAIHGEIEELNVCDNLADHMVGNVYVKFADE 121
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI-SR 121
+ A +A +SL GR+Y GRPI +FSPVTDFRE+TCRQYEENTC RGGYCNFMH++ I ++
Sbjct: 122 DDAMKAKQSLDGRYYMGRPIKCEFSPVTDFRESTCRQYEENTCTRGGYCNFMHVRPIKNQ 181
Query: 122 DLRRQLFGRYRRR 134
L LFGRY ++
Sbjct: 182 TLAHALFGRYGKK 194
>gi|124803997|ref|XP_001347871.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium
falciparum 3D7]
gi|23496123|gb|AAN35784.1|AE014838_62 U2 snRNP auxiliary factor, small subunit, putative [Plasmodium
falciparum 3D7]
Length = 294
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 137/240 (57%), Gaps = 26/240 (10%)
Query: 8 ITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FR 60
I G + LD K +HFE+FYE++F+EL KYGEIE + +CDN+ DH+ +
Sbjct: 61 IAEGQMVEDEVLD--KAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYT 118
Query: 61 EEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
E+ A +A+ L+GRFYAG+P+ ++++PVTDFREA CRQ+ E C RGGYCNFMH+K +
Sbjct: 119 HEDYAEKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVP 178
Query: 121 RDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRY---DDRDKYYESRSRRH 177
R ++R+LF R +++ + R R+ +D S GRR + +DKY R H
Sbjct: 179 RTVKRKLFRRMYKKYPEYKKR-------RARKDDSDDD-GRRESYREGKDKYKRDRRSSH 230
Query: 178 RSTSP---SHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQ---EEAYKGNTD 231
+S R Y RE S ERR KIE+WN+ERE + +E K N D
Sbjct: 231 HYSSKRKNRSDNEDDDDDEERSYKHARRENSAERREKIERWNKEREMKNMNKEDNKSNAD 290
>gi|302808806|ref|XP_002986097.1| hypothetical protein SELMODRAFT_123490 [Selaginella moellendorffii]
gi|300146245|gb|EFJ12916.1| hypothetical protein SELMODRAFT_123490 [Selaginella moellendorffii]
Length = 262
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 134/231 (58%), Gaps = 32/231 (13%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ + ITPG + + ++Q+ + FYED+F+E++K+G++E+L IC+N +H+
Sbjct: 53 MYQSPE-ITPGQAYRNTAISKEELQKDLDAFYEDVFKEVSKHGKVEALKICNNFGNHLAG 111
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FR EE A A+ +L+GRFY+GRPI +FSPVTDFREA+CRQ E+ C+RGG CNF
Sbjct: 112 NVYVQFRHEEHAVAAMAALNGRFYSGRPIAAEFSPVTDFREASCRQEEQGGCSRGGCCNF 171
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGR--RYDDRDKYYE 171
+HL R SR L R+L G RS S R +R R E+ H R R +D ++ Y
Sbjct: 172 LHLYRPSRALMRELMG------DRSSSPPRRDHRRRPREEDGERDHKRRPREEDGERDYR 225
Query: 172 SRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQ 222
RH SP R RE ER AKIE+WN+ERE++
Sbjct: 226 RDGERHTRRSPPWR----------------RESDRERLAKIERWNKEREKE 260
>gi|68070599|ref|XP_677211.1| U2 snRNP auxiliary factor, small subunit [Plasmodium berghei strain
ANKA]
gi|56497237|emb|CAI00252.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium
berghei]
Length = 304
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 143/245 (58%), Gaps = 22/245 (8%)
Query: 14 AQGNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEE 63
A+G +D + + HFE+FYE++F+EL KYGEIE + +CDN+ DH+ + E+
Sbjct: 62 AEGQMVDDEVLDQAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHED 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +A+K L+GRFYAG+P+ ++++PVTDFREA CRQ+ + C RGGYCNFMH+K + R +
Sbjct: 122 YAEKAIKELNGRFYAGKPLQIEYTPVTDFREARCRQFVDGQCRRGGYCNFMHIKHVPRTV 181
Query: 124 RRQLFGRYRRR------HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRH 177
+R+L R ++ + +S+ S +RH + DR+ R RDKY S +
Sbjct: 182 KRRLHKRMYKKFPMYKKNKKSKDDSDGEHRHDRYRDRN----NRDKHKRDKYGNSYNSSR 237
Query: 178 RSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQ 237
R + R Y P RE S ERR KIE+WN+ERE + + K N + + +
Sbjct: 238 RRHRSQSSNDQD-DDNERSYKHPKRENSLERREKIERWNKEREMK-NSQKNNNENEDTTK 295
Query: 238 GINND 242
NND
Sbjct: 296 VENND 300
>gi|156086588|ref|XP_001610703.1| U2 splicing factor subunit [Babesia bovis T2Bo]
gi|154797956|gb|EDO07135.1| U2 splicing factor subunit, putative [Babesia bovis]
Length = 251
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 116/217 (53%), Gaps = 54/217 (24%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
K +HFE+FYE++F EL KYGEIE + +CDN+ DH+ +R+E AA A+ LSGR
Sbjct: 74 KAADHFEEFYEEVFLELMKYGEIEDMVVCDNIGDHIIGNVYVKYRDENSAAHAISMLSGR 133
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-------F 128
FY G+PI +++PVTDFREA CRQ+ E C RGGYCNFMH+K + R +RR+L F
Sbjct: 134 FYGGKPIQCEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVPRSVRRKLDERMYAEF 193
Query: 129 GRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
Y++R RS RS RY D + S
Sbjct: 194 PEYKKRALRSSERS------------------GRYVDSEALITFHS-------------- 221
Query: 189 SRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEA 225
Y P R+ S+ERR IE WNRER+ +E A
Sbjct: 222 --------YERPKRQTSQERRNMIEMWNRERDARENA 250
>gi|308812528|ref|XP_003083571.1| U2 snRNP auxiliary factor, small subunit (ISS) [Ostreococcus tauri]
gi|116055452|emb|CAL58120.1| U2 snRNP auxiliary factor, small subunit (ISS) [Ostreococcus tauri]
Length = 246
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 100/154 (64%), Gaps = 22/154 (14%)
Query: 12 VDAQGNPLDPR-----------KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
+ G +DPR Q HFE F EDLFEEL++ GEIE +N+CDN DHM
Sbjct: 54 AEGAGGTVDPRDAASGKSASASAGQGHFEAFVEDLFEELDECGEIEGVNVCDNATDHMAG 113
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F +E+ A RAL+ L GR+Y GRPI+V++SPVTDF+E+TCRQYEEN+C RGGYCNF
Sbjct: 114 NVYVKFVDEDGARRALEKLQGRYYDGRPILVEYSPVTDFKESTCRQYEENSCTRGGYCNF 173
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYR 147
MHL+ I R +R+QL RRR + S + S R
Sbjct: 174 MHLRPIGRSMRKQL----RRRATGSSTMDASTRR 203
>gi|161899399|ref|XP_001712926.1| mRNA splicing factor U2 associated factor [Bigelowiella natans]
gi|75756420|gb|ABA27314.1| mRNA splicing factor U2 associated factor [Bigelowiella natans]
Length = 193
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 98/137 (71%), Gaps = 8/137 (5%)
Query: 1 MYQRLDMITP-GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM- 58
+YQ + P G D P +P K Q+ FE FYEDLF+E++ +G+I+++ +CDNL+DH+
Sbjct: 51 LYQNPALKAPVGKDGLPKPKNPYKSQKQFEFFYEDLFQEMSFFGDIDNIYVCDNLSDHLI 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
F +++ A +ALKS+SGRFY R I+ + SPVTDFRE+TCRQYE+NTCNRGGYCN
Sbjct: 111 GNVYVKFLKDKSAMKALKSVSGRFYDKRLIVAETSPVTDFRESTCRQYEDNTCNRGGYCN 170
Query: 113 FMHLKRISRDLRRQLFG 129
FMHLK + R R ++F
Sbjct: 171 FMHLKPLKRSFRNKIFS 187
>gi|145354635|ref|XP_001421585.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581823|gb|ABO99878.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 243
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 83/108 (76%), Gaps = 7/108 (6%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFY 77
QE FE F ED+FEEL++ GEIE +N+CDN+ DHM F EEE A RA++ L GR+Y
Sbjct: 77 QEGFEAFVEDVFEELDECGEIEGVNVCDNVTDHMMGNVYVKFVEEEAAGRAVEKLRGRYY 136
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125
GRPI +FSPVTDFRE+TCRQYEEN+C RGGYCNFMHLK I R +R+
Sbjct: 137 DGRPIAAEFSPVTDFRESTCRQYEENSCTRGGYCNFMHLKPIGRGMRK 184
>gi|330835935|ref|XP_003292017.1| hypothetical protein DICPUDRAFT_57704 [Dictyostelium purpureum]
gi|325077756|gb|EGC31448.1| hypothetical protein DICPUDRAFT_57704 [Dictyostelium purpureum]
Length = 429
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 99/155 (63%), Gaps = 16/155 (10%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++Q+HF++FYED+FE L KYG+++ LN+C NL DH+ + E++A ++K L GR
Sbjct: 75 ELQQHFDEFYEDIFEGLTKYGQVDLLNVCANLGDHLVGNVYVKYAREDEANESIKGLKGR 134
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH 135
FY GRPII +FSPVTDF EA CRQY+ CNRGGYCNFMHL S+ L+ +LFG
Sbjct: 135 FYDGRPIIAEFSPVTDFTEARCRQYDIGACNRGGYCNFMHLHTPSKSLQIKLFG------ 188
Query: 136 SRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYY 170
RSRSP +E RY+DRD+ Y
Sbjct: 189 ---DRRSRSPSPRGRYERGGGGRDQERYNDRDRDY 220
>gi|432930414|ref|XP_004081462.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Oryzias
latipes]
Length = 230
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 94/129 (72%), Gaps = 8/129 (6%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR+EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRKEEDAEKAMLDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+PI + SPVTDFREA C QYE C RGG+CNFMHLK ISRDLRRQL+G R+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCHQYETGGCTRGGFCNFMHLKPISRDLRRQLYGHRRKS 192
Query: 135 HSRSRSRSR 143
R RSR R
Sbjct: 193 RQRPRSRDR 201
>gi|156543322|ref|XP_001606160.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Nasonia
vitripennis]
Length = 242
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 9/132 (6%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYR-R 133
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISRDLRR L+ R +
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRDLRRYLYSRKKGG 194
Query: 134 RHSRSRSRSRSP 145
RSRSRS+SP
Sbjct: 195 GKGRSRSRSKSP 206
>gi|410906167|ref|XP_003966563.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Takifugu rubripes]
Length = 235
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 98/141 (69%), Gaps = 5/141 (3%)
Query: 12 VDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM---FREEEQAAR 67
DA + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +
Sbjct: 62 ADASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNFRREEDAEK 121
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L
Sbjct: 122 AVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 181
Query: 128 FGRYRRRHSRSRSRSRSPYRH 148
+GR RR+ S P RH
Sbjct: 182 YGR-RRKSQSGVSNKIIPIRH 201
>gi|357017169|gb|AET50613.1| hypothetical protein [Eimeria tenella]
Length = 252
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 114/205 (55%), Gaps = 37/205 (18%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HFE F+ ++FEEL KYGE+E + +CDN+ DH+ + +++ A +AL +L GR+ A
Sbjct: 77 DHFEAFFSEVFEELYKYGEVEDMVVCDNIGDHIIGNVYVKYSDDDAAKKALSALQGRYDA 136
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
G+PI +F+PVTDFREA CRQ+ + C RGGYCNFMHLK + R L+R+LF + H
Sbjct: 137 GKPIQAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVPRSLKRKLFNKMYEEHPEY 196
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYH 198
R R R R RS H +HR RSP R
Sbjct: 197 RQRVRGGRRSRSRSGSPH-------------------KHR-----------RSPSLHRPE 226
Query: 199 SPVREGSEERRAKIEQWNREREQQE 223
P R SEERRA I QWN+ER+ +
Sbjct: 227 RPERRTSEERRAMIAQWNQERDAAQ 251
>gi|281203736|gb|EFA77932.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 439
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 92/135 (68%), Gaps = 15/135 (11%)
Query: 18 PLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALK 70
P +IQ+HF+DFYED+ E L+KYG+IE L++C NL DH+ + E+ AA A++
Sbjct: 67 PASEEEIQKHFDDFYEDIHEGLSKYGKIELLHVCANLGDHLIGNLYVKYSTEDAAAAAIE 126
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
L GRFY GRPI+ +FSPVTDF E+ CRQ++ TC+RGG+CNFMHL SR+L +LFG
Sbjct: 127 GLKGRFYDGRPIVAEFSPVTDFNESRCRQFDLGTCDRGGFCNFMHLHNPSRELSVRLFGE 186
Query: 131 YRRRHSRSRSRSRSP 145
R+ SRSP
Sbjct: 187 --------RAASRSP 193
>gi|443704810|gb|ELU01671.1| hypothetical protein CAPTEDRAFT_164217 [Capitella teleta]
Length = 234
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 94/127 (74%), Gaps = 10/127 (7%)
Query: 19 LDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALK 70
+ ++Q+H++DF+E++F EL +KYGEIE +N+CDNL DH+ FR EE A + ++
Sbjct: 69 MSDEQVQQHYDDFFEEVFVELEDKYGEIEEMNVCDNLGDHLVGNVYIKFRSEESAEKGVE 128
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
L+ R++ GRPI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+G
Sbjct: 129 ELNNRWFNGRPIHSELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG- 187
Query: 131 YRRRHSR 137
R RHS+
Sbjct: 188 -RSRHSK 193
>gi|321468463|gb|EFX79448.1| hypothetical protein DAPPUDRAFT_52589 [Daphnia pulex]
Length = 237
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 91/130 (70%), Gaps = 12/130 (9%)
Query: 9 TPGVDAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FR 60
PG+ + + QEHF++F+ED+F E +KYGEIE +N+CDNL DH+ FR
Sbjct: 67 VPGIVTMSD----EEAQEHFDNFFEDVFAECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 122
Query: 61 EEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
EE A +A+ L+ R++AGRP+ + SPVTDFREA CRQYE C R G+CNFMHLK IS
Sbjct: 123 REEDAEKAVNDLNNRWFAGRPVYAELSPVTDFREACCRQYELGECTRSGFCNFMHLKPIS 182
Query: 121 RDLRRQLFGR 130
R+LRR+L+GR
Sbjct: 183 RELRRELYGR 192
>gi|391345692|ref|XP_003747118.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Metaseiulus
occidentalis]
Length = 229
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 92/124 (74%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEHF++F+ED+F EL +KYGEIE +N+CDNL DH+ FR+E+
Sbjct: 63 DGSHTNMTEEEMQEHFDNFFEDVFVELEDKYGEIEEMNVCDNLGDHLVGNVYVKFRKEDD 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+K L+ R++AGRP++ + SPVTDFREA CRQYE C R G+CNFMHL+ ISR+LR
Sbjct: 123 AEKAVKELNNRWFAGRPVVAELSPVTDFREACCRQYEMGECTRSGFCNFMHLRPISRELR 182
Query: 125 RQLF 128
++L+
Sbjct: 183 KELY 186
>gi|350534948|ref|NP_001232170.1| putative U2 snRNP auxiliary factor small subunit variant 1
[Taeniopygia guttata]
gi|197127858|gb|ACH44356.1| putative U2 snRNP auxiliary factor small subunit variant 1
[Taeniopygia guttata]
Length = 237
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 94/131 (71%), Gaps = 8/131 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFGRYRRRH 135
R+L+GR R++H
Sbjct: 183 RELYGRLRKKH 193
>gi|410896554|ref|XP_003961764.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Takifugu rubripes]
Length = 232
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 93/132 (70%), Gaps = 8/132 (6%)
Query: 12 VDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEE 63
D + ++QEHF++F+E++F E+ KYGE+E +NICDNL DH+ FR EE
Sbjct: 62 ADGLTCAVSDMQMQEHFDEFFEEVFSEMEEKYGEVEEMNICDNLGDHLVGNVYVKFRNEE 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+L
Sbjct: 122 DAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISREL 181
Query: 124 RRQLFGRYRRRH 135
RR+L+GR ++ H
Sbjct: 182 RRELYGRRKKGH 193
>gi|66811624|ref|XP_639991.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466958|gb|EAL65002.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 471
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 92/134 (68%), Gaps = 10/134 (7%)
Query: 14 AQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAA 66
Q L ++Q+HF++FYED++E L KYG+++ LN+C NL DH+ +++E+ A
Sbjct: 66 GQAPNLSDAELQQHFDEFYEDIYEGLAKYGQVDLLNVCANLGDHLVGNVYVKYQKEDDAN 125
Query: 67 RALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ 126
++K L GRFY GRPII +FSPVTDF EA CRQY+ TCNRGG+CNFMHL S+ L +
Sbjct: 126 ESIKGLKGRFYDGRPIISEFSPVTDFTEARCRQYDIGTCNRGGFCNFMHLHNPSKSLYYK 185
Query: 127 LFGRYRRRHSRSRS 140
LFG R SRS S
Sbjct: 186 LFG---DRKSRSPS 196
>gi|328770702|gb|EGF80743.1| hypothetical protein BATDEDRAFT_11284 [Batrachochytrium
dendrobatidis JAM81]
Length = 240
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 99/162 (61%), Gaps = 18/162 (11%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
G + P +IQE+F+ +EDLF EL KYGE+E +NICDN+ DH+ F+ EE A A
Sbjct: 60 GCTMTPDEIQENFDLLFEDLFMELAKYGELEDMNICDNVGDHLIGNVYARFKYEEDAGNA 119
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
++SL+ RFYAGRP+ + SPVTDF EA CRQYE C RGG+CNFMH+K+ S+ + + ++
Sbjct: 120 VESLNNRFYAGRPLYAELSPVTDFGEACCRQYELGECTRGGFCNFMHIKKPSKAMIKDMY 179
Query: 129 GRYRRR-----------HSRSRSRSRSPYRHRSHEDRSHSGH 159
R RSRS SR YR R E R G+
Sbjct: 180 KAQRLSIKILKPRGDEDDGRSRSHSRERYRDRPREGRERDGY 221
>gi|33086652|gb|AAP92638.1| Cb2-806 [Rattus norvegicus]
Length = 254
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 107 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 166
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+GR
Sbjct: 167 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR---- 222
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
R RSP RSH+GH R+R SP HR GR
Sbjct: 223 ----GPRHRSP-------PRSHTGH------------RPRERNRRRSPDHRHGR 253
>gi|298714129|emb|CBJ27310.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 467
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 91/129 (70%), Gaps = 9/129 (6%)
Query: 8 ITPGVDAQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM------- 58
++ + A G+P L +Q+ FEDF+E++++EL+K+GEI +N+CDNL DH+
Sbjct: 115 VSAVMAAGGDPSQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVK 174
Query: 59 FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
F +EE A ALK L GR+YA RPI+ +FSPVTDFREA CRQ++E TCNRGG CNFMH+K
Sbjct: 175 FLDEEDADSALKGLMGRWYASRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKP 234
Query: 119 ISRDLRRQL 127
+ R + L
Sbjct: 235 VPRLVMSYL 243
>gi|387914810|gb|AFK11014.1| splicing factor U2AF35 [Callorhinchus milii]
gi|392876968|gb|AFM87316.1| U2 small nuclear RNA auxiliary factor 1 [Callorhinchus milii]
gi|392879254|gb|AFM88459.1| splicing factor [Callorhinchus milii]
gi|392880418|gb|AFM89041.1| splicing factor [Callorhinchus milii]
Length = 269
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 9/152 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM- 58
+Y+ T D + ++QEH+++F+E++F E+ KYGEIE +N+CDNL DH+
Sbjct: 51 LYRNPQNCTQTADGFHCAVGDVEMQEHYDEFFEEVFTEMEEKYGEIEEMNVCDNLGDHLV 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CN
Sbjct: 111 GNVYVKFRHEEDAEKAVNDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCN 170
Query: 113 FMHLKRISRDLRRQLFGRYRRRHSRSRSRSRS 144
FMHLK ISR+LRR+L+GR RR+ + SR S
Sbjct: 171 FMHLKPISRELRRELYGR-RRKSQQQGSRVTS 201
>gi|156376577|ref|XP_001630436.1| predicted protein [Nematostella vectensis]
gi|156217457|gb|EDO38373.1| predicted protein [Nematostella vectensis]
Length = 208
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 90/136 (66%), Gaps = 8/136 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM- 58
MYQ D N + + QEH++ F+ED+F EL KYGEIE +N+CDNL DH+
Sbjct: 51 MYQNPQSAAQVADGTSNAISDVEAQEHYDRFFEDVFLELEEKYGEIEEMNVCDNLGDHLV 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR EE A +A+ L+ R+Y G+PI + SPVTDFREA CRQYE C RGG+CN
Sbjct: 111 GNVYVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFREACCRQYEMGECTRGGFCN 170
Query: 113 FMHLKRISRDLRRQLF 128
FMHL+ ISRD+RR+L+
Sbjct: 171 FMHLRPISRDVRRELY 186
>gi|291224089|ref|XP_002732040.1| PREDICTED: U2 small nuclear RNA auxillary factor 1-like
[Saccoglossus kowalevskii]
Length = 244
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 88/115 (76%), Gaps = 8/115 (6%)
Query: 24 IQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+Q+HF+DF+E++F EL+ KYGEIE +N+CDN+ DH+ FR EE A +A+ L+ R
Sbjct: 74 MQKHFDDFFEEVFTELDDKYGEIEEMNVCDNIGDHLVGNVYVKFRNEEDAEKAVNDLNNR 133
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+GR
Sbjct: 134 WFNGQPIRAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGR 188
>gi|4204470|gb|AAD13394.1| splicing factor U2AF35 [Takifugu rubripes]
Length = 211
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 8/129 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEHF++F+E++F E+ KYGE+E +NICDNL DH+ FR EE
Sbjct: 63 DGLTCAVSDMQMQEHFDEFFEEVFSEMEEKYGEVEEMNICDNLGDHLVGNVYVKFRNEED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFGRYRR 133
R+L+GR ++
Sbjct: 183 RELYGRRKK 191
>gi|47226948|emb|CAG05840.1| unnamed protein product [Tetraodon nigroviridis]
Length = 231
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 8/129 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEHF++F+E++F E+ KYGE+E +NICDNL DH+ FR EE
Sbjct: 63 DGLTCAVSDMQMQEHFDEFFEEVFSEMEEKYGEVEEMNICDNLGDHLVGNVYVKFRNEED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFGRYRR 133
R+L+GR ++
Sbjct: 183 RELYGRRKK 191
>gi|410896558|ref|XP_003961766.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 3
[Takifugu rubripes]
Length = 224
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 8/129 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEHF++F+E++F E+ KYGE+E +NICDNL DH+ FR EE
Sbjct: 63 DGLTCAVSDMQMQEHFDEFFEEVFSEMEEKYGEVEEMNICDNLGDHLVGNVYVKFRNEED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFGRYRR 133
R+L+GR ++
Sbjct: 183 RELYGRRKK 191
>gi|410896556|ref|XP_003961765.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Takifugu rubripes]
Length = 231
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 92/129 (71%), Gaps = 8/129 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEHF++F+E++F E+ KYGE+E +NICDNL DH+ FR EE
Sbjct: 63 DGLTCAVSDMQMQEHFDEFFEEVFSEMEEKYGEVEEMNICDNLGDHLVGNVYVKFRNEED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFGRYRR 133
R+L+GR ++
Sbjct: 183 RELYGRRKK 191
>gi|444513449|gb|ELV10328.1| Splicing factor U2AF 35 kDa subunit [Tupaia chinensis]
Length = 365
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 91/122 (74%), Gaps = 8/122 (6%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 155 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 214
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+GR R++
Sbjct: 215 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKK 274
Query: 135 HS 136
Sbjct: 275 QC 276
>gi|428167701|gb|EKX36656.1| hypothetical protein GUITHDRAFT_78757 [Guillardia theta CCMP2712]
Length = 216
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 88/122 (72%), Gaps = 7/122 (5%)
Query: 8 ITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FR 60
+ G A D + Q+HF++FYE+++EEL K+G+IE LN+C NL DHM +
Sbjct: 61 MMSGPTAMATAADDKASQDHFDEFYEEVYEELEKFGKIEELNVCANLGDHMIGNVYVKYE 120
Query: 61 EEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
EEEQA +AL +L+GRFYAGR I+ ++SPVTDFRE+ CRQYEE C GG+CNFMH+KR S
Sbjct: 121 EEEQAEKALNALNGRFYAGRLIMAEYSPVTDFRESRCRQYEETQCKYGGHCNFMHIKRPS 180
Query: 121 RD 122
++
Sbjct: 181 KE 182
>gi|25072205|ref|NP_739566.1| splicing factor U2AF 26 kDa subunit [Mus musculus]
gi|56912216|ref|NP_001008775.1| splicing factor U2AF 26 kDa subunit [Rattus norvegicus]
gi|81912059|sp|Q7TP17.1|U2AF4_RAT RecName: Full=Splicing factor U2AF 26 kDa subunit; AltName:
Full=Liver regeneration-related protein LRRG157/LRRG158;
AltName: Full=U2 auxiliary factor 26; AltName: Full=U2
small nuclear RNA auxiliary factor 1-like protein 4
gi|81913106|sp|Q8BGJ9.1|U2AF4_MOUSE RecName: Full=Splicing factor U2AF 26 kDa subunit; AltName: Full=U2
auxiliary factor 26; AltName: Full=U2 small nuclear RNA
auxiliary factor 1-like protein 4
gi|24637023|gb|AAN63524.1|AF419339_1 U2 auxiliary factor 26 [Mus musculus]
gi|24637025|gb|AAN63525.1| U2 auxiliary factor 26 [Mus musculus]
gi|33086654|gb|AAP92639.1| Cb2-807 [Rattus norvegicus]
gi|38511878|gb|AAH60972.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Mus musculus]
gi|74145330|dbj|BAE36125.1| unnamed protein product [Mus musculus]
gi|148692061|gb|EDL24008.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Mus musculus]
gi|149056309|gb|EDM07740.1| U2 small nuclear RNA auxiliary factor 1-like 4, isoform CRA_d
[Rattus norvegicus]
Length = 220
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+GR
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR---- 188
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
R RSP RSH+GH R+R SP HR GR
Sbjct: 189 ----GPRHRSP-------PRSHTGH------------RPRERNRRRSPDHRHGR 219
>gi|260831488|ref|XP_002610691.1| hypothetical protein BRAFLDRAFT_202693 [Branchiostoma floridae]
gi|229296058|gb|EEN66701.1| hypothetical protein BRAFLDRAFT_202693 [Branchiostoma floridae]
Length = 197
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 91/124 (73%), Gaps = 8/124 (6%)
Query: 14 AQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQA 65
+ N + ++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A
Sbjct: 65 SHCNNISDVEMQEHYDNFFEEVFTELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDA 124
Query: 66 ARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125
+A+K L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR
Sbjct: 125 EKAVKDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRR 184
Query: 126 QLFG 129
+L+G
Sbjct: 185 ELYG 188
>gi|390354481|ref|XP_789191.3| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Strongylocentrotus purpuratus]
gi|390354483|ref|XP_003728344.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Strongylocentrotus purpuratus]
Length = 241
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 103/143 (72%), Gaps = 9/143 (6%)
Query: 11 GVDAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREE 62
G+ Q N L ++Q+HF+DF+E++F E+ KYGEIE +N+CDNL DH+ FR E
Sbjct: 69 GIADQSN-LSDVEVQQHFDDFFEEVFAEMEQKYGEIEEMNVCDNLGDHLVGNVYVKFRYE 127
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A++ L+ R++ +PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+
Sbjct: 128 EDAEKAVEDLNNRWFNRQPIRAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 187
Query: 123 LRRQLFGRYRRRHSRSRSRSRSP 145
LRR+L+GR +R+ SRS+S SP
Sbjct: 188 LRRELYGRRKRKKRSSRSKSTSP 210
>gi|355727234|gb|AES09127.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Mustela putorius
furo]
Length = 168
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 102/167 (61%), Gaps = 23/167 (13%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM- 58
+YQ D + ++QEH+++F+E++F EL KYGEIE +N+CDNL DH+
Sbjct: 16 LYQNPQNTAQTADGSHCHVSDEEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLV 75
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR EE A RA+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+CN
Sbjct: 76 GNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCN 135
Query: 113 FMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGH 159
FMHL+ ISR+L+RQL+GR R RSP RSH+GH
Sbjct: 136 FMHLRPISRNLQRQLYGR--------GPRHRSP-------PRSHTGH 167
>gi|281352323|gb|EFB27907.1| hypothetical protein PANDA_021410 [Ailuropoda melanoleuca]
Length = 178
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 91/120 (75%), Gaps = 8/120 (6%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 59 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 118
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+GR R++
Sbjct: 119 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKK 178
>gi|410906165|ref|XP_003966562.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Takifugu rubripes]
Length = 223
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 90/122 (73%), Gaps = 4/122 (3%)
Query: 12 VDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM---FREEEQAAR 67
DA + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +
Sbjct: 62 ADASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNFRREEDAEK 121
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L
Sbjct: 122 AVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 181
Query: 128 FG 129
+G
Sbjct: 182 YG 183
>gi|311334534|emb|CBN08648.1| U2 small nuclear RNA auxiliary factor 1 [Microcosmus squamiger]
Length = 206
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 89/116 (76%), Gaps = 8/116 (6%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL +KYG+IE +N+CDNL DH+ F +EE A +A+ L+
Sbjct: 65 EMQEHYDEFFEEVFTELEDKYGDIEEMNVCDNLGDHLVGNVYIKFHKEEDAEKAVNDLNN 124
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISRDLRR+L+GR
Sbjct: 125 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRDLRRKLYGR 180
>gi|405969065|gb|EKC34075.1| Splicing factor U2AF 26 kDa subunit [Crassostrea gigas]
Length = 269
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 89/120 (74%), Gaps = 7/120 (5%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
+ +D ++Q+ +++F+E+++ EL KYGEIE +N+CDNL DH+ FR EE A +A+
Sbjct: 91 DKMDDTELQQFYDEFFEEVYVELEKYGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKAV 150
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
L+ R++ GRP+ + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+G
Sbjct: 151 NELNNRWFNGRPVHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 210
>gi|149286928|gb|ABR23363.1| U2 snRNP splicing factor small subunit [Ornithodoros parkeri]
Length = 268
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 92/137 (67%), Gaps = 21/137 (15%)
Query: 19 LDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALK 70
+ ++QEHF++F+ED+F EL +KYGEIE +N+CDNL DH+ FR EE A +A+
Sbjct: 70 MTEEEMQEHFDNFFEDVFVELEDKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVA 129
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENT-------------CNRGGYCNFMHLK 117
L+ R++AG PI + SPVTDFREA CRQYE C R G+CNFMHLK
Sbjct: 130 DLNNRWFAGHPIYSELSPVTDFREACCRQYEMGLKAKTWRGKTASEECTRSGFCNFMHLK 189
Query: 118 RISRDLRRQLFGRYRRR 134
ISR+LRR+L+GR RR+
Sbjct: 190 PISRELRRELYGRKRRK 206
>gi|302815930|ref|XP_002989645.1| hypothetical protein SELMODRAFT_4876 [Selaginella moellendorffii]
gi|300142616|gb|EFJ09315.1| hypothetical protein SELMODRAFT_4876 [Selaginella moellendorffii]
Length = 217
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 94/136 (69%), Gaps = 8/136 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ + ITPG + + ++Q+ + FYED+F+E++K+G++E+L IC+N +H+
Sbjct: 50 MYQSPE-ITPGQAYRNTAISKEELQKDLDAFYEDVFKEVSKHGKVEALKICNNFGNHLAG 108
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FR EE A A+ +L+GRFY+GRPI +FSPVTDFREA+CRQ E+ C+RGG CNF
Sbjct: 109 NVYVQFRHEEHAVAAMAALNGRFYSGRPIAAEFSPVTDFREASCRQEEQGGCSRGGCCNF 168
Query: 114 MHLKRISRDLRRQLFG 129
+HL SR L R+L G
Sbjct: 169 LHLYHPSRALMRELMG 184
>gi|156098591|ref|XP_001615311.1| U2 snRNP auxiliary factor, small subunit [Plasmodium vivax Sal-1]
gi|148804185|gb|EDL45584.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium
vivax]
Length = 316
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 113/198 (57%), Gaps = 14/198 (7%)
Query: 39 LNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91
L KYGEIE + +CDN+ DH+ + E+ A +A+K L+GRFYAG+P+ ++++PVTD
Sbjct: 90 LMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVKELNGRFYAGKPLQIEYTPVTD 149
Query: 92 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPY----- 146
FREA CRQ+ + C RGGYCNFMH+K + R ++R+L+ R ++ + R ++
Sbjct: 150 FREARCRQFVDGQCRRGGYCNFMHIKHVPRAVKRKLYKRMYKKFPEYKKRRKTKDGSEDG 209
Query: 147 RHRSHEDRSHSGHGRR--YDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREG 204
H SH DR RR Y D R+R + RR+ P RE
Sbjct: 210 YHDSHRDRGSRDKHRRDKYGDSHHSSRRRNRSRSRSRNRDDADGDSDGASRRHKHPRREN 269
Query: 205 SEERRAKIEQWNREREQQ 222
S ERR KIE+WN+ERE +
Sbjct: 270 SAERREKIERWNKEREMK 287
>gi|390478246|ref|XP_002761504.2| PREDICTED: uncharacterized protein LOC100415206 [Callithrix
jacchus]
Length = 933
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 766 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 825
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 826 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 879
>gi|431918574|gb|ELK17792.1| Splicing factor U2AF 26 kDa subunit [Pteropus alecto]
Length = 223
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 104/174 (59%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 76 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 135
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+G +
Sbjct: 136 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYG----Q 191
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
+ RS RS HR E R+R SP HR GR
Sbjct: 192 GPKHRSPPRSQTHHRPQE-----------------------RNRRRSPDHRHGR 222
>gi|384494564|gb|EIE85055.1| hypothetical protein RO3G_09765 [Rhizopus delemar RA 99-880]
Length = 243
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L ++QE+F+ FYED+F EL K+GE+E + +CDN+ DH+ +R EE A A++S
Sbjct: 63 LTESQLQENFDLFYEDVFMELAKFGEVEDMVVCDNVGDHLVGNVYCQYRLEESAGNAVES 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
L+ RFYAGRP+ + SPVTDFREA CRQ+E CNRGG+CNFMHLK +R +RR+L+
Sbjct: 123 LNNRFYAGRPLYAELSPVTDFREACCRQHEIAECNRGGFCNFMHLKHPTRTMRRELY 179
>gi|348537122|ref|XP_003456044.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Oreochromis
niloticus]
Length = 227
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 8/125 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
DA + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRHEED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFG 129
R+L+G
Sbjct: 183 RELYG 187
>gi|47220971|emb|CAF98200.1| unnamed protein product [Tetraodon nigroviridis]
Length = 227
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 90/125 (72%), Gaps = 8/125 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
DA + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLFG 129
R+L+G
Sbjct: 183 RELYG 187
>gi|290461985|gb|ADD24040.1| Splicing factor U2af 38 kDa subunit [Lepeophtheirus salmonis]
Length = 239
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 8/118 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALK 70
+ R++QEH+++F+ED F E +KYGE+E +N+CDNL DH+ FR EE A RA+
Sbjct: 70 VSDREMQEHYDNFFEDCFVEAEDKYGEVEEMNVCDNLGDHLVGNVYIKFRREEDAERAVS 129
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
L+ R++ GRPI + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 130 DLNNRWFGGRPIYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRDLY 187
>gi|126329169|ref|XP_001363961.1| PREDICTED: splicing factor U2AF 26 kDa subunit-like isoform 1
[Monodelphis domestica]
Length = 222
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 104/174 (59%), Gaps = 33/174 (18%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVTELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISRDLRRQL+GR RR
Sbjct: 133 RWFNGQAVQAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLYGRGPRR 192
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
R SP R+ GH R+R SP HR GR
Sbjct: 193 ------RGPSP-------TRAGGGH------------RPRERNRRRSPDHRHGR 221
>gi|29126228|ref|NP_803432.1| splicing factor U2AF 35 kDa subunit [Danio rerio]
gi|21105405|gb|AAM34646.1|AF506202_1 U2 small nuclear RNA auxiliary factor small subunit [Danio rerio]
Length = 249
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 90/121 (74%), Gaps = 8/121 (6%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARA 68
N + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A
Sbjct: 66 NAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 125
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ +L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 126 VINLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
Query: 129 G 129
G
Sbjct: 186 G 186
>gi|219126548|ref|XP_002183517.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405273|gb|EEC45217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 251
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 103/159 (64%), Gaps = 16/159 (10%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
+DPR+ QE F F+EDL+ E +K+G IE +++ DNL DHM F +EEQA+ AL+
Sbjct: 71 VDPRQAQEDFFAFFEDLYVEFSKFGRIEGMHVVDNLGDHMIGHVYVKFADEEQASDALQV 130
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
++GR+Y GRP+I++FSPVTDFREA CR Y+E+ C R GYCNF+H K + R L + L
Sbjct: 131 MNGRYYDGRPMIIEFSPVTDFREARCRDYDEDQCARQGYCNFLHSKPVPRALLQSLEDDC 190
Query: 128 ----FGRYRRRHSRSRSRSRSPYRHRSH-EDRSHSGHGR 161
RR +++ + +R RSH EDRS+ HGR
Sbjct: 191 EADRIAEKERRRRDRKTQKKRKHRDRSHSEDRSYRKHGR 229
>gi|452820320|gb|EME27364.1| splicing factor U2AF 35 kDa subunit [Galdieria sulphuraria]
Length = 285
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 92/124 (74%), Gaps = 7/124 (5%)
Query: 12 VDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQ 64
V A+ + I+ HF+DFYED+++EL+KYGEIE +++C+N+++H+ F++E+
Sbjct: 65 VGAKPPEMSEEDIKYHFDDFYEDVYDELSKYGEIEEMHVCENMSEHLTGNVYIKFKDEDA 124
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A RAL++++GR+YAGR + +FSPVTDFREA CR YE C+RG YCNFMH+KRIS DL
Sbjct: 125 AQRALQAVNGRYYAGRMVHAEFSPVTDFREARCRPYERQLCDRGDYCNFMHIKRISDDLF 184
Query: 125 RQLF 128
LF
Sbjct: 185 NGLF 188
>gi|403348419|gb|EJY73647.1| U2 snRNP auxiliary factor, small subunit, putative [Oxytricha
trifallax]
Length = 386
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 83/124 (66%), Gaps = 7/124 (5%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HFEDF+E++F EL K+GE+E + + DN+ DHM F EEQA A L+GR+YAG
Sbjct: 78 HFEDFFEEVFGELAKFGELEEVIVADNIGDHMIGNVYVKFVTEEQAQSAFNGLNGRYYAG 137
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSR 139
R I+ ++SPVTDFRE+ CRQY E C+RGGYCNFMH K +S+DL+R LF H R
Sbjct: 138 RVILAEYSPVTDFRESKCRQYNEGQCDRGGYCNFMHPKHVSKDLKRALFKSMYDEHPEYR 197
Query: 140 SRSR 143
R
Sbjct: 198 EHRR 201
>gi|332020538|gb|EGI60953.1| Splicing factor U2af 38 kDa subunit [Acromyrmex echinatior]
Length = 240
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 75 EMQEHYDNFFEDVFIECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISRDLRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRDLRRYLY 188
>gi|148677752|gb|EDL09699.1| mCG12604 [Mus musculus]
Length = 212
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 87/115 (75%), Gaps = 8/115 (6%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 44 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAMIDLNN 103
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+G
Sbjct: 104 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 158
>gi|384486958|gb|EIE79138.1| hypothetical protein RO3G_03843 [Rhizopus delemar RA 99-880]
Length = 230
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 85/117 (72%), Gaps = 7/117 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L ++QE F+ FYED+F EL K+GE+E + +CDN+ DH+ FR EE A A++S
Sbjct: 63 LTENQLQEDFDLFYEDVFMELAKFGEVEEMVVCDNVGDHLVGNVYCQFRLEESAGNAVES 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
L+ RFYAGRP+ + SPVTDFREA CRQ+E CNRGG+CNFMHLK +R LR++L+
Sbjct: 123 LNNRFYAGRPLYAELSPVTDFREACCRQHEIAECNRGGFCNFMHLKHPTRALRQELY 179
>gi|348530872|ref|XP_003452934.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Oreochromis
niloticus]
Length = 238
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 90/125 (72%), Gaps = 8/125 (6%)
Query: 12 VDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEE 63
VD + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR+EE
Sbjct: 62 VDGLTCTISDTEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRKEE 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+L
Sbjct: 122 DAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEIGECTRGGFCNFMHLKPISREL 181
Query: 124 RRQLF 128
RR+L+
Sbjct: 182 RRELY 186
>gi|66361760|ref|XP_627402.1| U2AG splicing factor U2AF U2snRNP auxilliary factor small subunit
CCCh+RRM+CCCh-like [Cryptosporidium parvum Iowa II]
gi|46228867|gb|EAK89737.1| U2AG splicing factor U2AF U2snRNP auxilliary factor small subunit
CCCh+RRM+CCCh-like [Cryptosporidium parvum Iowa II]
Length = 256
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 105/200 (52%), Gaps = 41/200 (20%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
E FYE++F+EL+KYGEI L ICDN+ DHM F EE A AL +L G+ YAG+
Sbjct: 86 VEVFYEEMFKELSKYGEILELLICDNIGDHMIGNVYIRFSTEEYAKTALANLRGKMYAGK 145
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
PI ++ SPV+DF+EA CRQY + CNRGGYCNFMH+K + R ++ ++F + H
Sbjct: 146 PINIELSPVSDFKEARCRQYIDGCCNRGGYCNFMHIKHVPRCVKDKIFDQMYSEHPE--- 202
Query: 141 RSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP 200
Y HR + G DD SR R+ +
Sbjct: 203 -----YLHRK---TNSCGKSSARDDGKGSESSRPRKFQ---------------------- 232
Query: 201 VREGSEERRAKIEQWNRERE 220
R+ SEERR IE WN+ RE
Sbjct: 233 -RQSSEERRLMIESWNKRRE 251
>gi|67624011|ref|XP_668288.1| U2 snRNP auxiliary factor, small subunit [Cryptosporidium hominis
TU502]
gi|54659468|gb|EAL38043.1| U2 snRNP auxiliary factor, small subunit [Cryptosporidium hominis]
Length = 247
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 105/200 (52%), Gaps = 41/200 (20%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
E FYE++F+EL+KYGEI L ICDN+ DHM F EE A AL +L G+ YAG+
Sbjct: 79 VEVFYEEIFKELSKYGEILELLICDNIGDHMIGNVYIRFSTEEYAKTALLNLRGKLYAGK 138
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
PI ++ SPV+DF+EA CRQY + CNRGGYCNFMH+K + R ++ ++F + H
Sbjct: 139 PINIELSPVSDFKEARCRQYIDGCCNRGGYCNFMHIKHVPRCVKDKIFDQMYSEHPE--- 195
Query: 141 RSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP 200
Y HR + G DD SR R+ +
Sbjct: 196 -----YLHRK---TNSCGKSSARDDGKGSESSRPRKFQ---------------------- 225
Query: 201 VREGSEERRAKIEQWNRERE 220
R+ SEERR IE WN+ RE
Sbjct: 226 -RQSSEERRLMIESWNKRRE 244
>gi|148223762|ref|NP_001089860.1| U2 small nuclear RNA auxiliary factor 1 [Xenopus laevis]
gi|80477616|gb|AAI08559.1| MGC131026 protein [Xenopus laevis]
Length = 245
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 87/114 (76%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGEIE +N+CDNL DH+ FR EE A +A+K L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVKDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|395752868|ref|XP_002830790.2| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2, partial
[Pongo abelii]
Length = 323
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 156 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 215
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 216 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 269
>gi|237839493|ref|XP_002369044.1| U2 snRNP auxiliary factor small subunit, putative [Toxoplasma
gondii ME49]
gi|211966708|gb|EEB01904.1| U2 snRNP auxiliary factor small subunit, putative [Toxoplasma
gondii ME49]
gi|221483313|gb|EEE21632.1| U2 snRNP auxiliary factor small subunit, putative [Toxoplasma
gondii GT1]
gi|221507801|gb|EEE33388.1| U2 snRNP auxiliary factor small subunit, putative [Toxoplasma
gondii VEG]
Length = 254
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 114/224 (50%), Gaps = 43/224 (19%)
Query: 8 ITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FR 60
I G + LD + +HFE F+ ++FEEL KYGE+E + +CDN+ DH+ +
Sbjct: 61 IAEGQNVSDELLD--QAADHFEAFFSEVFEELAKYGEVEDMVVCDNIGDHIIGNVYVKYT 118
Query: 61 EEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
+EE A +AL +L GRFY+G+ I +F+PVTDFREA CRQ+ + C RGGYCNFMHLK +
Sbjct: 119 DEEAANKALAALQGRFYSGKQIHAEFTPVTDFREARCRQFVDGQCRRGGYCNFMHLKHVP 178
Query: 121 RDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKY---YESRSRRH 177
R L+R+LF + +DD Y RR
Sbjct: 179 RSLKRKLFKKM-------------------------------FDDHPDYGRQRSPGRRRS 207
Query: 178 RSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQ 221
RS S R P R SEERRA I +WN ERE+
Sbjct: 208 RSRQRSSSPRRPTRRRSPSIQRPERRTSEERRAMIAKWNEEREE 251
>gi|328785395|ref|XP_397281.4| PREDICTED: splicing factor U2af 38 kDa subunit [Apis mellifera]
gi|340723033|ref|XP_003399903.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Bombus
terrestris]
gi|350423714|ref|XP_003493568.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Bombus
impatiens]
gi|380029135|ref|XP_003698237.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Apis florea]
gi|383858860|ref|XP_003704917.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Megachile
rotundata]
Length = 241
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|351700683|gb|EHB03602.1| Splicing factor U2AF 35 kDa subunit [Heterocephalus glaber]
Length = 387
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 233 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 292
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 293 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 346
>gi|307202736|gb|EFN82027.1| Splicing factor U2af 38 kDa subunit [Harpegnathos saltator]
Length = 240
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|221056112|ref|XP_002259194.1| U2 snRNP auxiliary factor, small subunit [Plasmodium knowlesi
strain H]
gi|193809265|emb|CAQ39967.1| U2 snRNP auxiliary factor, small subunit,putative [Plasmodium
knowlesi strain H]
Length = 308
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 28/205 (13%)
Query: 39 LNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91
L KYGEIE + +CDN+ DH+ + E+ A +A+K L+GRFYAG+P+ ++++PVTD
Sbjct: 90 LMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVKELNGRFYAGKPLQIEYTPVTD 149
Query: 92 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSH 151
FREA CRQ+ + C RGGYCNFMH+K + R ++R+L+ R ++ + R ++
Sbjct: 150 FREARCRQFVDGQCRRGGYCNFMHIKHVPRSVKRKLYKRMYKKFPEYKKRRKT------- 202
Query: 152 EDRSHSGHGRRYDD--------RDKYYES------RSRRHRSTSPSHRRGRSRSPGGRRY 197
+D S GH + D RDKY +S R+R + RR+
Sbjct: 203 KDGSEDGHYDSHRDRGTRDKHRRDKYGDSYHSSRRRNRSRSRSRNRDDADGDSDGASRRH 262
Query: 198 HSPVREGSEERRAKIEQWNREREQQ 222
P RE S ERR KIE+WN+ERE +
Sbjct: 263 KYPRRENSAERREKIERWNKEREMK 287
>gi|138519996|gb|AAI35291.1| LOC733934 protein [Xenopus (Silurana) tropicalis]
Length = 241
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 87/114 (76%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+K L+
