BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024601
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 258 bits (658), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/239 (61%), Positives = 171/239 (71%), Gaps = 16/239 (6%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MY R DMITPG+DAQGNP+DP KIQ FEDFYED+FEEL+KYGEIESL++CDN ADHM
Sbjct: 51 MYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGR------RYD 164
MH+K I RDLR++LFG R RR HS RSRS SPY +R DR S R R
Sbjct: 171 MHVKEIGRDLRKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGG 230
Query: 165 DRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQQE 223
D Y R S+ SR R SPVR+GSEERRA+IEQWNRERE +
Sbjct: 231 SHDYYRGGSRRSSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNREREAAQ 289
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/246 (60%), Positives = 174/246 (70%), Gaps = 40/246 (16%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNF
Sbjct: 111 NVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSR-----------------SRSRSRSPYRHRSHEDRSH 156
MH+K+ISR+LRR+LFGRYRR + R SR R R R DR
Sbjct: 171 MHVKQISRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVR-----DRDR 225
Query: 157 SGHGRRYDDR-DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQW 215
G+G+R DR +++ R R SP RSRSP VREGSEERRA+IEQW
Sbjct: 226 HGNGKRSSDRSERHDRDGGGRRRHGSPK----RSRSPRN------VREGSEERRARIEQW 275
Query: 216 NREREQ 221
NRER++
Sbjct: 276 NRERDE 281
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/236 (62%), Positives = 168/236 (71%), Gaps = 21/236 (8%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLNICDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
F+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 111 NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLFGRYRRRHSRSRSRSR-----SPYRHRSHEDRSHSGHGRRYDDRDK 168
MH+K +SR+LRR+LFGRYRR + R SP R ++ R S + DRD+
Sbjct: 171 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 230
Query: 169 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP--------VREGSEERRAKIEQWN 216
+ RS+ S R+ R S GRR SP REGSEERRA+IEQWN
Sbjct: 231 EFYRHGSGKRSSERSERQERDGS-RGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 99/135 (73%), Positives = 119/135 (88%), Gaps = 7/135 (5%)
Query: 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-- 58
MYQR DMITPGVDAQG P+DP K+QEHFEDFYED++EEL+K+GE+E+LN+CDNLADHM
Sbjct: 51 MYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIG 110
Query: 59 -----FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNF 113
FREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNF
Sbjct: 111 NVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNF 170
Query: 114 MHLKRISRDLRRQLF 128
MH+K+I R+LRR+L+
Sbjct: 171 MHVKQIGRELRRKLY 185
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+GR
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR---- 188
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
R RSP RSH+GH R+R SP HR GR
Sbjct: 189 ----GPRHRSP-------PRSHTGH------------RPRERNRRRSPDHRHGR 219
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 35/174 (20%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISR+LRRQL+GR
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNLRRQLYGR---- 188
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRRGR 188
R RSP RSH+GH R+R SP HR GR
Sbjct: 189 ----GPRHRSP-------PRSHTGH------------RPRERNRRRSPDHRHGR 219
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 85/114 (74%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F EL KYGEIE +N+CDNL DH+ FR EE A RA+ L+
Sbjct: 73 EVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ ISRDLRRQL+
Sbjct: 133 RWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDLRRQLY 186
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+E++F E+ KYGE+E +N+CDNL DH+ FR EE A +A+ L+
Sbjct: 73 EMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK ISR+LRR+L+
Sbjct: 133 RWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELY 186
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 82/114 (71%), Gaps = 8/114 (7%)
Query: 23 KIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH+++F+ED+F E +KYGEIE +N+CDNL DH+ FR E A +A L+
Sbjct: 75 EMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNN 134
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128
R++ GRP+ + SPVTDFREA CRQYE C R G+CNFMHLK ISR+LRR L+
Sbjct: 135 RWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLY 188
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 97/147 (65%), Gaps = 8/147 (5%)
Query: 23 KIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSLSG 74