Sbjct: 72 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVKDLNN 131
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 132 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
>gi|71051663|gb|AAH98601.1| U2af1 protein [Danio rerio]
Length = 250
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 90/121 (74%), Gaps = 8/121 (6%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARA 68
N + +++EH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A
Sbjct: 66 NAVSDVEMREHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA 125
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ +L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 126 VINLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
Query: 129 G 129
G
Sbjct: 186 G 186
>gi|355727231|gb|AES09126.1| U2 small nuclear RNA auxiliary factor 1 [Mustela putorius furo]
Length = 133
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 87/115 (75%), Gaps = 8/115 (6%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 6 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 65
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+G
Sbjct: 66 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYG 120
>gi|113931334|ref|NP_001039113.1| U2 small nuclear RNA auxiliary factor 1 [Xenopus (Silurana)
tropicalis]
gi|89268927|emb|CAJ81820.1| U2(RNU2) small nuclear RNA auxiliary factor 1 [Xenopus (Silurana)
tropicalis]
Length = 243
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 87/114 (76%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+K L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVKDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|389583734|dbj|GAB66468.1| U2 snRNP auxiliary factor small subunit, partial [Plasmodium
cynomolgi strain B]
Length = 307
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 116/206 (56%), Gaps = 26/206 (12%)
Query: 39 LNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91
L KYGEIE + +CDN+ DH+ + E+ A +A+K L+GRFYAG+P+ ++++PVTD
Sbjct: 90 LMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVKELNGRFYAGKPLQIEYTPVTD 149
Query: 92 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPY----- 146
FREA CRQ+ + C RGGYCNFMH+K + R ++R+L+ R ++ + R ++
Sbjct: 150 FREARCRQFVDGQCRRGGYCNFMHIKHVPRAVKRKLYKRMYKKFPEYKKRRKTKDGSEDG 209
Query: 147 RHRSHEDRSHSGHGRRYDDRDKYYES----------RSRRHRSTSPSHRRGRSRSPGGRR 196
H SH DR R RDKY +S RSR + RR
Sbjct: 210 HHDSHRDRGSRDKHR----RDKYGDSHHSSRRRNRSRSRSRNRSRNRDDADGDSDGASRR 265
Query: 197 YHSPVREGSEERRAKIEQWNREREQQ 222
+ P RE S ERR KIE+WN+ERE +
Sbjct: 266 HKHPRRENSAERREKIERWNKEREMK 291
>gi|307170197|gb|EFN62583.1| Splicing factor U2af 38 kDa subunit [Camponotus floridanus]
gi|332029584|gb|EGI69473.1| Splicing factor U2af 38 kDa subunit [Acromyrmex echinatior]
Length = 240
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|91089827|ref|XP_969424.1| PREDICTED: similar to AGAP002956-PA [Tribolium castaneum]
Length = 227
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|357618954|gb|EHJ71738.1| putative U2 snrnp auxiliary factor, small subunit [Danaus
plexippus]
Length = 227
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 84/115 (73%), Gaps = 8/115 (6%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 76 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 135
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 136 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYA 190
>gi|307197303|gb|EFN78595.1| Splicing factor U2af 38 kDa subunit [Harpegnathos saltator]
Length = 240
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 75 EMQEHYDNFFEDVFIECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|432849900|ref|XP_004066668.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Oryzias
latipes]
Length = 228
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 89/124 (71%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
DA + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DASRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVMDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLF 128
R+L+
Sbjct: 183 RELY 186
>gi|326432262|gb|EGD77832.1| splicing factor U2af 38 kDa subunit [Salpingoeca sp. ATCC 50818]
Length = 278
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 8/129 (6%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADH-------MFREEEQAAR 67
G + ++QE+F++F+ DLF EL KYG I +N+CDNL DH MF+ EE A +
Sbjct: 67 GCAMTEEELQENFDNFFADLFWELEEKYGPIVDMNVCDNLGDHLVGNVYIMFKNEEDAEK 126
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A++ L+ R+Y G PI+ + SPVTDF+EA CRQYE C RGG+CNFMHLK +S+ +R L
Sbjct: 127 AVEDLNNRWYNGNPIVAELSPVTDFKEACCRQYELGECTRGGFCNFMHLKPLSKSMRDVL 186
Query: 128 FGRYRRRHS 136
FG RR S
Sbjct: 187 FGDRRREVS 195
>gi|301791706|ref|XP_002930821.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Ailuropoda
melanoleuca]
Length = 290
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 123 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 182
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 183 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 236
>gi|71027337|ref|XP_763312.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small subunit
[Theileria parva strain Muguga]
gi|68350265|gb|EAN31029.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Theileria parva]
Length = 235
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 99/189 (52%), Gaps = 54/189 (28%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE + +CDN+ DH+ + +E A RA+ SLSGR+Y GRPI +++PVTDFR
Sbjct: 92 KYGEIEDMIVCDNIGDHIIGNVYIKYSDEAAACRAVTSLSGRYYGGRPIQCEYTPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHED 153
EA CRQ+ E C RGGYCNFMH+K + R LRR+L R +
Sbjct: 152 EARCRQFVEGQCRRGGYCNFMHIKHVPRSLRRKLMTRMYQEFPE---------------- 195
Query: 154 RSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIE 213
Y+ R+ RHRS SP R+ R+ SEERR IE
Sbjct: 196 ----------------YKKRTPRHRSASPYRRK---------------RQTSEERRDMIE 224
Query: 214 QWNREREQQ 222
QWNRERE +
Sbjct: 225 QWNRERESK 233
>gi|307172750|gb|EFN64036.1| Splicing factor U2af 38 kDa subunit [Camponotus floridanus]
gi|307174220|gb|EFN64865.1| Splicing factor U2af 38 kDa subunit [Camponotus floridanus]
Length = 240
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 75 EMQEHYDNFFEDVFIECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|345323475|ref|XP_001511817.2| PREDICTED: hypothetical protein LOC100080963 [Ornithorhynchus
anatinus]
Length = 350
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 175 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 234
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 235 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 288
>gi|380807533|gb|AFE75642.1| splicing factor U2AF 35 kDa subunit isoform b, partial [Macaca
mulatta]
Length = 192
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 37 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 96
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 97 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 150
>gi|426219497|ref|XP_004003958.1| PREDICTED: splicing factor U2AF 35 kDa subunit [Ovis aries]
Length = 332
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 155 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 214
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 215 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 268
>gi|77736499|ref|NP_001029950.1| splicing factor U2AF 26 kDa subunit [Bos taurus]
gi|426242747|ref|XP_004015232.1| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 1 [Ovis
aries]
gi|122146166|sp|Q3T127.1|U2AF4_BOVIN RecName: Full=Splicing factor U2AF 26 kDa subunit; AltName: Full=U2
small nuclear RNA auxiliary factor 1-like protein 4
gi|74354897|gb|AAI02152.1| Transmembrane protein 149 [Bos taurus]
gi|296477857|tpg|DAA19972.1| TPA: splicing factor U2AF 26 kDa subunit [Bos taurus]
gi|440894920|gb|ELR47238.1| Splicing factor U2AF 26 kDa subunit [Bos grunniens mutus]
Length = 220
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISRDLRRQL+
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLY 186
>gi|332263383|ref|XP_003280726.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2 [Nomascus
leucogenys]
gi|332872231|ref|XP_003319153.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 4 [Pan
troglodytes]
gi|397506809|ref|XP_003823909.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 3 [Pan
paniscus]
Length = 202
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 35 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 94
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 95 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 148
>gi|328875135|gb|EGG23500.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 447
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 82/114 (71%), Gaps = 7/114 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+IQ+HF++FYEDL E L+KYG +E +++C NL DH+ + EE A A++ L GR
Sbjct: 90 EIQKHFDEFYEDLHEGLSKYGRVELMHVCANLGDHLIGNVYVKYDTEEAAGAAVEGLRGR 149
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
FY GRPI+ +FSPVTDF E+ CRQ++ TC+RGGYCNFMHL S+ L +LFG
Sbjct: 150 FYDGRPIVAEFSPVTDFNESRCRQFDMGTCDRGGYCNFMHLHLPSKPLSIKLFG 203
>gi|196016447|ref|XP_002118076.1| hypothetical protein TRIADDRAFT_33482 [Trichoplax adhaerens]
gi|190579379|gb|EDV19476.1| hypothetical protein TRIADDRAFT_33482 [Trichoplax adhaerens]
Length = 183
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 8/108 (7%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q+HF+ +YED+F EL KYGEIE +N+CDNL DH+ FR EE A+ A+ SL+ R+
Sbjct: 76 QKHFDHYYEDIFVELEEKYGEIEEMNVCDNLGDHLVGNVYVKFRSEEHASAAVNSLNNRW 135
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
+ G PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR LR
Sbjct: 136 FNGNPIFAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRSLR 183
>gi|432116144|gb|ELK37266.1| Splicing factor U2AF 35 kDa subunit [Myotis davidii]
Length = 244
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 77 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 136
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 137 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 190
>gi|441672642|ref|XP_004092375.1| PREDICTED: splicing factor U2AF 35 kDa subunit [Nomascus
leucogenys]
Length = 213
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 46 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 105
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 106 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 159
>gi|197127859|gb|ACH44357.1| putative U2 snRNP auxiliary factor small subunit variant 1
[Taeniopygia guttata]
gi|197127861|gb|ACH44359.1| putative U2 snRNP auxiliary factor small subunit variant 1
[Taeniopygia guttata]
Length = 237
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLF 128
R+L+
Sbjct: 183 RELY 186
>gi|68800128|ref|NP_001020374.1| splicing factor U2AF 35 kDa subunit isoform b [Homo sapiens]
gi|297287452|ref|XP_002803161.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Macaca mulatta]
gi|332872227|ref|XP_003319151.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2 [Pan
troglodytes]
gi|344294749|ref|XP_003419078.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Loxodonta africana]
gi|359323574|ref|XP_003640135.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2 [Canis
lupus familiaris]
gi|402862238|ref|XP_003895473.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2 [Papio
anubis]
gi|46911414|emb|CAF29556.1| U2 snRNP auxiliary factor small subunit [Homo sapiens]
gi|119629907|gb|EAX09502.1| U2(RNU2) small nuclear RNA auxiliary factor 1, isoform CRA_b [Homo
sapiens]
gi|410206762|gb|JAA00600.1| U2 small nuclear RNA auxiliary factor 1 [Pan troglodytes]
gi|410289262|gb|JAA23231.1| U2 small nuclear RNA auxiliary factor 1 [Pan troglodytes]
Length = 240
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLF 128
R+L+
Sbjct: 183 RELY 186
>gi|327268484|ref|XP_003219027.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Anolis carolinensis]
Length = 242
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLF 128
R+L+
Sbjct: 183 RELY 186
>gi|254939700|ref|NP_001157241.1| splicing factor U2AF 35 kDa subunit isoform 2 [Mus musculus]
gi|348556405|ref|XP_003464013.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Cavia porcellus]
gi|148708397|gb|EDL40344.1| mCG14259, isoform CRA_b [Mus musculus]
gi|149043574|gb|EDL97025.1| rCG60540, isoform CRA_b [Rattus norvegicus]
Length = 239
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLF 128
R+L+
Sbjct: 183 RELY 186
>gi|126325215|ref|XP_001364583.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Monodelphis
domestica]
gi|395518569|ref|XP_003763432.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2
[Sarcophilus harrisii]
Length = 248
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 63 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 123 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 182
Query: 125 RQLF 128
R+L+
Sbjct: 183 RELY 186
>gi|1621615|gb|AAB17271.1| U2 snRNP auxiliary factor [Drosophila melanogaster]
Length = 264
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 86/126 (68%), Gaps = 9/126 (7%)
Query: 11 GVDAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREE 62
G D N D ++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E
Sbjct: 64 GSDLVANVSD-EEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNE 122
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
A +A L+ R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 123 ADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
Query: 123 LRRQLF 128
LRR L+
Sbjct: 183 LRRYLY 188
>gi|449268664|gb|EMC79513.1| Splicing factor U2AF 35 kDa subunit, partial [Columba livia]
Length = 222
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 49 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 108
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 109 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 168
Query: 125 RQLF 128
R+L+
Sbjct: 169 RELY 172
>gi|355560252|gb|EHH16938.1| hypothetical protein EGK_13202, partial [Macaca mulatta]
gi|355747336|gb|EHH51833.1| hypothetical protein EGM_12135, partial [Macaca fascicularis]
Length = 226
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQ 64
D + ++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE
Sbjct: 49 DGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 108
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LR
Sbjct: 109 AEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELR 168
Query: 125 RQLF 128
R+L+
Sbjct: 169 RELY 172
>gi|112983840|ref|NP_001037756.1| uncharacterized protein LOC687575 [Rattus norvegicus]
gi|254939694|ref|NP_077149.2| splicing factor U2AF 35 kDa subunit isoform 1 [Mus musculus]
gi|348556403|ref|XP_003464012.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Cavia porcellus]
gi|17368837|sp|Q9D883.4|U2AF1_MOUSE RecName: Full=Splicing factor U2AF 35 kDa subunit; AltName: Full=U2
auxiliary factor 35 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor small subunit
gi|12849864|dbj|BAB28511.1| unnamed protein product [Mus musculus]
gi|26354106|dbj|BAC40683.1| unnamed protein product [Mus musculus]
gi|74181282|dbj|BAE29923.1| unnamed protein product [Mus musculus]
gi|76779398|gb|AAI05906.1| Similar to Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor
35 kDa subunit) (U2 snRNP auxiliary factor small
subunit) [Rattus norvegicus]
gi|109730851|gb|AAI15480.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Mus
musculus]
gi|109732120|gb|AAI15481.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Mus
musculus]
gi|148708396|gb|EDL40343.1| mCG14259, isoform CRA_a [Mus musculus]
gi|149043573|gb|EDL97024.1| rCG60540, isoform CRA_a [Rattus norvegicus]
Length = 239
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|395518567|ref|XP_003763431.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1
[Sarcophilus harrisii]
Length = 248
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|327268486|ref|XP_003219028.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 3
[Anolis carolinensis]
Length = 236
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|327268482|ref|XP_003219026.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Anolis carolinensis]
Length = 242
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|122692549|ref|NP_001073737.1| splicing factor U2AF 35 kDa subunit [Bos taurus]
gi|122703746|ref|NP_989986.2| splicing factor U2AF 35 kDa subunit [Gallus gallus]
gi|146325808|sp|A1A4K8.1|U2AF1_BOVIN RecName: Full=Splicing factor U2AF 35 kDa subunit; AltName: Full=U2
auxiliary factor 35 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor small subunit
gi|13235096|emb|CAC33541.1| U2snRNP auxiliary factor small subunit [Gallus gallus]
gi|13235098|emb|CAC33542.1| U2snRNP auxiliary factor small subunit [Gallus gallus]
gi|13235100|emb|CAC33543.1| U2snRNP auxiliary factor small subunit [Gallus gallus]
gi|119223947|gb|AAI26639.1| U2 small nuclear RNA auxiliary factor 1 [Bos taurus]
gi|296490881|tpg|DAA32994.1| TPA: splicing factor U2AF 35 kDa subunit [Bos taurus]
Length = 237
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|5803207|ref|NP_006749.1| splicing factor U2AF 35 kDa subunit isoform a [Homo sapiens]
gi|297287450|ref|XP_001118538.2| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Macaca mulatta]
gi|332872225|ref|XP_001137466.2| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1 [Pan
troglodytes]
gi|344294747|ref|XP_003419077.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Loxodonta africana]
gi|359323572|ref|XP_003640134.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1 [Canis
lupus familiaris]
gi|402862236|ref|XP_003895472.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1 [Papio
anubis]
gi|410060371|ref|XP_003949235.1| PREDICTED: splicing factor U2AF 35 kDa subunit [Pan troglodytes]
gi|267187|sp|Q01081.3|U2AF1_HUMAN RecName: Full=Splicing factor U2AF 35 kDa subunit; AltName: Full=U2
auxiliary factor 35 kDa subunit; AltName: Full=U2 small
nuclear RNA auxiliary factor 1; AltName: Full=U2 snRNP
auxiliary factor small subunit
gi|338263|gb|AAA36619.1| U2 snRNP auxiliary factor small subunit [Homo sapiens]
gi|7768747|dbj|BAA95534.1| U2 snRNP auxiliary factor small subunit [Homo sapiens]
gi|12654677|gb|AAH01177.1| U2 small nuclear RNA auxiliary factor 1 [Homo sapiens]
gi|12804941|gb|AAH01923.1| U2 small nuclear RNA auxiliary factor 1 [Homo sapiens]
gi|119629911|gb|EAX09506.1| U2(RNU2) small nuclear RNA auxiliary factor 1, isoform CRA_d [Homo
sapiens]
gi|261861084|dbj|BAI47064.1| U2 small nuclear RNA auxiliary factor 1 [synthetic construct]
gi|410206760|gb|JAA00599.1| U2 small nuclear RNA auxiliary factor 1 [Pan troglodytes]
gi|410289260|gb|JAA23230.1| U2 small nuclear RNA auxiliary factor 1 [Pan troglodytes]
gi|410331625|gb|JAA34759.1| U2 small nuclear RNA auxiliary factor 1 [Pan troglodytes]
Length = 240
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|354484665|ref|XP_003504507.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Cricetulus
griseus]
Length = 238
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 72 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 131
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 132 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
>gi|12805423|gb|AAH02184.1| U2af1 protein, partial [Mus musculus]
Length = 238
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 72 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 131
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 132 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 185
>gi|440895568|gb|ELR47720.1| Splicing factor U2AF 35 kDa subunit, partial [Bos grunniens mutus]
Length = 223
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 59 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 118
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 119 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 172
>gi|431901449|gb|ELK08471.1| Splicing factor U2AF 35 kDa subunit, partial [Pteropus alecto]
Length = 226
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 59 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 118
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 119 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 172
>gi|428672035|gb|EKX72950.1| U2 snrnp auxiliary factor, small subunit, putative [Babesia equi]
Length = 243
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 101/190 (53%), Gaps = 52/190 (27%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE + +CDN+ DH+ + +E A+RA+ SLSGR+Y GRPI +++PVTDFR
Sbjct: 92 KYGEIEDMVVCDNIGDHIIGNVYVKYSDESAASRAVTSLSGRYYGGRPIQAEYTPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRS-RSPYRHRSHE 152
EA CRQ+ + C RGGYCNFMH+K I R LRR+L R + + RS RS Y
Sbjct: 152 EARCRQFVDGQCRRGGYCNFMHIKHIPRSLRRKLMKRMYEEYPEYKKRSPRSSY------ 205
Query: 153 DRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKI 212
R+RS SP H P R+ SEERR I
Sbjct: 206 -----------------------RNRSGSP---------------HRPKRQTSEERRDMI 227
Query: 213 EQWNREREQQ 222
QWNRERE +
Sbjct: 228 AQWNREREDK 237
>gi|326913392|ref|XP_003203022.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Meleagris
gallopavo]
Length = 243
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 79 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 138
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 139 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 192
>gi|301771073|ref|XP_002920964.1| PREDICTED: splicing factor U2AF 26 kDa subunit-like [Ailuropoda
melanoleuca]
gi|338709979|ref|XP_003362292.1| PREDICTED: splicing factor U2AF 26 kDa subunit-like isoform 2
[Equus caballus]
Length = 220
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLY 186
>gi|223646964|gb|ACN10240.1| Splicing factor U2AF 35 kDa subunit [Salmo salar]
gi|223672827|gb|ACN12595.1| Splicing factor U2AF 35 kDa subunit [Salmo salar]
Length = 227
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVMDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREAYCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>gi|380793475|gb|AFE68613.1| splicing factor U2AF 35 kDa subunit isoform a, partial [Macaca
mulatta]
Length = 155
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 8/113 (7%)
Query: 24 IQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+ R
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 113
>gi|311257402|ref|XP_003127103.1| PREDICTED: splicing factor U2AF 26 kDa subunit-like isoform 1 [Sus
scrofa]
Length = 220
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLY 186
>gi|432095948|gb|ELK26863.1| Splicing factor U2AF 35 kDa subunit [Myotis davidii]
Length = 248
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 84/113 (74%), Gaps = 8/113 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDAFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRREL 185
>gi|444514071|gb|ELV10521.1| Splicing factor U2AF 35 kDa subunit [Tupaia chinensis]
Length = 229
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 84/113 (74%), Gaps = 8/113 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++Q+H+ +F++++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQQHYHEFFQEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVVDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
R++ GRPI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L
Sbjct: 133 RWFHGRPIYAELSPVTDFREACCRQYETGECARGGFCNFMHLKPISRELRREL 185
>gi|68800138|ref|NP_001020375.1| splicing factor U2AF 35 kDa subunit isoform c [Homo sapiens]
gi|194226294|ref|XP_001490926.2| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 1
[Equus caballus]
gi|332263381|ref|XP_003280725.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1 [Nomascus
leucogenys]
gi|332872229|ref|XP_003319152.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 3 [Pan
troglodytes]
gi|338720813|ref|XP_003364254.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like isoform 2
[Equus caballus]
gi|345795464|ref|XP_535599.3| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 4 [Canis
lupus familiaris]
gi|359323577|ref|XP_003640136.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 3 [Canis
lupus familiaris]
gi|397506805|ref|XP_003823907.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1 [Pan
paniscus]
gi|397506807|ref|XP_003823908.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2 [Pan
paniscus]
gi|403271413|ref|XP_003927619.1| PREDICTED: splicing factor U2AF 35 kDa subunit [Saimiri boliviensis
boliviensis]
gi|410969865|ref|XP_003991412.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 1 [Felis
catus]
gi|410969867|ref|XP_003991413.1| PREDICTED: splicing factor U2AF 35 kDa subunit isoform 2 [Felis
catus]
gi|441672637|ref|XP_004092374.1| PREDICTED: splicing factor U2AF 35 kDa subunit [Nomascus
leucogenys]
gi|33341702|gb|AAQ15222.1|AF370386_1 FP793 [Homo sapiens]
gi|119629906|gb|EAX09501.1| U2(RNU2) small nuclear RNA auxiliary factor 1, isoform CRA_a [Homo
sapiens]
gi|119629909|gb|EAX09504.1| U2(RNU2) small nuclear RNA auxiliary factor 1, isoform CRA_a [Homo
sapiens]
gi|119629910|gb|EAX09505.1| U2(RNU2) small nuclear RNA auxiliary factor 1, isoform CRA_a [Homo
sapiens]
Length = 167
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 8/113 (7%)
Query: 24 IQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+ R
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 113
>gi|426378574|ref|XP_004055992.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like, partial
[Gorilla gorilla gorilla]
Length = 193
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 88/121 (72%), Gaps = 8/121 (6%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGE+E +N+CDNL DH+ EE A +A+ L+
Sbjct: 71 EMQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREEDAEKAVIDLNN 130
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+PI + SPVTDFR A CRQYE C RGG+CNFMHLK ISR+LRR+L G+ R++
Sbjct: 131 RWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELRRELCGQRRKK 190
Query: 135 H 135
H
Sbjct: 191 H 191
>gi|223646168|gb|ACN09842.1| Splicing factor U2AF 35 kDa subunit [Salmo salar]
gi|223672015|gb|ACN12189.1| Splicing factor U2AF 35 kDa subunit [Salmo salar]
Length = 244
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVMDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+P+ + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR L+
Sbjct: 133 RWFNGQPVHSELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRDLY 186
>gi|403223158|dbj|BAM41289.1| U2 snRNP auxiliary factor [Theileria orientalis strain Shintoku]
Length = 242
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 100/198 (50%), Gaps = 68/198 (34%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE + +CDN+ DH+ + +E A RA+ SLSGR+Y GRPI +++PVTDFR
Sbjct: 92 KYGEIEDMVVCDNIGDHIIGNVYIKYTDESAACRAVTSLSGRYYGGRPIQCEYTPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-------FGRYRRRHSRS--RSRSRS 144
EA CRQ+ E C RGGYCNFMH+K + R LRR+L F Y+RR R R+RSRS
Sbjct: 152 EARCRQFVEGQCRRGGYCNFMHIKHVPRSLRRKLMKRMYEEFPEYKRRSPRGSHRNRSRS 211
Query: 145 PYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREG 204
P R P R+
Sbjct: 212 PQR----------------------------------------------------PKRQT 219
Query: 205 SEERRAKIEQWNREREQQ 222
SEERR IEQWNRERE +
Sbjct: 220 SEERRDMIEQWNREREAK 237
>gi|427787701|gb|JAA59302.1| Putative u2 small nuclear riboprotein auxiliary factor 38
[Rhipicephalus pulchellus]
Length = 253
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 86/127 (67%), Gaps = 21/127 (16%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEHF++F+ED+F EL +KYGEIE +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 74 EMQEHFDNFFEDVFVELEDKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVADLNN 133
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENT-------------CNRGGYCNFMHLKRISR 121
R++AG PI + SPVTDFREA CRQYE C R G+CNFMHLK ISR
Sbjct: 134 RWFAGHPIYSELSPVTDFREACCRQYEMGLKAKTWRSTAATEECTRSGFCNFMHLKPISR 193
Query: 122 DLRRQLF 128
+LRR+L+
Sbjct: 194 ELRRELY 200
>gi|17137284|ref|NP_477208.1| U2 small nuclear riboprotein auxiliary factor 38, isoform A
[Drosophila melanogaster]
gi|442624928|ref|NP_001259814.1| U2 small nuclear riboprotein auxiliary factor 38, isoform B
[Drosophila melanogaster]
gi|14286185|sp|Q94535.2|U2AF1_DROME RecName: Full=Splicing factor U2af 38 kDa subunit; AltName: Full=U2
auxiliary factor 38 kDa subunit; AltName: Full=U2 snRNP
auxiliary factor small subunit
gi|7296221|gb|AAF51512.1| U2 small nuclear riboprotein auxiliary factor 38, isoform A
[Drosophila melanogaster]
gi|16197991|gb|AAL13766.1| LD24048p [Drosophila melanogaster]
gi|220947574|gb|ACL86330.1| U2af38-PA [synthetic construct]
gi|440213060|gb|AGB92351.1| U2 small nuclear riboprotein auxiliary factor 38, isoform B
[Drosophila melanogaster]
Length = 264
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|195470226|ref|XP_002087409.1| GE16227 [Drosophila yakuba]
gi|194173510|gb|EDW87121.1| GE16227 [Drosophila yakuba]
Length = 267
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|195350065|ref|XP_002041562.1| GM16679 [Drosophila sechellia]
gi|195575511|ref|XP_002077621.1| GD22967 [Drosophila simulans]
gi|194123335|gb|EDW45378.1| GM16679 [Drosophila sechellia]
gi|194189630|gb|EDX03206.1| GD22967 [Drosophila simulans]
Length = 263
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|194853379|ref|XP_001968154.1| GG24659 [Drosophila erecta]
gi|190660021|gb|EDV57213.1| GG24659 [Drosophila erecta]
Length = 266
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>gi|422294712|gb|EKU22012.1| splicing factor U2AF 35 kDa subunit, partial [Nannochloropsis
gaditana CCMP526]
Length = 313
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 82/107 (76%), Gaps = 7/107 (6%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
FEDF+E+++EEL K+GE+E +++CDNL +HM + +EE+A A ++L+GRFYAGR
Sbjct: 151 FEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGR 210
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
+ V+FSPVTDFREA CRQY+E C G YCNF+H+K ISR LRR L
Sbjct: 211 VLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDL 257
>gi|241556280|ref|XP_002399674.1| U2 snRNP splicing factor, small subunit, putative [Ixodes
scapularis]
gi|215499705|gb|EEC09199.1| U2 snRNP splicing factor, small subunit, putative [Ixodes
scapularis]
Length = 256
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 86/127 (67%), Gaps = 21/127 (16%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEHF++F+ED+F EL +KYGEIE +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 74 EMQEHFDNFFEDVFVELEDKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVADLNN 133
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENT-------------CNRGGYCNFMHLKRISR 121
R++AG PI + SPVTDFREA CRQYE C R G+CNFMHLK ISR
Sbjct: 134 RWFAGHPIYSELSPVTDFREACCRQYEMGLKAKTWRTTEASEECTRSGFCNFMHLKPISR 193
Query: 122 DLRRQLF 128
+LRR+L+
Sbjct: 194 ELRRELY 200
>gi|197692189|dbj|BAG70058.1| U2 small nuclear RNA auxillary factor 1 isoform a [Homo sapiens]
Length = 240
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHL+ ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLEPISRELRRELY 186
>gi|355755732|gb|EHH59479.1| U2 auxiliary factor 26 [Macaca fascicularis]
Length = 220
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 104/174 (59%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F+E++F EL KYGEIE +N+CD+L DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDSFFEEVFTELQEKYGEIEEMNMCDDLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L RQL+G+ RR
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLWRQLYGQGPRR 192
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
RSP R H+ H R +R + SP HR GR
Sbjct: 193 --------RSP-------PRFHTSHCPREGNRRR------------SPDHRHGR 219
>gi|403331231|gb|EJY64551.1| U2 splicing factor subunit, putative [Oxytricha trifallax]
Length = 452
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 53/250 (21%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HFE FYE++F EL KYGE+E ++ICDN+ +H+ F +E A +A++ L+GR+YAG
Sbjct: 65 HFESFYEEVFLELAKYGEVEEMHICDNIGEHLLGNVYCKFIQELDADKAMRGLNGRYYAG 124
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR----DLRRQLFGRYRRRH 135
+ I V+FSPVTDF E+ CR Y E C+RGGYCNFMHLK +++ D++ ++ +
Sbjct: 125 KQIKVEFSPVTDFNESRCRLYVEGQCDRGGYCNFMHLKHMTKEFQHDMKCLMYSEFPEYK 184
Query: 136 SRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHR----------------- 178
+ R R +++S E S+ + + K S+ R+ +
Sbjct: 185 AHRDQRKRVAKQNKSIEPESNKSISKSRSPQPKRSRSKDRKQKRRYNRKSSQSSSRSKSR 244
Query: 179 --STSPSHRRGRSRSPGGRRYHSPV----------------------REGSEERRAKIEQ 214
+TS SH + R R R++H RE S+ERRA I
Sbjct: 245 NSTTSRSHSQDR-RHKSKRKHHRYSRSRSRNERRARNSRKDSRVNLGRETSKERRAIIAA 303
Query: 215 WNREREQQEE 224
WN E + +++
Sbjct: 304 WNDENDDKKQ 313
>gi|348683758|gb|EGZ23573.1| hypothetical protein PHYSODRAFT_370516 [Phytophthora sojae]
Length = 203
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 100/136 (73%), Gaps = 11/136 (8%)
Query: 1 MYQRLDMITPGVDAQGNP--LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM 58
MYQ + I + G+P LD R + E FEDFYE++FEEL K+G++E LNICDNL DH+
Sbjct: 50 MYQ--NPIAQVIAQNGDPASLDQRHVDEEFEDFYEEVFEELCKFGKLEELNICDNLGDHL 107
Query: 59 -------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 111
+ +EE AA A K+L GRFYAGRP++ +FSPVTDFREA CRQ++E TCNRGGYC
Sbjct: 108 VGNVYAKYEDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYC 167
Query: 112 NFMHLKRISRDLRRQL 127
NFMH+K + R ++R+L
Sbjct: 168 NFMHIKTVPRSMQREL 183
>gi|85000529|ref|XP_954983.1| U2 snRNP auxiliary factor [Theileria annulata strain Ankara]
gi|65303129|emb|CAI75507.1| U2 snRNP auxiliary factor, putative [Theileria annulata]
Length = 236
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 98/189 (51%), Gaps = 54/189 (28%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE + +CDN+ DH+ + +E A RA+ SLSGR+Y GRPI +++PVTDFR
Sbjct: 92 KYGEIEDMVVCDNIGDHIIGNVYIKYSDESAACRAVTSLSGRYYGGRPIQCEYTPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHED 153
EA CRQ+ E C RGGYCNFMH+K + R LRR+L R + + R PY
Sbjct: 152 EARCRQFVEGQCRRGGYCNFMHIKHVPRSLRRKLMTRMYQEF--PEYKKRIPY------- 202
Query: 154 RSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIE 213
HRS SP R+ R+ SEERR IE
Sbjct: 203 -----------------------HRSGSPYKRK---------------RQTSEERRDMIE 224
Query: 214 QWNREREQQ 222
QWNRERE +
Sbjct: 225 QWNRERESK 233
>gi|312381446|gb|EFR27193.1| hypothetical protein AND_06248 [Anopheles darlingi]
Length = 372
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA K L+
Sbjct: 192 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAAKDLNN 251
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 252 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 299
>gi|239790945|dbj|BAH72001.1| ACYPI001339 [Acyrthosiphon pisum]
Length = 214
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 80/110 (72%), Gaps = 8/110 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A A+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEHAEAAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LR
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELR 184
>gi|340377156|ref|XP_003387096.1| PREDICTED: splicing factor U2AF 35 kDa subunit-like [Amphimedon
queenslandica]
Length = 227
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 8/118 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALK 70
+ P Q H+E+F+ED+F E KYG IE +N+CDNL DH+ FR EE A +A++
Sbjct: 68 VSPEVEQAHYEEFFEDVFIECEEKYGPIEKMNVCDNLGDHLVGNVYIKFRFEEDAEKAVQ 127
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
SL+ R++ G PI + SPVTDF+EA CRQY+ C RGG+CNFMHLK ISR+L+R L+
Sbjct: 128 SLNNRWFNGHPIHAELSPVTDFKEACCRQYDMGECTRGGFCNFMHLKPISRELKRFLY 185
>gi|449303843|gb|EMC99850.1| hypothetical protein BAUCODRAFT_352847 [Baudoinia compniacensis
UAMH 10762]
Length = 210
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 13/149 (8%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + +D ++Q HF+ FYED++ E+NKYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDTRARSMDASQLQNHFDAFYEDIWCEMNKYGELEELVVCDNNNDHLIGNVYARFKYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A A ++L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 115 ESAQAASEALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSEE 174
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
+ R L + R R R ++S SRS SP
Sbjct: 175 MDRSLELATKKWLRARGRDAKSMSRSPSP 203
>gi|449682646|ref|XP_002156010.2| PREDICTED: splicing factor U2AF 26 kDa subunit-like [Hydra
magnipapillata]
Length = 190
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 8/107 (7%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
QEH+++F+ED+F EL KYGEIE +N+CDNL DH+ FR EE A +A+ +++ R+
Sbjct: 29 QEHYDNFFEDVFLELEAKYGEIEEMNVCDNLGDHLVGNVYVKFRFEEDAEKAVDNVNNRW 88
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
Y G+PI + SPVTDFRE+ CRQYE C RGG+CNFMHLK ISR+L
Sbjct: 89 YNGQPIYAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPISREL 135
>gi|395751008|ref|XP_003780722.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 26 kDa subunit
[Pongo abelii]
Length = 179
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGE E +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 32 EVQEHYDNFFEEVFTELQEKYGEXEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 91
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++LRRQL+
Sbjct: 92 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLRRQLY 145
>gi|224011894|ref|XP_002294600.1| U2 SnRNP auxillary factor, splicing factor [Thalassiosira
pseudonana CCMP1335]
gi|220969620|gb|EED87960.1| U2 SnRNP auxillary factor, splicing factor [Thalassiosira
pseudonana CCMP1335]
Length = 197
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 7/130 (5%)
Query: 5 LDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM------ 58
L + G G +D + +E F F+ED FEEL+K+G +E+L+ICDNL DHM
Sbjct: 61 LKAASEGRAVDGIEVDEAEAREDFLVFFEDFFEELSKFGRLEALHICDNLGDHMVGHVYA 120
Query: 59 -FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK 117
F +EE+AA AL ++GRFY GR + V+FSPVTDFREA CR ++E TC RGG+CNF+H+K
Sbjct: 121 KFSDEEEAADALNVMNGRFYDGRKMEVEFSPVTDFREARCRDFDEETCRRGGFCNFLHIK 180
Query: 118 RISRDLRRQL 127
+ L R +
Sbjct: 181 PVPMCLIRDM 190
>gi|31455228|gb|AAH05915.1| U2 small nuclear RNA auxiliary factor 1 [Homo sapiens]
gi|312151474|gb|ADQ32249.1| U2 small nuclear RNA auxiliary factor 1 [synthetic construct]
Length = 167
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 84/113 (74%), Gaps = 8/113 (7%)
Query: 24 IQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+QEH+++F+E++F E+ KY E+E +N+CDNL DH+ FR EE A +A+ L+ R
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYREVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 113
>gi|170063641|ref|XP_001867190.1| splicing factor U2af 38 kDa subunit [Culex quinquefasciatus]
gi|167881198|gb|EDS44581.1| splicing factor U2af 38 kDa subunit [Culex quinquefasciatus]
Length = 249
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA K L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAAKDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|157114089|ref|XP_001657976.1| U2 snrnp auxiliary factor, small subunit [Aedes aegypti]
gi|108877446|gb|EAT41671.1| AAEL006713-PA [Aedes aegypti]
Length = 246
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA K L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAAKDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|118781916|ref|XP_311943.3| AGAP002956-PA [Anopheles gambiae str. PEST]
gi|116129321|gb|EAA08115.3| AGAP002956-PA [Anopheles gambiae str. PEST]
Length = 251
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA K L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAAKDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|170035423|ref|XP_001845569.1| splicing factor U2af 38 kDa subunit [Culex quinquefasciatus]
gi|167877385|gb|EDS40768.1| splicing factor U2af 38 kDa subunit [Culex quinquefasciatus]
Length = 217
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A RA K L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAERAAKDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|440802051|gb|ELR22990.1| zinc finger domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 294
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 85/133 (63%), Gaps = 21/133 (15%)
Query: 7 MITPGVDAQGNPLDPRKIQ----------EHFEDFYEDLFEELNKYGEIESLNICDNLAD 56
M P V A+ P P +Q EHF DF+ED+ +EL +G +E L++CDN +
Sbjct: 23 MYMPPVPAEW-PTSPDDVQAMQKIQRDAEEHFNDFFEDIHDELRNFGRLEDLHVCDNTGE 81
Query: 57 HMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
+A+K+L+GRFY GR ++ +FSPVTDFREA CRQY+ N CNRGG CNFMHL
Sbjct: 82 ----------KAMKALTGRFYGGRLLVPEFSPVTDFREARCRQYDSNECNRGGQCNFMHL 131
Query: 117 KRISRDLRRQLFG 129
K++ +L R+LFG
Sbjct: 132 KQVDPELERRLFG 144
>gi|160358766|sp|Q8WU68.2|U2AF4_HUMAN RecName: Full=Splicing factor U2AF 26 kDa subunit; AltName: Full=U2
auxiliary factor 26; AltName: Full=U2 small nuclear RNA
auxiliary factor 1-like protein 4; AltName:
Full=U2(RNU2) small nuclear RNA auxiliary factor 1-like
protein 3; Short=U2 small nuclear RNA auxiliary factor
1-like protein 3; Short=U2AF1-like protein 3
Length = 220
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 97/147 (65%), Gaps = 8/147 (5%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F+E++F EL KYGEIE +N+CDNL DH+ FR EE RA+ LS
Sbjct: 73 EVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+GR RR
Sbjct: 133 RWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRR 192
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGR 161
S R + R R+H HGR
Sbjct: 193 RSPPRFHTGHHPRERNHRCSPDHWHGR 219
>gi|343424964|emb|CBQ68501.1| related to splicing factor U2AF 35 kd subunit [Sporisorium
reilianum SRZ2]
Length = 282
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 82/120 (68%), Gaps = 7/120 (5%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
Q + ++Q F+ FYED+F EL +YG++ +++CDN+ DH+ +R E A R
Sbjct: 60 QDCTITDTELQAQFDTFYEDMFVELAQYGQLVEMHVCDNVGDHLIGNVYARYRYEADAQR 119
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A+ +L+ R+Y G+P+ + SPVTDF+EA CRQ E N CNRGG+CNFMHL+ SR +R+QL
Sbjct: 120 AVDALNDRWYDGKPLFAELSPVTDFQEACCRQNETNECNRGGFCNFMHLRYASRPIRKQL 179
>gi|242014352|ref|XP_002427855.1| Splicing factor U2Af 38 kDa subunit, putative [Pediculus humanus
corporis]
gi|212512324|gb|EEB15117.1| Splicing factor U2Af 38 kDa subunit, putative [Pediculus humanus
corporis]
Length = 253
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|169778681|ref|XP_001823805.1| splicing factor U2AF subunit [Aspergillus oryzae RIB40]
gi|238499237|ref|XP_002380853.1| U2 auxiliary factor small subunit, putative [Aspergillus flavus
NRRL3357]
gi|83772544|dbj|BAE62672.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692606|gb|EED48952.1| U2 auxiliary factor small subunit, putative [Aspergillus flavus
NRRL3357]
gi|391870811|gb|EIT79981.1| U2 snRNP splicing factor, small subunit [Aspergillus oryzae 3.042]
Length = 209
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED++ E+ KYGEIE L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPK-NKMNPSQLQNHFDAFYEDVWCEMCKYGEIEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R +RS SRS SP
Sbjct: 165 IHRKDPSNELDRELRLSTKKWLKERGRDARSVSRSPSP 202
>gi|355703446|gb|EHH29937.1| U2 auxiliary factor 26 [Macaca mulatta]
Length = 220
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F+E++F EL KYGEIE +N+CD+L DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDSFFEEVFTELQEKYGEIEEMNMCDDLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++LRRQ++
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLRRQVY 186
>gi|409080647|gb|EKM81007.1| hypothetical protein AGABI1DRAFT_71717 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197561|gb|EKV47488.1| hypothetical protein AGABI2DRAFT_221673 [Agaricus bisporus var.
bisporus H97]
Length = 227
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 30/177 (16%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ S
Sbjct: 63 LTEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDS 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S DL +QL
Sbjct: 123 CNERWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRNASPDLVKQL---- 178
Query: 132 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
RH + R P +H+ G G +E S+R+RS SP RRGR
Sbjct: 179 --RHGQRLERKLHPPQHQ-------GGGG---------WEP-SKRNRSASPPSRRGR 216
>gi|296415596|ref|XP_002837472.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633344|emb|CAZ81663.1| unnamed protein product [Tuber melanosporum]
Length = 212
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED F E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 55 PAFDPK-NKMNTSQLQNHFDAFYEDFFCEMCKYGEVEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S+D
Sbjct: 114 EDAQTACDALNARWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSKD 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + R R R RS SRS SP
Sbjct: 174 LERELELGMKKWLRARGRDRRSVSRSVSP 202
>gi|171695120|ref|XP_001912484.1| hypothetical protein [Podospora anserina S mat+]
gi|170947802|emb|CAP59965.1| unnamed protein product [Podospora anserina S mat+]
Length = 208
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 9/150 (6%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ E+ KYGEIE L +CDN DH+ F+ E
Sbjct: 55 PAFDPK-NRMNPSQLQNHFDAFYEDIWCEMCKYGEIEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSPE 173
Query: 123 LRRQLFGRYRRRHSRSRSRSRSPYRHRSHE 152
L R+L ++ ++R RSRSP R S E
Sbjct: 174 LEREL-ELSTKKWLKTRPRSRSPTRSPSPE 202
>gi|402224397|gb|EJU04460.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 272
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 96/163 (58%), Gaps = 27/163 (16%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++Q++F+ YEDL+ EL+K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LSSQELQDNFDQLYEDLYIELSKFGHLLELHVCDNIGDHLIGNVYARYEWEAEAQAAVDA 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL--FG 129
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGGYCNFMHL+ S+DL + L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGYCNFMHLRIASKDLVKSLEVSQ 182
Query: 130 RYRRRH------------------SRSRSRSRSPYRHRSHEDR 154
R RR + R+RSRSP R EDR
Sbjct: 183 RLERRMQGKENSNAGAGAGWQPPSASKRARSRSPARGGEGEDR 225
>gi|324521720|gb|ADY47915.1| Splicing factor U2AF 35 kDa subunit [Ascaris suum]
Length = 253
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K L R+
Sbjct: 94 QAYFDEFYEEVFTELERKYGEIDEMNVCENIGEHMIGNVYVKFMREEDAEKAVKDLENRW 153
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
+ G+PI V+ SPVTDFRE+ CRQ+E TC +GG+CNFMHLK IS L +LFGR
Sbjct: 154 FNGQPIYVELSPVTDFRESRCRQHEITTCCKGGFCNFMHLKAISPALGEKLFGR 207
>gi|70952191|ref|XP_745280.1| U2 snRNP auxiliary factor, small subunit [Plasmodium chabaudi
chabaudi]
gi|56525554|emb|CAH89145.1| U2 snRNP auxiliary factor, small subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 299
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 128/241 (53%), Gaps = 20/241 (8%)
Query: 14 AQGNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESL-NICDNLADHMFRE-------- 61
A+G +D + + HFE+FYE++F+EL K EIE +CDN DH + +
Sbjct: 62 AEGQMVDDEVLDQAADHFEEFYEEVFDELMK-XEIEDXGXVCDN-GDHXYWKCLXLNIHX 119
Query: 62 EEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+ A +A+K L+GRFYAG+P+ ++++PVTDFREA CRQ+ + C RGGYCNFMH+K + R
Sbjct: 120 EDYAEKAIKELNGRFYAGKPLQIEYTPVTDFREARCRQFVDGQCRRGGYCNFMHIKHVPR 179
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTS 181
++R+L R ++ + +S R D R R Y S R
Sbjct: 180 TVKRRLHKRMYKKFPMYKKNRKS----RDDSDGERRHDRYRDRSRRDKYGSSYNSSRRRH 235
Query: 182 PSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINN 241
S + R + P RE S ERR KIE+WN+ERE + + N D + + N
Sbjct: 236 RSQSSNGNDDDNERSHKHPRRENSSERREKIERWNKEREMKNN--QKNNDENEDTTKVEN 293
Query: 242 D 242
D
Sbjct: 294 D 294
>gi|324504738|gb|ADY42042.1| Splicing factor U2AF 35 kDa subunit [Ascaris suum]
Length = 255
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 87/119 (73%), Gaps = 9/119 (7%)
Query: 20 DPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKS 71
DP + Q++F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K
Sbjct: 88 DPEE-QKYFDEFYEEVFTELERKYGEIDEMNVCENIGEHMIGNVYVKFVREEDAEKAVKD 146
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
L R++ G+PI + SPVTDFREA CRQ+E TC++GG+CNFMHLK IS +L +L+GR
Sbjct: 147 LQNRWFNGQPIYAELSPVTDFREARCRQHEVTTCSKGGFCNFMHLKAISPELGDRLYGR 205
>gi|320590311|gb|EFX02754.1| u2 auxiliary factor small [Grosmannia clavigera kw1407]
Length = 208
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 88/142 (61%), Gaps = 13/142 (9%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
N ++ ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ EE AA A
Sbjct: 60 NGMNASQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLVGNVYARFKYEESAASAC 119
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-- 127
+L+GR+YA RPI + SPVTDFREA CR C RGGYCNF+H K S +L +L
Sbjct: 120 DALNGRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGYCNFIHRKNPSEELDNELQL 179
Query: 128 ----FGRYRRRHSRSRSRSRSP 145
+ + R R RS SRS SP
Sbjct: 180 ATKKWLKLRGRDERSVSRSPSP 201
>gi|312066026|ref|XP_003136074.1| hypothetical protein LOAG_00486 [Loa loa]
Length = 346
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K L R+
Sbjct: 192 QAYFDEFYEEVFTELERKYGEIDEMNVCENIGEHMIGNVYVKFMREEDAEKAVKDLENRW 251
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
+ G+PI + SPVTDFRE+ CRQ+E TC +GG+CNFMHLK IS +L +LFGR
Sbjct: 252 FNGQPIYAELSPVTDFRESRCRQHEVTTCYKGGFCNFMHLKAISPELGEKLFGR 305
>gi|118399961|ref|XP_001032304.1| zinc finger protein [Tetrahymena thermophila]
gi|89286644|gb|EAR84641.1| zinc finger protein [Tetrahymena thermophila SB210]
Length = 389
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 137/286 (47%), Gaps = 41/286 (14%)
Query: 1 MYQRLDMITPGVDAQGNPL---DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH 57
MYQ + T AQGN + + +K H+E+FYE++F EL YGEI+ L ICDN+ DH
Sbjct: 110 MYQ--NSPTELALAQGNRVSEEEAQKALNHYEEFYEEVFLELASYGEIDDLIICDNIGDH 167
Query: 58 M-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 110
M + E +A + L SL R+Y + + +FSPVTDF A C+QY E C R GY
Sbjct: 168 MKGNVYVKYVRESEALKCLMSLKTRYYDKQQLQPEFSPVTDFSNAKCKQYIEGQCKRSGY 227
Query: 111 CNFMHLKRISRDLRRQLFGRYRRRH----------------SRSRSRSRSPYRHRSHEDR 154
CN++H K I R RR LF + H RS+ + + R HE
Sbjct: 228 CNYIHSKPIGRPFRRSLFRQMYEEHPEYKNRSRSRSRSDDDERSKKKRKDKERSEKHEKD 287
Query: 155 SHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQ 214
S H R K+ + + ++ + + + +S SPG + SEERRA I +
Sbjct: 288 SKKKHSRSRSSHKKHKKDKDKKKKKSRSHSKHSKSASPGYK--------NSEERRADIAK 339
Query: 215 WNREREQQEEAYKGNTDGGNNDQGINNDGLMQNGN---GYHSYKQQ 257
W E + EE K N G N+ G ++ + N G H Y Q
Sbjct: 340 WGEEDD--EEDMKVNASGSVNNNGTTSNNEQSDSNNKQGTHDYLAQ 383
>gi|193613212|ref|XP_001950331.1| PREDICTED: splicing factor U2af 38 kDa subunit-like isoform 1
[Acyrthosiphon pisum]
Length = 249
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 96/168 (57%), Gaps = 35/168 (20%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR EE A A+ L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRREEHAEAAVNDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LR+ L+ R RR
Sbjct: 135 RWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRKYLYSRRSRR 194
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSP 182
H H G +RR RS SP
Sbjct: 195 HRSRSRSR------------DHVG---------------TRRTRSPSP 215
>gi|324522962|gb|ADY48164.1| Splicing factor U2AF 26 kDa subunit, partial [Ascaris suum]
Length = 303
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 86/127 (67%), Gaps = 8/127 (6%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q F++FY ++F E++ +YG IE +N+CDN+ +HM FR E A RA+ SL+ R+
Sbjct: 72 QREFDEFYREVFVEIDDEYGRIEEMNVCDNVGEHMLGNVYVKFRHESSAERAVNSLNERW 131
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHS 136
+ GRPI + SPV DFR+A CRQYE CNRGG+CNFMHLK++S L+R+L R R+
Sbjct: 132 FDGRPIHCELSPVVDFRDACCRQYEIGECNRGGFCNFMHLKKVSSGLKRKLLRRSERQKR 191
Query: 137 RSRSRSR 143
R ++ R
Sbjct: 192 RKCTKWR 198
>gi|195155565|ref|XP_002018674.1| GL25824 [Drosophila persimilis]
gi|194114827|gb|EDW36870.1| GL25824 [Drosophila persimilis]
Length = 309
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|322707016|gb|EFY98595.1| splicing factor U2AF 23 kDa subunit, putative [Metarhizium
anisopliae ARSEF 23]
Length = 208
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 91/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 ESAQKACDELNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R RS SRS +P
Sbjct: 174 LDRDLTLSTKKWLKLRGRDERSMSRSPTP 202
>gi|332262088|ref|XP_003280097.1| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 2 [Nomascus
leucogenys]
Length = 181
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 89/139 (64%), Gaps = 8/139 (5%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ LS R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELSNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRS 142
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++LRRQL+G RR S R +
Sbjct: 102 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLRRQLYGWGPRRRSPPRFHT 161
Query: 143 RSPYRHRSHEDRSHSGHGR 161
R R+ S HGR
Sbjct: 162 GHRPRERNRRHSSDHQHGR 180
>gi|400602483|gb|EJP70085.1| splicing factor U2AF 23 kDa subunit [Beauveria bassiana ARSEF 2860]
Length = 211
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 92/150 (61%), Gaps = 14/150 (9%)
Query: 10 PGVDAQG-NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FRE 61
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+
Sbjct: 55 PAYDQKNTNRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKY 114
Query: 62 EEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+ A +A L+GR+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S
Sbjct: 115 EDAAQKACDELNGRWYAGRPIYCELSPVTDFREACCRLNSGEGCMRGGFCNFIHRKNPSD 174
Query: 122 DLRRQL------FGRYRRRHSRSRSRSRSP 145
+L R L + R R R +S SRS +P
Sbjct: 175 ELDRDLTLSTKKWLRARGRDEKSVSRSPTP 204
>gi|170595997|ref|XP_001902599.1| U2 small nuclear RNA auxiliary factor small subunit [Brugia malayi]
gi|158589634|gb|EDP28552.1| U2 small nuclear RNA auxiliary factor small subunit, putative
[Brugia malayi]
Length = 248
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 25 QEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K L R+
Sbjct: 94 QAYFDEFYEEVFTELEKKYGEIDEMNVCENIGEHMIGNVYVKFLREEDAEKAVKDLENRW 153
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
+ G+PI + SPVTDFRE+ CRQ+E TC +GG+CNFMHLK IS +L +LFGR
Sbjct: 154 FNGQPIYAELSPVTDFRESRCRQHEVTTCYKGGFCNFMHLKAISPELGERLFGR 207
>gi|402592968|gb|EJW86895.1| U2 snRNP splicing factor small subunit [Wuchereria bancrofti]
Length = 248
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 25 QEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K L R+
Sbjct: 94 QAYFDEFYEEVFTELEKKYGEIDEMNVCENIGEHMIGNVYVKFLREEDAEKAVKDLENRW 153
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
+ G+PI + SPVTDFRE+ CRQ+E TC +GG+CNFMHLK IS +L +LFGR
Sbjct: 154 FNGQPIYAELSPVTDFRESRCRQHEVTTCYKGGFCNFMHLKAISPELGERLFGR 207
>gi|320163034|gb|EFW39933.1| U2(RNU2) small nuclear RNA auxiliary factor 1 [Capsaspora
owczarzaki ATCC 30864]
Length = 211
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 88/129 (68%), Gaps = 11/129 (8%)
Query: 12 VDAQGNPLDPRKI---QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FR 60
+ + P+DP + Q+HF++FYED+F E+ KYG +E +N+CDNL++H+ FR
Sbjct: 60 ANPESGPIDPETMLASQDHFDEFYEDVFTEMEEKYGAVEEMNVCDNLSEHLVGNTYVKFR 119
Query: 61 EEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
EE A RA + L+ R++ GR + + S VTDF EA CRQY+ C GG+CNFMH+K IS
Sbjct: 120 REEDAERAAEDLNNRWFDGRVVSAELSTVTDFNEACCRQYDIGQCKFGGFCNFMHIKPIS 179
Query: 121 RDLRRQLFG 129
++LRR+++G
Sbjct: 180 KELRREIYG 188
>gi|313227857|emb|CBY23006.1| unnamed protein product [Oikopleura dioica]
Length = 240
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 8/126 (6%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQ 64
D G + +Q+H+++FYE++F E+ +KYGEIE +N+C+NL DH+ F EE
Sbjct: 64 DDSGQQITETMLQQHYDEFYEEVFFEIEDKYGEIEEMNVCENLGDHLVGNVYIKFYREED 123
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
+A + ++ R++ +PI+ + SPVT+FREA CR YE C RGG+CNFMHLK IS+DLR
Sbjct: 124 CEKAAEGVNDRWFGMQPIVGELSPVTNFREACCRDYEMGECTRGGFCNFMHLKPISKDLR 183
Query: 125 RQLFGR 130
++L+ +
Sbjct: 184 KKLYAK 189
>gi|225581058|gb|ACN94635.1| GA17536 [Drosophila miranda]
Length = 290
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|198476714|ref|XP_001357453.2| GA17536 [Drosophila pseudoobscura pseudoobscura]
gi|198137818|gb|EAL34522.2| GA17536 [Drosophila pseudoobscura pseudoobscura]
Length = 289
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|425770129|gb|EKV08603.1| U2 auxiliary factor small subunit, putative [Penicillium digitatum
Pd1]
gi|425771678|gb|EKV10115.1| U2 auxiliary factor small subunit, putative [Penicillium digitatum
PHI26]
Length = 209
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED++ E+ KYGE+E L ICDN DH+
Sbjct: 51 MYQ-----NPAYDPK-NKMNPSQMQNHFDAFYEDVWCEMCKYGELEELVICDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYGRFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R RS SRS SP
Sbjct: 165 IHRKDPSSELDRELRLSTKKWLKERGRDPRSASRSPSP 202
>gi|19115857|ref|NP_594945.1| U2AF small subunit, U2AF-23 [Schizosaccharomyces pombe 972h-]
gi|6136086|sp|Q09176.2|U2AF1_SCHPO RecName: Full=Splicing factor U2AF 23 kDa subunit; AltName: Full=U2
auxiliary factor 23 kDa subunit; Short=U2AF23; AltName:
Full=U2 snRNP auxiliary factor small subunit
gi|2347143|gb|AAC49805.1| spU2AF23 [Schizosaccharomyces pombe]
gi|5834791|emb|CAB55173.1| U2AF small subunit, U2AF-23 [Schizosaccharomyces pombe]
Length = 216
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P + G R++ E F+ FYED+F E +KYGE+E L +CDN+ DH+ F+ E
Sbjct: 55 PIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A A+ L+ R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG CNFMH K+ S
Sbjct: 115 ESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQ 174
Query: 123 LRRQLFGRYRR 133
L R L R+
Sbjct: 175 LLRDLVLAQRK 185
>gi|71019619|ref|XP_760040.1| hypothetical protein UM03893.1 [Ustilago maydis 521]
gi|46099833|gb|EAK85066.1| hypothetical protein UM03893.1 [Ustilago maydis 521]
Length = 279
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 87/140 (62%), Gaps = 11/140 (7%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
Q + ++Q F+ FYED+F EL KYG++ +++CDN+ DH+ ++ E A R
Sbjct: 60 QDCTITDTELQAQFDAFYEDMFTELAKYGQLVEMHVCDNVGDHLIGNVYARYKYEADAQR 119
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR-- 125
A+ +L+ R+Y +P+ + SPVTDF+EA CRQ E N CNRGG+CNFMHL+ SR +R+
Sbjct: 120 AVDALNDRWYDAKPLFAELSPVTDFQEACCRQNETNECNRGGFCNFMHLRYASRPIRKEL 179
Query: 126 --QLFGRYRRRHSRSRSRSR 143
QL RRR R ++
Sbjct: 180 NHQLAVELRRRKEEGRDTAK 199
>gi|195035315|ref|XP_001989123.1| GH10217 [Drosophila grimshawi]
gi|193905123|gb|EDW03990.1| GH10217 [Drosophila grimshawi]
Length = 273
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|322701010|gb|EFY92761.1| splicing factor U2AF 23 kDa subunit, putative [Metarhizium acridum
CQMa 102]
Length = 208
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 91/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDELNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R RS SRS +P
Sbjct: 174 LDRDLTLSTKKWLKLRGRDERSMSRSPTP 202
>gi|194766557|ref|XP_001965391.1| GF24893 [Drosophila ananassae]
gi|190618001|gb|EDV33525.1| GF24893 [Drosophila ananassae]
Length = 267
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|195114476|ref|XP_002001793.1| GI15018 [Drosophila mojavensis]
gi|193912368|gb|EDW11235.1| GI15018 [Drosophila mojavensis]
Length = 274
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|443897457|dbj|GAC74797.1| U2 snRNP splicing factor, small subunit, and related proteins
[Pseudozyma antarctica T-34]
Length = 271
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 7/120 (5%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
Q + ++Q F++FYED+F EL KYGE++ +++CDN+ DH+ ++ E A
Sbjct: 60 QDCAITDAELQAQFDEFYEDMFCELAKYGELQEMHVCDNVGDHLIGNVYARYKYEADAQL 119
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A+ +L+ R+Y +P+ + SPVTDF+EA CRQ E N CNRGG+CNFMHL+ S LR+QL
Sbjct: 120 AVDALNDRWYDAKPLFAELSPVTDFQEACCRQNETNECNRGGFCNFMHLRYASAPLRKQL 179
>gi|339238205|ref|XP_003380657.1| conserved hypothetical protein [Trichinella spiralis]
gi|316976430|gb|EFV59727.1| conserved hypothetical protein [Trichinella spiralis]
Length = 254
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 78/104 (75%), Gaps = 8/104 (7%)
Query: 25 QEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q+HF++F+E++F+E+ +KYGEIE +N+CDN+ +HM F+ EE A RA+K L+ R+
Sbjct: 100 QQHFDEFFEEIFDEVEDKYGEIEEMNVCDNIGEHMIGNVYIKFKREEDAERAVKDLNTRW 159
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
+ G PI + SPVTDFREA CRQYE C +GG+CNFMHLK IS
Sbjct: 160 FGGMPIYAELSPVTDFREACCRQYEMGDCGKGGFCNFMHLKPIS 203
>gi|255941442|ref|XP_002561490.1| Pc16g11900 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586113|emb|CAP93860.1| Pc16g11900 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 209
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED++ E+ KYGE+E L ICDN DH+
Sbjct: 51 MYQ-----NPAYDPK-NKMNPSQMQNHFDAFYEDVWCEMCKYGELEELVICDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYGRFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R RS SRS SP
Sbjct: 165 IHRKDPSPELDRELRLSTKKWLKERGRDPRSASRSPSP 202
>gi|300176329|emb|CBK23640.2| unnamed protein product [Blastocystis hominis]
Length = 343
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 85/118 (72%), Gaps = 8/118 (6%)
Query: 28 FEDFYEDLFEELNK-YGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
F++FYE++++EL++ YG IE L++CDNL DHM F +EE A +ALK L+ R+YAG
Sbjct: 75 FDEFYEEVYQELSQSYGPIEELHVCDNLNDHMIGNVYVKFEDEEDAEKALKGLTHRYYAG 134
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSR 137
RP+ ++SPVTDFREA CRQ+EE C RGGYCNFMHL S+ + + F + R ++R
Sbjct: 135 RPLAPEYSPVTDFREARCRQHEEGQCTRGGYCNFMHLMTPSQPVFYRCFPKGRWGYTR 192
>gi|119188829|ref|XP_001245021.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392867930|gb|EAS33646.2| splicing factor U2AF 35 kDa subunit [Coccidioides immitis RS]
Length = 209
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED + E+ KYGE+E + +CDN DH+
Sbjct: 51 MYQ-----NPAFDPK-NKMNPSQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ E+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEDSAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R L + + R R RS SRS SP
Sbjct: 165 IHRKEPSAELERDLELSTKKWLKLRGRDERSVSRSPSP 202
>gi|340924092|gb|EGS18995.1| putative splicing factor [Chaetomium thermophilum var. thermophilum
DSM 1495]
Length = 209
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 95/154 (61%), Gaps = 14/154 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
++ +++Q HF+ FYED++ E+ KYGE+E L +CDN DH+ F+ EE AA+A +
Sbjct: 63 MNEQQLQNHFDAFYEDIWCEMCKYGELEELVVCDNNNDHLIGNVYARFKYEEDAAKACED 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
L+ R+YA RP+ + SPVTDFREA CR C RGG+CNF+H K S +L R+L
Sbjct: 123 LNSRWYAARPVYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSPELEREL-QLA 181
Query: 132 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDD 165
++ + + RSRSP R S E R RRY D
Sbjct: 182 TKKWLKMKPRSRSPTRSPSPEPR------RRYRD 209
>gi|346324452|gb|EGX94049.1| splicing factor U2AF 35 kDa subunit [Cordyceps militaris CM01]
Length = 211
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 14/150 (9%)
Query: 10 PGVDAQG-NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FRE 61
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+
Sbjct: 55 PAYDQKNVNRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKY 114
Query: 62 EEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+ + +A L+GR+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S
Sbjct: 115 EDASQKACDELNGRWYAGRPIYCELSPVTDFREACCRLNSGEGCMRGGFCNFIHRKNPSD 174
Query: 122 DLRRQL------FGRYRRRHSRSRSRSRSP 145
+L R L + R R R +S SRS +P
Sbjct: 175 ELDRDLTLSTKKWLRSRGRDEKSVSRSPTP 204
>gi|195434328|ref|XP_002065155.1| GK14823 [Drosophila willistoni]
gi|194161240|gb|EDW76141.1| GK14823 [Drosophila willistoni]
Length = 287
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|195386376|ref|XP_002051880.1| GJ17240 [Drosophila virilis]
gi|194148337|gb|EDW64035.1| GJ17240 [Drosophila virilis]
Length = 267
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 8/108 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRE 182
>gi|70986128|ref|XP_748561.1| U2 auxiliary factor small subunit [Aspergillus fumigatus Af293]
gi|66846190|gb|EAL86523.1| U2 auxiliary factor small subunit, putative [Aspergillus fumigatus
Af293]
gi|159128305|gb|EDP53420.1| U2 auxiliary factor small subunit, putative [Aspergillus fumigatus
A1163]
Length = 209
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPK-NKMNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R RS SRS SP
Sbjct: 165 IHRKDPSPELDRELRLSTKKWLKERGRDPRSASRSPSP 202
>gi|388580357|gb|EIM20672.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 216
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 7/118 (5%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
N LD R IQ F+ F+EDLF EL K+G + +++CDN+ DH+ + E +A A+
Sbjct: 62 NKLDQRGIQVDFDMFFEDLFMELCKFGNLLEMHVCDNVGDHLIGNVYARYEWETEAQAAV 121
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ + CNRGG+CNFMHLKR +R L R L
Sbjct: 122 DKLNERWYAGRPLHCELSPVTDFREACCRQNDTGDCNRGGFCNFMHLKRPTRSLIRDL 179
>gi|429851228|gb|ELA26437.1| u2 auxiliary factor small [Colletotrichum gloeosporioides Nara gc5]
Length = 208
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 92/155 (59%), Gaps = 14/155 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S D
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSED 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSPYRHRSH 151
L R L + + R R RS SRS +P R H
Sbjct: 174 LDRDLTLSTKKWLKDRGRDERSPSRSPTPEPTRRH 208
>gi|119474039|ref|XP_001258895.1| U2 auxiliary factor small subunit, putative [Neosartorya fischeri
NRRL 181]
gi|119407048|gb|EAW16998.1| U2 auxiliary factor small subunit, putative [Neosartorya fischeri
NRRL 181]
Length = 209
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPK-NKMNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R RS SRS SP
Sbjct: 165 IHRKDPSPELDRELRLSTKKWLKERGRDPRSASRSPSP 202
>gi|389624797|ref|XP_003710052.1| splicing factor U2AF 23 kDa subunit [Magnaporthe oryzae 70-15]
gi|351649581|gb|EHA57440.1| splicing factor U2AF 23 kDa subunit [Magnaporthe oryzae 70-15]
gi|440473536|gb|ELQ42326.1| splicing factor U2AF 23 kDa subunit [Magnaporthe oryzae Y34]
gi|440483649|gb|ELQ63999.1| splicing factor U2AF 23 kDa subunit [Magnaporthe oryzae P131]
Length = 209
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++ ++Q HF+ FYEDL+ EL KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPKNN-MNASQLQNHFDAFYEDLWCELCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ E+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEDSAQKACDELNSRWYAARPIYCELSPVTDFREACCRLNSGEGCTRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R RS SRS +P
Sbjct: 165 IHRKNPSEELDRELVLATKKWLKMRGRDERSVSRSPTP 202
>gi|67904750|ref|XP_682631.1| hypothetical protein AN9362.2 [Aspergillus nidulans FGSC A4]
gi|40747273|gb|EAA66429.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259488204|tpe|CBF87476.1| TPA: U2 auxiliary factor small subunit, putative (AFU_orthologue;
AFUA_3G02380) [Aspergillus nidulans FGSC A4]
Length = 209
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPKSK-MNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R +RS SRS SP
Sbjct: 165 IHRKDPSSELDRELRLSTKKWLKERGRDARSVSRSPSP 202
>gi|212526104|ref|XP_002143209.1| U2 auxiliary factor small subunit, putative [Talaromyces marneffei
ATCC 18224]
gi|242780019|ref|XP_002479507.1| U2 auxiliary factor small subunit, putative [Talaromyces stipitatus
ATCC 10500]
gi|210072607|gb|EEA26694.1| U2 auxiliary factor small subunit, putative [Talaromyces marneffei
ATCC 18224]
gi|218719654|gb|EED19073.1| U2 auxiliary factor small subunit, putative [Talaromyces stipitatus
ATCC 10500]
Length = 209
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P +IQ HF+ FYED++ E+ KYGEIE + +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNPSQIQNHFDAFYEDIWCEMCKYGEIEEIVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A A +L+ R+YA RP+ + SPVTDFREA CR C RGG+CNF+H K + +
Sbjct: 114 DSAQAACDALNSRWYAARPVYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPTPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L+R+L + + R R RS SRS SP
Sbjct: 174 LQRELDLATKKWLKERGRDERSVSRSPSP 202
>gi|388858152|emb|CCF48220.1| related to splicing factor U2AF 35 kd subunit [Ustilago hordei]
Length = 284
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 85/131 (64%), Gaps = 11/131 (8%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++Q+ F+ FYED+F EL KYGE+ +++CDN+ DH+ ++ E A A+ +L+ R
Sbjct: 68 ELQQQFDAFYEDMFTELAKYGELVEMHVCDNVGDHLIGNVYARYKYETDAQLAVDALNDR 127
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS----RDLRRQLFGRY 131
+Y G+P+ + SPVTDF+EA CRQ E N CNRGG+CNFMHL+ S ++L QL
Sbjct: 128 WYDGKPLFAELSPVTDFQEACCRQNETNECNRGGFCNFMHLRYASAPTRKELNHQLAVEL 187
Query: 132 RRRHSRSRSRS 142
R+R RS +
Sbjct: 188 RKRKEEGRSTA 198
>gi|93003154|tpd|FAA00160.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 218
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 11/130 (8%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYG IE +N+CDNL DH+ F +EE A +A+ L+ R++ G+PI+ + S VTDFR
Sbjct: 93 KYGSIEEMNVCDNLGDHLVGNVYIKFHKEEDAEKAVNDLNNRWFNGQPIMSELSTVTDFR 152
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHED 153
EA CRQYE C RGG+CNFMHLK ISR+LRR+L+G R+ + RSRS P R+R
Sbjct: 153 EACCRQYEMGECTRGGFCNFMHLKPISRELRRRLYG---RKEKKKRSRS-PPTRNRRGGS 208
Query: 154 RSHSGHGRRY 163
R G RR+
Sbjct: 209 RERHGRDRRH 218
>gi|403293028|ref|XP_003937526.1| PREDICTED: splicing factor U2AF 26 kDa subunit [Saimiri boliviensis
boliviensis]
Length = 268
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++Q+H++ F+E++F EL KYGEIE +N+ DNL +H+ FR EE A RA+ L
Sbjct: 121 ELQQHYDSFFEEVFTELQEKYGEIEEMNVYDNLRNHLVGNIYVKFRREEDAERAVAELHN 180
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + SPVTDF E+ C QYE C +GG+CNFMHL+ ISR+LR+QL+GR
Sbjct: 181 RWFNGQGVHAKLSPVTDFWESCCHQYEMGECTQGGFCNFMHLRPISRNLRQQLYGR---- 236
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
R RSP RSH+GH R +R+ ++ SP HR GR
Sbjct: 237 ----GPRCRSP-------PRSHTGH--RPRERNCWH----------SPDHRHGR 267
>gi|121712082|ref|XP_001273656.1| U2 auxiliary factor small subunit, putative [Aspergillus clavatus
NRRL 1]
gi|119401808|gb|EAW12230.1| U2 auxiliary factor small subunit, putative [Aspergillus clavatus
NRRL 1]
Length = 209
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPKSK-MNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R +RS SRS SP
Sbjct: 165 IHRKDPSAELDRELRLSTKKWLKERGRDARSVSRSPSP 202
>gi|358377722|gb|EHK15405.1| hypothetical protein TRIVIDRAFT_74630 [Trichoderma virens Gv29-8]
Length = 209
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A+ A ++L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSASAACEALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSDE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS +P
Sbjct: 174 LDRELTLSTKKWLKMRGRDERSVSRSPTP 202
>gi|397490405|ref|XP_003816195.1| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 2 [Pan
paniscus]
Length = 181
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 96/166 (57%), Gaps = 35/166 (21%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRS 142
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+GR R
Sbjct: 102 HGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGR--------GPRH 153
Query: 143 RSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
RSP R H+GH R R HR SP HR GR
Sbjct: 154 RSP-------PRFHTGH-----------HPRERNHR-CSPDHRHGR 180
>gi|115401000|ref|XP_001216088.1| splicing factor U2AF 23 kDa subunit [Aspergillus terreus NIH2624]
gi|114190029|gb|EAU31729.1| splicing factor U2AF 23 kDa subunit [Aspergillus terreus NIH2624]
Length = 209
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPKSK-MNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R +RS SRS SP
Sbjct: 165 IHRKDPSPELDRELRLSTKKWLKERGRDARSVSRSPSP 202
>gi|345565480|gb|EGX48429.1| hypothetical protein AOL_s00080g58 [Arthrobotrys oligospora ATCC
24927]
Length = 210
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED++ E+ KYGEIE L +CDN DH+
Sbjct: 51 MYQ-----NPAFDPK-NKMNPNQLQTHFDGFYEDIWCEMCKYGEIEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKFEEDAQKACDELNQRWYAARPIYCELSPVTDFREACCRLNSGEGCQRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K ++++ R L + R R + R +RS SP
Sbjct: 165 IHRKEPTKEMDRDLELSTKKWLRIRGKDEREATRSPSP 202
>gi|392593590|gb|EIW82915.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 231
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 78/116 (67%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ F E +A A+ +
Sbjct: 63 LTEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARFEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S DL R L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASADLVRSL 178
>gi|303323541|ref|XP_003071762.1| splicing factor U2AF 23 kDa subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240111464|gb|EER29617.1| splicing factor U2AF 23 kDa subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320035093|gb|EFW17035.1| splicing factor U2AF 35 kDa subunit [Coccidioides posadasii str.
Silveira]
Length = 209
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++P ++Q HF+ FYED + E+ KYGE+E + +CDN DH+
Sbjct: 51 MYQ-----NPAFDPK-NKMNPSQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ E+ A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEDSAQNACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R L + + R R RS SRS SP
Sbjct: 165 IHRKEPSAELERDLELSTKKWLKLRGRDERSVSRSPSP 202
>gi|310790801|gb|EFQ26334.1| hypothetical protein GLRG_01478 [Glomerella graminicola M1.001]
Length = 209
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S D
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSED 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R RS SRS +P
Sbjct: 174 LDRDLTLSTKKWLKERGRDERSPSRSPTP 202
>gi|145228481|ref|XP_001388549.1| splicing factor U2AF subunit [Aspergillus niger CBS 513.88]
gi|134054638|emb|CAK43483.1| unnamed protein product [Aspergillus niger]
gi|350637745|gb|EHA26101.1| hypothetical protein ASPNIDRAFT_55496 [Aspergillus niger ATCC 1015]
Length = 209
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPKSK-MNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R L + + R R +RS SRS SP
Sbjct: 165 IHRKDPSNELDRDLRLSTKKWLKERGRDARSVSRSPSP 202
>gi|46124965|ref|XP_387036.1| hypothetical protein FG06860.1 [Gibberella zeae PH-1]
gi|408388308|gb|EKJ67994.1| hypothetical protein FPSE_11805 [Fusarium pseudograminearum CS3096]
Length = 209
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 ESAQKACDELNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R RS SRS +P
Sbjct: 174 LDRDLTLSTKKWLKQRGRDERSASRSPTP 202
>gi|326477662|gb|EGE01672.1| splicing factor U2AF 35 kDa subunit [Trichophyton equinum CBS
127.97]
Length = 169
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 13/142 (9%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
N ++P ++Q HF+ FYED + E+ KYGEIE + +C+N DH+ F+ E+ A +A
Sbjct: 21 NKMNPSQLQNHFDAFYEDFWCEMCKYGEIEEVVVCENNNDHLIGNVYARFKYEDSAQKAC 80
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-- 127
+L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +L R+L
Sbjct: 81 DALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSEELDRELEL 140
Query: 128 ----FGRYRRRHSRSRSRSRSP 145
+ R R R RS +RS SP
Sbjct: 141 STKKWLRLRGRDERSVTRSPSP 162
>gi|296810970|ref|XP_002845823.1| splicing factor U2AF subunit [Arthroderma otae CBS 113480]
gi|238843211|gb|EEQ32873.1| splicing factor U2AF subunit [Arthroderma otae CBS 113480]
Length = 209
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D++ N ++P ++Q HF+ FYED + E+ KYGEIE + +C+N DH+ F+ E
Sbjct: 55 PQYDSK-NKMNPSQLQNHFDAFYEDFWCEMCKYGEIEEVVVCENNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + R R R RS +RS SP
Sbjct: 174 LDRELDLSTKKWLRLRGRDERSMTRSPSP 202
>gi|169613392|ref|XP_001800113.1| hypothetical protein SNOG_09827 [Phaeosphaeria nodorum SN15]
gi|111061972|gb|EAT83092.1| hypothetical protein SNOG_09827 [Phaeosphaeria nodorum SN15]
Length = 210
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P+++Q HF+ FYED++ EL +YG +E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNPQQMQMHFDAFYEDIWCELCQYGLVEELVVCDNNNDHLIGNVYVRFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E + +A +L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 EDSQKACDALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSAE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS +P
Sbjct: 174 LDRELDMCTRKWLKERGRDERSMSRSPTP 202
>gi|452983858|gb|EME83616.1| hypothetical protein MYCFIDRAFT_85447 [Pseudocercospora fijiensis
CIRAD86]
Length = 209
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 13/140 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
++P+++Q HF+ FYED + E+ K+GEIE + +CDN DH+ F+ EE A +A +
Sbjct: 63 MNPQQLQNHFDAFYEDFWCEMCKFGEIEEVVVCDNNNDHLIGNVYARFKYEESAQKACDA 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +L R+L
Sbjct: 123 LNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPELERELELAT 182
Query: 128 --FGRYRRRHSRSRSRSRSP 145
+ R R R RS +RS SP
Sbjct: 183 KKWLRERGRDPRSVTRSPSP 202
>gi|380493273|emb|CCF34000.1| hypothetical protein CH063_06082 [Colletotrichum higginsianum]
Length = 209
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S D
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSED 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R RS SRS +P
Sbjct: 174 LDRDLTLSTKKWLKDRGRDERSPSRSPTP 202
>gi|12842455|dbj|BAB25609.1| unnamed protein product [Mus musculus]
Length = 239
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 78/106 (73%), Gaps = 8/106 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK IS
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPIS 178
>gi|261196914|ref|XP_002624860.1| splicing factor U2AF 35 kDa subunit [Ajellomyces dermatitidis
SLH14081]
gi|225562652|gb|EEH10931.1| splicing factor U2AF 23 kDa subunit [Ajellomyces capsulatus G186AR]
gi|239596105|gb|EEQ78686.1| splicing factor U2AF 35 kDa subunit [Ajellomyces dermatitidis
SLH14081]
gi|239609690|gb|EEQ86677.1| splicing factor U2AF 35 kDa subunit [Ajellomyces dermatitidis ER-3]
gi|240279459|gb|EER42964.1| splicing factor U2AF 23 kDa subunit [Ajellomyces capsulatus H143]
gi|325092588|gb|EGC45898.1| splicing factor U2AF 23 kDa subunit [Ajellomyces capsulatus H88]
gi|327355349|gb|EGE84206.1| splicing factor U2AF 35 kDa subunit [Ajellomyces dermatitidis ATCC
18188]
Length = 209
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 55 PAYDTK-NKMNPSQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQQACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS +RS SP
Sbjct: 174 LERELELSTKKWLKMRGRDERSVTRSPSP 202
>gi|341886073|gb|EGT42008.1| CBN-UAF-2 protein [Caenorhabditis brenneri]
Length = 278
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%), Gaps = 8/118 (6%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F+DFYE++F E+ KYGE+E +N+C+N+ +HM F +EE A +A L+ R+
Sbjct: 84 QRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRW 143
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
+ G+PI + PVTDFRE+ CRQ+E TC++GG+CNFMHLK IS +L +L+GR RR
Sbjct: 144 FNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISSELGDRLYGRRGRR 201
>gi|268534530|ref|XP_002632396.1| C. briggsae CBR-UAF-2 protein [Caenorhabditis briggsae]
Length = 281
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%), Gaps = 8/118 (6%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F+DFYE++F E+ KYGE+E +N+C+N+ +HM F +EE A +A L+ R+
Sbjct: 84 QRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRW 143
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
+ G+PI + PVTDFRE+ CRQ+E TC++GG+CNFMHLK IS +L +L+GR RR
Sbjct: 144 FNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISAELGDRLYGRRGRR 201
>gi|308482690|ref|XP_003103548.1| CRE-UAF-2 protein [Caenorhabditis remanei]
gi|308259969|gb|EFP03922.1| CRE-UAF-2 protein [Caenorhabditis remanei]
Length = 287
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%), Gaps = 8/118 (6%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F+DFYE++F E+ KYGE+E +N+C+N+ +HM F +EE A +A L+ R+
Sbjct: 84 QRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRW 143
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
+ G+PI + PVTDFRE+ CRQ+E TC++GG+CNFMHLK IS +L +L+GR RR
Sbjct: 144 FNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISAELGDRLYGRRGRR 201
>gi|198430519|ref|XP_002128159.1| PREDICTED: zinc finger (C-x8-C-x5-C-x3-H)-16 [Ciona intestinalis]
Length = 187
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 11/130 (8%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYG IE +N+CDNL DH+ F +EE A +A+ L+ R++ G+PI+ + S VTDFR
Sbjct: 62 KYGSIEEMNVCDNLGDHLVGNVYIKFHKEEDAEKAVNDLNNRWFNGQPIMSELSTVTDFR 121
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHED 153
EA CRQYE C RGG+CNFMHLK ISR+LRR+L+G R+ + RSRS P R+R
Sbjct: 122 EACCRQYEMGECTRGGFCNFMHLKPISRELRRRLYG---RKEKKKRSRS-PPTRNRRGGS 177
Query: 154 RSHSGHGRRY 163
R G RR+
Sbjct: 178 RERHGRDRRH 187
>gi|17544466|ref|NP_503036.1| Protein UAF-2 [Caenorhabditis elegans]
gi|5832799|emb|CAB55137.1| Protein UAF-2 [Caenorhabditis elegans]
Length = 285
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 84/118 (71%), Gaps = 8/118 (6%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F+DFYE++F E+ KYGE+E +N+C+N+ +HM F +EE A +A L+ R+
Sbjct: 84 QRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRW 143
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
+ G+PI + PVTDFRE+ CRQ+E TC++GG+CNFMHLK IS +L +L+GR RR
Sbjct: 144 FNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMHLKAISAELGDRLYGRRGRR 201
>gi|389741909|gb|EIM83097.1| splicing factor U2AF subunit [Stereum hirsutum FP-91666 SS1]
Length = 230
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 80/116 (68%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L P+++Q+ F+ YEDL+ EL+K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LTPKELQDGFDAVYEDLYCELSKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVSSL 178
>gi|315051764|ref|XP_003175256.1| splicing factor U2AF subunit [Arthroderma gypseum CBS 118893]
gi|327296385|ref|XP_003232887.1| splicing factor U2AF subunit [Trichophyton rubrum CBS 118892]
gi|311340571|gb|EFQ99773.1| splicing factor U2AF subunit [Arthroderma gypseum CBS 118893]
gi|326465198|gb|EGD90651.1| splicing factor U2AF 35 kDa subunit [Trichophyton rubrum CBS
118892]
gi|326473197|gb|EGD97206.1| splicing factor U2AF 35 kDa subunit [Trichophyton tonsurans CBS
112818]
Length = 209
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 13/142 (9%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
N ++P ++Q HF+ FYED + E+ KYGEIE + +C+N DH+ F+ E+ A +A
Sbjct: 61 NKMNPSQLQNHFDAFYEDFWCEMCKYGEIEEVVVCENNNDHLIGNVYARFKYEDSAQKAC 120
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-- 127
+L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +L R+L
Sbjct: 121 DALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSEELDRELEL 180
Query: 128 ----FGRYRRRHSRSRSRSRSP 145
+ R R R RS +RS SP
Sbjct: 181 STKKWLRLRGRDERSVTRSPSP 202
>gi|114676803|ref|XP_001160959.1| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 3 [Pan
troglodytes]
Length = 181
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 8/139 (5%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRS 142
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+GR R S R +
Sbjct: 102 HGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRHRSPPRFHT 161
Query: 143 RSPYRHRSHEDRSHSGHGR 161
R R+H+ HGR
Sbjct: 162 GHHPRERNHQCSPDHRHGR 180
>gi|189209401|ref|XP_001941033.1| splicing factor U2af 38 kDa subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977126|gb|EDU43752.1| splicing factor U2af 38 kDa subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 214
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ +++Q HF+ FYED++ EL +YG +E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNAQQMQMHFDAFYEDIWCELCQYGLVEELVVCDNNNDHLIGNVYVRFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A +L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 EDAQKACDALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSAE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R +RS SRS +P
Sbjct: 174 LDRELDMCTRKWLKERGRDARSMSRSPTP 202
>gi|154279620|ref|XP_001540623.1| splicing factor U2AF 35 kDa subunit [Ajellomyces capsulatus NAm1]
gi|150412566|gb|EDN07953.1| splicing factor U2AF 35 kDa subunit [Ajellomyces capsulatus NAm1]
Length = 270
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 91/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 116 PAYDTK-NKMNPSQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYE 174
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 175 DSAQQACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 234
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS +RS SP
Sbjct: 235 LERELELSTKKWLKMRGRDERSVTRSPSP 263
>gi|302502949|ref|XP_003013435.1| hypothetical protein ARB_00253 [Arthroderma benhamiae CBS 112371]
gi|302652540|ref|XP_003018117.1| hypothetical protein TRV_07874 [Trichophyton verrucosum HKI 0517]
gi|291176999|gb|EFE32795.1| hypothetical protein ARB_00253 [Arthroderma benhamiae CBS 112371]
gi|291181728|gb|EFE37472.1| hypothetical protein TRV_07874 [Trichophyton verrucosum HKI 0517]
Length = 180
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 88/142 (61%), Gaps = 13/142 (9%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
N ++P ++Q HF+ FYED + E+ KYGEIE + +C+N DH+ F+ E+ A +A
Sbjct: 32 NKMNPSQLQNHFDAFYEDFWCEMCKYGEIEEVVVCENNNDHLIGNVYARFKYEDSAQKAC 91
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-- 127
+L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +L R+L
Sbjct: 92 DALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSEELDRELEL 151
Query: 128 ----FGRYRRRHSRSRSRSRSP 145
+ R R R RS +RS SP
Sbjct: 152 STKKWLRLRGRDERSVTRSPSP 173
>gi|330940524|ref|XP_003305953.1| hypothetical protein PTT_18947 [Pyrenophora teres f. teres 0-1]
gi|311316782|gb|EFQ85946.1| hypothetical protein PTT_18947 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ +++Q HF+ FYED++ EL +YG +E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNAQQMQMHFDAFYEDIWCELCQYGLVEELVVCDNNNDHLIGNVYVRFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A +L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 EDAQKACDALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSAE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R +RS SRS +P
Sbjct: 174 LDRELDMCTRKWLKERGRDARSMSRSPTP 202
>gi|367052051|ref|XP_003656404.1| hypothetical protein THITE_2091571 [Thielavia terrestris NRRL 8126]
gi|347003669|gb|AEO70068.1| hypothetical protein THITE_2091571 [Thielavia terrestris NRRL 8126]
Length = 231
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 91/146 (62%), Gaps = 11/146 (7%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+ F+ E
Sbjct: 78 PAFDPK-NRMNASQLQNHFDAFYEDIWCEMCKYGELEELVVCDNNNDHLIGNVYARFKYE 136
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 137 DSAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKDPSPE 196
Query: 123 LRRQL---FGRYRRRHSRSRSRSRSP 145
L R+L ++ + RSRS +RSP
Sbjct: 197 LERELQLATKKWLKMKPRSRSPTRSP 222
>gi|451850761|gb|EMD64062.1| hypothetical protein COCSADRAFT_199489 [Cochliobolus sativus
ND90Pr]
Length = 211
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ +++Q HF+ FYED++ EL +YG +E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNAQQMQMHFDAFYEDIWCELCQYGLVEELVVCDNNNDHLIGNVYVRFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A +L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 EDAQKACDALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSAE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R +RS SRS +P
Sbjct: 174 LDRELDMCTRKWLKERGRDARSMSRSPTP 202
>gi|342890175|gb|EGU89039.1| hypothetical protein FOXB_00451 [Fusarium oxysporum Fo5176]
Length = 209
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 ESAQKACDELNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R +S SRS +P
Sbjct: 174 LDRDLTLSTKKWLKERGRDEKSASRSPTP 202
>gi|353245348|emb|CCA76358.1| related to splicing factor U2AF 35 kd subunit [Piriformospora
indica DSM 11827]
Length = 217
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 79/116 (68%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ F E +A A+ +
Sbjct: 63 LSAKELQEGFDAVYEDLYCELTKFGHLLELHVCDNVGDHLIGNVYARFEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S +L++ L
Sbjct: 123 LNERWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASPELKKSL 178
>gi|452845011|gb|EME46945.1| hypothetical protein DOTSEDRAFT_70773 [Dothistroma septosporum
NZE10]
Length = 209
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 13/140 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
++P ++Q HF+ FYED + E+ KYGEIE + +CDN DH+ F+ E+ A +A +
Sbjct: 63 MNPSQLQNHFDAFYEDFWCEMCKYGEIEEVVVCDNNNDHLIGNVYARFKYEDSAQKACDA 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +L R+L
Sbjct: 123 LNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSAELDRELELAT 182
Query: 128 --FGRYRRRHSRSRSRSRSP 145
+ R R R RS +RS SP
Sbjct: 183 KKWLRERGRDDRSVTRSPSP 202
>gi|169846828|ref|XP_001830128.1| splicing factor U2AF 26 kDa subunit [Coprinopsis cinerea
okayama7#130]
gi|116508898|gb|EAU91793.1| splicing factor U2AF 26 kDa subunit [Coprinopsis cinerea
okayama7#130]
Length = 230
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 102/191 (53%), Gaps = 41/191 (21%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ S
Sbjct: 63 LTEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDS 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S +L RQL
Sbjct: 123 CNERWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLPSPELLRQL---- 178
Query: 132 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHR---RGR 188
RH + R +P ++ +G G PS R RGR
Sbjct: 179 --RHGQRLERKLNP-------PKNENGAG------------------GWEPSKREGGRGR 211
Query: 189 SRSPGGRRYHS 199
S SPG R HS
Sbjct: 212 SASPGRRTTHS 222
>gi|340519983|gb|EGR50220.1| predicted protein [Trichoderma reesei QM6a]
Length = 209
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNASQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A+ A ++L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSASAACEALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS+SRS +P
Sbjct: 174 LDRELTLSTKKWLKMRGRDERSQSRSPTP 202
>gi|451995958|gb|EMD88425.1| hypothetical protein COCHEDRAFT_1205672 [Cochliobolus
heterostrophus C5]
Length = 211
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ +++Q HF+ FYED++ EL +YG +E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNAQQMQMHFDAFYEDIWCELCQYGLVEELVVCDNNNDHLIGNVYVRFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A +L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 EDAQKACDALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R +RS SRS +P
Sbjct: 174 LDRELDMCTRKWLKERGRDARSMSRSPTP 202
>gi|390601914|gb|EIN11307.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 238
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 80/116 (68%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL+K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LTEQQLQEGFDAVYEDLYCELSKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L + L
Sbjct: 123 LNNRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVKSL 178
>gi|426242749|ref|XP_004015233.1| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 2 [Ovis
aries]
Length = 181
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISRDLRRQL+
Sbjct: 102 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLY 147
>gi|392570233|gb|EIW63406.1| splicing factor U2AF subunit [Trametes versicolor FP-101664 SS1]
Length = 230
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 99/175 (56%), Gaps = 26/175 (14%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
+++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +L+
Sbjct: 66 KELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDNLND 125
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ + DL R L R
Sbjct: 126 RWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLPTPDLARSL------R 179
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRS 189
H + R +P ++ G G R+ R RS SP+ R GR+
Sbjct: 180 HGQRLERRLNP-------TQTTGGGGWEPTKRE------GARARSASPAKRGGRN 221
>gi|395333024|gb|EJF65402.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 230
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 97/174 (55%), Gaps = 26/174 (14%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
+++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +L+
Sbjct: 66 KELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDNLND 125
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S +L R L R
Sbjct: 126 RWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASPELVRSL------R 179
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
H + R R H + G G R+ R RS SPS R GR
Sbjct: 180 HGQRLER-------RLHPPTTTGGGGWEPGKRE------GGRGRSASPSKRGGR 220
>gi|85112805|ref|XP_964414.1| splicing factor U2AF 23 kDa subunit [Neurospora crassa OR74A]
gi|336267438|ref|XP_003348485.1| hypothetical protein SMAC_02979 [Sordaria macrospora k-hell]
gi|28926195|gb|EAA35178.1| splicing factor U2AF 23 kDa subunit [Neurospora crassa OR74A]
gi|336464311|gb|EGO52551.1| splicing factor U2AF 23 kDa subunit [Neurospora tetrasperma FGSC
2508]
gi|350296398|gb|EGZ77375.1| splicing factor U2AF 23 kDa subunit [Neurospora tetrasperma FGSC
2509]
gi|380092140|emb|CCC10408.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 208
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 11/146 (7%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAFDPK-NRMNASQLQNHFDAFYEDIWCEMCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSPE 173
Query: 123 LRRQL---FGRYRRRHSRSRSRSRSP 145
L R+L ++ + RSRS +RSP
Sbjct: 174 LERELELSTKKWLKMRPRSRSPTRSP 199
>gi|409044918|gb|EKM54399.1| hypothetical protein PHACADRAFT_174897 [Phanerochaete carnosa
HHB-10118-sp]
Length = 226
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 97/176 (55%), Gaps = 29/176 (16%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LTEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQTAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S +L R L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASPELVRSL---- 178
Query: 132 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRG 187
RH + R R H +S G G +E R RS SP + G
Sbjct: 179 --RHGQRLER-------RLHPQQSTGGGG---------WEPSKSRARSASPRRKGG 216
>gi|170117299|ref|XP_001889837.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635177|gb|EDQ99488.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 229
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL+K+G + L++CDN+ DH+ + E +A A+ S
Sbjct: 63 LTEKELQEGFDAVYEDLYCELSKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDS 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S+DL L
Sbjct: 123 CNERWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKDLVSSL 178
>gi|453086343|gb|EMF14385.1| splicing factor U2AF 35 kDa subunit [Mycosphaerella populorum
SO2202]
Length = 209
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 13/140 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
++P+++Q HF+ FYED + E+ KYGEIE + +CDN DH+ F+ E+ A +A +
Sbjct: 63 MNPQQLQNHFDAFYEDFWCEMCKYGEIEEVVVCDNNNDHLIGNVYARFKYEDSAQKACDA 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K +L R+L
Sbjct: 123 LNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPGPELERELELAT 182
Query: 128 --FGRYRRRHSRSRSRSRSP 145
+ R R R RS +RS SP
Sbjct: 183 KKWLRERGRDERSVTRSASP 202
>gi|213401493|ref|XP_002171519.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
gi|211999566|gb|EEB05226.1| splicing factor U2AF subunit [Schizosaccharomyces japonicus yFS275]
Length = 205
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
G + ++ E F+ FYED+F E KYGE+E + +CDN+ DH+ F+ EE A A
Sbjct: 61 GKHMSQAELDEQFDAFYEDMFCEFAKYGEVEQIVVCDNIGDHLIGNVYVRFKYEESAQNA 120
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ L+ R+Y+ +P+ + SPVTDFREA CRQ+E + C RGG CNFMH K+ S L R+L
Sbjct: 121 IDDLNSRWYSQKPVYAELSPVTDFREACCRQHETSECGRGGLCNFMHAKKPSPHLIRELM 180
Query: 129 GRYRR 133
R+
Sbjct: 181 AAQRK 185
>gi|116182458|ref|XP_001221078.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88186154|gb|EAQ93622.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 208
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 9/150 (6%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAFDPK-NRMNASQLQNHFDAFYEDIWCEMCKYGEVEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K +
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPGPE 173
Query: 123 LRRQLFGRYRRRHSRSRSRSRSPYRHRSHE 152
L R+L ++ ++R RSRSP R S E
Sbjct: 174 LDREL-ELSTKKWLKTRPRSRSPTRSPSPE 202
>gi|440635086|gb|ELR05005.1| splicing factor U2AF 35 kDa subunit [Geomyces destructans 20631-21]
Length = 209
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 89/149 (59%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + LD +++Q HF+ FYED + E+ KYGE+E + ICDN DH+ F+ E
Sbjct: 55 PAYDPKAK-LDAKQLQMHFDAFYEDFWCEMCKYGELEEVVICDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C R G+CNF+H K S +
Sbjct: 114 DSAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRAGFCNFIHRKNPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + R R R RS +RS SP
Sbjct: 174 LERELDMSTRKWLRERGRDERSVTRSPSP 202
>gi|378729857|gb|EHY56316.1| hypothetical protein HMPREF1120_04400 [Exophiala dermatitidis
NIH/UT8656]
Length = 209
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNASQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS SP
Sbjct: 174 LERELELSTKKWLKMRGRDERSVSRSPSP 202
>gi|302414438|ref|XP_003005051.1| splicing factor U2AF 23 kDa subunit [Verticillium albo-atrum
VaMs.102]
gi|261356120|gb|EEY18548.1| splicing factor U2AF 23 kDa subunit [Verticillium albo-atrum
VaMs.102]
gi|346979310|gb|EGY22762.1| splicing factor U2AF 23 kDa subunit [Verticillium dahliae VdLs.17]
Length = 210
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++P ++Q HF+ FYED++ EL +YGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNPSQLQNHFDAFYEDIWCELCQYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDALNSRWYAARPIYAELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSDE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS +P
Sbjct: 174 LDRELVLSTKKWLKDRGRDERSPSRSPTP 202
>gi|449546411|gb|EMD37380.1| hypothetical protein CERSUDRAFT_114053 [Ceriporiopsis subvermispora
B]
Length = 230
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 27/178 (15%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LTEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVSSL---- 178
Query: 132 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRS 189
RH + R R H ++ G G R+ R RS SP+ +RGR+
Sbjct: 179 --RHGQRLER-------RLHPPKTEGGGGWEPTKRE------GARGRSASPA-KRGRN 220
>gi|2130488|pir||JC6068 U2 auxiliary factor small chain - fission yeast
(Schizosaccharomyces pombe)
Length = 200
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 76/118 (64%), Gaps = 7/118 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P + G R++ E F+ FYED+F E +KYGE+E L +CDN+ DH+ F+ E
Sbjct: 55 PIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 120
E A A+ L+ R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG CNFMH K+ S
Sbjct: 115 ESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPS 172
>gi|344298239|ref|XP_003420801.1| PREDICTED: splicing factor U2AF 26 kDa subunit-like [Loxodonta
africana]
Length = 181
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVTELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+
Sbjct: 102 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLY 147
>gi|194215326|ref|XP_001492664.2| PREDICTED: splicing factor U2AF 26 kDa subunit-like isoform 1
[Equus caballus]
gi|345785118|ref|XP_853689.2| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 2 [Canis
lupus familiaris]
gi|410983235|ref|XP_003997947.1| PREDICTED: splicing factor U2AF 26 kDa subunit [Felis catus]
Length = 181
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+
Sbjct: 102 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLY 147
>gi|335289512|ref|XP_003355908.1| PREDICTED: splicing factor U2AF 26 kDa subunit-like isoform 2 [Sus
scrofa]
Length = 181
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+
Sbjct: 102 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLY 147
>gi|154301115|ref|XP_001550971.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|156056997|ref|XP_001594422.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154702015|gb|EDO01754.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
gi|347840346|emb|CCD54918.1| similar to splicing factor U2af 38 kDa subunit [Botryotinia
fuckeliana]
Length = 210
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED + E+ K+GEIE + +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNASQLQNHFDAFYEDFWCEMCKFGEIEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSDE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + R R R RS +RS SP
Sbjct: 174 LDRELELSTKKWLRMRGRDERSVTRSPSP 202
>gi|336371539|gb|EGN99878.1| hypothetical protein SERLA73DRAFT_180138 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384299|gb|EGO25447.1| hypothetical protein SERLADRAFT_465605 [Serpula lacrymans var.
lacrymans S7.9]
Length = 230
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 99/181 (54%), Gaps = 31/181 (17%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LTEQELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVSSL---- 178
Query: 132 RRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSR---RHRSTSPSHRRGR 188
R+ R H ++ SG G +E R R RS SPS R G
Sbjct: 179 ---------RAGQRLERRLHPSKNESGGGG--------WEPTKREGGRGRSASPSRRGGH 221
Query: 189 S 189
S
Sbjct: 222 S 222
>gi|407919834|gb|EKG13056.1| Inositol monophosphatase [Macrophomina phaseolina MS6]
Length = 209
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 89/149 (59%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNASQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKACDDLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKVPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS SP
Sbjct: 174 LERELELSTKKWLKMRGRDERSVSRSPSP 202
>gi|302679412|ref|XP_003029388.1| hypothetical protein SCHCODRAFT_78248 [Schizophyllum commune H4-8]
gi|300103078|gb|EFI94485.1| hypothetical protein SCHCODRAFT_78248 [Schizophyllum commune H4-8]
Length = 228
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L+ +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LNEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVESL 178
>gi|312071157|ref|XP_003138478.1| hypothetical protein LOAG_02893 [Loa loa]
gi|307766351|gb|EFO25585.1| hypothetical protein LOAG_02893 [Loa loa]
Length = 307
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 86/123 (69%), Gaps = 11/123 (8%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q F++F+ +++ E++ KYGEI+ +N+CDN +HM F E A+ A+K+L+ R+
Sbjct: 75 QREFDEFFREVYLEIDEKYGEIDEMNVCDNTGEHMLGNVYIKFLHESNASNAMKALNNRW 134
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---FGRYRR 133
+ G+PI + SPV+DFR+A CRQYE C+RGG+CNFMHLK++S L+R+L G+ RR
Sbjct: 135 FDGKPIHCELSPVSDFRDACCRQYENGECSRGGFCNFMHLKKVSSSLKRKLEKESGKARR 194
Query: 134 RHS 136
+ S
Sbjct: 195 KKS 197
>gi|443916710|gb|ELU37680.1| splicing factor U2AF 26 kDa subunit [Rhizoctonia solani AG-1 IA]
Length = 517
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 76/112 (67%), Gaps = 7/112 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++Q+ F+ YEDL+ EL KYG + L++CDN+ DH+ + E +A A+ +L+ R
Sbjct: 353 QLQQDFDTTYEDLYCELAKYGNLLELHVCDNVGDHLIGNVYARYEWETEAQAAVDALNNR 412
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S+ L +L
Sbjct: 413 WYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKKLVSEL 464
>gi|358391429|gb|EHK40833.1| hypothetical protein TRIATDRAFT_301601 [Trichoderma atroviride IMI
206040]
Length = 209
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNASQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQAAADTLNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS +P
Sbjct: 174 LDRELTLSTKKWLKSRGRDERSASRSPTP 202
>gi|295661444|ref|XP_002791277.1| splicing factor U2AF 23 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280839|gb|EEH36405.1| splicing factor U2AF 23 kDa subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226292865|gb|EEH48285.1| splicing factor U2AF 23 kDa subunit [Paracoccidioides brasiliensis
Pb18]
Length = 209
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 55 PAYDTK-NKMNASQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQQACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L ++L + + R R RS +RS SP
Sbjct: 174 LEKELELSTKKWLKMRGRDERSVTRSPSP 202
>gi|406862517|gb|EKD15567.1| splicing factor U2AF 35 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 209
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED + E+ K+GEIE + +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNASQLQNHFDAFYEDFWCEMCKFGEIEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A +A +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQKASDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R++ + R R R RS SRS SP
Sbjct: 174 LDREIELSTKKWLRLRGRDERSASRSPSP 202
>gi|226470094|emb|CAX70328.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
gi|226486850|emb|CAX74502.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
gi|226486852|emb|CAX74503.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
gi|226489605|emb|CAX74953.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
gi|226489607|emb|CAX74954.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
Length = 221
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 7/95 (7%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE +N+CDNL DH+ FR EE A +A++ L+ R++ GRP+ + SPVTDFR
Sbjct: 92 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVQDLNERWFGGRPVHAELSPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
EA CRQYE C RGG+CNFMHLK ISR+L R+L+
Sbjct: 152 EACCRQYELGECTRGGFCNFMHLKPISRELCRKLY 186
>gi|256088283|ref|XP_002580274.1| U2 snRNP auxiliary factor small subunit [Schistosoma mansoni]
gi|108861853|gb|ABG21828.1| U2 snRNP auxiliary factor small subunit-like protein [Schistosoma
mansoni]
gi|360043806|emb|CCD81352.1| putative u2 snRNP auxiliary factor, small subunit [Schistosoma
mansoni]
Length = 221
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 7/95 (7%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE +N+CDNL DH+ FR EE A +A++ L+ R++ GRP+ + SPVTDFR
Sbjct: 92 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVQDLNERWFGGRPVHAELSPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
EA CRQYE C RGG+CNFMHLK ISR+L R+L+
Sbjct: 152 EACCRQYELGECTRGGFCNFMHLKPISRELCRKLY 186
>gi|238586680|ref|XP_002391246.1| hypothetical protein MPER_09353 [Moniliophthora perniciosa FA553]
gi|215455659|gb|EEB92176.1| hypothetical protein MPER_09353 [Moniliophthora perniciosa FA553]
Length = 249
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 78/116 (67%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +++QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 68 LTEKELQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWETEAQTAVDN 127
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L L
Sbjct: 128 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVDSL 183
>gi|444511515|gb|ELV09911.1| Splicing factor U2AF 35 kDa subunit [Tupaia chinensis]
Length = 218
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 85/131 (64%), Gaps = 8/131 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM- 58
+Y+ L +P + ++Q+H+++F++++F E+ KYGE+E +N+CDN DH+
Sbjct: 51 IYRNLHNSSPSAGGLHGAVSDAEMQQHYDEFFKEVFTEMEEKYGEVEEMNVCDNAGDHLA 110
Query: 59 ------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 112
FR EE A +A+ L+ R++ +PI + SPVTDFREA CRQYE C +GG+CN
Sbjct: 111 GNVYVKFRREEDAEKAVMDLNNRWFNRQPIRAELSPVTDFREACCRQYEMGECTQGGFCN 170
Query: 113 FMHLKRISRDL 123
MHLK ISR+L
Sbjct: 171 LMHLKPISREL 181
>gi|76156406|gb|AAX27612.2| SJCHGC07381 protein [Schistosoma japonicum]
Length = 219
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 7/95 (7%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE +N+CDNL DH+ FR EE A +A++ L+ R++ GRP+ + SPVTDFR
Sbjct: 90 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVQDLNERWFGGRPVHAELSPVTDFR 149
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
EA CRQYE C RGG+CNFMHLK ISR+L R+L+
Sbjct: 150 EACCRQYELGECTRGGFCNFMHLKPISRELCRKLY 184
>gi|302915833|ref|XP_003051727.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732666|gb|EEU46014.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 209
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 89/149 (59%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED++ EL KYGE+E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NRMNQSQLQNHFDAFYEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A +A L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 ESAQKACDELNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKNPSEE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R L + + R R +S SRS +P
Sbjct: 174 LDRDLQLSTKKWLKQRGRDEKSVSRSPTP 202
>gi|442763053|gb|JAA73685.1| Putative u2 snrnp splicing factor small subunit, partial [Ixodes
ricinus]
Length = 218
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 14/123 (11%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE + +CDN+ DH+ +R+E A A+ LSGRFY G+PI +++PVTDFR
Sbjct: 92 KYGEIEDMVVCDNIGDHIIGNVYVKYRDENSAGLAISMLSGRFYGGKPIQCEYTPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-------FGRYRRRHSRSRSRSRSPY 146
EA CRQ+ + C RGGYCNFMH+K + R +RR+L + YRRR R S SP
Sbjct: 152 EARCRQFVDGQCRRGGYCNFMHIKHVPRSVRRKLNERMYAEYPEYRRRSPRRSDCSASPD 211
Query: 147 RHR 149
+ R
Sbjct: 212 KRR 214
>gi|395851239|ref|XP_003798173.1| PREDICTED: splicing factor U2AF 35 kDa subunit [Otolemur garnettii]
Length = 223
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 77/107 (71%), Gaps = 10/107 (9%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRP 81
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ + R++ G+P
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVG---------NVYNNRWFNGQP 123
Query: 82 IIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
I + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 124 IHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 170
>gi|380802765|gb|AFE73258.1| splicing factor U2AF 26 kDa subunit isoform 1, partial [Macaca
mulatta]
Length = 131
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 78/108 (72%), Gaps = 8/108 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CD+L DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 24 FSQEVFTELQEKYGEIEEMNMCDDLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAV 83
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++LRRQ++GR
Sbjct: 84 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLRRQVYGR 131
>gi|396460408|ref|XP_003834816.1| similar to splicing factor U2AF 35 kDa subunit [Leptosphaeria
maculans JN3]
gi|312211366|emb|CBX91451.1| similar to splicing factor U2AF 35 kDa subunit [Leptosphaeria
maculans JN3]
Length = 207
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ +++Q HF+ FYED++ EL ++G +E L +CDN DH+ F+ E
Sbjct: 55 PAYDPK-NKMNAQQMQMHFDAFYEDIWCELCQFGLVEELVVCDNNNDHLIGNVYVRFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E + +A +L+ R+YAGRPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 EDSQKACDALNSRWYAGRPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L R+L + + R R RS SRS +P
Sbjct: 174 LERELDMCTRKWLKERGRDPRSMSRSPTP 202
>gi|358333982|dbj|GAA30118.2| splicing factor U2AF 35 kDa subunit [Clonorchis sinensis]
Length = 220
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 7/95 (7%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE +N+CDNL DH+ FR EE A +A++ L+ R++ GRP+ + SPVTDFR
Sbjct: 88 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVQDLNLRWFGGRPVHAELSPVTDFR 147
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
EA CRQYE C RGG+CNFMHLK ISR+L R+L+
Sbjct: 148 EACCRQYELGECTRGGFCNFMHLKPISRELCRKLY 182
>gi|225554163|gb|EEH02527.1| splicing factor U2AF 23 kDa subunit [Ajellomyces capsulatus G186AR]
Length = 147
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 86/140 (61%), Gaps = 13/140 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
++P ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E+ A +A +
Sbjct: 1 MNPSQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYEDSAQQACDA 60
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L+ R+YA RPI + SPVTDFREA CR C RGG+CN +H K S +L R+L
Sbjct: 61 LNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNLIHRKEPSPELERELELST 120
Query: 128 --FGRYRRRHSRSRSRSRSP 145
+ + R R RS +RS SP
Sbjct: 121 KKWLKMRGRDERSVTRSPSP 140
>gi|403169415|ref|XP_003328862.2| hypothetical protein PGTG_10163 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167949|gb|EFP84443.2| hypothetical protein PGTG_10163 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 278
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 7/121 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L ++ +FE FYED+F EL KYG + +++CDN+ DH+ + E++A A+ +
Sbjct: 63 LSEAELTSYFETFYEDVFCELVKYGNLLEMHVCDNVGDHLIGNVYARYDWEDEAQIAVDA 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
+ R+YAGRP+ + SPVTDFREA CRQ + CNRGG+CNFMHLK L R+L +
Sbjct: 123 FNQRWYAGRPLFAELSPVTDFREACCRQNDMGECNRGGFCNFMHLKEPRSSLVRELHAQQ 182
Query: 132 R 132
R
Sbjct: 183 R 183
>gi|402074537|gb|EJT70046.1| splicing factor U2AF 23 kDa subunit [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 209
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 91/158 (57%), Gaps = 19/158 (12%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + N ++ + Q HF+ FYEDL+ EL KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAHDPK-NRMNESQAQNHFDAFYEDLWCELCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ E+ A +A L+ R+YA RPI + SPVTDFREA CR C R G+CNF
Sbjct: 105 NVYARFKYEDSAQKACDELNNRWYAARPIYCELSPVTDFREACCRLNSGEGCARAGFCNF 164
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R+L + + R R RS SRS SP
Sbjct: 165 IHRKNPSEELDRELQLSTKKWLKMRGRDERSVSRSPSP 202
>gi|393217218|gb|EJD02707.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 231
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L + +QE F+ YEDL+ EL K+G + L++CDN+ DH+ + E +A A+ +
Sbjct: 63 LTEKDLQEGFDAVYEDLYCELAKFGHLLELHVCDNVGDHLIGNVYARYEWEAEAQAAVDN 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+ R+YAGRP+ + SPVTDFREA CRQ E CNRGG+CNFMHL+ S++L L
Sbjct: 123 LNDRWYAGRPLYAELSPVTDFREACCRQNENGECNRGGFCNFMHLRLASKELVDSL 178
>gi|328861623|gb|EGG10726.1| hypothetical protein MELLADRAFT_42160 [Melampsora larici-populina
98AG31]
Length = 244
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 7/121 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L ++ +FE FYED+F EL KYG + +++CDN+ DH+ + E++A A+ +
Sbjct: 63 LSEAELASYFETFYEDVFCELVKYGNLLEMHVCDNVGDHLIGNVYARYEWEDEAQIAVDA 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
+ R+YAGRP+ + SPVTDFREA CRQ + CNRGG+CNFMHLK L R+L +
Sbjct: 123 FNQRWYAGRPLFAELSPVTDFREACCRQNDMGECNRGGFCNFMHLKEPRSSLVRELHAQQ 182
Query: 132 R 132
R
Sbjct: 183 R 183
>gi|340371029|ref|XP_003384048.1| PREDICTED: splicing factor U2af 38 kDa subunit-like [Amphimedon
queenslandica]
Length = 188
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 8/119 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALK 70
+ P + Q HFE+F+ED+F E KYG IE +++CDNL DH+ FR EE A +A++
Sbjct: 62 VSPEEEQSHFEEFFEDVFIECEEKYGPIEKMHVCDNLGDHLIGNVYIKFRFEEDAEKAVQ 121
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
SL+ R++ +P+ + SPVT+F+EA C Q++ C RGG+CNF H+K I LRR L+G
Sbjct: 122 SLNNRWFNAQPVRAELSPVTNFKEACCHQFDVGQCGRGGFCNFWHIKPIPHKLRRFLYG 180
>gi|294936347|ref|XP_002781727.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Perkinsus marinus ATCC 50983]
gi|239892649|gb|EER13522.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Perkinsus marinus ATCC 50983]
Length = 278
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 7/102 (6%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFY 77
QEHFE FYE++F EL YGEIE L + DN+ DHM + +EE A ++ L+GRFY
Sbjct: 76 QEHFEAFYEEVFLELANYGEIEDLAVVDNIGDHMIGNVYVKYVKEESAEMCIQKLTGRFY 135
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI 119
AGR I ++SPVTDF EA CRQ+++ C+RGG+CNF+H K +
Sbjct: 136 AGRIIQPEYSPVTDFSEARCRQFDDAQCSRGGFCNFIHWKHV 177
>gi|226469292|emb|CAX70125.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
Length = 198
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 7/95 (7%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGEIE +N+CDNL DH+ FR EE A +A++ L+ R++ GRP+ + SPVTDFR
Sbjct: 69 KYGEIEEMNVCDNLGDHLVGNVYIKFRREEDAEKAVQDLNERWFGGRPVHAELSPVTDFR 128
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
EA CRQYE C RGG+CNFMHLK ISR+L R+L+
Sbjct: 129 EACCRQYELGECTRGGFCNFMHLKPISRELCRKLY 163
>gi|225680499|gb|EEH18783.1| splicing factor U2af 38 kDa subunit [Paracoccidioides brasiliensis
Pb03]
Length = 209
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 89/149 (59%), Gaps = 14/149 (9%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P D + N ++ ++Q HF+ FYED + E+ KYGE+E + +CDN DH+ F+ E
Sbjct: 55 PAYDTK-NKMNASQLQNHFDAFYEDFWCEMCKYGELEEVVVCDNNNDHLIGNVYARFKYE 113
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+ A + +L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +
Sbjct: 114 DSAQQGCDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPE 173
Query: 123 LRRQL------FGRYRRRHSRSRSRSRSP 145
L ++L + + R R RS +RS SP
Sbjct: 174 LEKELELSTKKWLKMRGRDERSVTRSPSP 202
>gi|170580643|ref|XP_001895352.1| U2 small nuclear RNA auxiliary factor small subunit [Brugia malayi]
gi|158597751|gb|EDP35805.1| U2 small nuclear RNA auxiliary factor small subunit, putative
[Brugia malayi]
Length = 294
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 86/126 (68%), Gaps = 12/126 (9%)
Query: 23 KIQEHFEDFYEDLFEELNK-YGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
K Q F++F+ +++ E+++ YGEI+ +N+CDN +HM F E A A+K+L+
Sbjct: 58 KEQREFDEFFREVYLEIDEEYGEIDEMNVCDNTGEHMLGNVYIKFMHESNAXNAVKALNN 117
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL----FGR 130
R++ G+PI + SPV+DFR+A CRQYE C+RGG+CNFMHLK++S L+R+L GR
Sbjct: 118 RWFNGKPIHCELSPVSDFRDACCRQYENGECSRGGFCNFMHLKKVSSSLKRKLEKESEGR 177
Query: 131 YRRRHS 136
RR+ S
Sbjct: 178 KRRKKS 183
>gi|324505367|gb|ADY42309.1| Splicing factor U2AF 35 kDa subunit [Ascaris suum]
Length = 275
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 13/119 (10%)
Query: 40 NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92
+K+G I+ +N+CDN+ +HM F EE A + +K L R++ G PI + SPVTDF
Sbjct: 100 DKFGPIDEMNVCDNIGEHMIGNVYVKFENEEDADKCVKGLDDRWFNGCPIYAELSPVTDF 159
Query: 93 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSH 151
REA CRQYE CN+G +CNFMHLK+ISRDLRR+L+G SR+ R Y SH
Sbjct: 160 REACCRQYELGGCNKGAFCNFMHLKQISRDLRRKLYG------SRADYRGTGYYGAGSH 212
>gi|209882274|ref|XP_002142574.1| U2 snRNP auxiliary factor small subunit [Cryptosporidium muris
RN66]
gi|209558180|gb|EEA08225.1| U2 snRNP auxiliary factor small subunit, putative [Cryptosporidium
muris RN66]
Length = 255
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 98/191 (51%), Gaps = 40/191 (20%)
Query: 39 LNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91
L KYGEI L +CDN+ DHM + EE A AL L GR Y+G+ I + SPV+D
Sbjct: 90 LAKYGEISDLLVCDNIGDHMIGNVYVRYTNEEYAKSALDKLKGRSYSGKLIDAELSPVSD 149
Query: 92 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH---SRSRSRSRSPYRH 148
F+EA CRQ+ + CNRGGYCNFMH+K I R ++ ++F + R H S+ +S S YRH
Sbjct: 150 FKEARCRQFIDGCCNRGGYCNFMHIKHIPRCVKNKIFQQMYRDHPEYSKKKSDRYSDYRH 209
Query: 149 RSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEER 208
DD + R+ T ++ +R+ SEER
Sbjct: 210 ---------------DDLKRELLDDDDRYDYT---------------KHTKYIRQSSEER 239
Query: 209 RAKIEQWNRER 219
R IE WN++R
Sbjct: 240 RQMIEMWNKQR 250
>gi|312088442|ref|XP_003145864.1| hypothetical protein LOAG_10291 [Loa loa]
gi|307758974|gb|EFO18208.1| hypothetical protein LOAG_10291 [Loa loa]
Length = 252
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 7/97 (7%)
Query: 40 NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92
+K+G I+ +N+CDN+ +HM F EE A + +K L R++ G P+ + SPVTDF
Sbjct: 99 DKFGPIDEMNVCDNIGEHMIGNVYVKFENEEDADKCVKGLENRWFNGSPVYAELSPVTDF 158
Query: 93 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
REA CRQYE CN+G +CNFMHLK+ISRDLRR+L+G
Sbjct: 159 REACCRQYELGGCNKGAFCNFMHLKQISRDLRRKLYG 195
>gi|170596198|ref|XP_001902678.1| splicing factor U2AF35 [Brugia malayi]
gi|158589514|gb|EDP28475.1| splicing factor U2AF35, putative [Brugia malayi]
Length = 247
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 7/97 (7%)
Query: 40 NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92
+K+G I+ +N+CDN+ +HM F EE A + +K L R++ G P+ + SPVTDF
Sbjct: 99 DKFGPIDEMNVCDNIGEHMIGNVYVKFENEEDADKCVKGLENRWFNGSPVYAELSPVTDF 158
Query: 93 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
REA CRQYE CN+G +CNFMHLK+ISRDLRR+L+G
Sbjct: 159 REACCRQYELGGCNKGAFCNFMHLKQISRDLRRKLYG 195
>gi|399217872|emb|CCF74759.1| unnamed protein product [Babesia microti strain RI]
Length = 234
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 7/97 (7%)
Query: 41 KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93
KYGE+E + +CDN+ DH+ + +E AA A+ +LSGRFY G+ I+V+++PVTDFR
Sbjct: 92 KYGEVEDMIVCDNIGDHIIGNVYVKYSDEMSAANAISTLSGRFYGGKQIMVEYTPVTDFR 151
Query: 94 EATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
EA CRQ+ + C RGGYCNFMH+K + R LRR+L +
Sbjct: 152 EARCRQFVDGQCKRGGYCNFMHVKHVPRSLRRKLMNK 188
>gi|325303588|tpg|DAA34232.1| TPA_inf: U2 snRNP splicing factor small subunit [Amblyomma
variegatum]
Length = 192
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 21/123 (17%)
Query: 19 LDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALK 70
+ ++QEHF++F+ED+F EL +KYGEIE +N+CDNL DH+ FR EE A +A+
Sbjct: 70 MTEEEMQEHFDNFFEDVFVELEDKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVA 129
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENT-------------CNRGGYCNFMHLK 117
L+ R++AG PI + SPVTDFREA CRQYE C R G+CNFMH +
Sbjct: 130 DLNNRWFAGHPIYSELSPVTDFREACCRQYEMGLKAKTWRSTTATEECTRSGFCNFMHPQ 189
Query: 118 RIS 120
IS
Sbjct: 190 PIS 192
>gi|392578781|gb|EIW71908.1| hypothetical protein TREMEDRAFT_58042 [Tremella mesenterica DSM
1558]
Length = 228
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 81/125 (64%), Gaps = 7/125 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P +G + P ++Q++F++FYED F EL KYG ++ +++CDN+ DH+ + E
Sbjct: 55 PAHTPEGQNMTPEQLQQNFDNFYEDFFIELCKYGNLQEMHVCDNVGDHLMGNVYARYEYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+A++A +L+ ++YA +P++ + SPV+DFREA CRQ E C R G+CNFMHL S+
Sbjct: 115 TEASKACDALNDKWYAMKPLMAELSPVSDFREACCRQNEMGECVREGFCNFMHLCHPSKS 174
Query: 123 LRRQL 127
L L
Sbjct: 175 LVSSL 179
>gi|398408734|ref|XP_003855832.1| hypothetical protein MYCGRDRAFT_51803 [Zymoseptoria tritici IPO323]
gi|339475717|gb|EGP90808.1| hypothetical protein MYCGRDRAFT_51803 [Zymoseptoria tritici IPO323]
Length = 209
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 13/140 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
+ P ++Q HF+ FY+D + E+ K+GE+E + +CDN DH+ F+ E+ A +A
Sbjct: 63 MTPSQLQNHFDAFYDDFWCEMCKFGELEEVVVCDNNNDHLIGNVYARFKYEDAAQKACDE 122
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S DL ++L
Sbjct: 123 LNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSPDLEKELELAT 182
Query: 128 --FGRYRRRHSRSRSRSRSP 145
R R R RS +RS SP
Sbjct: 183 KKHLRIRGRDERSVTRSPSP 202
>gi|321262008|ref|XP_003195723.1| U2 snRNP auxiliary factor small subunit [Cryptococcus gattii WM276]
gi|317462197|gb|ADV23936.1| U2 snRNP auxiliary factor small subunit, putative [Cryptococcus
gattii WM276]
Length = 223
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
PG +G + ++Q F+ FYED F EL KYG ++ + +CDN+ DH+ F E
Sbjct: 55 PGHTPEGQNMSAEELQADFDRFYEDFFIELAKYGNLQEMIVCDNVGDHLLGNVYARFEYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+AARA+++L+ R+YA RP+ + SPVTDFRE+ CRQ E C R G+CNFMHL +R
Sbjct: 115 AEAARAVQALNDRWYAMRPLHAELSPVTDFRESCCRQNELGECKREGFCNFMHLCHPTRS 174
Query: 123 LRRQL 127
L L
Sbjct: 175 LVSAL 179
>gi|402586021|gb|EJW79960.1| U2(RNU2) small nuclear RNA auxiliary factor 1 [Wuchereria
bancrofti]
Length = 215
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 69/97 (71%), Gaps = 7/97 (7%)
Query: 40 NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92
+K+G I+ +N+CDN+ +HM F EE A + +K L R++ G P+ + SPVTDF
Sbjct: 99 DKFGPIDEMNVCDNIGEHMIGNVYVKFENEEDADKCVKGLENRWFNGSPVYAELSPVTDF 158
Query: 93 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 129
REA CRQYE CN+G +CNFMHLK+ISRDLRR+L+G
Sbjct: 159 REACCRQYELGGCNKGAFCNFMHLKQISRDLRRKLYG 195
>gi|58271046|ref|XP_572679.1| splicing factor [Cryptococcus neoformans var. neoformans JEC21]
gi|134114768|ref|XP_773682.1| hypothetical protein CNBH1370 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256310|gb|EAL19035.1| hypothetical protein CNBH1370 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228938|gb|AAW45372.1| splicing factor, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 223
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
PG +G + ++Q F+ FYED F EL KYG ++ + +CDN+ DH+ F E
Sbjct: 55 PGHTPEGQNMSAEELQADFDRFYEDFFIELAKYGNLQEMIVCDNVGDHLLGNVYARFEYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+AARA+++L+ R+YA RP+ + SPVTDFRE+ CRQ E C R G+CNFMHL +R
Sbjct: 115 AEAARAVQALNDRWYAMRPLHAELSPVTDFRESCCRQNELGECKREGFCNFMHLCHPTRS 174
Query: 123 LRRQL 127
L L
Sbjct: 175 LVSAL 179
>gi|405122366|gb|AFR97133.1| splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 223
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
PG +G + ++Q F+ FYED F EL KYG ++ + +CDN+ DH+ F E
Sbjct: 55 PGHTPEGQNMSAEELQADFDRFYEDFFIELAKYGNLQEMIVCDNVGDHLLGNVYARFEYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
+AARA+++L+ R+YA RP+ + SPVTDFRE+ CRQ E C R G+CNFMHL +R
Sbjct: 115 AEAARAVQALNDRWYAMRPLHAELSPVTDFRESCCRQNELGECKREGFCNFMHLCHPTRS 174
Query: 123 LRRQL 127
L L
Sbjct: 175 LVSAL 179
>gi|294877742|ref|XP_002768104.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Perkinsus marinus ATCC 50983]
gi|239870301|gb|EER00822.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Perkinsus marinus ATCC 50983]
Length = 273
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 72/102 (70%), Gaps = 7/102 (6%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFY 77
QEHFE FYE++F EL YGEIE L + DN+ DHM + +EE + ++ L+GRFY
Sbjct: 76 QEHFEAFYEEVFLELANYGEIEDLAVVDNIGDHMIGNVYVKYVKEESSEMCIQKLTGRFY 135
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI 119
AGR I ++SPVTDF EA CRQ+++ C+RGG+CNF+H K +
Sbjct: 136 AGRIIQPEYSPVTDFSEARCRQFDDAQCSRGGFCNFIHWKHV 177
>gi|94536809|ref|NP_001035515.1| splicing factor U2AF 26 kDa subunit isoform 1 [Homo sapiens]
gi|92090952|gb|AAT72770.3| U2 small nuclear RNA auxiliary factor 1-like 3 splicing variant 1
[Homo sapiens]
Length = 181
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 89/139 (64%), Gaps = 8/139 (5%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ LS R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRS 142
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+GR RR S R +
Sbjct: 102 HGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRRRSPPRFHT 161
Query: 143 RSPYRHRSHEDRSHSGHGR 161
R R+H HGR
Sbjct: 162 GHHPRERNHRCSPDHWHGR 180
>gi|426388322|ref|XP_004060590.1| PREDICTED: splicing factor U2AF 26 kDa subunit [Gorilla gorilla
gorilla]
Length = 181
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 75/106 (70%), Gaps = 8/106 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGQWAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
V+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+
Sbjct: 102 HVELSPVTDFRESCCRQYEMGECTRGGFCNFMHLQPISQNLQRQLY 147
>gi|297276805|ref|XP_001112161.2| PREDICTED: splicing factor U2AF 26 kDa subunit-like [Macaca
mulatta]
Length = 181
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CD+L DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNMCDDLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++LRRQ++
Sbjct: 102 HAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLRRQVY 147
>gi|444509612|gb|ELV09368.1| Splicing factor U2AF 35 kDa subunit [Tupaia chinensis]
Length = 252
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 7/112 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L + Q+H+E+F++++F E+ +YGE+E +N+CDNL DH+ F EE A +AL +
Sbjct: 69 LSEAETQQHYEEFFQEVFTEMEEYGEVEEMNVCDNLGDHLVGNVYVKFGREEDAEKALVA 128
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
++ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+L
Sbjct: 129 VNSRWFHGQPIHAELSPVTDFREACCRQYETGACARGGFCNFMHLKPISREL 180
>gi|358059521|dbj|GAA94678.1| hypothetical protein E5Q_01331 [Mixia osmundae IAM 14324]
Length = 260
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 84/124 (67%), Gaps = 9/124 (7%)
Query: 11 GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEE 63
G+DA +D ++Q+ F+ F+ED++ EL K+G + +++CDN+ DH+ + E+
Sbjct: 73 GMDAGAKSVD--QLQDEFDQFFEDVYCELVKFGHLLEMHVCDNVGDHLIGNVYARYDFED 130
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
+A A+ +L+ R++AGRP+ + SPVTDFREATCRQ + C+RGG+CNF HL++ L
Sbjct: 131 EAQTAIDTLNTRWFAGRPLFAELSPVTDFREATCRQNDLGNCDRGGFCNFHHLRKPRAAL 190
Query: 124 RRQL 127
++L
Sbjct: 191 VKEL 194
>gi|406603045|emb|CCH45380.1| Splicing factor U2af small subunit A [Wickerhamomyces ciferrii]
Length = 160
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 9/132 (6%)
Query: 18 PLDPRKIQE--HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
P P+ QE F+DFY+D+F E + G+I+ L +C+N DH+ F EE A +A
Sbjct: 28 PTIPKDQQEVIKFDDFYKDIFIESSLIGQIDELTVCENHNDHLNGNVYVKFNSEEAATKA 87
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
S R+Y +PI + SPV DFR +TCRQ++ TC+RGG CNFMH+KR SRDL + L
Sbjct: 88 RDLFSTRWYNSKPIYCELSPVVDFRGSTCRQHDSKTCDRGGMCNFMHVKRPSRDLLKTLK 147
Query: 129 GRYRRRHSRSRS 140
R+ + +S
Sbjct: 148 LSQRKYYQEKKS 159
>gi|164660716|ref|XP_001731481.1| hypothetical protein MGL_1664 [Malassezia globosa CBS 7966]
gi|159105381|gb|EDP44267.1| hypothetical protein MGL_1664 [Malassezia globosa CBS 7966]
Length = 258
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 15/127 (11%)
Query: 17 NP--LDP------RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FRE 61
NP LDP ++Q+ F+ F+ D F+ L+ YG + +++CDN+ DH+ +
Sbjct: 53 NPKYLDPDCRASDAELQQQFDAFFSDFFKGLSDYGTLIEMHVCDNVGDHLIGNVYARYET 112
Query: 62 EEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+ A RA+ L+ R+Y RP+ + SPV+DFREA CRQ E N CNRGG CNFMHL+ S
Sbjct: 113 EDDAQRAVDGLNTRWYHQRPLFAELSPVSDFREACCRQNETNECNRGGQCNFMHLRYASP 172
Query: 122 DLRRQLF 128
+L R+L+
Sbjct: 173 ELVRELY 179
>gi|397606182|gb|EJK59239.1| hypothetical protein THAOC_20568 [Thalassiosira oceanica]
Length = 109
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 7/99 (7%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
+D K +E F FYED +EEL+K+G IE+L+ICDNL DHM F EEE+AA AL
Sbjct: 10 IDEAKAKEDFLSFYEDFYEELSKFGRIEALHICDNLGDHMLGHAYCKFSEEEEAADALNV 69
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 110
++GR+Y GR + V+FSPV DFREA CR ++E++C RGG+
Sbjct: 70 MNGRYYDGRQMEVEFSPVLDFREARCRDFDEDSCRRGGF 108
>gi|407044754|gb|EKE42803.1| U2 snRNP auxiliary factor small subunit, putative [Entamoeba
nuttalli P19]
Length = 227
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F FYED+F EL K+GEI+ + +C NL++HM FR+E+ A+ A+K L R+YAGR
Sbjct: 76 FNIFYEDIFNELAKHGEIDEMLVCRNLSEHMTGNVYVRFRDEKNASEAMKFLLARYYAGR 135
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
I +S VTDF+EA C+QYE C+R G+CNF+H+ + L+R+LF R R R R+
Sbjct: 136 MIQPSYSHVTDFKEARCKQYESGECDRHGFCNFLHVIEPNHSLQRKLFERQPLRQKRIRN 195
>gi|167526258|ref|XP_001747463.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774298|gb|EDQ87930.1| predicted protein [Monosiga brevicollis MX1]
Length = 454
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 78/122 (63%), Gaps = 18/122 (14%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADH-------MFREEEQAAR 67
G+ L ++QEHF+ FY D+F EL KYG +E +N+CDNL DH MF +E +
Sbjct: 254 GHSLSKGELQEHFDRFYADIFWELEEKYGAVEDMNVCDNLGDHLVGNVYVMFENDEDGEK 313
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A+ L+ R+Y VTDFREA CRQYE++ C RGG+CNFMHL+++ ++++ L
Sbjct: 314 AVLDLNNRWYG----------VTDFREACCRQYEKSECTRGGFCNFMHLRKLGDNMQKTL 363
Query: 128 FG 129
+G
Sbjct: 364 YG 365
>gi|67474354|ref|XP_652926.1| U2 auxiliary factor [Entamoeba histolytica HM-1:IMSS]
gi|56469830|gb|EAL47539.1| U2 auxiliary factor, putative [Entamoeba histolytica HM-1:IMSS]
gi|449709632|gb|EMD48863.1| U2 auxiliary factor, putative [Entamoeba histolytica KU27]
Length = 227
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F FYED+F EL K+GEI+ + +C NL++HM FR+E+ A+ A+K L R+YAGR
Sbjct: 76 FNIFYEDIFNELAKHGEIDEMLVCRNLSEHMTGNVYVRFRDEKNASEAMKFLLARYYAGR 135
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
I +S VTDF+EA C+QYE C+R G+CNF+H+ + L+R+LF R R R R+
Sbjct: 136 MIQPSYSHVTDFKEARCKQYESGECDRHGFCNFLHVIEPNHSLQRKLFERQPLRQKRIRN 195
>gi|50555327|ref|XP_505072.1| YALI0F06292p [Yarrowia lipolytica]
gi|49650942|emb|CAG77879.1| YALI0F06292p [Yarrowia lipolytica CLIB122]
Length = 203
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 12 VDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQ 64
++ G+ + + +HF FYED++ E K G +E + +C+N DH+ FR +E
Sbjct: 63 LNEDGSKMTKADLDKHFALFYEDIYMEAAKLGRLEEMIVCENGNDHLTGNTYLRFRNQED 122
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A RA + R+YAGRP+ + SPV DF E+ CRQ++ N C+RG CNFMH KR R L
Sbjct: 123 AQRACDLFNTRWYAGRPVWCELSPVNDFTESCCRQHDTNECSRGNMCNFMHAKRPPRQLA 182
Query: 125 RQLFGRYRRRHSRSRSR 141
+ L R+ ++R R R
Sbjct: 183 KDLDASQRKFYNRQRDR 199
>gi|397625258|gb|EJK67720.1| hypothetical protein THAOC_11212 [Thalassiosira oceanica]
Length = 188
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 7/98 (7%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
+D K +E F FYED +EEL+K+G IE+L+ICDNL DHM F EEE+AA AL
Sbjct: 75 IDEAKAKEDFLSFYEDFYEELSKFGRIEALHICDNLGDHMLGHAYCKFSEEEEAADALNV 134
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 109
++GR+Y GR + V+FSPV DFREA CR ++E++C RGG
Sbjct: 135 MNGRYYDGRQMEVEFSPVLDFREARCRDFDEDSCRRGG 172
>gi|145477617|ref|XP_001424831.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391898|emb|CAK57433.1| unnamed protein product [Paramecium tetraurelia]
Length = 289
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 12/151 (7%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESLNICDNLADH 57
MYQ M A GN + I+E FE+FYED+F +L ++GEIE L +C+N+ DH
Sbjct: 51 MYQNSPM--EVAIASGNAVSQAGIEEALEKFENFYEDVFLKLAEFGEIEDLIVCENIGDH 108
Query: 58 M-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 110
+ + E A +L Y RP+ +++SPV DF A C+QY + TC RGG
Sbjct: 109 LVGNVYVKYTSELFAESCFNALQNLSYENRPLQMEYSPVLDFSSAKCKQYIDGTCQRGGA 168
Query: 111 CNFMHLKRISRDLRRQLFGRYRRRHSRSRSR 141
CN++HLK+IS ++ LF + H R +
Sbjct: 169 CNYLHLKKISTKFKKSLFNQMYEEHPEYREK 199
>gi|145484545|ref|XP_001428282.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395367|emb|CAK60884.1| unnamed protein product [Paramecium tetraurelia]
Length = 312
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 14 AQGNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEE 63
A GN + I+E FE+FYED+F +L ++GEIE L +C+N+ DH+ + E
Sbjct: 62 ASGNAVSQAGIEEALEKFENFYEDVFLKLAEFGEIEDLIVCENIGDHLVGNVYVKYTSEL 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +L Y RP+ +++SPV DF A C+QY + TC RGG CN++HLK+IS
Sbjct: 122 FAESCFNTLQNLSYENRPLQMEYSPVLDFSSAKCKQYIDGTCQRGGACNYLHLKKISTKF 181
Query: 124 RRQLFGRYRRRHSRSRSR 141
++ LF + H R +
Sbjct: 182 KKSLFNQMYEEHPEYREK 199
>gi|440302723|gb|ELP95030.1| splicing factor U2AF 35 kDa subunit, putative [Entamoeba invadens
IP1]
Length = 263
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQA 65
+++G D +K++ F +FYED+F ++ YGE+E +C N DHM + +EE+A
Sbjct: 62 ESEGLEKDEKKMRHDFNEFYEDVFSQIQNYGEVEEFIVCGNDNDHMMGNVYVKYTKEEEA 121
Query: 66 ARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125
+A L+GR+YAG+ + F VTDFREA CRQ E+ TC RGG CNF+H+ L+R
Sbjct: 122 KKAKDELTGRYYAGKMLQPSFCRVTDFREAICRQQEQGTCTRGGQCNFIHVIEPDPSLKR 181
Query: 126 QLFG 129
LF
Sbjct: 182 GLFA 185
>gi|390478906|ref|XP_003735604.1| PREDICTED: LOW QUALITY PROTEIN: splicing factor U2AF 26 kDa subunit
[Callithrix jacchus]
Length = 283
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 99/174 (56%), Gaps = 32/174 (18%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F E++F EL KYGEIE +N+ DNL DH+ FR EE A RA+ L+
Sbjct: 133 EVQEHYDSF-EEVFTELQEKYGEIEEMNVXDNLGDHLVGNVYVKFRREEDAERAVAELNN 191
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
F G+ + + S VTDFRE+ C QYE C RGG+CNFMHL+ IS++LR + G
Sbjct: 192 XF-NGQAVHAELSHVTDFRESCCCQYEMGECTRGGFCNFMHLRPISQNLRPRSMG---SN 247
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
+ + RSP RSH+GH R R+RRH SP HR GR
Sbjct: 248 PTLNTPILRSP-------PRSHTGHRPR---------ERNRRH---SPDHRHGR 282
>gi|145478691|ref|XP_001425368.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392438|emb|CAK57970.1| unnamed protein product [Paramecium tetraurelia]
Length = 302
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 14 AQGNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEE 63
A GN + I+E FE+FYED+F +L ++GEIE L +C+N+ DH+ + E
Sbjct: 62 ASGNAVSQAGIEEALEKFENFYEDVFLKLAEFGEIEDLIVCENIGDHLVGNVYVKYTSEY 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +L Y RP+ +++SPV DF A C+QY + TC RGG CN++HLK+IS
Sbjct: 122 YAEGCFNALQNLSYENRPLQMEYSPVLDFSSAKCKQYIDGTCQRGGACNYLHLKKISTKF 181
Query: 124 RRQLFGRYRRRH 135
++ LF + H
Sbjct: 182 KKSLFNQMYEEH 193
>gi|167377957|ref|XP_001734607.1| splicing factor U2AF 23 kDa subunit [Entamoeba dispar SAW760]
gi|165903812|gb|EDR29241.1| splicing factor U2AF 23 kDa subunit, putative [Entamoeba dispar
SAW760]
Length = 227
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F FYED+F EL K+GE++ + +C NL++HM FR+E+ A+ A+K L R+YAGR
Sbjct: 76 FNIFYEDIFNELAKHGEVDEMLVCGNLSEHMTGNVYVRFRDEKNASEAMKFLLARYYAGR 135
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
I +S VTDF+EA C+QYE C+R G+CNF+H+ + L+R+LF R R R ++
Sbjct: 136 MIQPSYSHVTDFKEARCKQYECGECDRHGFCNFLHVIEPNHSLQRKLFERQPLRQKRIKN 195
>gi|145530874|ref|XP_001451209.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418853|emb|CAK83812.1| unnamed protein product [Paramecium tetraurelia]
Length = 302
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 14 AQGNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEE 63
A GN + I+E FE+FYED+F +L ++GEIE L +C+N+ DH+ + E
Sbjct: 62 ASGNAVSQAGIEEALEKFENFYEDVFLKLAEFGEIEDLIVCENIGDHLVGNVYVKYTSEY 121
Query: 64 QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +L Y +P+ +++SPV DF A C+QY + TC RGG CN++HLK+I+
Sbjct: 122 YAEGCFNALQNLSYENKPLQMEYSPVLDFSSAKCKQYIDGTCQRGGACNYLHLKKIATKF 181
Query: 124 RRQLFGRYRRRH 135
++ LF + H
Sbjct: 182 KKSLFNQMYEEH 193
>gi|294654416|ref|XP_456476.2| DEHA2A03058p [Debaryomyces hansenii CBS767]
gi|199428865|emb|CAG84428.2| DEHA2A03058p [Debaryomyces hansenii CBS767]
Length = 234
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 76/120 (63%), Gaps = 7/120 (5%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
G L+P+++QE+F+ FY+D+F + +GE+ S+ +C+N +H+ F E+ A A
Sbjct: 54 GEELNPKQVQEYFDHFYKDIFLKFALFGEVYSMVVCENDNNHLNGNVYVKFANEDSAYNA 113
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ L+ ++ GRP+ + SPV F +A CR YE +TCNRG +CNFMH+ + + L+ LF
Sbjct: 114 VMLLNQEWFGGRPVHCELSPVESFHDANCRAYESSTCNRGDHCNFMHIHKPTPQLKSSLF 173
>gi|226489603|emb|CAX74952.1| Splicing factor U2AF 35 kDa subunit [Schistosoma japonicum]
Length = 123
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 7/88 (7%)
Query: 48 LNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQY 100
+N+CDNL DH+ FR EE A +A++ L+ R++ GRP+ + SPVTDFREA CRQY
Sbjct: 1 MNVCDNLGDHLVGNVYIKFRREEDAEKAVQDLNERWFGGRPVHAELSPVTDFREACCRQY 60
Query: 101 EENTCNRGGYCNFMHLKRISRDLRRQLF 128
E C RGG+CNFMHLK ISR+L R+L+
Sbjct: 61 ELGECTRGGFCNFMHLKPISRELCRKLY 88
>gi|344304841|gb|EGW35073.1| hypothetical protein SPAPADRAFT_130696 [Spathaspora passalidarum
NRRL Y-27907]
Length = 251
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
+YQ + T D + L P++IQE F+ FY D+F GEI L +C+N +H+
Sbjct: 52 LYQNPKLKTATTDDAEDELTPKQIQEIFDQFYRDIFVHFATTGEISQLVVCENENNHLNG 111
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
++ E A+ ++K L+ ++ GRP+ + SPV F EA CR YE + C+RG +CN+
Sbjct: 112 NVYVRYKSETDASESMKQLNSEWFNGRPVHCELSPVDSFSEANCRAYETDVCSRGEHCNY 171
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSRSP 145
MH+++ ++ L LF + R + P
Sbjct: 172 MHVRKPTKKLADDLFKAQEKTRLLKRMQELIP 203
>gi|211939918|gb|ACJ13439.1| U2 snRNP auxiliary factor [Amphidinium carterae]
Length = 203
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFY 77
Q H E FY++++ EL+ YGE+E + + DN++DHM + EE A A + LS RFY
Sbjct: 79 QAHCEAFYQEVWLELSSYGEVEDMVVLDNVSDHMLGNIYVRYYREEDAEVAAQKLSNRFY 138
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH 135
R I V++SPV +F EA CR Y E C RGG CNFMH K I + +RR++ H
Sbjct: 139 GTRLIQVEYSPVANFSEARCRTYHETRCARGGLCNFMHTKHIPKAIRRRVVKNMYEEH 196
>gi|344234071|gb|EGV65941.1| splicing factor U2AF 23 kDa subunit [Candida tenuis ATCC 10573]
Length = 213
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P ++ L+P++I+E+FE+FY+D+F L K EI +L +C+N +H+ F+ E
Sbjct: 44 PKLNKNEQDLNPKQIREYFENFYKDVFIRLGKIEEIAALVVCENENNHLNGNVYCRFKNE 103
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A RA+ L+ ++ RP+ + SPV F +A CR Y+ N+C+R +CNFMH+ R S +
Sbjct: 104 EGARRAVVELNQEWFGSRPVHCELSPVQSFHDANCRDYDTNSCSR-DHCNFMHVIRPSDE 162
Query: 123 LRRQLFG 129
L RQLF
Sbjct: 163 LERQLFS 169
>gi|150951186|ref|XP_001387460.2| Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor 23 kDa
subunit) (U2 snRNP auxiliary factor small subunit)
(U2AF23) [Scheffersomyces stipitis CBS 6054]
gi|149388389|gb|EAZ63437.2| Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor 23 kDa
subunit) (U2 snRNP auxiliary factor small subunit)
(U2AF23), partial [Scheffersomyces stipitis CBS 6054]
Length = 184
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
+G L+P+++Q++F+ F++D+F + GEI+ L +C+N +H+ F+ +++AA
Sbjct: 59 EGEELNPKQLQQNFDQFFKDIFVKFATLGEIKELVVCENENNHLNGNVYVRFKTKQEAAE 118
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A L+ ++ RP+ + SPV+ F EA CR YE ++C RG +CNFMH++ ++ L L
Sbjct: 119 ATLLLNQEWFNARPVHCELSPVSSFPEANCRAYETSSCTRGDHCNFMHVRHPTQSLVESL 178
Query: 128 F 128
F
Sbjct: 179 F 179
>gi|302307163|ref|NP_983740.2| ADL355Wp [Ashbya gossypii ATCC 10895]
gi|299788867|gb|AAS51564.2| ADL355Wp [Ashbya gossypii ATCC 10895]
gi|374106953|gb|AEY95861.1| FADL355Wp [Ashbya gossypii FDAG1]
Length = 192
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSL 72
D + E FE FYED+F E ++GE++ L +C+N DH+ + + A A +L
Sbjct: 38 DLHALTEDFESFYEDVFLEAARFGEVQELIVCENKTDHLNGNVYIRYSTIDAAKAARDAL 97
Query: 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL-FGRY 131
R+Y RP+ D S VTDFREA C+ YEE TC+RG CNF+H + I + L ++
Sbjct: 98 ITRWYGERPLYCDLSHVTDFREAVCKSYEEGTCDRGEQCNFIHRRIIGYHIANGLMLSQW 157
Query: 132 RRRHSRSRSRS 142
+ RH + RS
Sbjct: 158 KSRHIMPQHRS 168
>gi|258575975|ref|XP_002542169.1| splicing factor U2AF 23 kDa subunit [Uncinocarpus reesii 1704]
gi|237902435|gb|EEP76836.1| splicing factor U2AF 23 kDa subunit [Uncinocarpus reesii 1704]
Length = 139
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 22/143 (15%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHMFREEEQAARA 68
P D + N ++P ++Q HF+ FYEDL+ + N Y F+ E+ A +A
Sbjct: 5 PAFDPK-NKMNPSQLQNHFDAFYEDLWYLIGNVYAR--------------FKYEDSAQKA 49
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL- 127
+L+ R+YA RPI + SPVTDFREA CR C RGG+CNF+H K S +L R L
Sbjct: 50 CDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKEPSAELERDLE 109
Query: 128 -----FGRYRRRHSRSRSRSRSP 145
+ + R R RS SRS SP
Sbjct: 110 LSTKKWLKMRGRDERSASRSPSP 132
>gi|260945991|ref|XP_002617293.1| hypothetical protein CLUG_02737 [Clavispora lusitaniae ATCC 42720]
gi|238849147|gb|EEQ38611.1| hypothetical protein CLUG_02737 [Clavispora lusitaniae ATCC 42720]
Length = 258
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 13/138 (9%)
Query: 14 AQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAA 66
A+ N + P E F+ FY D++ + GEIE + +C+N H+ + + + A
Sbjct: 75 AEKNKVSP----ESFDQFYADIYTHAAQSGEIEQMVVCENENFHLCGNVYVRYSDTQSAD 130
Query: 67 RALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ 126
+A+ L+ +Y GRP+ + SPV++F EA CR Y+ N C+RG +CNFMH +R S +LR Q
Sbjct: 131 KAVAQLNQEWYGGRPVYCELSPVSNFAEANCRAYDNNQCSRGDHCNFMHTRRPSSELRAQ 190
Query: 127 LFGRYRRRHSRSRSRSRS 144
L R +R S + ++ R+
Sbjct: 191 L--RQAQRKSLALAKIRA 206
>gi|363756078|ref|XP_003648255.1| hypothetical protein Ecym_8150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891455|gb|AET41438.1| Hypothetical protein Ecym_8150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 258
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 17 NPLDPRKIQ-EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
N ++ K+Q E F+ FYED+F E K+GE++ + +C+N DH+ F + A A
Sbjct: 99 NDINQVKLQAEDFDFFYEDVFLEAAKFGEVQEIIVCENKTDHLNGNVYIRFSTSDAAKAA 158
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR-QL 127
+ R+Y RP+ D S VTDFREA C+ YEE C RG CNF+H +R+ L L
Sbjct: 159 RDAFVTRWYGERPLYCDLSHVTDFREAVCKSYEEGKCGRGEQCNFIHRRRVDYSLANGLL 218
Query: 128 FGRYRRRH 135
++++RH
Sbjct: 219 LSQWKKRH 226
>gi|440295153|gb|ELP88066.1| splicing factor U2AF 23 kDa subunit, putative [Entamoeba invadens
IP1]
Length = 198
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
+ +++ F FYED+F EL + GEI+ + +C NL +HM F + + A A+K L
Sbjct: 70 KVVRDGFNVFYEDVFNELAERGEIDEMIVCANLNEHMLGNVFVRFHDVKGAESAMKILLA 129
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R+Y GR I +S VTDFR+A C+Q E C RGG+CNF+H+ + L+R+L R R
Sbjct: 130 RYYGGRMIQPSYSHVTDFRDAKCKQQEAGNCERGGFCNFIHVLEPNHALKRKLLERQPLR 189
Query: 135 HSR 137
R
Sbjct: 190 RQR 192
>gi|67482135|ref|XP_656417.1| U2 snRNP auxiliary factor small subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56473613|gb|EAL51031.1| U2 snRNP auxiliary factor small subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449708944|gb|EMD48310.1| zinc finger Cx8-C-x5-C-x3-H type (and similar) domain containing
protein [Entamoeba histolytica KU27]
Length = 279
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQA 65
D + D +KI F +FYED+F EL YGEI +C N DHM + EE A
Sbjct: 65 DGEALERDEKKIMREFNEFYEDVFRELENYGEILDFIVCGNDNDHMMGNVYVKYDTEEHA 124
Query: 66 ARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125
A A K+L+GR+YA + + +F VT+F+EA CRQ + TC RGG CNF+H+ R+L+
Sbjct: 125 AAAKKALTGRYYAKKILTPNFCRVTEFKEAICRQQQIGTCTRGGMCNFIHVIEPDRNLKY 184
Query: 126 QL 127
L
Sbjct: 185 DL 186
>gi|407038759|gb|EKE39293.1| zinc finger c-x8-c-x5-c-x3-h type domain containing protein
[Entamoeba nuttalli P19]
Length = 279
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQA 65
D + D +KI F +FYED+F EL YGEI +C N DHM + EE A
Sbjct: 65 DGEALERDEKKIMREFNEFYEDVFRELENYGEILDFIVCGNDNDHMMGNVYVKYDTEEHA 124
Query: 66 ARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125
A A K+L+GR+YA + + +F VT+F+EA CRQ + TC RGG CNF+H+ R+L+
Sbjct: 125 AAAKKALTGRYYAKKILTPNFCRVTEFKEAICRQQQIGTCTRGGMCNFIHVIEPDRNLKY 184
Query: 126 QL 127
L
Sbjct: 185 DL 186
>gi|167396211|ref|XP_001741956.1| splicing factor U2AF 23 kDa subunit [Entamoeba dispar SAW760]
gi|165893246|gb|EDR21570.1| splicing factor U2AF 23 kDa subunit, putative [Entamoeba dispar
SAW760]
Length = 278
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 13 DAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQA 65
D + D +KI F +FYED+F EL YGEI +C N DHM + EE A
Sbjct: 64 DGEALERDEKKIMREFNEFYEDVFRELENYGEILDFIVCGNDNDHMMGNVYVKYDTEEHA 123
Query: 66 ARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125
A A K+L+GR+YA + + +F VT+F+EA CRQ + TC RGG CNF+H+ R+L+
Sbjct: 124 AAAKKALTGRYYAKKILAPNFCRVTEFKEAICRQQQIGTCTRGGMCNFIHVIEPDRNLKY 183
Query: 126 QL 127
L
Sbjct: 184 DL 185
>gi|149056307|gb|EDM07738.1| U2 small nuclear RNA auxiliary factor 1-like 4, isoform CRA_c
[Rattus norvegicus]
Length = 188
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 63/87 (72%), Gaps = 8/87 (9%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYE 101
R++ G+ + + SPVTDFRE+ CRQYE
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYE 159
>gi|190347807|gb|EDK40149.2| hypothetical protein PGUG_04247 [Meyerozyma guilliermondii ATCC
6260]
Length = 307
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 120/248 (48%), Gaps = 28/248 (11%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++IQ+ F+ FY+D+F + + GEI+++ +C+N DH+ F + A + +L+
Sbjct: 47 QQIQQRFDQFYQDVFVYIARIGEIDAMVVCENDNDHLNGNVYVKFMNDTVAETVMNALNE 106
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF---GRY 131
+Y PI + SPV F++A CR Y+ C+RGG+CNFMH++R + +++ L ++
Sbjct: 107 EWYDALPIHCELSPVESFQDANCRAYDAGACSRGGHCNFMHIRRPTPEVKSVLHQAQDKW 166
Query: 132 RRRHSRSRSRSRSPY------RHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHR 185
+ + + P R +++E+R RR + K + + R T S +
Sbjct: 167 KVEKALEKVAPDDPLVVAMRERVKAYEER----EARRKESEKKVTQESEK--RVTEESEK 220
Query: 186 RGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLM 245
R + R E + +R K E+ + + QE + N G D+ +N +
Sbjct: 221 RVTEENEKKR----VTEENEKVKRVKSEESEKVSKIQETKIESN--GHGEDKSTDNSKIT 274
Query: 246 QNGNGYHS 253
+N G +S
Sbjct: 275 KNEVGTNS 282
>gi|367009756|ref|XP_003679379.1| hypothetical protein TDEL_0B00390 [Torulaspora delbrueckii]
gi|359747037|emb|CCE90168.1| hypothetical protein TDEL_0B00390 [Torulaspora delbrueckii]
Length = 190
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 21/147 (14%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
+Y L + G+D Q FEDFYED++ E ++G + S+ +C+N DH+
Sbjct: 55 LYNMLHIPASGLD-----------QSSFEDFYEDVYIEACRFGAVRSMVVCENGNDHLKG 103
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F +A RA+ + R+Y RPI D + + DFR+A CR++++ C RG CNF
Sbjct: 104 NVYLHFEHPNEAQRAMDDFNTRWYDERPIYCDLTHIVDFRDAICRRHDQQACERGDECNF 163
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRS 140
MH++R S+ L+ L R + S+SRS
Sbjct: 164 MHIRRPSQGLKIDL---ERSQTSKSRS 187
>gi|146415096|ref|XP_001483518.1| hypothetical protein PGUG_04247 [Meyerozyma guilliermondii ATCC
6260]
Length = 307
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 120/248 (48%), Gaps = 28/248 (11%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++IQ+ F+ FY+D+F + + GEI+++ +C+N DH+ F + A + +L+
Sbjct: 47 QQIQQRFDQFYQDVFVYIARIGEIDAMVVCENDNDHLNGNVYVKFMNDTVAETVMNALNE 106
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF---GRY 131
+Y PI + SPV F++A CR Y+ C+RGG+CNFMH++R + +++ L ++
Sbjct: 107 EWYDALPIHCELSPVESFQDANCRAYDAGACSRGGHCNFMHIRRPTPEVKSVLHQAQDKW 166
Query: 132 RRRHSRSRSRSRSPY------RHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHR 185
+ + + P R +++E+R RR + K + + R T S +
Sbjct: 167 KVEKALEKVAPDDPLVVAMRERVKAYEER----EARRKESEKKVTQESEK--RVTEESEK 220
Query: 186 RGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLM 245
R + R E + +R K E+ + + QE + N G D+ +N +
Sbjct: 221 RVTEENEKKR----VTEENEKVKRVKSEESEKVLKIQETKIESN--GHGEDKSTDNSKIT 274
Query: 246 QNGNGYHS 253
+N G +S
Sbjct: 275 KNEVGTNS 282
>gi|255715815|ref|XP_002554189.1| KLTH0E16302p [Lachancea thermotolerans]
gi|238935571|emb|CAR23752.1| KLTH0E16302p [Lachancea thermotolerans CBS 6340]
Length = 189
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Query: 21 PRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH-------MFREEEQAARALKSLS 73
P Q F+ FYED++ E K+GE++++ +C+N DH MF A A S +
Sbjct: 65 PEAQQRDFDAFYEDVYMEACKFGELQAMVVCENKNDHLNGNVYLMFTNSRDANSAKDSFN 124
Query: 74 GRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
R++ RP+ +FS V+DFREA CR+++ +C RG CNFMH++R +RDL+ L
Sbjct: 125 TRWFNERPLYCEFSHVSDFREAICRKHDMRSCERGDECNFMHVQRPTRDLQSDL 178
>gi|354544051|emb|CCE40773.1| hypothetical protein CPAR2_108080 [Candida parapsilosis]
Length = 307
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L ++IQE F+ FY+D+F L GEI L +C+N +H+ F A+ +
Sbjct: 124 LTEKQIQEQFDLFYQDIFIHLGSMGEIYDLVVCENENNHLNGNVYVQFNSASDASLVNTA 183
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 131
L+ ++ GRP+ D SPV F +A CR Y+ N+C RG CN+MH+++ + L++ L+
Sbjct: 184 LNQEWFNGRPVHSDLSPVDSFPDAHCRAYDTNSCERGEMCNYMHIRQPTTSLKQSLYKAQ 243
Query: 132 RRRHS 136
+ +S
Sbjct: 244 DKMYS 248
>gi|448519331|ref|XP_003868065.1| hypothetical protein CORT_0B09260 [Candida orthopsilosis Co 90-125]
gi|380352404|emb|CCG22630.1| hypothetical protein CORT_0B09260 [Candida orthopsilosis]
Length = 280
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++IQE F+ FY+D+F L GEI +C+N +H+ F A+ +L+
Sbjct: 98 KQIQEQFDLFYQDIFIHLANMGEIYDFVVCENENNHLNGNVYVQFVSSSDASTVNTTLNQ 157
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
++ GRP+ D SPVTDF +A CR Y+ N+C RG CN+MH+++ S LR L+ +
Sbjct: 158 EWFNGRPVHSDLSPVTDFADARCRAYDTNSCERGEMCNYMHIRQPSPKLRELLYKAQDKM 217
Query: 135 HS 136
+S
Sbjct: 218 YS 219
>gi|401414385|ref|XP_003871690.1| putative U2 splicing auxiliary factor [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487909|emb|CBZ23153.1| putative U2 splicing auxiliary factor [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 210
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 19/146 (13%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
LD + +++HFE FY++++ ++G I L + NL DH+ F + + A R +K
Sbjct: 60 LDKKYLKKHFEHFYKEVWRTFMEFGRIAELRVVSNLGDHLLGNVYIRFEDPQVATRIVKE 119
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L G+ ++ + SPVT+F EA C++ EN C RG CN++H+ ++SR L +L
Sbjct: 120 LRGKKLNDVIVLPELSPVTNFAEACCKEDLENRCQRGEQCNYLHIMKVSRRLLEKLEKEQ 179
Query: 128 ---FGRYRRRH-----SRSRSRSRSP 145
+ + +RH R RSRSRSP
Sbjct: 180 SKYWKKKEKRHEHDSGDRKRSRSRSP 205
>gi|448101861|ref|XP_004199664.1| Piso0_002204 [Millerozyma farinosa CBS 7064]
gi|359381086|emb|CCE81545.1| Piso0_002204 [Millerozyma farinosa CBS 7064]
Length = 229
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
Q D +++Q+HFEDFY+D+F G+++++ +C+N +H+ F + A
Sbjct: 58 QAPITDEKELQQHFEDFYKDVFVRAATLGKVDAMVVCENNNNHLNGNVYIKFASRDIAYD 117
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
A+ L+ +Y GRP+ + SPV +A CR Y+ N+C+RG +CNFMH++R S L+ L
Sbjct: 118 AVVKLNQEWYDGRPVYCELSPVESLSDANCRAYDTNSCSRGDHCNFMHIRRPSPGLKSFL 177
Query: 128 F 128
F
Sbjct: 178 F 178
>gi|255730555|ref|XP_002550202.1| predicted protein [Candida tropicalis MYA-3404]
gi|240132159|gb|EER31717.1| predicted protein [Candida tropicalis MYA-3404]
Length = 481
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L +IQE F+ FY+D+F ++K GEI++L +C+N+ +H+ F ++A+ A K
Sbjct: 313 LTEEEIQEKFDLFYKDVFTHISKLGEIKNLVVCENVNNHLNGNVYVQFVRTQEASEASKQ 372
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
L+ ++ RP+ SPV DF EA C +Y C G CN+MHL+ + DL ++++
Sbjct: 373 LNSEWFNERPVYSTLSPVRDFEEAYCHEYSVGACEHGERCNYMHLRYPTPDLEQKMY 429
>gi|255730573|ref|XP_002550211.1| hypothetical protein CTRG_04509 [Candida tropicalis MYA-3404]
gi|240132168|gb|EER31726.1| hypothetical protein CTRG_04509 [Candida tropicalis MYA-3404]
Length = 293
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
Query: 19 LDP--RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARAL 69
+DP +IQE+F+ FY D+F +++ I L++C+N DH+ F EE A
Sbjct: 125 VDPTEEEIQEYFDQFYADVFVHISQMRPIYKLSVCENQNDHLNGNVYVQFFSEEDAGFVN 184
Query: 70 KSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ L+ ++ RP+ + SPV+DF EA CR Y+ C+RGG CN+MH+++ + +L +LF
Sbjct: 185 RQLNSEWFNERPVYSELSPVSDFEEAHCRAYDNGGCDRGGRCNYMHVRQPTEELFDELF 243
>gi|241948859|ref|XP_002417152.1| spliceosomal factor U2AF small subunit, putative [Candida
dubliniensis CD36]
gi|223640490|emb|CAX44743.1| spliceosomal factor U2AF small subunit, putative [Candida
dubliniensis CD36]
Length = 374
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH-------MFREEEQAARALKSLSGR 75
+ Q F+ F++D+F ++K+G+I + +C+N +H MF E A A L+
Sbjct: 209 QTQHDFDQFFQDIFVHISKFGQISDIAVCENENNHLAGNVYVMFESPEDAYNANLQLNQE 268
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYE-ENTCNRGGYCNFMHLKRISRDLRRQLF 128
+Y GRP+ + SPV+DF EA C Y + C RG CN+MH++ SRDL + L+
Sbjct: 269 WYNGRPVYSELSPVSDFNEACCEAYSYYHNCERGAMCNYMHIRLPSRDLEQSLY 322
>gi|149244812|ref|XP_001526949.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449343|gb|EDK43599.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 295
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 8/137 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
L ++QE + F++D+F L++ GE+ SL +C+N +H+ F E+ A +A +
Sbjct: 101 LSQLQLQESLDLFFQDVFIHLSQKGEVASLVVCENENNHLNGNVYVRFYSEKDAQQANQE 160
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF-GR 130
L+ ++ GRP+ D SPV F EA CR Y+ N+C RG CN+MHL+ ++ L +L G+
Sbjct: 161 LNQEWFNGRPVHSDLSPVYSFDEARCRAYDTNSCERGEMCNYMHLRLPTKSLLDKLTQGQ 220
Query: 131 YRRRHSRSRSRSRSPYR 147
++ S+ R ++ R
Sbjct: 221 EKKYASKRLERLKTELR 237
>gi|448097995|ref|XP_004198814.1| Piso0_002204 [Millerozyma farinosa CBS 7064]
gi|359380236|emb|CCE82477.1| Piso0_002204 [Millerozyma farinosa CBS 7064]
Length = 229
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 7/114 (6%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
+++Q+HFEDFY+D+F G+++++ +C+N +H+ F + A A+ L+
Sbjct: 65 KELQQHFEDFYKDVFVRAATLGKVDAMVVCENNNNHLNGNVYIKFSSRDIAYDAVVKLNQ 124
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+Y GRP+ + SPV +A CR Y+ N+C+RG +CNFMH++R S L+ LF
Sbjct: 125 EWYDGRPVYCELSPVESLSDANCRAYDTNSCSRGDHCNFMHIRRPSPGLKNFLF 178
>gi|406696973|gb|EKD00243.1| splicing factor [Trichosporon asahii var. asahii CBS 8904]
Length = 161
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 7/107 (6%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P +G + ++Q F+ FYED F EL KYG ++ +++CDN+ DH+ + E
Sbjct: 55 PSHTPEGLTMTKDELQADFDRFYEDFFIELCKYGNVQEMHVCDNIGDHLEGNVYVRYEWE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 109
+A +A++ L+ R+Y RP+ + SPV+DFREA CRQ E C R G
Sbjct: 115 AEANKAVEQLNNRWYGMRPLHAELSPVSDFREACCRQNELGECKREG 161
>gi|196002924|ref|XP_002111329.1| hypothetical protein TRIADDRAFT_55208 [Trichoplax adhaerens]
gi|190585228|gb|EDV25296.1| hypothetical protein TRIADDRAFT_55208 [Trichoplax adhaerens]
Length = 462
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
++ F +FY D++ E GEI IC N H+ ++ EE+ +A + GR+
Sbjct: 207 LRSQFIEFYNDIYPEFQAAGEIREFKICCNYEPHLRGNVYVEYQSEEECHKAFRMFHGRW 266
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL-KRISRDLRRQLFGRYRRRH 135
YA R + FSPV +++ A C + + C +G +CNF+H+ + R F RRH
Sbjct: 267 YAQRQLFCQFSPVNNWKSAICGLFRQKRCPKGKHCNFLHVFENPVAQSTRSAFNDRHRRH 326
Query: 136 SRSRSRSRSPY-----------RHRSHEDRS-----HSGHGRRYDDRDK-YYESRSRRHR 178
S + +RS Y RHR+H+DR H H RR RD Y R R
Sbjct: 327 SFNNNRSVRDYGKIENRSSRSDRHRNHDDRVRRSDWHDRHNRRDRSRDNDNYRHEKRSKR 386
Query: 179 STSPSH 184
S SP+H
Sbjct: 387 SRSPTH 392
>gi|123474332|ref|XP_001320349.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903153|gb|EAY08126.1| hypothetical protein TVAG_302130 [Trichomonas vaginalis G3]
Length = 339
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 2 YQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH---- 57
Y + ++ P N I+ +F++FY D++EEL +G I + NL +H
Sbjct: 29 YHFMSLLPPDTLIIEN----ETIRNNFDEFYLDVYEELRTFGPISEFVVSGNLCEHLLGN 84
Query: 58 ---MFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFM 114
M+ E A A +L GR+Y GRPI V FSPV +F A CRQ++E C CNF+
Sbjct: 85 VLVMYENLENALTAYNNLRGRYYGGRPIDVQFSPVVNFNVAVCRQFKEGKCPHNEKCNFI 144
Query: 115 H 115
H
Sbjct: 145 H 145
>gi|213688747|gb|ACJ53923.1| U2 small nuclear RNA auxiliary factor 1 [Bubalus bubalis]
Length = 110
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 8/83 (9%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 28 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 87
Query: 75 RFYAGRPIIVDFSPVTDFREATC 97
R++ G+PI + SPVTDFREA C
Sbjct: 88 RWFNGQPIHAELSPVTDFREACC 110
>gi|401881081|gb|EJT45386.1| splicing factor [Trichosporon asahii var. asahii CBS 2479]
Length = 128
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 7/107 (6%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P +G + ++Q F+ FYED F EL KYG ++ +++CDN+ DH+ + E
Sbjct: 22 PSHTPEGLTMTKDELQADFDRFYEDFFIELCKYGNVQEMHVCDNIGDHLEGNVYVRYEWE 81
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGG 109
+A +A++ L+ R+Y RP+ + SPV+DFREA CRQ E C R G
Sbjct: 82 AEANKAVEQLNNRWYGMRPLHAELSPVSDFREACCRQNELGECKREG 128
>gi|367000677|ref|XP_003685074.1| hypothetical protein TPHA_0C04920 [Tetrapisispora phaffii CBS 4417]
gi|357523371|emb|CCE62640.1| hypothetical protein TPHA_0C04920 [Tetrapisispora phaffii CBS 4417]
Length = 229
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P N P + ++ YEDL+ EL KYG I + ICDN DH+ + E
Sbjct: 84 PNKPTTKNKSTPPIDDKEYDSIYEDLYIELAKYGRIMEMYICDNGNDHLRGNVYVRYSSE 143
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENT-CNRGGYCNFMHLKRISR 121
+ A A L+ R++ G+PI D + + DF EA CR+ EE + C RG +CNFMH+++ S
Sbjct: 144 QNARDANNELNTRWFNGKPIYCDLTHIHDFGEAICRKPEEKSGCERGDHCNFMHIRKPSP 203
Query: 122 DLRRQLFGRYRRR 134
L+ L R++
Sbjct: 204 QLQTDLENAQRKK 216
>gi|290993180|ref|XP_002679211.1| predicted protein [Naegleria gruberi]
gi|284092827|gb|EFC46467.1| predicted protein [Naegleria gruberi]
Length = 189
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 14/132 (10%)
Query: 12 VDAQGN--PLDPRKIQEHFEDFYEDLFEEL-NKYG-EIESLNICDNLADHMF-------R 60
VD G P I+E FE+FY D+F+EL K G +IE L ICDN +HMF
Sbjct: 50 VDENGILRPFSQEFIKEWFENFYADIFKELETKNGIKIEDLYICDNTCEHMFGNVYISLA 109
Query: 61 EEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYE---ENTCNRGGYCNFMHLK 117
A + + L G+++AGR + ++SPV DF EA C+ ++ E C +G CN +H+
Sbjct: 110 SIPDAQKCYELLKGKYHAGRLLTPEYSPVLDFSEAKCKLFDRGGEEHCPKGANCNNLHVL 169
Query: 118 RISRDLRRQLFG 129
R S +L + LFG
Sbjct: 170 RPSEELAKHLFG 181
>gi|254576833|ref|XP_002494403.1| ZYRO0A00638p [Zygosaccharomyces rouxii]
gi|238937292|emb|CAR25470.1| ZYRO0A00638p [Zygosaccharomyces rouxii]
Length = 137
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
+DP + F+ YED++ E ++G + S+ IC+N DH+ + E+ A A +
Sbjct: 9 IDP----QDFDALYEDIYMEACRFGPVRSMVICENRNDHLKGNVYLYYEREQDAEDAKNN 64
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
+ R++ RP+ D + V DFREA CR+++ TC RGG CNFMH++R S +R L
Sbjct: 65 FNTRWFDERPLYCDLTHVADFREAVCRKHDLGTCERGGDCNFMHVRRPSTKIRIDL 120
>gi|389592512|ref|XP_003721697.1| putative U2 splicing auxiliary factor [Leishmania major strain
Friedlin]
gi|321438230|emb|CBZ11982.1| putative U2 splicing auxiliary factor [Leishmania major strain
Friedlin]
Length = 210
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
LD + +++HFE FY++++ ++G I L + NL DH+ F + + A R +K
Sbjct: 60 LDKKYLKKHFEHFYKEVWRTFMEFGRIAELRVVSNLGDHLLGNVYIRFEDPQVATRIVKE 119
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L G+ ++ + SPVT+F EA C++ EN C RG CN++H+ ++SR L +L
Sbjct: 120 LRGKKLNDIIVLPELSPVTNFAEACCKEDLENRCQRGEQCNYLHIMKVSRRLLEKL 175
>gi|328352397|emb|CCA38796.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 , RNA-binding motif and
serine/arginine rich protein 2 [Komagataella pastoris
CBS 7435]
Length = 243
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 26 EHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFY 77
E F +D+F EL+ YG IE + IC+N H+ F +E AA + L+ R+Y
Sbjct: 122 ERFNKLLQDIFVELSLNYGFIEDIVICENNNVHLKGNVYIKFSTKESAANCNQELNNRWY 181
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
GRPI + SPV F EATCR+++ C RG CN+MH+KR + LF
Sbjct: 182 NGRPIYSELSPVRSFEEATCRKHDFGRCERGDMCNYMHIKRAPPTVTNNLF 232
>gi|146075783|ref|XP_001462772.1| putative U2 splicing auxiliary factor [Leishmania infantum JPCM5]
gi|398009570|ref|XP_003857984.1| U2 splicing auxiliary factor, putative [Leishmania donovani]
gi|134066852|emb|CAM59993.1| putative U2 splicing auxiliary factor [Leishmania infantum JPCM5]
gi|322496188|emb|CBZ31259.1| U2 splicing auxiliary factor, putative [Leishmania donovani]
Length = 210
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
LD + +++HFE FY++++ ++G I L + NL DH+ F + + A R +K
Sbjct: 60 LDRKYLKKHFEHFYKEVWRTFMEFGRIAELRVVSNLGDHLLGNVYIRFEDPQVATRIVKE 119
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L G+ ++ + SPVT+F EA C++ EN C RG CN++H+ ++SR L +L
Sbjct: 120 LRGKKLNDIIVLPELSPVTNFAEACCKEDLENRCQRGEQCNYLHIMKVSRRLLEKL 175
>gi|254567930|ref|XP_002491075.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030872|emb|CAY68795.1| Hypothetical protein PAS_chr2-1_0187 [Komagataella pastoris GS115]
Length = 239
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 26 EHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFY 77
E F +D+F EL+ YG IE + IC+N H+ F +E AA + L+ R+Y
Sbjct: 118 ERFNKLLQDIFVELSLNYGFIEDIVICENNNVHLKGNVYIKFSTKESAANCNQELNNRWY 177
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
GRPI + SPV F EATCR+++ C RG CN+MH+KR + LF
Sbjct: 178 NGRPIYSELSPVRSFEEATCRKHDFGRCERGDMCNYMHIKRAPPTVTNNLF 228
>gi|238879030|gb|EEQ42668.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 371
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADH-------MFREEEQAARALKSLSGRFY 77
Q+ F+ F++D+F ++K G+I + +C+N +H MF E A A L+ ++
Sbjct: 208 QKDFDQFFQDIFVHISKLGQIRDIAVCENENNHLAGNVYVMFESAEDAYNANLQLNQEWF 267
Query: 78 AGRPIIVDFSPVTDFREATCRQYEE-NTCNRGGYCNFMHLKRISRDLRRQLF 128
G+P+ D SPV DF +A C +Y + + C RG CN+MH++ S D+ L+
Sbjct: 268 NGKPVYSDLSPVNDFNDACCEEYRDYHDCQRGAMCNYMHVRLPSSDIEESLY 319
>gi|68490905|ref|XP_710740.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
gi|68490926|ref|XP_710731.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
gi|46431969|gb|EAK91483.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
gi|46431979|gb|EAK91492.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
Length = 371
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADH-------MFREEEQAARALKSLSGRFY 77
Q+ F+ F++D+F ++K G+I + +C+N +H MF E A A L+ ++
Sbjct: 208 QKDFDQFFQDIFVHISKLGQIRDIAVCENENNHLAGNVYVMFESAEDAYNANLQLNQEWF 267
Query: 78 AGRPIIVDFSPVTDFREATCRQYEE-NTCNRGGYCNFMHLKRISRDLRRQLF 128
G+P+ D SPV DF +A C +Y + + C RG CN+MH++ S D+ L+
Sbjct: 268 NGKPVYSDLSPVNDFNDACCEEYRDYHDCQRGAMCNYMHVRLPSSDIEESLY 319
>gi|156838866|ref|XP_001643131.1| hypothetical protein Kpol_455p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156113726|gb|EDO15273.1| hypothetical protein Kpol_455p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 190
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 7/107 (6%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F+ +YED+F EL K+G+I+S I +N DH+ + A A SL+ R+Y +
Sbjct: 70 FDGYYEDVFIELCKFGKIKSFLITENGNDHLRGNVYALYDNVRSAKEARDSLNTRWYNEK 129
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
P+ D + + DF +A CR+Y+ +C+RG CNFMH++R S L+ L
Sbjct: 130 PLYSDLTHIVDFNDAICRKYDVGSCDRGNECNFMHVRRPSPSLKSDL 176
>gi|390363017|ref|XP_788119.3| PREDICTED: uncharacterized protein LOC583099 [Strongylocentrotus
purpuratus]
Length = 746
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
+F +FYED+ E +YGE+ L +C N H+ +R EE+AA+A + +GRFY G
Sbjct: 247 NFHEFYEDVLPEFREYGEVVQLKVCRNWEPHLRGNVYVQYRSEEEAAKAAQVFAGRFYGG 306
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
+ + + PV+ ++ A C + + C RG +CNF+H+
Sbjct: 307 KQLDPRYCPVSRWKPAICGLFHRDKCPRGKHCNFLHV 343
>gi|342184023|emb|CCC93504.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 234
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D R +++HFE FY++ + + G I L + NL DH+ F + +A R ++
Sbjct: 58 FDRRYLRQHFERFYKETWRTFMELGHIAELRVVSNLGDHLLGNVYIRFEDSHEALRVVRE 117
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---F 128
L + ++ + SPVT+F +A C++ E C RG CN++H+ ++SR L +L
Sbjct: 118 LKAKKLNNIVLLPELSPVTNFADACCKEDLEGNCERGSQCNYLHIMKVSRKLMEKLEKEQ 177
Query: 129 GRYRRRH--------SRSRSRSRSPYRHRSHEDRSHSG 158
+YR++ SR R RS+ R R R+H G
Sbjct: 178 AKYRKKKDKHSGSTSSRKRERSKDRGRDRQKSPRAHGG 215
>gi|154331585|ref|XP_001561610.1| putative U2 splicing auxiliary factor [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058929|emb|CAM36756.1| putative U2 splicing auxiliary factor [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 210
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 7/116 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
LD + +++HFE FY++++ ++G I L + NL DH+ F + + A+R +
Sbjct: 60 LDKKYLKKHFEHFYKEVWRTFMEFGRIAELRVVSNLGDHLLGNVYIRFEDPQVASRIVNE 119
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L G+ ++ + SPVT+F EA C++ E+ C RG CN++H+ ++SR L +L
Sbjct: 120 LRGKKLNAVIVLPELSPVTNFAEACCKEDLESRCQRGEQCNYLHIMKVSRRLLEKL 175
>gi|241948837|ref|XP_002417141.1| spliceosomal U2AF small subunit, putative [Candida dubliniensis
CD36]
gi|223640479|emb|CAX44731.1| spliceosomal U2AF small subunit, putative [Candida dubliniensis
CD36]
Length = 372
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 6/127 (4%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDN---LADHM---FREEEQAARALKSL 72
L +I++ F+ FY+D+F + K G+I + +C+N L+ H+ F + E A A L
Sbjct: 202 LTDEQIRKDFDLFYQDIFVHIAKLGQINDMAVCENENHLSGHVYVKFNDYEDAYNANLQL 261
Query: 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYR 132
+ +Y GRPI + SPV +A C ++ CNRG CN++H+K+ ++ +++ L+
Sbjct: 262 NQEWYNGRPIYSELSPVNSISDAHCSAWDHGHCNRGATCNYLHVKQPTQGMKKSLYDSQS 321
Query: 133 RRHSRSR 139
+ ++ R
Sbjct: 322 KSYTLKR 328
>gi|345315324|ref|XP_001512892.2| PREDICTED: hypothetical protein LOC100082198, partial
[Ornithorhynchus anatinus]
Length = 384
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 8/80 (10%)
Query: 34 DLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVD 85
++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+ R++ G+ + +
Sbjct: 1 EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVSELNNRWFNGQAVQAE 60
Query: 86 FSPVTDFREATCRQYEENTC 105
SPVTDFRE+ CRQYE T
Sbjct: 61 LSPVTDFRESCCRQYEMGTA 80
>gi|238879039|gb|EEQ42677.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 377
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 11 GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDN---LADHM---FREEEQ 64
G+D L +IQ+ F+ FY+D+F + K G+I + +C+N L+ H+ F +
Sbjct: 201 GLDENHPVLTDEQIQKDFDLFYQDIFVHVAKLGQINDMAVCENENHLSGHVYIKFNDYND 260
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A A L+ +Y G+P+ + SPV +A C+ ++ C+RG CN++H+K+ ++ ++
Sbjct: 261 AIAANLQLNQEWYNGKPVYSELSPVNILADAHCKSWDHGHCDRGAKCNYLHVKQPTQGIK 320
Query: 125 RQLFGRYRRRHSRSR 139
+ L+ + ++ +
Sbjct: 321 KSLWDSQTKTYTLKK 335
>gi|156537789|ref|XP_001608048.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Nasonia vitripennis]
Length = 721
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSL 72
D R+ + HF DFY D+ EL K+G+I++L C N H+ + E +AARAL+ L
Sbjct: 230 DHRETRNHFRDFYFDVVPELEKFGKIKTLQYCKNTEAHLRGNLYVEYATEREAARALRGL 289
Query: 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR+YAGR + +F + +R A C C +G CNF+H+ R
Sbjct: 290 KGRWYAGRQLHCEFVNLKSWRGAICGMMR---CPKGSACNFLHVFR 332
>gi|402872263|ref|XP_003900043.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like isoform 1 [Papio
anubis]
Length = 500
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
I + F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+
Sbjct: 258 IYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRW 317
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 318 YAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 359
>gi|402872265|ref|XP_003900044.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like isoform 2 [Papio
anubis]
Length = 485
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
I + F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+
Sbjct: 243 IYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRW 302
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 303 YAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 344
>gi|68490634|ref|XP_710864.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
gi|68490659|ref|XP_710852.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
gi|46432105|gb|EAK91608.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
gi|46432119|gb|EAK91621.1| potential spliceosomal U2AF small subunit [Candida albicans SC5314]
Length = 377
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 11 GVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDN---LADHM---FREEEQ 64
G+D L +IQ+ F+ FY+D+F + K G+I + +C+N L+ H+ F +
Sbjct: 201 GLDENHPVLTDEQIQKDFDLFYQDIFVHVAKLGQINDMAVCENENHLSGHVYIKFNDYND 260
Query: 65 AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLR 124
A A L+ +Y G+P+ + SPV +A C+ ++ C+RG CN++H+K+ ++ ++
Sbjct: 261 AIAANLQLNQEWYNGKPVYSELSPVNILADAHCKSWDHGHCDRGAKCNYLHVKQPTQGIK 320
Query: 125 RQLFGRYRRRHSRSR 139
+ L+ + ++ +
Sbjct: 321 KSLWDSQTKTYTLKK 335
>gi|348554507|ref|XP_003463067.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Cavia porcellus]
Length = 490
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 38/217 (17%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 233 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------------ISRDLR 124
GR + +F PVT ++ A C +E C RG +CNF+H+ R +S D
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDLYLSPDRT 352
Query: 125 RQLFGRYRRRHSRS---------RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSR 175
FG+ R R+ R RSP S++ S RR R K RSR
Sbjct: 353 GSSFGKNLDRGKRAGHHDDYYGRTRRRRSPSPDHSYKRNGESERKRRSGHRGKKAHKRSR 412
Query: 176 ---RHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERR 209
RH S S +R RSRS G S +R GS++ R
Sbjct: 413 SHERHSSRSRGRKRNRSRSRG-----SQMRRGSQKHR 444
>gi|355758818|gb|EHH61525.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 1 [Macaca
fascicularis]
Length = 472
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
I + F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+
Sbjct: 230 IYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRW 289
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 290 YAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 331
>gi|355691520|gb|EHH26705.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 2 [Macaca
mulatta]
Length = 472
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
I + F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+
Sbjct: 230 IYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRW 289
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 290 YAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 331
>gi|358420073|ref|XP_003584415.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Bos taurus]
Length = 686
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR
Sbjct: 465 EIYQQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGR 524
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +F PVT + A C +E C RG YCNF+H+ R
Sbjct: 525 WYAGRQLQCEFCPVTQWNMAICGLFEIQQCPRGKYCNFLHVFR 567
>gi|257219672|gb|ACV51810.1| ZRSR2Y, partial [Bos taurus]
Length = 445
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR
Sbjct: 224 EIYQQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGR 283
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +F PVT + A C +E C RG YCNF+H+ R
Sbjct: 284 WYAGRQLQCEFCPVTQWNMAICGLFEIQQCPRGKYCNFLHVFR 326
>gi|380804095|gb|AFE73923.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2, partial [Macaca mulatta]
Length = 261
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFYED+ E G++ + NL H+ ++ EE+ AL +GR
Sbjct: 46 EIYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGR 105
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 106 WYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 148
>gi|397512928|ref|XP_003826785.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like isoform 1 [Pan
paniscus]
gi|397512932|ref|XP_003826787.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like isoform 3 [Pan
paniscus]
gi|397512934|ref|XP_003826788.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like isoform 4 [Pan
paniscus]
gi|410039576|ref|XP_003950650.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Pan troglodytes]
Length = 489
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 249 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 308
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 309 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDQT 368
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 168
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 369 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 425
Query: 169 YYESRSRRHRSTSPSHRRGRSRS 191
+ R R SPS R R RS
Sbjct: 426 ---TSKSRERHNSPSRGRNRHRS 445
>gi|1125020|dbj|BAA08532.1| U2AF1-RS1 [Homo sapiens]
Length = 479
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 239 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 298
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 299 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQT 358
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 168
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 359 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 415
Query: 169 YYESRSRRHRSTSPSHRRGRSRS 191
+ R R SPS R R RS
Sbjct: 416 ---TSKSRERHNSPSRGRNRHRS 435
>gi|397512930|ref|XP_003826786.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like isoform 2 [Pan
paniscus]
Length = 504
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 264 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 323
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 324 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDQT 383
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 168
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 384 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 440
Query: 169 YYESRSRRHRSTSPSHRRGRSRS 191
+ R R SPS R R RS
Sbjct: 441 ---TSKSRERHNSPSRGRNRHRS 460
>gi|2833265|sp|Q15695.2|U2AFL_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein auxiliary factor
35 kDa subunit-related protein 1; AltName: Full=CCCH
type zinc finger, RNA-binding motif and serine/arginine
rich protein 1; AltName: Full=U2(RNU2) small nuclear RNA
auxiliary factor 1-like 1
gi|1293653|gb|AAA98669.1| U2AFBPL [Homo sapiens]
Length = 479
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 239 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 298
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 299 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQT 358
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 168
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 359 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 415
Query: 169 YYESRSRRHRSTSPSHRRGRSRS 191
+ R R SPS R R RS
Sbjct: 416 ---TSKSRERHNSPSRGRNRHRS 435
>gi|403255704|ref|XP_003920552.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Saimiri boliviensis
boliviensis]
Length = 464
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 224 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 283
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
GR + +F PVT ++ A C +E C RG +CNF+H+ R + F R S
Sbjct: 284 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNN----EFWEANRDIYLS 339
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSH 184
R+ S + S E R GH D+YY SR R R+ SP H
Sbjct: 340 PDRTGSSFGKNS-ERRERMGH------HDEYY-SRLRGRRNPSPDH 377
>gi|189069316|dbj|BAG36348.1| unnamed protein product [Homo sapiens]
Length = 479
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 239 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 298
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 299 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQT 358
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 168
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 359 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 415
Query: 169 YYESRSRRHRSTSPSHRRGRSRS 191
+ R R SPS R R RS
Sbjct: 416 ---TSKSRERHNSPSRGRNRHRS 435
>gi|296234985|ref|XP_002762699.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Callithrix jacchus]
Length = 474
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
GR + +F PVT ++ A C +E C RG +CNF+H+ R + F R S
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNN----EFWEANRDIYLS 349
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSH 184
R+ S + S E R GH D+YY SR R R+ SP H
Sbjct: 350 PDRTGSSFGKNS-ERRERMGH------HDEYY-SRLRGRRNPSPDH 387
>gi|426395275|ref|XP_004063900.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Gorilla gorilla
gorilla]
Length = 461
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 221 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 280
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 281 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 320
>gi|395736068|ref|XP_002815836.2| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Pongo abelii]
Length = 489
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 249 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 308
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 309 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 348
>gi|355757207|gb|EHH60732.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 2 [Macaca
fascicularis]
Length = 467
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 221 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 280
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 281 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 320
>gi|441598673|ref|XP_004087475.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1 [Nomascus leucogenys]
gi|441598677|ref|XP_004087476.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1 [Nomascus leucogenys]
Length = 492
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 249 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 308
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 309 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 348
>gi|332223957|ref|XP_003261134.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 isoform 1 [Nomascus
leucogenys]
Length = 478
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|332221469|ref|XP_003259883.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1 isoform 5 [Nomascus
leucogenys]
Length = 507
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 264 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 323
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 324 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 363
>gi|291407124|ref|XP_002719965.1| PREDICTED: U2 small nuclear RNA auxiliary factor 1-like 2
[Oryctolagus cuniculus]
Length = 498
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 89/199 (44%), Gaps = 38/199 (19%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 237 QQFLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQTALSLFNGRWYA 296
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RDL
Sbjct: 297 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDLYLSPDRT 356
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRS 174
RR G + H R R R RSP S++ S RR R K
Sbjct: 357 GSAFGKNSERRDRTGYHDEYHGRLR-RRRSPSADHSYKRNGESERKRRSSHRGK------ 409
Query: 175 RRHRSTSPSHRRGRSRSPG 193
+ H+ TS S R SRS G
Sbjct: 410 KSHKHTSKSCERHSSRSRG 428
>gi|332860349|ref|XP_003317416.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 isoform 1 [Pan
troglodytes]
Length = 482
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
GR + +F PVT ++ A C +E C RG +CNF+H+ R + F R S
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNN----EFWEANRDIYLS 349
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSH 184
R+ S + S E R GH +DD Y SR R R+ SP H
Sbjct: 350 PDRTGSSFGKNS-ERRERMGH---HDD----YYSRLRGRRNPSPDH 387
>gi|332860347|ref|XP_520951.3| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 isoform 2 [Pan
troglodytes]
Length = 478
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|297709488|ref|XP_002831462.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Pongo abelii]
Length = 478
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|127797587|gb|AAH50451.2| Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich
2 [Homo sapiens]
Length = 482
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|332223959|ref|XP_003261135.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 isoform 2 [Nomascus
leucogenys]
Length = 482
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|297303397|ref|XP_001116975.2| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Macaca mulatta]
Length = 479
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 233 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 332
>gi|402909571|ref|XP_003917490.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Papio anubis]
Length = 480
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|402585483|gb|EJW79423.1| U2 snRNP splicing factor small subunit, partial [Wuchereria
bancrofti]
Length = 160
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 60/87 (68%), Gaps = 8/87 (9%)
Query: 23 KIQEHFEDFYEDLFEELNK-YGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
K Q F++F+ +++ E+++ YGEI+ +N+CDN +HM F E A+ A+K+L+
Sbjct: 73 KEQREFDEFFREVYLEIDEEYGEIDEMNVCDNTGEHMLGNVYIKFMHESNASNAVKALNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYE 101
R++ G+PI + SPV+DFR+A CRQYE
Sbjct: 133 RWFNGKPIHCELSPVSDFRDACCRQYE 159
>gi|119619307|gb|EAW98901.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 2, isoform CRA_b
[Homo sapiens]
Length = 446
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 231 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 290
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 291 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 330
>gi|380804933|gb|AFE74342.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2, partial [Macaca mulatta]
Length = 261
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 49 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 108
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 109 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 148
>gi|426395277|ref|XP_004063901.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Gorilla gorilla
gorilla]
Length = 295
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 51 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 110
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 111 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 150
>gi|327268246|ref|XP_003218909.1| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Anolis carolinensis]
Length = 487
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFYED+ E G++ + N H+ ++ E++ AL +GR
Sbjct: 260 EIYQQFLDFYEDVLPEFKNVGKVVQFKVSCNFEPHLRGNVYVQYQSEQECQEALTLFNGR 319
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 320 WYAGRQLQCEFCPVTRWKTAICGLFERQKCPRGKHCNFLHVFR 362
>gi|444707445|gb|ELW48720.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 [Tupaia chinensis]
Length = 612
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 363 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 422
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 423 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 462
>gi|407410372|gb|EKF32829.1| U2 splicing auxiliary factor, putative [Trypanosoma cruzi
marinkellei]
gi|407410375|gb|EKF32830.1| U2 splicing auxiliary factor, putative [Trypanosoma cruzi
marinkellei]
Length = 233
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 31/173 (17%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D + ++ HFE FY++ + + G I L + NL DH+ F E +A+ +
Sbjct: 58 FDRKYLKRHFEHFYKETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEEAAEASHIARE 117
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L + ++ + SPVT+F +A C++ E C RG CN++H+ ++SR L +L
Sbjct: 118 LKAKKLNEIILLPELSPVTNFADACCKEDLEGKCGRGAQCNYLHIIKVSRKLMEKLEKEQ 177
Query: 128 --FGRYRRRHS------------RSRSRSRSPYRHRSHEDRSH----SGHGRR 162
+ + + +HS R R RSRSP H S D H SGH R
Sbjct: 178 AKYWKKKEKHSRGGDRKRERSKDRGRDRSRSPRPHPS--DLCHICGKSGHISR 228
>gi|326913598|ref|XP_003203123.1| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Meleagris gallopavo]
Length = 473
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 36/174 (20%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F +FYED+ E G++ + N H+ ++ E+ AL SGR+YA
Sbjct: 235 QQFLEFYEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQTEKDCQAALALFSGRWYA 294
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDLRRQLFGR 130
GR + +F PVT ++ A C +E C RG +CNF+H+ + +RD+R
Sbjct: 295 GRQLHCEFCPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPNNEFWEANRDIR------ 348
Query: 131 YRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSH 184
S R+ ++ E R+ S H RD YY RSRR S SP H
Sbjct: 349 --------VSPERTNQLSKNSERRNRSSH------RDDYY-GRSRRRGSPSPDH 387
>gi|194227695|ref|XP_001490095.2| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Equus caballus]
Length = 470
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 232 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQTALSLFNGRWYA 291
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 292 GRQLQCEFCPVTQWKMAICGLFEIQQCPRGKHCNFLHVFR 331
>gi|395821701|ref|XP_003784175.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Otolemur garnettii]
Length = 482
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 229 QQFLDFYDDVLPEFKNVGKVIKFKVSCNLEPHLRGNVYVQYQSEEECQTALSVFNGRWYA 288
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 289 GRQLQCEFCPVTRWKMAICGLFEIKQCPRGRHCNFLHVFR 328
>gi|335305731|ref|XP_001926829.3| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
auxiliary factor 35 kDa subunit-related protein 2 [Sus
scrofa]
Length = 485
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 241 QQFLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQAALALFNGRWYA 300
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 301 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 340
>gi|410978386|ref|XP_003995574.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Felis catus]
Length = 468
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + N H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYDDVLPEFRSVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
GR + +F PVT ++ A C +E C RG +CNF+H+ R + F R S
Sbjct: 294 GRQLRCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNN----EFWEANRDIFLS 349
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRS 189
R+ S + + S + R +GH +D+YY R R RS SPSH RS
Sbjct: 350 PDRTGSSFGNGS-DRRERTGH------QDEYY-WRPGRRRSPSPSHSYERS 392
>gi|358375412|dbj|GAA91994.1| splicing factor U2AF 23 kDa subunit [Aspergillus kawachii IFO 4308]
Length = 184
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 44/158 (27%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQ P D + ++P ++Q HF+ FYED++ E+ KYGE+E L +CDN DH+
Sbjct: 51 MYQ-----NPAYDPKSK-MNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIG 104
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+ EE A A +L+ R G C RGG+CNF
Sbjct: 105 NVYARFKYEEDAQAACDALNSRCGEG-------------------------CVRGGFCNF 139
Query: 114 MHLKRISRDLRRQL------FGRYRRRHSRSRSRSRSP 145
+H K S +L R L + + R R +RS SRS SP
Sbjct: 140 IHRKDPSNELDRDLRLSTKKWLKERGRDARSVSRSPSP 177
>gi|397467387|ref|XP_003805402.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Pan paniscus]
Length = 478
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ A +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAAFSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 333
>gi|431899712|gb|ELK07664.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 [Pteropus alecto]
Length = 449
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ +E+ AL +GR+YA
Sbjct: 217 QQFLDFYEDVLPEFRNVGKVVQFKVSCNLEPHLRGNVYVQYQSKEECQAALSLFNGRWYA 276
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 277 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 316
>gi|410988239|ref|XP_004000394.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Felis catus]
Length = 519
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 288 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 347
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 348 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 387
>gi|380804633|gb|AFE74192.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2, partial [Macaca mulatta]
Length = 199
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 49 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 108
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 109 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 148
>gi|407849824|gb|EKG04420.1| U2 splicing auxiliary factor, putative [Trypanosoma cruzi]
Length = 233
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D + ++ HFE FY++ + + G I L + NL DH+ F E A+ +
Sbjct: 58 FDRKYLKRHFEHFYKETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEEAADASHIARE 117
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L + ++ + SPVT+F +A C++ E C RG CN++H+ ++SR L +L
Sbjct: 118 LKAKKLNEIILLPELSPVTNFADACCKEDLEGKCGRGAQCNYLHIIKVSRKLMEKLEKEQ 177
Query: 128 --FGRYRRRHSRS------------RSRSRSPYRHRSHEDRSH----SGHGRR 162
+ + + +HSR R RSRSP H S D H SGH R
Sbjct: 178 AKYWKKKEKHSRVSDRKRERSKDRGRERSRSPRPHPS--DLCHICGKSGHISR 228
>gi|21616732|gb|AAM66350.1|AF499017_1 U2 splicing auxiliary factor [Trypanosoma cruzi]
Length = 233
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D + ++ HFE FY++ + + G I L + NL DH+ F E A+ +
Sbjct: 58 FDRKYLKRHFEHFYKETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEEAADASHIARE 117
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L + ++ + SPVT+F +A C++ E C RG CN++H+ ++SR L +L
Sbjct: 118 LKAKKLNEIILLPELSPVTNFADACCKEDLEGKCGRGAQCNYLHIVKVSRKLMEKLEKEQ 177
Query: 128 --FGRYRRRHS------------RSRSRSRSPYRHRSHEDRSH----SGHGRR 162
+ + + +HS R R RSRSP H S D H SGH R
Sbjct: 178 AKYWKKKEKHSRGSDRKRERSKDRGRERSRSPRPHPS--DLCHICGKSGHISR 228
>gi|354479997|ref|XP_003502195.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Cricetulus griseus]
gi|344244263|gb|EGW00367.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 [Cricetulus griseus]
Length = 427
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 224 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 283
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C YE C +G +CNF+H+ R
Sbjct: 284 GRQLQCEFCPVTRWKIAICGLYEMQKCPKGKHCNFLHVFR 323
>gi|71399405|ref|XP_802775.1| U2 splicing auxiliary factor [Trypanosoma cruzi strain CL Brener]
gi|71657119|ref|XP_817079.1| U2 splicing auxiliary factor [Trypanosoma cruzi strain CL Brener]
gi|70864869|gb|EAN81329.1| U2 splicing auxiliary factor, putative [Trypanosoma cruzi]
gi|70882249|gb|EAN95228.1| U2 splicing auxiliary factor, putative [Trypanosoma cruzi]
Length = 233
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D + ++ HFE FY++ + + G I L + NL DH+ F E A+ +
Sbjct: 58 FDRKYLKRHFEHFYKETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEEAADASHIARE 117
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL---- 127
L + ++ + SPVT+F +A C++ E C RG CN++H+ ++SR L +L
Sbjct: 118 LKAKKLNEIILLPELSPVTNFADACCKEDLEGKCGRGAQCNYLHIIKVSRKLMEKLEKEQ 177
Query: 128 --FGRYRRRHS------------RSRSRSRSPYRHRSHEDRSH----SGHGRR 162
+ + + +HS R R RSRSP H S D H SGH R
Sbjct: 178 AKYWKKKEKHSRGSDRKRERSKDRGRERSRSPRPHPS--DLCHICGKSGHISR 228
>gi|426257963|ref|XP_004023719.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
auxiliary factor 35 kDa subunit-related protein 2-like
[Ovis aries]
Length = 502
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 262 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 321
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 322 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 361
>gi|396082086|gb|AFN83698.1| U2 small nuclear RNA auxillary factor [Encephalitozoon romaleae
SJ-2008]
Length = 259
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARA 68
+ LD +Q H + FYED F E++ KYG + L I N + + F +E+ + R
Sbjct: 51 SKLDNEAVQIHLDLFYEDWFSEVSMKYGAVRMLAIASNSSLQLLGNIYIEFEDEKASLRC 110
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
++ + R+Y+G+ I+V+ + C YE+ C +G C F+H+ +++ L +LF
Sbjct: 111 IEDIGKRYYSGKRIVVELGNCYRISDGVCTDYEKGLCGKGERCGFIHVAKVTESLMEELF 170
Query: 129 GRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
+++ S + ++ + +G G+R + RS + S +R R
Sbjct: 171 ASQELLYTQMDSMGKC----KTSDGGKVTGQGKRAE--------RSVEDGNNSGDYRMSR 218
Query: 189 SRSPGGRRYHSPVREGS 205
R G VRE S
Sbjct: 219 RRLGGQGDCIKRVREAS 235
>gi|355731037|gb|AES10395.1| zinc finger , RNA-binding motif and serine/arginine rich 2 [Mustela
putorius furo]
Length = 463
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 233 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 332
>gi|395841461|ref|XP_003793555.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Otolemur garnettii]
Length = 491
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 40/205 (19%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + N H+ ++ EE+ A +GR+YA
Sbjct: 233 QQFLDFYDDVLPEFKNVGKVIQFKVSCNWEPHLRGNVYVQYQTEEECQTAFSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRT 352
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRS 174
RR+ G + + R R RS SP DRS+ +G R + E +S
Sbjct: 353 GSSFGKNLERRERTGHHDEYYGRLRRRSPSP-------DRSYKRNGESERKRRSHREKKS 405
Query: 175 RRHRSTSPSHRRGRSRSPGGRRYHS 199
+H TS S R S + G +R HS
Sbjct: 406 HKH--TSKSCERHSSGNRGRKRDHS 428
>gi|281340363|gb|EFB15947.1| hypothetical protein PANDA_020065 [Ailuropoda melanoleuca]
Length = 398
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 167 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 226
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 227 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 266
>gi|358420032|ref|XP_003584397.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
auxiliary factor 35 kDa subunit-related protein 2 [Bos
taurus]
gi|359082042|ref|XP_003588252.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
auxiliary factor 35 kDa subunit-related protein 2 [Bos
taurus]
Length = 477
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 237 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 296
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 297 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 336
>gi|343958430|dbj|BAK63070.1| signal recognition particle 19kDa [Pan troglodytes]
Length = 310
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR++A
Sbjct: 70 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWHA 129
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 130 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 169
>gi|301788732|ref|XP_002929785.1| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Ailuropoda
melanoleuca]
Length = 464
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 233 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 332
>gi|205688456|sp|Q6YVX9.2|C3H16_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 16;
Short=OsC3H16
Length = 678
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 222 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 281
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ I +F VT ++ A C +Y + TC+RG CNF+H R
Sbjct: 282 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFR 327
>gi|222623064|gb|EEE57196.1| hypothetical protein OsJ_07143 [Oryza sativa Japonica Group]
Length = 635
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 179 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 238
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ I +F VT ++ A C +Y + TC+RG CNF+H R
Sbjct: 239 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFR 284
>gi|546061|gb|AAB30301.1| human U2af35 homolog [Mus musculus]
Length = 428
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 225 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 284
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C +G +CNF+H+ R
Sbjct: 285 GRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFR 324
>gi|218190979|gb|EEC73406.1| hypothetical protein OsI_07661 [Oryza sativa Indica Group]
Length = 731
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 275 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 334
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ I +F VT ++ A C +Y + TC+RG CNF+H R
Sbjct: 335 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFR 380
>gi|26326547|dbj|BAC27017.1| unnamed protein product [Mus musculus]
Length = 428
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 225 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 284
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C +G +CNF+H+ R
Sbjct: 285 GRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFR 324
>gi|6755917|ref|NP_035793.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 [Mus musculus]
gi|2842676|sp|Q64707.1|U2AFL_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein auxiliary factor
35 kDa subunit-related protein 1; AltName: Full=CCCH
type zinc finger, RNA-binding motif and serine/arginine
rich protein 1; AltName: Full=SP2; AltName:
Full=U2(RNU2) small nuclear RNA auxiliary factor 1-like
1
gi|12044258|gb|AAG47771.1|AF309654_1 U2AF small subunit-related protein [Mus musculus]
gi|544778|gb|AAB29564.1| SP2=U2 small nuclear ribonucleoprotein auxiliary factor small
subunit homolog [mice, brain, Peptide, 428 aa]
gi|575893|dbj|BAA04230.1| SP2 [Mus musculus]
gi|1468962|dbj|BAA05486.1| U2AF small subunit-related protein [Mus musculus]
gi|22255349|dbj|BAC07536.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) related
protein [Mus musculus]
gi|124376102|gb|AAI32556.1| Zrsr1 protein [Mus musculus]
gi|148675928|gb|EDL07875.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1,
related sequence 1 [Mus musculus]
gi|223460302|gb|AAI38595.1| Zrsr1 protein [Mus musculus]
Length = 428
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 225 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 284
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C +G +CNF+H+ R
Sbjct: 285 GRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFR 324
>gi|350595997|ref|XP_003360579.2| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Sus scrofa]
Length = 407
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 205 QQFLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 264
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + + PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 265 GRQLQCEICPVTQWKMAICGLFEIQQCPRGKHCNFLHVFR 304
>gi|307200055|gb|EFN80401.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 [Harpegnathos saltator]
Length = 490
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +FYED+ EL YG+I L C N H+ ++ E +A RA K L+GR+YA
Sbjct: 236 QHFREFYEDVITELESYGKISVLRCCCNTETHLRGNLYVEYQTEREATRAWKRLNGRWYA 295
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
G+ + +F + +R A C + C +G CNF+H R R+
Sbjct: 296 GKQLRCEFVNLISWRNAICGM---SKCPKGTACNFLHTFRNPRN 336
>gi|62945360|ref|NP_001017504.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 [Rattus norvegicus]
gi|55778495|gb|AAH86322.1| Zinc finger (CCCH type), RNA binding motif and serine/arginine rich
1 [Rattus norvegicus]
Length = 428
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 226 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 285
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C +G +CNF+H+ R
Sbjct: 286 GRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFR 325
>gi|294875296|ref|XP_002767259.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Perkinsus marinus ATCC 50983]
gi|239868814|gb|EEQ99976.1| U2 small nuclear ribonucleoprotein, auxiliary factor, small
subunit, putative [Perkinsus marinus ATCC 50983]
Length = 235
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 31/95 (32%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIV 84
QEHFE FYE++F EL YG FYAGR I
Sbjct: 76 QEHFEAFYEEVFLELANYG-------------------------------TFYAGRIIQP 104
Query: 85 DFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI 119
++SPVTDF EA CRQ+++ C+RGG+CNF+H K +
Sbjct: 105 EYSPVTDFSEARCRQFDDAQCSRGGFCNFIHWKHV 139
>gi|193788564|ref|NP_001123327.1| zinc finger protein ZF(C3H)-13 [Ciona intestinalis]
gi|93003114|tpd|FAA00140.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 479
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
+ E FE FY+D+F E NK+G +E L +C N H+ + QA A +SL+GRF
Sbjct: 277 LYEDFEVFYDDVFPEFNKFGHVEQLKVCCNRDQHLRGNVYVQYATVSQAETAFQSLNGRF 336
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEEN-TCNRGGYCNFMHL 116
Y G+ + + + + A C Y C RGG+CNF+H+
Sbjct: 337 YGGKLLQCMYVTILSWSSAICGLYCTGRPCPRGGHCNFLHV 377
>gi|395837998|ref|XP_003791914.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Otolemur garnettii]
Length = 493
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY+D+ E G++ + NL H+ ++ EE+ A +GR+YA
Sbjct: 233 QQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQTEEECQTAFSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 332
>gi|345327120|ref|XP_001515642.2| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Ornithorhynchus
anatinus]
Length = 466
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + N H+ ++ EE+ A +GR+YA
Sbjct: 233 QQFLDFYEDVLPEFKNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQEAFSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 293 GRQLQCEFCPVTRWKMAICGLFERQKCPRGKHCNFLHVFR 332
>gi|148708819|gb|EDL40766.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1,
related sequence 2 [Mus musculus]
Length = 498
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFY D+ E G++ + NL H+ ++ EE A +GR
Sbjct: 192 EIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGR 251
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS----RDLRRQLF 128
+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R RD R L+
Sbjct: 252 WYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRDLY 308
>gi|121949800|ref|NP_033479.2| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 isoform 1 [Mus musculus]
gi|162319138|gb|AAI56405.1| Zinc finger (CCCH type), RNA binding motif and serine/arginine rich
2 [synthetic construct]
gi|225000398|gb|AAI72696.1| Zinc finger (CCCH type), RNA binding motif and serine/arginine rich
2 [synthetic construct]
Length = 541
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
I + F DFY D+ E G++ + NL H+ ++ EE A +GR+
Sbjct: 236 IYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRW 295
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS----RDLRRQLF 128
YAGR + +F PVT ++ A C +E C RG +CNF+H+ R RD R L+
Sbjct: 296 YAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFRNPNNEYRDANRDLY 351
>gi|351696721|gb|EHA99639.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 [Heterocephalus glaber]
Length = 511
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 254 QQFLDFYHDVVPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECHAALSLFNGRWYA 313
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 314 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 353
>gi|2842648|sp|Q62377.1|U2AFM_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein auxiliary factor
35 kDa subunit-related protein 2; AltName: Full=CCCH
type zinc finger, RNA-binding motif and serine/arginine
rich protein 2; AltName: Full=U2(RNU2) small nuclear RNA
auxiliary factor 1-like 2; AltName: Full=U2AF35-related
protein; Short=URP
gi|927659|dbj|BAA08143.1| U2af1-rs2 [Mus musculus]
Length = 462
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFY D+ E G++ + NL H+ ++ EE A +GR
Sbjct: 235 EIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGR 294
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 295 WYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFR 337
>gi|291239418|ref|XP_002739620.1| PREDICTED: U2 small nuclear RNA auxiliary factor 1-like 2-like,
partial [Saccoglossus kowalevskii]
Length = 641
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D + F FY+D+ E GE+ +C N H+ + E++ ++A+
Sbjct: 89 FDEKDAYADFLSFYDDVLGEFRALGEVIQFKVCCNWEPHLRGNVYVQYNSEDECSKAISM 148
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
+GR+YAG+ + + P+T ++ A C + + C +G +CNF+H+
Sbjct: 149 FNGRYYAGKQLTCLYCPITKWKSAICGLFAKKRCPKGKHCNFLHV 193
>gi|431909774|gb|ELK12920.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 [Pteropus alecto]
Length = 461
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM---------FREEEQAARALKSLSGRF 76
+ F DFYED+ E G++ + N+ H+ EE QAAR+L +GR+
Sbjct: 229 QQFLDFYEDVLPEFRNVGKVVQFKVSCNMEPHLRGNVYVQYQSEEECQAARSL--FNGRW 286
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 287 YAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFR 328
>gi|363543273|ref|NP_001241852.1| RGH3 splicing factor [Zea mays]
gi|330470888|gb|AEC32092.1| RGH3 splicing factor [Zea mays]
gi|356609668|gb|AET25330.1| RGH3/ZmURP alpha protein isoform [Zea mays]
gi|359392836|gb|AEV45825.1| rough endosperm 3 alpha isoform [Zea mays]
Length = 755
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 10/114 (8%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
+G +I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A
Sbjct: 271 EGLEFTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSFHLRGNVYVHYKSLDSALL 330
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
A S++GR++AG+ I +F VT ++ A C +Y + TC+ G CNF+H R
Sbjct: 331 AYSSMNGRYFAGKQITCEFVAVTRWKAAICGEYMRSRYKTCSHGVACNFIHCFR 384
>gi|359392832|gb|AEV45823.1| rough endosperm 3-umu1 alpha isoform [Zea mays]
Length = 790
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 10/114 (8%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
+G +I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A
Sbjct: 306 EGLEFTDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSFHLRGNVYVHYKSLDSALL 365
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
A S++GR++AG+ I +F VT ++ A C +Y + TC+ G CNF+H R
Sbjct: 366 AYSSMNGRYFAGKQITCEFVAVTRWKAAICGEYMRSRYKTCSHGVACNFIHCFR 419
>gi|354498940|ref|XP_003511570.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Cricetulus griseus]
Length = 537
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE A +GR+YA
Sbjct: 282 QQFLDFYHDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSLFNGRWYA 341
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 342 GRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFR 381
>gi|340374312|ref|XP_003385682.1| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Amphimedon
queenslandica]
Length = 466
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 9/110 (8%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
G +D + + F++FY+D+F E K+GE+ + N H+ + EE A A
Sbjct: 161 GLEMDDEDMLKDFKEFYQDVFPEFEKFGEVVQFKVSCNYESHLRGNLYVQYSTEEACAAA 220
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQY--EENTCNRGGYCNFMHL 116
+K +GR+YAG+ + ++ PV ++ A C ++ + + C +G +CNF+H+
Sbjct: 221 IKQFNGRYYAGKQLSCEYCPVEKWKTAICGEFLKQGSQCPKGKHCNFLHV 270
>gi|432851674|ref|XP_004067028.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Oryzias latipes]
Length = 591
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
+ E F +FY D+ E G++ +C N H+ F ++Q AL +GR+
Sbjct: 237 LHESFLEFYHDVLPEFKSVGKVVQFKVCCNYEPHLKGNVYIQFETDDQCKEALMKFNGRW 296
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YAGR + + SPVT ++ A C ++ C +G +CNF+H+ R
Sbjct: 297 YAGRQLQCEISPVTRWKNAICGLFDRRKCPKGKHCNFLHVFR 338
>gi|340056926|emb|CCC51265.1| putative U2 splicing auxiliary factor [Trypanosoma vivax Y486]
Length = 239
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
++ HFE FY++ + + G I L + NL DH+ F E AAR ++ L +
Sbjct: 63 LRRHFEHFYKETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEESSDAARIVRELKAKK 122
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
++ + SPVT+F +A C++ E C RG CN++H+ ++SR L +L
Sbjct: 123 LNEIILLPEISPVTNFADACCKEDLEGKCERGTQCNYLHIMKVSRKLMDKL 173
>gi|326523703|dbj|BAJ93022.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 495
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 6 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSFHLRGNVYVHYKALDSALLAYNSMNGR 65
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ I +F +T ++ A C +Y + TC+ G CNF+H R
Sbjct: 66 YFAGKQITCEFVALTKWKSAICGEYMRSRFKTCSHGVACNFIHCFR 111
>gi|71747034|ref|XP_822572.1| U2 splicing auxiliary factor [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832240|gb|EAN77744.1| U2 splicing auxiliary factor, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261332325|emb|CBH15319.1| U2 splicing auxiliary factor, putative [Trypanosoma brucei
gambiense DAL972]
Length = 247
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
++ HFE FY++ + + G I L + NL DH+ F + A+R ++ L +
Sbjct: 63 LRRHFEHFYKETWRTFMELGRIAELRVVSNLGDHLLGNVYIRFEDSHDASRIVRELKAKK 122
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
++ + SPVT+F EA C++ E C RG CN++H+ ++SR L +L
Sbjct: 123 LNDIVLLPELSPVTNFAEACCKEDLEGKCERGPQCNYLHIMKVSRKLMEKL 173
>gi|449483114|ref|XP_002194245.2| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Taeniopygia guttata]
Length = 644
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F +FYED+ E G++ + N H+ ++ E+ AL SGR+YA
Sbjct: 406 QQFLEFYEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQSEKDCQAALALFSGRWYA 465
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
GR + +F PVT ++ A C +E C RG +CNF+H+
Sbjct: 466 GRQLHCEFCPVTRWKTAICGLFERQKCPRGKHCNFLHV 503
>gi|449270924|gb|EMC81567.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2, partial [Columba livia]
Length = 453
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F +FYED+ E G++ + N H+ ++ E+ AL SGR+YA
Sbjct: 221 QQFLEFYEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQSEKDCQAALALFSGRWYA 280
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL-KRISRDL 123
GR + +F PVT ++ A C +E C RG +CNF+H+ K S DL
Sbjct: 281 GRQLHCEFCPVTRWKTAICGLFERQKCPRGKHCNFLHVFKNPSNDL 326
>gi|357142577|ref|XP_003572619.1| PREDICTED: zinc finger CCCH domain-containing protein 16-like
[Brachypodium distachyon]
Length = 748
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 265 EVEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSFHLRGNVYVHYKSLDSALLAYNSMNGR 324
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ I +F VT ++ A C +Y + TC+ G CNF+H R
Sbjct: 325 YFAGKQITCEFVAVTKWKAAICGEYMRSRFKTCSHGVACNFIHCFR 370
>gi|293350806|ref|XP_001067753.2| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Rattus norvegicus]
gi|293362880|ref|XP_217612.5| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Rattus norvegicus]
Length = 541
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE A +GR+YA
Sbjct: 234 QQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFR 333
>gi|15218489|ref|NP_172503.1| zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana]
gi|229621703|sp|Q9SY74.2|C3H5_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 5;
Short=AtC3H5
gi|332190444|gb|AEE28565.1| zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana]
Length = 757
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
+E+FYED+ E KYGE+ + +C N + H+ +R E A A +S++GR++AG+
Sbjct: 304 YEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGK 363
Query: 81 PIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
+ +F ++ ++ A C +Y ++ TC+RG CNF+H R
Sbjct: 364 QVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFR 404
>gi|301617734|ref|XP_002938300.1| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Xenopus (Silurana)
tropicalis]
Length = 529
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
I + F +FY D+ E G++ + N H+ ++ EE+ +A +GR+
Sbjct: 221 IYQQFLEFYADVVPEFKNAGKVVQFKVSCNFEPHLRGNVYVQYQTEEECLKAFTQFNGRW 280
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
YA R + +FSPVT ++ A C +E C RG +CNF+H+
Sbjct: 281 YASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHV 320
>gi|383865202|ref|XP_003708064.1| PREDICTED: uncharacterized protein LOC100879762 [Megachile
rotundata]
Length = 620
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +FY+D+ EL +G I++L C N H+ + E +AARAL+ L GR+YA
Sbjct: 238 QHFREFYKDVVPELESFGRIKTLKYCCNTEIHLRGNLYVEYYTEREAARALRRLKGRWYA 297
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMH 115
GR + +F + +R A C + C +G CNF+H
Sbjct: 298 GRQLNCEFVNLKSWRSAVCGM---SKCPKGRACNFLH 331
>gi|344288699|ref|XP_003416084.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Loxodonta africana]
Length = 532
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F +FY+D+ E G++ + N H+ ++ EE+ AL +GR+YA
Sbjct: 283 QQFLEFYDDVLPEFRNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAALSVFNGRWYA 342
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 343 GRQLQCEFCPVTRWQMAICGLFETQQCPRGKHCNFLHVFR 382
>gi|449330260|gb|AGE96520.1| u2 snrnp auxiliary factor small subunit [Encephalitozoon cuniculi]
Length = 254
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARA 68
+ L +Q H + FYED F EL+ KYG I L I N + F EEE A R
Sbjct: 51 STLGEESVQIHLDLFYEDWFTELSVKYGAIRKLVIASNSCIQILGNIYIEFHEEEAAMRC 110
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ + R+Y G+ I+ + + TC ++E C +G C F+H R+SR L +L
Sbjct: 111 AEEIGRRYYGGKRIVAELGNCYRTDDGTCTEHERGLCGKGEKCGFIHAARVSRSLVEELL 170
Query: 129 GRYRRRHSRSRSRSR 143
+ R+ +R
Sbjct: 171 ASQALLYPRTSDANR 185
>gi|149035842|gb|EDL90509.1| similar to U2af1-rs2 (predicted) [Rattus norvegicus]
Length = 337
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE A +GR+YA
Sbjct: 30 QQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYA 89
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 90 GRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFR 129
>gi|85014399|ref|XP_955695.1| U2 small nuclear RNA auxillary factor [Encephalitozoon cuniculi
GB-M1]
gi|19171389|emb|CAD27114.1| U2 snRNP AUXILIARY FACTOR SMALL SUBUNIT (SPLICING FACTOR U2AF)
[Encephalitozoon cuniculi GB-M1]
Length = 254
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARA 68
+ L +Q H + FYED F EL+ KYG I L I N + F EEE A R
Sbjct: 51 STLGEESVQIHLDLFYEDWFTELSVKYGAIRKLVIASNSCIQILGNIYIEFHEEEAAMRC 110
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
+ + R+Y G+ I+ + + TC ++E C +G C F+H R+SR L +L
Sbjct: 111 AEEIGRRYYGGKRIVAELGNCYRTDDGTCTEHERGLCGKGEKCGFIHAARVSRSLVEELL 170
Query: 129 GRYRRRHSRSRSRSR 143
+ R+ +R
Sbjct: 171 ASQALLYPRTSDANR 185
>gi|363728701|ref|XP_425572.3| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Gallus gallus]
Length = 473
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F +FYED+ E G++ + N H+ ++ E+ AL SGR+YA
Sbjct: 235 QQFLEFYEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQTEKDCQAALALFSGRWYA 294
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
GR + +F PVT ++ A C +E C RG +CNF+H+
Sbjct: 295 GRQLHCEFCPVTRWKTAICGLFERQKCPRGKHCNFLHV 332
>gi|334346699|ref|XP_001380936.2| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Monodelphis
domestica]
Length = 466
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + N H+ ++ EE+ A +GR+YA
Sbjct: 233 QQFLDFYEDVLPEFKNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAAFSLFNGRWYA 292
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +FSPVT ++ A C + C RG +CNF+H+ R
Sbjct: 293 GRQLQCEFSPVTRWKMAICGLFGRQKCPRGKHCNFLHVFR 332
>gi|401828573|ref|XP_003888000.1| hypothetical protein EHEL_091240 [Encephalitozoon hellem ATCC
50504]
gi|392999008|gb|AFM99019.1| hypothetical protein EHEL_091240 [Encephalitozoon hellem ATCC
50504]
Length = 257
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 11/186 (5%)
Query: 19 LDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALK 70
L +Q H + FYED F E++ KYG + L I N++ + F EE A R ++
Sbjct: 53 LSKDAVQIHLDLFYEDWFSEMSVKYGAVRMLAIASNISPQLLGNIYIEFEEERAALRCME 112
Query: 71 SLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
+ R+Y G+ I+V+ + C +E++ C +G C F+H+ + + L +L
Sbjct: 113 EIGKRYYCGKRIVVELGNCYRISDGVCTDHEKDLCAKGERCGFIHVAKATASLVEELLAS 172
Query: 131 YRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD-DRDKYYESRSRRHRSTSPSHRRGRS 189
R +++ S ++ R+ +++ G D +R + Y + RR S + R
Sbjct: 173 QRLLYTQIGSMGKNRPDERNITSQANWVEGSLRDGNRIENYHADRRRLESQENAKR--SK 230
Query: 190 RSPGGR 195
R P GR
Sbjct: 231 RMPTGR 236
>gi|189525066|ref|XP_001920562.1| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Danio rerio]
Length = 635
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++ + F DFYED E G + + N H+ + EEQ A +GR
Sbjct: 244 ELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEEQCKEAFVMFNGR 303
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +FSPVT ++ A C ++ C +G +CNF+H+ R
Sbjct: 304 WYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHVFR 346
>gi|255573856|ref|XP_002527847.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
gi|223532771|gb|EEF34550.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis]
Length = 857
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+++ +E+FYED+ E KYGEI + +C N + H+ ++ + A A S++GR
Sbjct: 274 EVERSYEEFYEDVHTEFLKYGEIVNFKVCKNSSFHLRGNVYVQYKSLDSAVLAYCSINGR 333
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ + +F VT ++ A C +Y ++ C+RG CNF+H R
Sbjct: 334 YFAGKQVNCEFVNVTRWKVAICGEYMKSRLQMCSRGTACNFIHCFR 379
>gi|395526914|ref|XP_003765599.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2 [Sarcophilus harrisii]
Length = 470
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + N H+ ++ EE+ A +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNFEPHLRGNVYVQYQSEEECQAAFSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +FSPVT ++ A C + C RG +CNF+H+ R
Sbjct: 294 GRQLQCEFSPVTRWKMAICGLFGRQKCPRGKHCNFLHVFR 333
>gi|297849356|ref|XP_002892559.1| hypothetical protein ARALYDRAFT_471143 [Arabidopsis lyrata subsp.
lyrata]
gi|297338401|gb|EFH68818.1| hypothetical protein ARALYDRAFT_471143 [Arabidopsis lyrata subsp.
lyrata]
Length = 772
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
+E+FYED+ E KYGE+ + +C N + H+ +R E A A +S++GR++AG+
Sbjct: 304 YEEFYEDVHTEFLKYGELINFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGK 363
Query: 81 PIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
+ +F ++ ++ A C +Y ++ TC+RG CNF+H R
Sbjct: 364 QVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFR 404
>gi|449432946|ref|XP_004134259.1| PREDICTED: uncharacterized protein LOC101216050 [Cucumis sativus]
Length = 867
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
+G +++ +E+FY+D+ E KYGEI + +C N + H+ ++ + A
Sbjct: 266 EGLEFTDEEVERCYEEFYDDVHTEFLKYGEIVNFKVCKNGSFHLRGNLYVHYKSVDSAVL 325
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
A + +GRFYAG+ II +F VT ++ A C ++ + TC+ G CNF+H R
Sbjct: 326 AYNANNGRFYAGKQIICEFINVTRWKIAICGEFMKTRYKTCSHGTACNFIHCFR 379
>gi|380019200|ref|XP_003693502.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
auxiliary factor 35 kDa subunit-related protein 1-like
[Apis florea]
Length = 459
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +FY+D+ EL +G I++L C N H+ + E +AARAL+ L GR+YA
Sbjct: 238 QHFREFYKDVVPELESFGRIKTLKYCCNTEVHLRGNLYVEYYTEREAARALRRLKGRWYA 297
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMH 115
GR + +F + +R A C + C +G CNF+H
Sbjct: 298 GRQLNCEFVNLKSWRSAVCGM---SKCPKGRACNFLH 331
>gi|348541563|ref|XP_003458256.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Oreochromis
niloticus]
Length = 595
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++QE F +FY D+ E G++ + N H+ F EEQ A +GR
Sbjct: 237 EMQESFLEFYHDVLPEFKSVGKVLQFKVSCNYEPHLRGNVYVQFDTEEQCKEAFIKFNGR 296
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + + SPVT ++ A C ++ + C +G +CNF+H+ R
Sbjct: 297 WYAGRQLHCEISPVTRWKNAICGLFDRHRCPKGKHCNFLHVFR 339
>gi|328789326|ref|XP_392139.2| PREDICTED: u2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 1-like [Apis mellifera]
Length = 455
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +FY+D+ EL +G I++L C N H+ + E +AARAL+ L GR+YA
Sbjct: 238 QHFREFYKDVVPELESFGRIKTLKYCCNTEVHLRGNLYVEYYTEREAARALRRLKGRWYA 297
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMH 115
GR + +F + +R A C + C +G CNF+H
Sbjct: 298 GRQLNCEFVNLKSWRSAVCGM---SKCPKGRACNFLH 331
>gi|350422847|ref|XP_003493303.1| PREDICTED: hypothetical protein LOC100742355 [Bombus impatiens]
Length = 638
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +FY+D+ EL +G+I++L C N H+ + E +AARAL+ L GR+YA
Sbjct: 247 QHFREFYKDVVPELESFGKIKTLKYCCNTEVHLRGNLYVEYYTEREAARALRRLKGRWYA 306
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMH 115
GR + +F + +R A C + C +G CNF+H
Sbjct: 307 GRQLNCEFVNLRSWRSAVCGM---SKCPKGRACNFLH 340
>gi|449478305|ref|XP_004155279.1| PREDICTED: zinc finger CCCH domain-containing protein 5-like
[Cucumis sativus]
Length = 838
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
+G +++ +E+FY+D+ E KYGEI + +C N + H+ ++ + A
Sbjct: 266 EGLEFTDEEVERCYEEFYDDVHTEFLKYGEIVNFKVCKNGSFHLRGNLYVHYKSVDSAVL 325
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
A + +GRFYAG+ II +F VT ++ A C ++ + TC+ G CNF+H R
Sbjct: 326 AYNANNGRFYAGKQIICEFINVTRWKIAICGEFMKTRYKTCSHGTACNFIHCFR 379
>gi|340715501|ref|XP_003396250.1| PREDICTED: hypothetical protein LOC100645560 [Bombus terrestris]
Length = 629
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +FY+D+ EL +G I++L C N H+ + E +AARAL+ L GR+YA
Sbjct: 238 QHFREFYKDVVPELESFGRIKTLKYCCNTEVHLRGNLYVEYYTEREAARALRRLKGRWYA 297
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMH 115
GR + +F + +R A C + C +G CNF+H
Sbjct: 298 GRQLNCEFVNLRSWRSAVCGM---SKCPKGRACNFLH 331
>gi|4827046|ref|NP_005080.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 [Homo sapiens]
gi|2833266|sp|Q15696.2|U2AFM_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein auxiliary factor
35 kDa subunit-related protein 2; AltName: Full=CCCH
type zinc finger, RNA-binding motif and serine/arginine
rich protein 2; AltName: Full=Renal carcinoma antigen
NY-REN-20; AltName: Full=U2(RNU2) small nuclear RNA
auxiliary factor 1-like 2; AltName: Full=U2AF35-related
protein; Short=URP
gi|1808582|dbj|BAA08533.1| U2AF1-RS2 [Homo sapiens]
gi|109731267|gb|AAI13455.1| Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich
2 [Homo sapiens]
gi|109731281|gb|AAI13481.1| Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich
2 [Homo sapiens]
gi|119619306|gb|EAW98900.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 2, isoform CRA_a
[Homo sapiens]
gi|313883686|gb|ADR83329.1| zinc finger (CCCH type), RNA-binding motif and serine/arginine rich
2 [synthetic construct]
Length = 482
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR----DLRRQLFGRYRRR 134
GR + +F PVT ++ A C +E C RG +CNF+H+ R + R ++ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRT 353
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYY------ESRSRRHRS------TSP 182
S S R H+D GRR D Y E +S RHR TS
Sbjct: 354 GSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSK 413
Query: 183 SHRR 186
S R
Sbjct: 414 SRER 417
>gi|297739459|emb|CBI29641.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Query: 17 NPL-DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARA 68
NPL +++ +E+FYED+ E K+GEI + +C N + H+ ++ + A A
Sbjct: 276 NPLYTDEEVERCYEEFYEDVQTEFLKFGEIVNFKVCRNGSFHLRGNVYVHYKSLDSAVLA 335
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
S++G +YAG+ + +F VT ++ A C +Y ++ TC+ G CNF+H R
Sbjct: 336 YHSINGLYYAGKQVTCEFVGVTRWKVAICGEYMKSRFKTCSHGTACNFIHCFR 388
>gi|119619308|gb|EAW98902.1| U2(RNU2) small nuclear RNA auxiliary factor 1-like 2, isoform CRA_c
[Homo sapiens]
Length = 344
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 96 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 155
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR----DLRRQLFGRYRRR 134
GR + +F PVT ++ A C +E C RG +CNF+H+ R + R ++ R
Sbjct: 156 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRT 215
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYY------ESRSRRHRS------TSP 182
S S R H+D GRR D Y E +S RHR TS
Sbjct: 216 GSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSK 275
Query: 183 SHRR 186
S R
Sbjct: 276 SRER 279
>gi|344288487|ref|XP_003415981.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Loxodonta africana]
Length = 489
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F +FY+D+ E G++ + N H+ ++ EE+ A +GR+YA
Sbjct: 220 QQFLEFYDDVLPEFKNVGKVIQFKVSCNSEPHLRGNVYVQYQSEEECQAAHSLFNGRWYA 279
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A CR +E C RG +CNF+H+ R
Sbjct: 280 GRQLQCEFCPVTRWQMAICRVFETQQCPRGKHCNFLHVFR 319
>gi|332026662|gb|EGI66771.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 [Acromyrmex echinatior]
Length = 478
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HF +FYED+ EL +G I++L C N H+ + E +AARA ++L GR+YAG
Sbjct: 239 HFYEFYEDVITELESFGRIKTLKCCCNKEIHLRGNVYVEYYTEREAARAWRNLKGRWYAG 298
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGG-YCNFMH 115
+ + +F T +R A C N C +G +CNF+H
Sbjct: 299 KQLNCEFVNFTSWRGAVCGI---NKCPKGSKFCNFLH 332
>gi|224129496|ref|XP_002328731.1| predicted protein [Populus trichocarpa]
gi|222839029|gb|EEE77380.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+++ +E+FYED+ E KYGEI + +C N + H+ ++ + A A S++GR
Sbjct: 22 EVECSYEEFYEDVHTEFLKYGEIVNFKVCKNGSFHLRGNVYVHYKSLDSAILAYHSINGR 81
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ + +F +T ++ A C ++ ++ TC+ G CNF+H R
Sbjct: 82 YFAGKQVKCEFINLTRWKVAICGEFMKSRLKTCSHGSACNFIHCFR 127
>gi|140053486|gb|ABO80461.1| Concanavalin A-like lectin/glucanase; U2 auxiliary factor small
subunit [Medicago truncatula]
Length = 584
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
++ FE+FYED+ E K+GEI + +C N + H+ ++ + A A S++GR+
Sbjct: 9 VERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRY 68
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
+AG+ + F +T ++ A C +Y ++ TC+ G CNF+H R
Sbjct: 69 FAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFR 113
>gi|449680951|ref|XP_002158120.2| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Hydra
magnipapillata]
Length = 403
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSL 72
D + FE FY+D+ E G + C N H+ +++ A RALK
Sbjct: 112 DEVDLIHEFEKFYDDVIGEFRAAGTVVMFKCCQNYVPHLRGNVYVQYQDHNGALRALKMF 171
Query: 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL--------- 123
+GR+YAGR + V+ SPVT+++ + C +++ C RG CNF+H+ R +
Sbjct: 172 NGRWYAGRQLSVELSPVTNWKSSICGLFDKRLCPRGKACNFLHVFRNPGNAYSVPNRTDF 231
Query: 124 ---RRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDK--YYESRSRRHR 178
R G Y + + Y R SG+G R +D K Y +S + HR
Sbjct: 232 DPERATKTGGYDPKFVNPNHPVFAYYSKRD------SGYGYRREDALKHDYSKSSTSSHR 285
Query: 179 STS 181
++
Sbjct: 286 RSA 288
>gi|410912868|ref|XP_003969911.1| PREDICTED: U2 small nuclear ribonucleoprotein auxiliary factor 35
kDa subunit-related protein 2-like [Takifugu rubripes]
gi|4741995|gb|AAD28792.1|AF146688_1 U2 small nuclear ribonucleoprotein auxiliary factor subunit-related
protein [Takifugu rubripes]
Length = 605
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++ E F +FY D+ E G++ + N H+ F EEQ A +GR
Sbjct: 233 ELYESFLEFYHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGR 292
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDLR--- 124
+YAGR + + PVT ++ A C ++ C +G +CNF+H+ R RDL
Sbjct: 293 WYAGRQLHCEMCPVTRWKNAICGLFDRQKCPKGKHCNFLHVFRNPGKEFWEADRDLHMSP 352
Query: 125 -RQLFGRYRR-RHSR------SRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRR 176
R + G R RHS R SRSP RS H RR DR + SRSR
Sbjct: 353 DRSVRGSQRDGRHSERYGDRWQRRCSRSP-------PRSERSHSRRAGDR---WSSRSRE 402
Query: 177 HRSTSP 182
+ P
Sbjct: 403 SAMSHP 408
>gi|225465261|ref|XP_002268270.1| PREDICTED: uncharacterized protein LOC100247160 [Vitis vinifera]
Length = 887
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+++ +E+FYED+ E K+GEI + +C N + H+ ++ + A A S++G
Sbjct: 259 EVERCYEEFYEDVQTEFLKFGEIVNFKVCRNGSFHLRGNVYVHYKSLDSAVLAYHSINGL 318
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
+YAG+ + +F VT ++ A C +Y ++ TC+ G CNF+H R
Sbjct: 319 YYAGKQVTCEFVGVTRWKVAICGEYMKSRFKTCSHGTACNFIHCFR 364
>gi|357445231|ref|XP_003592893.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355481941|gb|AES63144.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
Length = 1146
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
++ FE+FYED+ E K+GEI + +C N + H+ ++ + A A S++GR+
Sbjct: 11 VERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRY 70
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
+AG+ + F +T ++ A C +Y ++ TC+ G CNF+H R
Sbjct: 71 FAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFR 115
>gi|443697246|gb|ELT97781.1| hypothetical protein CAPTEDRAFT_161525 [Capitella teleta]
Length = 346
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
+ HF +FYED+ E G + +C N H+ + E A R L + +GR+
Sbjct: 28 VMRHFREFYEDVTPEFRALGRLVQFKVCCNYEPHLRGNVYIQYESESDAERCLSAFNGRW 87
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
YAGR + +S VT ++ A C + C +G CNF+H+
Sbjct: 88 YAGRQLSCQYSAVTQWKNAICGLFSRKKCPKGRACNFLHV 127
>gi|15988329|pdb|1JMT|A Chain A, X-Ray Structure Of A Core U2af65U2AF35 HETERODIMER
Length = 104
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 31 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 90
Query: 75 RFYAGRPIIVDFSP 88
R++ G+PI + SP
Sbjct: 91 RWFNGQPIHAELSP 104
>gi|260796659|ref|XP_002593322.1| hypothetical protein BRAFLDRAFT_119587 [Branchiostoma floridae]
gi|229278546|gb|EEN49333.1| hypothetical protein BRAFLDRAFT_119587 [Branchiostoma floridae]
Length = 571
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F +FY D E G + +C N H+ + EE A++ GRFYAG+
Sbjct: 194 FIEFYNDTLPEFRTLGRVVQFKVCCNHEPHLRGNVYVQYEREEDCLEAIRKFHGRFYAGK 253
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
+ + +PVT ++ A C + C +G +CNF+H+
Sbjct: 254 QLTCEMTPVTSWKSAICGLFSRKRCPKGKHCNFLHV 289
>gi|356528629|ref|XP_003532902.1| PREDICTED: zinc finger CCCH domain-containing protein 5-like
[Glycine max]
Length = 587
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+++ FE+FYED+ E K+GEI + +C N + H+ ++ + A A +++GR
Sbjct: 231 EVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSLDSALLAYNTVNGR 290
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ + F +T ++ A C +Y ++ TC+ G CNF+H R
Sbjct: 291 YFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTTCNFIHCFR 336
>gi|322795207|gb|EFZ18029.1| hypothetical protein SINV_09275 [Solenopsis invicta]
Length = 470
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 108/209 (51%), Gaps = 24/209 (11%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+HF +F+ED+ EL +G I+ + C N+ H+ + E +AARA ++L GR+Y
Sbjct: 230 QHFYEFFEDVITELESFGRIKVIKCCRNMEVHLRGNLYVEYYTEREAARAWRNLKGRWYG 289
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGG-YCNFMHLKRISRDLRRQLFGRYRRRHSR 137
G+ + +F + + A C + C +G YCNF+H + RY + +
Sbjct: 290 GKRLHCEFVNLISWGGAICGIAQ---CPKGTKYCNFLH-------TFKNPCNRYDIKKPQ 339
Query: 138 SRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHR-STSPSHRRGRSRSPGGRR 196
R+ ++ +++ ++ RS G+ +++ D+ R+R R S SP GR++ +
Sbjct: 340 -RTNTKDSFKNPNNSKRSEHGNKSNWEEFDRDDGERNRNWRWSESPETELGRAKDSETKH 398
Query: 197 YHSPVREGSEERRAKIEQWNREREQQEEA 225
+HS R ++R + ++++R+R Q+ +A
Sbjct: 399 HHSTKR----DKRERSKRFSRDRSQRRDA 423
>gi|302785351|ref|XP_002974447.1| hypothetical protein SELMODRAFT_18213 [Selaginella moellendorffii]
gi|300158045|gb|EFJ24669.1| hypothetical protein SELMODRAFT_18213 [Selaginella moellendorffii]
Length = 56
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
L+GRFY+GR I + SPVTDFREA+CRQ E+ C+RG CNF+ L SR L R L
Sbjct: 1 LNGRFYSGRSIAAELSPVTDFREASCRQEEQGGCSRGRCCNFLDLYHPSRALMRAL 56
>gi|356555094|ref|XP_003545874.1| PREDICTED: zinc finger CCCH domain-containing protein 5-like
[Glycine max]
Length = 518
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+++ FE+FYED+ E K+GE+ + +C N + H ++ + A A S++GR
Sbjct: 242 EVERCFEEFYEDVHTEFLKFGEVVNFKVCKNGSFHWRGNVYVQYKSLDSALLAYNSVNGR 301
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ + F +T ++ A C +Y ++ TC+ G CNF+H R
Sbjct: 302 YFAGKQVSCQFVNLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFR 347
>gi|270006539|gb|EFA02987.1| hypothetical protein TcasGA2_TC010403 [Tribolium castaneum]
Length = 347
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HF+DF+ D+ E+ ++G I +C N H+ + +A ++ + +GR+Y G
Sbjct: 229 HFKDFFFDVLPEMERFGRIRQFKVCCNRESHLRGNVYVEYSTTREAVKSFQVFNGRWYGG 288
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
R + V+F + ++ A C + C +G CNF+H+
Sbjct: 289 RQLSVEFCNIESWKSAICGLHSRKKCPKGSSCNFLHV 325
>gi|123474570|ref|XP_001320467.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903273|gb|EAY08244.1| hypothetical protein TVAG_404120 [Trichomonas vaginalis G3]
Length = 225
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 22 RKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
R +Q + F+ D++ E ++G ++ + I NL +H+ F E ++A K+L G
Sbjct: 85 RNLQSMIDSFFLDVYAEFKQFGNVQDIVIASNLTEHLYGNVYVRFNEPDEALACHKALQG 144
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGR 130
RFYAGR + C + C G C ++H +ISRD+ Q F R
Sbjct: 145 RFYAGRKVTSSLIFFDKLSSLICVSKQSGKCFHGQCCPYVHPLQISRDVFNQAFPR 200
>gi|123455079|ref|XP_001315287.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897959|gb|EAY03064.1| hypothetical protein TVAG_171620 [Trichomonas vaginalis G3]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLAD------HMFREEEQAAR-ALKSLSGRFY 77
Q + + F+ D+F ++G IE L +C N D ++F E+ AR AL +L G++Y
Sbjct: 70 QRYIDAFFLDMFLMCRRFGAIEDLLLCSNTMDCLSGNFYVFYEQSDCARMALTALDGQYY 129
Query: 78 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSR 137
AGR + V V + A C+ + C+RG C F+H S L +++ R +
Sbjct: 130 AGRKVHVTLCSVPRYSTALCKSSMKGECSRGNECAFIHALEPSFALYQEVIPRINKLFPS 189
Query: 138 SRSRSRSP 145
+ + P
Sbjct: 190 AFRKPGDP 197
>gi|357617275|gb|EHJ70693.1| hypothetical protein KGM_02050 [Danaus plexippus]
Length = 392
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F++F+ D+ E K+G++ + +C+N H+ + + A A ++L R+Y G+
Sbjct: 225 FKEFFFDILPEFQKFGQVVEIKVCNNFEKHLRGNTYIEYSDVRSAVSAYRALHTRWYGGK 284
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
+ + F + + A C C +G CNF+H+ + DL RY +R + S
Sbjct: 285 QLSLQFCRLLSWSSAICGLQVTGRCPKGRACNFLHVFKNPIDLHIAYEKRYSKRQQHTSS 344
Query: 141 RSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGRSRS 191
RS S E S + +R D D + +SR RRH HR RSRS
Sbjct: 345 RSWR--WSESPERESPTSRSKRKD--DGHSKSRERRHY----QHRSPRSRS 387
>gi|198475533|ref|XP_001357071.2| GA17206 [Drosophila pseudoobscura pseudoobscura]
gi|198138864|gb|EAL34137.2| GA17206 [Drosophila pseudoobscura pseudoobscura]
Length = 448
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAAR 67
+G + ++ +++F+ D EL K+G+I + N ++L+ H+F E E+ A R
Sbjct: 222 EGLEMTEHDLRSDYDEFFNDAVTELEKFGKIVNFRALRNTLEHLSGHVFVEYANEKCALR 281
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +L GR+YA R + V+FS + +R A C C +G C ++HL R +L
Sbjct: 282 AFINLQGRYYASRRLNVEFSNLHTWRGAVCGLSLTRKCPKGNSCGYLHLFRNPNNL 337
>gi|195159884|ref|XP_002020806.1| GL14474 [Drosophila persimilis]
gi|194117756|gb|EDW39799.1| GL14474 [Drosophila persimilis]
Length = 448
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAAR 67
+G + ++ +++F+ D EL K+G+I + N ++L+ H+F E E+ A R
Sbjct: 222 EGLEMTEHDLRSDYDEFFNDAVTELEKFGKIVNFRALRNTLEHLSGHVFVEYANEKCALR 281
Query: 68 ALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL 123
A +L GR+YA R + V+FS + +R A C C +G C ++HL R +L
Sbjct: 282 AFINLQGRYYASRRLNVEFSNLHTWRGAVCGLSLTRKCPKGNSCGYLHLFRNPNNL 337
>gi|157141689|ref|XP_001647741.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
related-protein 2 [Aedes aegypti]
gi|108867907|gb|EAT32409.1| AAEL015434-PA, partial [Aedes aegypti]
Length = 296
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 10 PGVDAQGNP---------LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
P +D Q +P D ++ + +F+ D+ EE +G I + N H+
Sbjct: 11 PALDHQQHPEYGLDSSIEFDDDELYRSYTEFFMDVIEEFESFGPISGFFVTRNFEPHLRG 70
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
+ + AA+A + ++GRFYA + + V+F + A C +E + C +G CN+
Sbjct: 71 NVYVQYEKVRDAAKAYQRMNGRFYASKQLRVEFRAPIVWTAAVCGLFERSRCQKGKSCNY 130
Query: 114 MHL 116
+HL
Sbjct: 131 LHL 133
>gi|390478473|ref|XP_003735517.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
auxiliary factor 35 kDa subunit-related protein 1-like
[Callithrix jacchus]
Length = 458
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 84/212 (39%), Gaps = 41/212 (19%)
Query: 17 NPLDPRKIQE--------HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FRE 61
N DP I E F DFYED+ E G + L + NL H+ ++
Sbjct: 215 NDYDPDAILEDSKEETYPQFLDFYEDVLPEFKNVGRVIQLRVSCNLKPHLRGNIYVHYQL 274
Query: 62 EEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--- 118
E + AL + R+Y G + +F PV ++ A C +E+ G +CNF+ + R
Sbjct: 275 EAEXQAALSLFNKRWYTGPHLQCEFCPVIRWKMAICSSFEKQQHPTGKHCNFLPVFRNPI 334
Query: 119 -----ISRDLRRQL------FGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRD 167
++RD+ L FG+ R R Y+ +R S H +
Sbjct: 335 SEFWEVNRDICLSLNRTASSFGKNSXRRERMGHHDEYSYKRNGESERKRSSHXGK----- 389
Query: 168 KYYESRSRRHRSTSPSHRRGRSRSPGGRRYHS 199
+ H+ TS S R S S G R+HS
Sbjct: 390 -------KSHKHTSVSQERHGSXSRGRNRHHS 414
>gi|157128201|ref|XP_001655088.1| U2 snrnp auxiliary factor, small subunit [Aedes aegypti]
gi|108872656|gb|EAT36881.1| AAEL011071-PA [Aedes aegypti]
Length = 509
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 10 PGVDAQGNP---------LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
P +D Q +P D ++ + +F+ D+ EE +G I + N H+
Sbjct: 226 PALDHQQHPEYGLDSSIEFDDDELYRSYTEFFMDVIEEFESFGPISGFFVTRNFEPHLRG 285
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
+ + AA+A + ++GRFYA + + V+F + A C +E + C +G CN+
Sbjct: 286 NVYVQYEKVRDAAKAYQRMNGRFYASKQLRVEFRAPIVWTAAVCGLFERSRCQKGKSCNY 345
Query: 114 MHL 116
+HL
Sbjct: 346 LHL 348
>gi|156379393|ref|XP_001631442.1| predicted protein [Nematostella vectensis]
gi|156218482|gb|EDO39379.1| predicted protein [Nematostella vectensis]
Length = 361
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
E +E+F+ D+ E K G++ C N H+ F++EE ARA + +GR+YA
Sbjct: 13 ERYEEFFNDVLPEFEKAGKVVQFKACCNYEPHLRGNVYVQFKDEESCARAFAAFNGRWYA 72
Query: 79 GRPIIVDFSPVTDFREATCRQY 100
+ + +FSPVT ++ A C ++
Sbjct: 73 QKQLSCEFSPVTRWKSAICDRF 94
>gi|221472666|ref|NP_608857.2| CG3294, isoform A [Drosophila melanogaster]
gi|220901945|gb|AAF50982.3| CG3294, isoform A [Drosophila melanogaster]
Length = 456
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D+ EEL K+G I + N ++L H+F E E A RA +
Sbjct: 227 LTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTN 286
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
L GR+YA + + V+FS + +R A C C +G C ++HL
Sbjct: 287 LQGRYYASKRLNVEFSNLRTWRGAVCGLSLTRKCPKGNDCGYLHL 331
>gi|158299259|ref|XP_319372.4| AGAP010194-PA [Anopheles gambiae str. PEST]
gi|157014279|gb|EAA13785.4| AGAP010194-PA [Anopheles gambiae str. PEST]
Length = 505
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKS 71
D ++ + +F+ D+ +E +G + + +C N H+ + AA A
Sbjct: 221 FDEDDLKNSYNEFFRDIIQEFEMFGTVRHIFVCRNSVAHLRGSVYIEYESMRNAAAAYLR 280
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
++GRFYA + + V+F + A C E N C +G CNF+H+
Sbjct: 281 MNGRFYAKKQLHVEFRNTLTWPTAVCGLNEMNRCQKGAGCNFLHI 325
>gi|167384024|ref|XP_001736783.1| splicing factor U2Af 38 kDa subunit [Entamoeba dispar SAW760]
gi|165900719|gb|EDR26968.1| splicing factor U2Af 38 kDa subunit, putative [Entamoeba dispar
SAW760]
Length = 251
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 5 LDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM------ 58
+ ++ P V + P+ QE +E F+ DL+ + +G++ + + +N A H+
Sbjct: 33 VTILLPHVWPAQQVITPQD-QEQYEHFFFDLYTLCSGFGQVVDMIVSENQAPHLKGNVLV 91
Query: 59 -FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK 117
F E AA A+K L G+ ++ + + + D +E+ C+Q++ C + CN++H+
Sbjct: 92 KFATEAMAAEAVKHLQGQLFSSVVLNPSYVGIIDLKESRCKQHDMGVCPKHSGCNYLHVL 151
Query: 118 RI 119
I
Sbjct: 152 PI 153
>gi|195576588|ref|XP_002078157.1| GD23299 [Drosophila simulans]
gi|194190166|gb|EDX03742.1| GD23299 [Drosophila simulans]
Length = 492
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D EEL K+G I + N ++L H+F E E A RA +
Sbjct: 227 LTEQDLRHDYDEFFNDAVEELGKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTN 286
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
L GR+YA + + V+FS + +R A C C +G C ++HL
Sbjct: 287 LQGRYYASKRLNVEFSNLRTWRGAVCGLSLTRKCPKGNGCGYLHL 331
>gi|123437829|ref|XP_001309706.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121891444|gb|EAX96776.1| hypothetical protein TVAG_216790 [Trichomonas vaginalis G3]
Length = 206
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 29 EDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRP 81
+ FY D+F ++G +E + I N D M F+E + A A +L+ ++YAGR
Sbjct: 69 DAFYYDIFLMCQRFGPVEDILIASNKTDIMNGNVYVSFKEVDAAQAAFLTLNNQYYAGRK 128
Query: 82 IIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH 135
+ +P++ A C E+ C G CN++H +IS + + F R R +
Sbjct: 129 VECVLTPISRLSNAIC---NESACPYGSTCNYVHPLKISEHITKICFPRSSRVY 179
>gi|307171941|gb|EFN63567.1| U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 [Camponotus floridanus]
Length = 507
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HF FYED+ + L +G+I++L C N H+ + E +AARA + L G YA
Sbjct: 237 HFRKFYEDVIKILELFGKIKTLKCCCNTELHLRGNLYVEYYTEREAARAWRHLKGYTYAN 296
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGG-YCNFMH 115
+ + +F +T +R+A C C +G CNF+H
Sbjct: 297 KQLNCEFVNLTSWRKAICGM---TKCPKGSKACNFLH 330
>gi|123433241|ref|XP_001308579.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121890266|gb|EAX95649.1| hypothetical protein TVAG_045370 [Trichomonas vaginalis G3]
Length = 206
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 29 EDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRP 81
+ FY D+F ++G +E + I N D M F+E + A A +L+ ++YAGR
Sbjct: 69 DAFYYDIFLMCQRFGPVEDILIASNKTDIMNGNVYVSFKEVDAAQAAFLNLNNQYYAGRK 128
Query: 82 IIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH 135
+ +P++ A C E +C G CN++H +IS + + F R R +
Sbjct: 129 VECVLTPISRLSNAIC---NETSCPYGSTCNYVHPLKISEHITKICFPRSSRVY 179
>gi|241561670|ref|XP_002401206.1| U2 snrnp auxiliary factor, small subunit, putative [Ixodes
scapularis]
gi|215499816|gb|EEC09310.1| U2 snrnp auxiliary factor, small subunit, putative [Ixodes
scapularis]
Length = 409
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 62 EEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
EE+A RAL +GR+YAGR I +FSPV ++ A C + N C +G CNF+H+ R
Sbjct: 156 EEEATRALVMFNGRWYAGRQISCEFSPVQRWKSAICGLFFRNRCPKGRGCNFLHVFRNPT 215
Query: 122 D 122
D
Sbjct: 216 D 216
>gi|195386482|ref|XP_002051933.1| GJ24411 [Drosophila virilis]
gi|194148390|gb|EDW64088.1| GJ24411 [Drosophila virilis]
Length = 449
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 8/125 (6%)
Query: 28 FEDFYEDLFEELNKYGEIESL-NICDNLAD---HMFRE---EEQAARALKSLSGRFYAGR 80
+++F++D EL K+G+I + +C+ L H+F E E A RA +L GR+YA R
Sbjct: 236 YDEFFKDATGELEKFGKIVNFRTVCNTLPHLRGHVFVEYAHERFALRAFINLQGRYYAAR 295
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRS 140
+ V+FS + +R A C C +G C ++HL R +L Y S +RS
Sbjct: 296 RLNVEFSNLKAWRGAVCGLSLTRKCPKGYSCGYLHLFRNPNNLFNSSLEPYGTPGS-ARS 354
Query: 141 RSRSP 145
SR+P
Sbjct: 355 VSRTP 359
>gi|189237330|ref|XP_973215.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 1, related sequence 2 [Tribolium
castaneum]
Length = 337
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HF+DF+ D+ E+ ++G I +C N H+ + +A ++ + +GR+Y G
Sbjct: 229 HFKDFFFDVLPEMERFGRIRQFKVCCNRESHLRGNVYVEYSTTREAVKSFQVFNGRWYGG 288
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
R + V+F + ++ A C G CNF+H+
Sbjct: 289 RQLSVEFCNIESWKSAIC----------GSSCNFLHV 315
>gi|67476636|ref|XP_653880.1| U2 snRNP auxiliary factor [Entamoeba histolytica HM-1:IMSS]
gi|56470879|gb|EAL48494.1| U2 snRNP auxiliary factor, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407039409|gb|EKE39628.1| U2 snRNP auxiliary factor small subunit, putative [Entamoeba
nuttalli P19]
gi|449708002|gb|EMD47542.1| U2 snRNP auxiliary factor, putative [Entamoeba histolytica KU27]
Length = 251
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 5 LDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM------ 58
+ ++ P V + P+ QE +E F+ DL+ + +G++ + + +N A H+
Sbjct: 33 VTILLPHVWPAQQVITPQD-QEQYEHFFFDLYTLCSGFGKVVDMIVSENQASHLKGNVLV 91
Query: 59 -FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK 117
F E A A+K L G+ + + + + D +E+ C+Q++ C + CN++H+
Sbjct: 92 KFATEAMAEEAIKHLQGQLFGSVVLNPSYVGIIDLKESRCKQHDMGVCPKHSGCNYLHVL 151
Query: 118 RI 119
I
Sbjct: 152 PI 153
>gi|303390771|ref|XP_003073616.1| putative U2 small nuclear RNA auxillary factor [Encephalitozoon
intestinalis ATCC 50506]
gi|303302763|gb|ADM12256.1| putative U2 small nuclear RNA auxillary factor [Encephalitozoon
intestinalis ATCC 50506]
Length = 245
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 17 NPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARA 68
+ L IQ H + FYED F EL+ +YG I L I N + + F EE+ A R
Sbjct: 51 STLSKESIQIHLDLFYEDWFSELSIRYGSIRRLVIASNSSSQLLGNIYIEFEEEKTALRC 110
Query: 69 LKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
++ + R+Y+GR I + + C E+ C +G C F+H R+S DL +LF
Sbjct: 111 VEEIGKRYYSGRRIAAELGNCYRIDDGMCTDNEKEKCEKGEKCGFIHSARVSTDLAEELF 170
>gi|432119315|gb|ELK38408.1| Splicing factor U2AF 35 kDa subunit [Myotis davidii]
Length = 121
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
Query: 37 EELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDFSP 88
+E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L R++ G+PI + SP
Sbjct: 63 DEMEKYGEVEEMNVCDNLRDHLVGNVYVQFRPEEDAEKAVMDLDNRWFNGQPIYAELSP 121
>gi|4914334|gb|AAD32882.1|AC005489_20 F14N23.20 [Arabidopsis thaliana]
Length = 836
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 45/136 (33%)
Query: 28 FEDFYEDLFEELNKYGEIESLNIC---------------------DNLADHMF------- 59
+E+FYED+ E KYGE+ + +C ++ H F
Sbjct: 348 YEEFYEDVHTEFLKYGELVNFKVCRFSSAPSPPFPSFPLPPLFFLLSIISHRFILYQIRI 407
Query: 60 --------------REEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN-- 103
R E A A +S++GR++AG+ + +F ++ ++ A C +Y ++
Sbjct: 408 NGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRL 467
Query: 104 -TCNRGGYCNFMHLKR 118
TC+RG CNF+H R
Sbjct: 468 KTCSRGSACNFIHCFR 483
>gi|194856250|ref|XP_001968707.1| GG25018 [Drosophila erecta]
gi|190660574|gb|EDV57766.1| GG25018 [Drosophila erecta]
Length = 447
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D EEL K+G I + N ++L H+F E E A RA +
Sbjct: 227 LTEQDLRHDYDEFFNDAVEELRKFGTIVNFRTVRNTVEHLRGHVFVEYTNERSALRAFTN 286
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
L GR+YA + + V+FS + +R A C G C ++HL
Sbjct: 287 LQGRYYASKKLNVEFSNLKTWRGAVC----------GNGCGYLHL 321
>gi|359392870|gb|AEV45842.1| rough endosperm 3 epsilon isoform [Zea mays]
Length = 368
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 279 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSFHLRGNVYVHYKSLDSALLAYSSMNGR 338
Query: 76 FYAGRPIIVDFSPVTDFREATCRQY 100
++AG+ I +F VT ++ A C +
Sbjct: 339 YFAGKQITCEFVAVTRWKAAICDMF 363
>gi|195471335|ref|XP_002087960.1| GE18306 [Drosophila yakuba]
gi|194174061|gb|EDW87672.1| GE18306 [Drosophila yakuba]
Length = 496
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D EEL K+G I + N ++L H+F E E A RA +
Sbjct: 227 LTEQDLRHDYDEFFRDAVEELEKFGTIVNFRTVRNTLEHLRGHVFVEYTSERSALRAFTN 286
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
L GR+YA + + V+FS + +R A C G C ++HL
Sbjct: 287 LQGRYYASKRLNVEFSNLRTWRGAVC----------GNGCGYLHL 321
>gi|256070881|ref|XP_002571770.1| arylformamidase [Schistosoma mansoni]
gi|353228669|emb|CCD74840.1| putative kynurenine aminotransferase [Schistosoma mansoni]
Length = 967
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 16 GNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM--------FREEEQAA 66
G +D ++ + +FY D+ EL +++G+I + C NLADH+ R A
Sbjct: 254 GLEVDESQLLSDYHEFYHDVRMELESRWGKISVIRTCRNLADHLRGSVYVEFSRGPSAAW 313
Query: 67 RALKSLSGRFYAGRPIIVDFSPV-TDFREATCRQYEENTCNRGG-YCNFMHL----KRIS 120
A ++ +GR++AGR + + +REA C Y C +G +CNF+H+ S
Sbjct: 314 DAAEACNGRWFAGRKLTCTVVRLGGGWREAICGLYHRGKCPKGDLHCNFLHVFLNPGETS 373
Query: 121 RDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDR 154
DL++ L+ R R SP + H DR
Sbjct: 374 NDLQKTLW--------RHVGRLISPVDNNGHGDR 399
>gi|161612122|gb|AAI56009.1| LOC100135135 protein [Xenopus (Silurana) tropicalis]
Length = 260
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 67 RALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
+A +GR+YA R + +FSPVT ++ A C +E C RG +CNF+H+
Sbjct: 2 KAFTQFNGRWYASRQLQCEFSPVTRWKTAICGLFERQKCPRGKHCNFLHV 51
>gi|47230617|emb|CAF99810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 471
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 37/133 (27%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++ E F +FY D+ E G++ + N H+ F EEQ AL +GR
Sbjct: 220 ELYESFLEFYHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFGSEEQCKEALIKFNGR 279
Query: 76 FYAGRPIIVDFSPVTDFREATCRQ------------------------------YEENTC 105
+YAGR + + PVT ++ A C Q ++ C
Sbjct: 280 WYAGRQLHCEMCPVTRWKNAICGQLLLSHHIRAHSNVHALDLPLRMCFVFLPGLFDRQKC 339
Query: 106 NRGGYCNFMHLKR 118
+G +CNF+H+ R
Sbjct: 340 PKGKHCNFLHVFR 352
>gi|441627326|ref|XP_004089246.1| PREDICTED: splicing factor U2AF 26 kDa subunit [Nomascus
leucogenys]
Length = 202
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ LS R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELSNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQY 100
+ V C +
Sbjct: 102 HGNVPEVASATSCICDPF 119
>gi|195342524|ref|XP_002037850.1| GM18489 [Drosophila sechellia]
gi|194132700|gb|EDW54268.1| GM18489 [Drosophila sechellia]
Length = 447
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D EEL K+G I + N ++L H+F E E A RA +
Sbjct: 227 LTEQDLRHDYDEFFNDAVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTN 286
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHL 116
L GR+YA + + V+FS + +R A C G C ++HL
Sbjct: 287 LQGRYYASKRLNVEFSNLRTWRGAVC----------GNGCGYLHL 321
>gi|195433120|ref|XP_002064563.1| GK23757 [Drosophila willistoni]
gi|194160648|gb|EDW75549.1| GK23757 [Drosophila willistoni]
Length = 589
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 17/102 (16%)
Query: 24 IQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKSLSGRF 76
+++ +++F+ D EL K+G+I + N D L H+F E E A RA +L GR+
Sbjct: 228 LRDSYDEFFHDAVAELEKFGKIVNFRALRNTLDYLRGHVFVEYAQERHALRAFINLQGRY 287
Query: 77 YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
YA R + V+FS + +R A C G C ++HL R
Sbjct: 288 YASRQLNVEFSNLKGWRGAVC----------GYSCAYLHLFR 319
>gi|168061106|ref|XP_001782532.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666017|gb|EDQ52684.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 158
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
++ + +E+FY+D+ E ++GE+ + +C N + H+ + +E A A ++GR
Sbjct: 59 EVAQEYEEFYDDVHSEFIQFGELVNFKVCRNGSPHLRGNVYVHYASQESAMLAYNHMNGR 118
Query: 76 FYAGRPIIVDFSP----VTDFREATCRQYEENTCNRGGYCNFMH 115
FYA + +++ P + D A C TC+ G CNFMH
Sbjct: 119 FYAKKQVVL---PRGWKICDIL-ACCFWSTVQTCSHGSACNFMH 158
>gi|444322338|ref|XP_004181817.1| hypothetical protein TBLA_0G03640 [Tetrapisispora blattae CBS 6284]
gi|387514862|emb|CCH62298.1| hypothetical protein TBLA_0G03640 [Tetrapisispora blattae CBS 6284]
Length = 213
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
F+ Y+D+F E K+G+I SL I N D + + + A A+ + + R+Y R
Sbjct: 104 FDSIYQDIFLEAMKFGKILSLEISVNENDCLNGNVYIKYLNDSIARDAMNNFNTRWYDER 163
Query: 81 PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQL 127
PI D + ++ E TCR+Y+ C RG C +H + S L+ L
Sbjct: 164 PIYCD---LVNYNEGTCRRYDNGNCARGPECTLLHRRWPSSRLKWDL 207
>gi|94536807|ref|NP_659424.2| splicing factor U2AF 26 kDa subunit isoform 2 [Homo sapiens]
gi|261861058|dbj|BAI47051.1| U2 small nuclear RNA auxiliary factor 1-like 4 [synthetic
construct]
Length = 202
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ LS R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQY 100
+ V C +
Sbjct: 102 HGNVPEVASATSCICGPF 119
>gi|324505230|gb|ADY42252.1| Splicing factor U2AF 35 kDa subunit [Ascaris suum]
Length = 151
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 9/65 (13%)
Query: 20 DPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKS 71
DP + Q++F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K
Sbjct: 88 DPEE-QKYFDEFYEEVFTELERKYGEIDEMNVCENIGEHMIGNVYVKFVREEDAEKAVKD 146
Query: 72 LSGRF 76
L R+
Sbjct: 147 LQNRW 151
>gi|194766159|ref|XP_001965192.1| GF21431 [Drosophila ananassae]
gi|190617802|gb|EDV33326.1| GF21431 [Drosophila ananassae]
Length = 314
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 28 FEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKSLSGRFYAGR 80
F++F+ED +EL K+G I + N ++L H+F E E A RA +L GR+YA R
Sbjct: 236 FDEFFEDAIKELEKFGSIVNFRAVRNTLEHLRGHVFVEYGHERSALRAFINLQGRYYASR 295
Query: 81 PIIVDFSPVTDFREATC 97
+ V+FS + +R A C
Sbjct: 296 RLNVEFSNLKTWRGAVC 312
>gi|281354289|gb|EFB29873.1| hypothetical protein PANDA_009769 [Ailuropoda melanoleuca]
Length = 204
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAV 101
>gi|18088983|gb|AAH21186.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Homo sapiens]
gi|123983214|gb|ABM83348.1| U2 small nuclear RNA auxiliary factor 1-like 4 [synthetic
construct]
gi|123997921|gb|ABM86562.1| U2 small nuclear RNA auxiliary factor 1-like 4 [synthetic
construct]
Length = 202
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ LS R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHVVGNVYVKFRREEDGERAVAELSNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQY 100
+ V C +
Sbjct: 102 HGNVPEVASATSCICGPF 119
>gi|393907857|gb|EFO28010.2| hypothetical protein LOAG_00486 [Loa loa]
Length = 251
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 8/60 (13%)
Query: 25 QEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRF 76
Q +F++FYE++F EL KYGEI+ +N+C+N+ +HM F EE A +A+K L R+
Sbjct: 192 QAYFDEFYEEVFTELERKYGEIDEMNVCENIGEHMIGNVYVKFMREEDAEKAVKDLENRW 251
>gi|302757309|ref|XP_002962078.1| hypothetical protein SELMODRAFT_77053 [Selaginella moellendorffii]
gi|300170737|gb|EFJ37338.1| hypothetical protein SELMODRAFT_77053 [Selaginella moellendorffii]
Length = 132
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAAR 67
+G +I++ FE+FYED+ E K+GE+ + +C N + H+ ++ E A
Sbjct: 52 EGLECTDEEIEQKFEEFYEDVHSEFLKFGELVNFKVCRNSSPHLRGNVYVHYQSEADAVA 111
Query: 68 ALKSLSGRFYAGRPIIVDFS 87
A +LSGRFYA + ++ +S
Sbjct: 112 ACLALSGRFYASKQVLARYS 131
>gi|119629908|gb|EAX09503.1| U2(RNU2) small nuclear RNA auxiliary factor 1, isoform CRA_c
[Homo sapiens]
Length = 128
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 31/37 (83%), Gaps = 1/37 (2%)
Query: 24 IQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMF 59
+QEH+++F+E++F E+ KYGE+E +N+CDNL DH+
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLV 37
>gi|340508294|gb|EGR34030.1| zinc finger protein, putative [Ichthyophthirius multifiliis]
Length = 126
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 14 AQGNPL---DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM 58
AQGN + + +K + FE+FYE++F EL YGEI+ L ICDN+ DHM
Sbjct: 62 AQGNRVSEEEIKKALDTFEEFYEEVFLELANYGEIDDLIICDNIGDHM 109
>gi|114676797|ref|XP_512599.2| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 4 [Pan
troglodytes]
gi|410220668|gb|JAA07553.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Pan troglodytes]
gi|410247510|gb|JAA11722.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Pan troglodytes]
gi|410287276|gb|JAA22238.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Pan troglodytes]
gi|410329231|gb|JAA33562.1| U2 small nuclear RNA auxiliary factor 1-like 4 [Pan troglodytes]
Length = 202
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQY 100
+ V C +
Sbjct: 102 HGNVPEVASATSCICGPF 119
>gi|397490403|ref|XP_003816194.1| PREDICTED: splicing factor U2AF 26 kDa subunit isoform 1 [Pan
paniscus]
Length = 202
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE RA+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQY 100
+ V C +
Sbjct: 102 HGNVPEVASATSCICGPF 119
>gi|242007963|ref|XP_002424784.1| U2 snrnp auxiliary factor, small subunit, putative [Pediculus
humanus corporis]
gi|212508307|gb|EEB12046.1| U2 snrnp auxiliary factor, small subunit, putative [Pediculus
humanus corporis]
Length = 408
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAG 79
HF++FY D+ E K+G++ + +C N H+ ++ ++ A A K GR+Y
Sbjct: 233 HFKEFYTDIVPEFKKFGDLTMVKVCCNSEPHLRGNVYIEYKHKKDALLAYKEFQGRWYG- 291
Query: 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
D+ A C + C +G CNF+H+ R
Sbjct: 292 -----------DWGGAVCGDFARRRCLKGKSCNFLHVFR 319
>gi|21483354|gb|AAM52652.1| GM14666p [Drosophila melanogaster]
Length = 321
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D+ EEL K+G I + N ++L H+F E E A RA +
Sbjct: 234 LTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTN 293
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATC 97
L GR+YA + + V+FS + +R A C
Sbjct: 294 LQGRYYASKRLNVEFSNLRTWRGAVC 319
>gi|28574034|ref|NP_787976.1| CG3294, isoform B [Drosophila melanogaster]
gi|28380246|gb|AAO41150.1| CG3294, isoform B [Drosophila melanogaster]
Length = 314
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFRE---EEQAARALKS 71
L + ++ +++F+ D+ EEL K+G I + N ++L H+F E E A RA +
Sbjct: 227 LTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTN 286
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATC 97
L GR+YA + + V+FS + +R A C
Sbjct: 287 LQGRYYASKRLNVEFSNLRTWRGAVC 312
>gi|195035213|ref|XP_001989072.1| GH11518 [Drosophila grimshawi]
gi|193905072|gb|EDW03939.1| GH11518 [Drosophila grimshawi]
Length = 312
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 21 PRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLS 73
P+ ++ ++ F+ D+ +EL K+G+I + + N H+ + +E A RA +L
Sbjct: 227 PQDLRADYDAFFNDVVDELQKFGKIINFRVVCNTLPHLRGHVFVEYAQERYALRAFVNLQ 286
Query: 74 GRFYAGRPIIVDFSPVTDFREATC 97
GR+YA R + V+FS + +R A C
Sbjct: 287 GRYYASRRLNVEFSNLKAWRGAVC 310
>gi|426388320|ref|XP_004060589.1| PREDICTED: splicing factor U2AF 26 kDa subunit [Gorilla gorilla
gorilla]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 31 FYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPI 82
F +++F EL KYGEIE +N+CDNL DH+ FR EE A+ L+ R++ G+ +
Sbjct: 42 FSQEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGQWAVAELNNRWFNGQAV 101
Query: 83 IVDFSPVTDFREATCRQY 100
+ V C +
Sbjct: 102 HGNVPEVASATSCICSPF 119
>gi|226532572|ref|NP_001144599.1| uncharacterized protein LOC100277614 [Zea mays]
gi|195644392|gb|ACG41664.1| hypothetical protein [Zea mays]
Length = 165
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 45/85 (52%), Gaps = 23/85 (27%)
Query: 150 SHEDRSHSGHGR-----RYDD------RDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYH 198
S DR G GR RYDD R + Y+ RR + P RRGRS
Sbjct: 93 SRHDRYDDGAGRGGRHDRYDDGAGRGGRYERYDDGGRRRHGSPP--RRGRS--------- 141
Query: 199 SPVREGSEERRAKIEQWNREREQQE 223
PVRE SEERRAKIEQWNRERE ++
Sbjct: 142 -PVRESSEERRAKIEQWNRERESKQ 165
>gi|413948478|gb|AFW81127.1| hypothetical protein ZEAMMB73_610548, partial [Zea mays]
Length = 108
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 195 RRYHSPVREGSEERRAKIEQWNREREQQE 223
RR SPVRE SEERRAKIEQWNRERE ++
Sbjct: 80 RRGRSPVRESSEERRAKIEQWNRERESKQ 108
>gi|195114372|ref|XP_002001741.1| GI17015 [Drosophila mojavensis]
gi|193912316|gb|EDW11183.1| GI17015 [Drosophila mojavensis]
Length = 170
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL----NICDNLADHMFREEEQ---AARALKS 71
L + ++ +++F+ D EL K+G+I + N +L H+F E Q A RA +
Sbjct: 83 LTEQDLRNDYDEFFNDAIGELQKFGKILNFRAVRNTLPHLRGHVFVEYAQERFALRAFVN 142
Query: 72 LSGRFYAGRPIIVDFSPVTDFREATC 97
L GR+YA R + V+FS + +R A C
Sbjct: 143 LQGRYYASRRLQVEFSNLKGWRGAVC 168
>gi|299470157|emb|CBN78185.1| hypothetical protein Esi_0103_0024 [Ectocarpus siliculosus]
Length = 1504
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 125 RQLFGRYRRRHSR--SRSRSRSPYRHRSHEDRSHSGHGRRYDDRD-KYYESRSRRHRSTS 181
R L G Y H+ ++ RS H E R S ++ R K + RSR RSTS
Sbjct: 43 RDLIGDYEEAHNLRLPKAIGRSGQNHAGKEARKVSTVTKQSTSRSRKSWSPRSRARRSTS 102
Query: 182 PSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINN 241
PS RR RS SP +G+ R ++ R++ EEAY+ N GG ++G+ N
Sbjct: 103 PSQRRSIDRS------LSPEPKGTAGERGQL-----HRDEDEEAYEVNKGGG--EEGLKN 149
Query: 242 D 242
D
Sbjct: 150 D 150
>gi|302775180|ref|XP_002971007.1| hypothetical protein SELMODRAFT_94627 [Selaginella moellendorffii]
gi|300160989|gb|EFJ27605.1| hypothetical protein SELMODRAFT_94627 [Selaginella moellendorffii]
Length = 132
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 34 DLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGRPIIVDF 86
D+ E K+GE+ + +C N + H+ ++ EE A A +LSGRFYA + ++ +
Sbjct: 71 DVHSEFLKFGELVNFKVCRNSSPHLRGNVYVHYQSEEDAVAACLALSGRFYASKQVLARY 130
Query: 87 S 87
S
Sbjct: 131 S 131
>gi|256091162|ref|XP_002581498.1| hypothetical protein [Schistosoma mansoni]
Length = 60
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 105 CNRGGYCNFMHLKRISRDLRRQLF 128
C RGG+CNFMHLK ISR+L R+L+
Sbjct: 2 CTRGGFCNFMHLKPISRELCRKLY 25
>gi|12847222|dbj|BAB27483.1| unnamed protein product [Mus musculus]
Length = 561
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 25/211 (11%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FRE E+A +++L GR++ GR I +
Sbjct: 290 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWD 349
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ--LFGRYRRRHSRSRSRSRSP 145
TD++ E G+ F++ SR LRR + G R SR R S P
Sbjct: 350 GTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHP 407
Query: 146 YRHRSHEDRSHSGHG-RRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREG 204
+ +G D +K+ ++ S + + GG P REG
Sbjct: 408 SMSNMKAQEATTGMAFEETIDENKFEKAEEGGESEGDASEKDAKE---GGSDGDHPEREG 464
Query: 205 SE------------ERRAKIEQWNREREQQE 223
E ER + E+ N + E QE
Sbjct: 465 GEGCSKKENEEGCPERALEPEEGNPQTEAQE 495
>gi|23956212|ref|NP_082518.1| HIV Tat-specific factor 1 homolog [Mus musculus]
gi|321267528|ref|NP_083647.1| HIV Tat-specific factor 1 homolog [Mus musculus]
gi|81913100|sp|Q8BGC0.1|HTSF1_MOUSE RecName: Full=HIV Tat-specific factor 1 homolog
gi|22902415|gb|AAH37711.1| HIV TAT specific factor 1 [Mus musculus]
gi|26340228|dbj|BAC33777.1| unnamed protein product [Mus musculus]
gi|148710215|gb|EDL42161.1| HIV TAT specific factor 1, isoform CRA_a [Mus musculus]
Length = 757
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 13/182 (7%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FRE E+A +++L GR++ GR I +
Sbjct: 290 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWD 349
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ--LFGRYRRRHSRSRSRSRSP 145
TD++ E G+ F++ SR LRR + G R SR R S P
Sbjct: 350 GTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHP 407
Query: 146 YRHRSHEDRSHSGHG-RRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREG 204
+ +G D +K+ ++ S + + GG P REG
Sbjct: 408 SMSNMKAQEATTGMAFEETIDENKFEKAEEGGESEGDASEKDAKE---GGSDGDHPEREG 464
Query: 205 SE 206
E
Sbjct: 465 GE 466
>gi|440791603|gb|ELR12841.1| splicing factor, CC1like subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 594
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 30 DFYEDLFEELNKYGEIESLNIC----DNLADHMFREEEQAARALKSLSGRFYAGRPIIVD 85
D ED+ EE +KYG++ ++ L F E AA+A+++L+GR++AG+ I +
Sbjct: 522 DIQEDVTEECSKYGKVLQCHVVRDSPSGLVYLRFESSEGAAKAIQALNGRWFAGKVISAE 581
Query: 86 F 86
F
Sbjct: 582 F 582
>gi|148710216|gb|EDL42162.1| HIV TAT specific factor 1, isoform CRA_b [Mus musculus]
Length = 793
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 25/211 (11%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FRE E+A +++L GR++ GR I +
Sbjct: 326 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWD 385
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ--LFGRYRRRHSRSRSRSRSP 145
TD++ E G+ F++ SR LRR + G R SR R S P
Sbjct: 386 GTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHP 443
Query: 146 YRHRSHEDRSHSGHG-RRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREG 204
+ +G D +K+ ++ S + + GG P REG
Sbjct: 444 SMSNMKAQEATTGMAFEETIDENKFEKAEEGGESEGDASEKDAKE---GGSDGDHPEREG 500
Query: 205 SE------------ERRAKIEQWNREREQQE 223
E ER + E+ N + E QE
Sbjct: 501 GEGCSKKENEEGCPERALEPEEGNPQTEAQE 531
>gi|148710217|gb|EDL42163.1| HIV TAT specific factor 1, isoform CRA_c [Mus musculus]
Length = 464
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 13/197 (6%)
Query: 18 PLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLS 73
P+D + EDL E +K+G+I L + D +A FRE E+A +++L
Sbjct: 178 PMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLD 237
Query: 74 GRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ--LFGR 130
GR++ GR I + TD++ E G+ F++ SR LRR + G
Sbjct: 238 GRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGS 295
Query: 131 YRRRHSRSRSRSRSPYRHRSHEDRSHSGHG-RRYDDRDKYYESRSRRHRSTSPSHRRGRS 189
R SR R S P + +G D +K+ ++ S + +
Sbjct: 296 ERPGPSRMRHFSEHPSMSNMKAQEATTGMAFEETIDENKFEKAEEGGESEGDASEKDAKE 355
Query: 190 RSPGGRRYHSPVREGSE 206
GG P REG E
Sbjct: 356 ---GGSDGDHPEREGGE 369
>gi|344297715|ref|XP_003420542.1| PREDICTED: HIV Tat-specific factor 1 homolog [Loxodonta africana]
Length = 743
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I+ L + D +A FR+ E+A + +L GR++ GR I + +
Sbjct: 289 EDLRVECSKFGQIKKLILFDRHPDGVASVSFRDPEEADYCIHTLDGRWFGGRQITAEAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSR 141
TD++ + E G+ F++ +R RR R SR R
Sbjct: 349 GTTDYQVEETTREREERLR--GWEAFLNEPEANRGFRRSNLASASERAGPSRVR 400
>gi|348557907|ref|XP_003464760.1| PREDICTED: LOW QUALITY PROTEIN: HIV Tat-specific factor 1 homolog
[Cavia porcellus]
Length = 752
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E K+G+I+ L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 289 EDLRVECAKFGQIKKLLLFDRHPDGVASVSFRDAEEADHCIQTLDGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR-------QLFGRYRRRH 135
TD++ + E G+ F++ +R L+R ++ G R RH
Sbjct: 349 GTTDYQVEETSREREERLK--GWEAFLNAPEANRSLQRSDSVSASEMAGPSRARH 401
>gi|354475309|ref|XP_003499872.1| PREDICTED: HIV Tat-specific factor 1 homolog [Cricetulus griseus]
Length = 714
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E K+G+I+ L + D +A FRE E+A +++L GR++ GR I + +
Sbjct: 216 EDLRVECAKFGQIKKLLLFDRHPDGVASVSFREPEEADYCIQTLDGRWFGGRQITAEAWD 275
Query: 88 PVTDFR 93
TD++
Sbjct: 276 GTTDYQ 281
>gi|344247059|gb|EGW03163.1| HIV Tat-specific factor 1-like [Cricetulus griseus]
Length = 528
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E K+G+I+ L + D +A FRE
Sbjct: 12 MFHP-MDFEDDPLVLNEIRE-------DLRVECAKFGQIKKLLLFDRHPDGVASVSFREP 63
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFR 93
E+A +++L GR++ GR I + + TD++
Sbjct: 64 EEADYCIQTLDGRWFGGRQITAEAWDGTTDYQ 95
>gi|157818333|ref|NP_001101729.1| HIV-1 Tat specific factor 1 [Rattus norvegicus]
gi|149015808|gb|EDL75132.1| HIV TAT specific factor 1 (predicted) [Rattus norvegicus]
Length = 776
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIV 84
EDL E +K+G+I L + D +A FRE E+A +++L GR++ GR I
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADNCIQTLDGRWFGGRQITA 344
>gi|431907193|gb|ELK11259.1| Putative RNA-binding protein 23 [Pteropus alecto]
Length = 914
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 148 HRSHE-DRSHSGHGRRYDDRDKYYESRSRRHRSTSP---SHRRGRSRSPGGRRYHSPVRE 203
HRSH DR HS R +D R + R H + P R G S+SP R SPVRE
Sbjct: 80 HRSHSWDRRHSTESRSWDRRRE-----DRVHYRSPPLATGRRYGHSKSPHFRE-KSPVRE 133
Query: 204 -----GSEERRAK 211
EER A+
Sbjct: 134 PVDNLSPEERDAR 146
>gi|86438143|gb|AAI12691.1| HTATSF1 protein [Bos taurus]
Length = 524
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L+GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLNGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSR 141
TD++ + E G+ F++ +R L+R R R SR R
Sbjct: 349 GTTDYQVEETTREREERMR--GWEAFLNAPEANRGLQRSNSIRAPERAGPSRVR 400
>gi|1667611|gb|AAB18823.1| Tat-SF1 [Homo sapiens]
Length = 754
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR-HSRSRSRSRSPY 146
TD++ E G+ F++ +R L Q+ R+ SR+R S P
Sbjct: 349 GTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLSVQILSLLRKAGPSRARHFSEHPS 406
Query: 147 RHRSHEDRSHSG 158
+ + + +G
Sbjct: 407 TSKMNAQETATG 418
>gi|293334639|ref|NP_001169755.1| uncharacterized protein LOC100383636 [Zea mays]
gi|224031469|gb|ACN34810.1| unknown [Zea mays]
gi|414887660|tpg|DAA63674.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
gi|414887661|tpg|DAA63675.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
Length = 246
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAG 79
F +DLF +KYGEI + I + A ++ E++A +A++ L GR G
Sbjct: 26 FRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVERLDGRLVDG 85
Query: 80 RPIIVDFS 87
R I+V F+
Sbjct: 86 REIMVQFA 93
>gi|345807273|ref|XP_538183.3| PREDICTED: HIV Tat-specific factor 1 homolog [Canis lupus
familiaris]
Length = 768
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ + E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLR--GWEAFLNAPEANR 380
Query: 122 DLRR--QLFGRYRRRHSRSRSRSRSP 145
LRR + R SR R S P
Sbjct: 381 SLRRSNSICASERAGPSRVRHFSERP 406
>gi|330340363|ref|NP_001193343.1| HIV Tat-specific factor 1 [Bos taurus]
Length = 773
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L+GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLNGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSR 141
TD++ + E G+ F++ +R L+R R R SR R
Sbjct: 349 GTTDYQVEETTREREERLR--GWEAFLNAPEANRGLQRSNSIRAPERAGPSRVR 400
>gi|393215487|gb|EJD00978.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 247
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 79/186 (42%), Gaps = 42/186 (22%)
Query: 34 DLFEELNKYGEIESLNIC-DNLADH-------MFREEEQAARALKSLSGRFYAGRPIIVD 85
DL EE +++G +E + I D +D E AAR ++ L+G GR I VD
Sbjct: 49 DLDEEFSRFGRVEKVTIVYDQRSDRSRGFGFIKLASVEDAARCIQELNGVELNGRRIRVD 108
Query: 86 FSPVTD------------FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRR 133
+S VT+ R T R Y+ +RG Y + I RD + R
Sbjct: 109 YS-VTERPHAPTPGEYMGHRRNTGRDYDRR--DRGPYRESYRERDIRRDYDERDRYYDRE 165
Query: 134 RHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPS-------HRR 186
R+ R Y S +DR +S GR DRD Y R RHRS +P HRR
Sbjct: 166 RYDR--------YDRYSDKDR-YSDRGR---DRDPYGRDRDWRHRSPAPVGRYGSDRHRR 213
Query: 187 GRSRSP 192
SRSP
Sbjct: 214 SYSRSP 219
>gi|296481686|tpg|DAA23801.1| TPA: HIV-1 Tat specific factor 1-like [Bos taurus]
Length = 766
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P VD + +PL +I+E DL E +K+G+I L + D +A FR
Sbjct: 271 MFHP-VDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRSP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L+GR++ GR I + TD + E G+ F++ +R
Sbjct: 323 EEADYCIQTLNGRWFGGRQITAQAWDGTTDCQVEETTSEREERLR--GWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSR 141
L+R R R SR R
Sbjct: 381 GLQRSDSIRAPERAGSSRVR 400
>gi|431891353|gb|ELK02229.1| HIV Tat-specific factor 1 like protein [Pteropus alecto]
Length = 786
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 270 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 321
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ + E G+ F++ ++
Sbjct: 322 EEADYCIQTLDGRWFGGRQITAQVWDGTTDYQVEETTREREERLK--GWEAFLNAPEANK 379
Query: 122 DLRR--QLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHG 160
LRR + R SR R S P + + +G
Sbjct: 380 GLRRSNSICASERAGPSRIRHFSEHPSTSKMIAQEAATGMA 420
>gi|30584025|gb|AAP36261.1| Homo sapiens HIV TAT specific factor 1 [synthetic construct]
gi|60653905|gb|AAX29645.1| HIV TAT specific factor 1 [synthetic construct]
gi|60653907|gb|AAX29646.1| HIV TAT specific factor 1 [synthetic construct]
Length = 756
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>gi|62088186|dbj|BAD92540.1| HIV TAT specific factor 1 variant [Homo sapiens]
Length = 758
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 10/168 (5%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 292 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 351
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYR 147
TD++ E G+ F++ +R LRR R SR+R S +
Sbjct: 352 GTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 409
Query: 148 HRSHEDRSHSGHGRRYD---DRDKYYESRSRRHRSTSPSHRRGRSRSP 192
S + + G ++ D K+ ++ S + SP
Sbjct: 410 STSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENNAKESSP 457
>gi|332246954|ref|XP_003272619.1| PREDICTED: HIV Tat-specific factor 1 homolog isoform 1 [Nomascus
leucogenys]
Length = 754
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 10/168 (5%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYR 147
TD++ E G+ F++ +R LRR R SR+R S +
Sbjct: 349 GTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 406
Query: 148 HRSHEDRSHSGHGRRYD---DRDKYYESRSRRHRSTSPSHRRGRSRSP 192
S + + G ++ D K+ ++ S + SP
Sbjct: 407 STSKMNVQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENNAKESSP 454
>gi|226530532|ref|NP_001140562.1| uncharacterized protein LOC100272627 [Zea mays]
gi|194699996|gb|ACF84082.1| unknown [Zea mays]
gi|414590932|tpg|DAA41503.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
Length = 251
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAG 79
F +DLF +KYGEI + I + A ++ E++A +A+ L GR G
Sbjct: 26 FRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDRLDGRLVDG 85
Query: 80 RPIIVDFS 87
R I+V F+
Sbjct: 86 REIMVQFA 93
>gi|397482309|ref|XP_003812372.1| PREDICTED: HIV Tat-specific factor 1 [Pan paniscus]
gi|410211494|gb|JAA02966.1| HIV-1 Tat specific factor 1 [Pan troglodytes]
gi|410261782|gb|JAA18857.1| HIV-1 Tat specific factor 1 [Pan troglodytes]
gi|410304122|gb|JAA30661.1| HIV-1 Tat specific factor 1 [Pan troglodytes]
gi|410333195|gb|JAA35544.1| HIV-1 Tat specific factor 1 [Pan troglodytes]
Length = 755
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>gi|355757742|gb|EHH61267.1| hypothetical protein EGM_19235 [Macaca fascicularis]
Length = 754
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYR 147
TD++ E G+ F++ +R LRR R SR+R S +
Sbjct: 349 GTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 406
Query: 148 HRSHEDRSHSGHGRRYDD 165
S + + G +++
Sbjct: 407 STSKMNAQETATGMAFEE 424
>gi|21361437|ref|NP_055315.2| HIV Tat-specific factor 1 [Homo sapiens]
gi|253970456|ref|NP_001156752.1| HIV Tat-specific factor 1 [Homo sapiens]
gi|74754346|sp|O43719.1|HTSF1_HUMAN RecName: Full=HIV Tat-specific factor 1; Short=Tat-SF1
gi|14602772|gb|AAH09896.1| HIV-1 Tat specific factor 1 [Homo sapiens]
gi|30582611|gb|AAP35532.1| HIV TAT specific factor 1 [Homo sapiens]
gi|61362248|gb|AAX42186.1| HIV TAT specific factor 1 [synthetic construct]
gi|119608874|gb|EAW88468.1| HIV-1 Tat specific factor 1, isoform CRA_a [Homo sapiens]
gi|119608875|gb|EAW88469.1| HIV-1 Tat specific factor 1, isoform CRA_a [Homo sapiens]
gi|157929022|gb|ABW03796.1| HIV-1 Tat specific factor 1 [synthetic construct]
Length = 755
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>gi|197102050|ref|NP_001125576.1| HIV Tat-specific factor 1 homolog [Pongo abelii]
gi|75070769|sp|Q5RB63.1|HTSF1_PONAB RecName: Full=HIV Tat-specific factor 1 homolog
gi|55728510|emb|CAH90997.1| hypothetical protein [Pongo abelii]
Length = 754
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>gi|297304889|ref|XP_001082302.2| PREDICTED: HIV Tat-specific factor 1 homolog isoform 1 [Macaca
mulatta]
gi|355705198|gb|EHH31123.1| hypothetical protein EGK_20983 [Macaca mulatta]
Length = 754
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYR 147
TD++ E G+ F++ +R LRR R SR+R S +
Sbjct: 349 GTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 406
Query: 148 HRSHEDRSHSGHGRRYDD 165
S + + G +++
Sbjct: 407 STSKMNAQETATGMAFEE 424
>gi|426397566|ref|XP_004064985.1| PREDICTED: HIV Tat-specific factor 1 [Gorilla gorilla gorilla]
Length = 755
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMVFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>gi|194387946|dbj|BAG61386.1| unnamed protein product [Homo sapiens]
Length = 721
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 10/168 (5%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYR 147
TD++ E G+ F++ +R LRR R SR+R S +
Sbjct: 349 GTTDYQ--VEETSREREERLRGWEAFLNAPEANRGLRRSDSVSASERAGPSRARHFSEHP 406
Query: 148 HRSHEDRSHSGHGRRYD---DRDKYYESRSRRHRSTSPSHRRGRSRSP 192
S + + G ++ D K+ ++ S + SP
Sbjct: 407 STSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENNAKESSP 454
>gi|414887662|tpg|DAA63676.1| TPA: hypothetical protein ZEAMMB73_707044 [Zea mays]
Length = 207
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAG 79
F +DLF +KYGEI + I + A ++ E++A +A++ L GR G
Sbjct: 26 FRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVERLDGRLVDG 85
Query: 80 RPIIVDFS 87
R I+V F+
Sbjct: 86 REIMVQFA 93
>gi|402911564|ref|XP_003918392.1| PREDICTED: HIV Tat-specific factor 1 homolog [Papio anubis]
Length = 645
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 166 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 217
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 218 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 275
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDD 165
LRR R SR+R S + S + + G +++
Sbjct: 276 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEE 319
>gi|194708586|gb|ACF88377.1| unknown [Zea mays]
gi|414590930|tpg|DAA41501.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
gi|414590931|tpg|DAA41502.1| TPA: hypothetical protein ZEAMMB73_776046 [Zea mays]
Length = 238
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAG 79
F +DLF +KYGEI + I + A ++ E++A +A+ L GR G
Sbjct: 26 FRTTADDLFPLFDKYGEIVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDRLDGRLVDG 85
Query: 80 RPIIVDFS 87
R I+V F+
Sbjct: 86 REIMVQFA 93
>gi|426257498|ref|XP_004022363.1| PREDICTED: HIV Tat-specific factor 1 homolog [Ovis aries]
Length = 774
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A F++ E+A +++L+GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFKDPEEADYCIQTLNGRWFGGRQITAQAWD 348
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRSRSR 141
TD++ + E G+ F++ +R L+R R R SR R
Sbjct: 349 GTTDYQVEETTREREERLR--GWEAFLNAPEANRGLQRSNSIRAPERAGPSRVR 400
>gi|6899884|emb|CAB71893.1| ARGININE/SERINE-RICH SPLICING FACTOR RSP31 [Arabidopsis thaliana]
Length = 271
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 35/190 (18%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYA 78
DP + +EH D+ + YG++ ++ I N + F +E A +AL++
Sbjct: 100 FDPIRTKEH------DIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKIL 153
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
R + V+++ D +E GG R RR L YRRR S
Sbjct: 154 DRVVSVEYALKDD---------DERDDRNGG-----------RSPRRSLSPVYRRRPSPD 193
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRR-----GRSRSPG 193
R SP + R R +GR Y+ + R SP + R GR RSPG
Sbjct: 194 YGRRPSPGQGR----RPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQRSPG 249
Query: 194 GRRYHSPVRE 203
RY SP R+
Sbjct: 250 YDRYRSPKRK 259
>gi|440907708|gb|ELR57819.1| HIV Tat-specific factor 1 [Bos grunniens mutus]
Length = 766
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P VD + +PL +I+E DL E +K+G+I L + D +A FR
Sbjct: 271 MFHP-VDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRSP 322
Query: 63 EQAARALKSLSGRFYAGRPIIV 84
E+A +++L+GR++ GR I
Sbjct: 323 EEADYCIQTLNGRWFGGRQITA 344
>gi|242063870|ref|XP_002453224.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|241933055|gb|EES06200.1| hypothetical protein SORBIDRAFT_04g001910 [Sorghum bicolor]
gi|448878270|gb|AGE46098.1| arginine/serine-rich splicing factor RS34 [Sorghum bicolor]
Length = 295
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 34 DLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87
DL +KYG + ++ I N A F +E A RAL+ +G + R I V+++
Sbjct: 111 DLERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYA 164
>gi|410989518|ref|XP_004001008.1| PREDICTED: HIV Tat-specific factor 1 homolog [Felis catus]
Length = 780
Score = 37.0 bits (84), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E K+G+I L + D +A FR+ E+A +++L GR++ GR I +
Sbjct: 303 EDLRVECAKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 362
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR--QLFGRYRRRHSRSRSRSRSP 145
TD++ + E G+ F++ +R LRR + R SR R S P
Sbjct: 363 GTTDYQVEETTREREERLR--GWEAFLNAPEANRGLRRSNSVCASERAGPSRVRHFSEHP 420
>gi|380481793|emb|CCF41637.1| U2 snRNP auxilliary factor [Colletotrichum higginsianum]
Length = 550
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADH--- 57
+ Q L+M+TP + + +E+ ED+ EE +K+G + + I +
Sbjct: 452 VLQLLNMVTP---------EELMDNDDYEEIKEDVQEECSKFGNVLDIKIPRPVGGSRQS 502
Query: 58 --------MFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92
F E A +AL++L+GR +A R ++ + P +F
Sbjct: 503 AGVGKIFVRFENTESAKKALQALAGRKFADRTVVTTYFPEENF 545
>gi|300681317|emb|CAZ96031.1| arginine/serine-rich splicing factor [Sorghum bicolor]
Length = 324
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 34 DLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87
DL +KYG + ++ I N A F +E A RAL+ +G + R I V+++
Sbjct: 140 DLERHFDKYGRVANVRIKKNFAFVQFEVQEDATRALEGTNGSHFMDRVISVEYA 193
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,697,727,673
Number of Sequences: 23463169
Number of extensions: 212981359
Number of successful extensions: 1171206
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3239
Number of HSP's successfully gapped in prelim test: 11586
Number of HSP's that attempted gapping in prelim test: 979261
Number of HSP's gapped (non-prelim): 108717
length of query: 265
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 125
effective length of database: 9,074,351,707
effective search space: 1134293963375
effective search space used: 1134293963375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)