++QEH++ F+E++F EL KYGEIE +N+CDNL DH+ FR EE RA+ LS
Sbjct: 73 EVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSN 132
Query: 75 RFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 134
R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS++L+RQL+GR RR
Sbjct: 133 RWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQNLQRQLYGRGPRR 192
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGR 161
S R + R R+H HGR
Sbjct: 193 RSPPRFHTGHHPRERNHRCSPDHWHGR 219
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
Query: 10 PGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREE 62
P + G R++ E F+ FYED+F E +KYGE+E L +CDN+ DH+ F+ E
Sbjct: 55 PIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYE 114
Query: 63 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122
E A A+ L+ R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG CNFMH K+ S
Sbjct: 115 ESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQ 174
Query: 123 LRRQLFGRYRR 133
L R L R+
Sbjct: 175 LLRDLVLAQRK 185
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 239 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 298
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR--------ISRDL------- 123
GR + +F PVT ++ A C +E C RG +CNF+H+ R +RD+
Sbjct: 299 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQT 358
Query: 124 ---------RRQLFGRYRRRHSRSRSRSRSP-----YRHRSHEDRSHSGH-GRRYDDRDK 168
RR+ G + +SR R R R+P Y+ +R S H G++ R
Sbjct: 359 GSSFGKNSERREKMGHHDHYYSRQRGR-RNPSPDHTYKRNGESERKKSSHRGKKSHKR-- 415
Query: 169 YYESRSRRHRSTSPSHRRGRSRS 191
+ R R SPS R R RS
Sbjct: 416 ---TSKSRERHNSPSRGRNRHRS 435
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I++ +E+FYED+ E K+GE+ + +C N + H+ ++ + A A S++GR
Sbjct: 222 EIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGR 281
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
++AG+ I +F VT ++ A C +Y + TC+RG CNF+H R
Sbjct: 282 YFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFR 327
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFY D+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 225 QQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 284
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
GR + +F PVT ++ A C +E C +G +CNF+H+ R
Sbjct: 285 GRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHVFR 324
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 23 KIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGR 75
+I + F DFY D+ E G++ + NL H+ ++ EE A +GR
Sbjct: 235 EIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGR 294
Query: 76 FYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKR 118
+YAGR + +F PVT ++ A C +E C RG +CNF+H+ R
Sbjct: 295 WYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHVFR 337
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Query: 28 FEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYAGR 80
+E+FYED+ E KYGE+ + +C N + H+ +R E A A +S++GR++AG+
Sbjct: 304 YEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGK 363
Query: 81 PIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMHLKR 118
+ +F ++ ++ A C +Y ++ TC+RG CNF+H R
Sbjct: 364 QVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIHCFR 404
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHM-------FREEEQAARALKSLSGRFYA 78
+ F DFYED+ E G++ + NL H+ ++ EE+ AL +GR+YA
Sbjct: 234 QQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYA 293
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR----DLRRQLFGRYRRR 134
GR + +F PVT ++ A C +E C RG +CNF+H+ R + R ++ R
Sbjct: 294 GRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRT 353
Query: 135 HSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYY------ESRSRRHRS------TSP 182
S S R H+D GRR D Y E +S RHR TS
Sbjct: 354 GSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSK 413
Query: 183 SHRR 186
S R
Sbjct: 414 SRER 417
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 13/182 (7%)
Query: 33 EDLFEELNKYGEIESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVD-FS 87
EDL E +K+G+I L + D +A FRE E+A +++L GR++ GR I +
Sbjct: 290 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWD 349
Query: 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ--LFGRYRRRHSRSRSRSRSP 145
TD++ E G+ F++ SR LRR + G R SR R S P
Sbjct: 350 GTTDYQ--VEETSREREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHP 407
Query: 146 YRHRSHEDRSHSGHG-RRYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREG 204
+ +G D +K+ ++ S + + GG P REG
Sbjct: 408 SMSNMKAQEATTGMAFEETIDENKFEKAEEGGESEGDASEKDAKE---GGSDGDHPEREG 464
Query: 205 SE 206
E
Sbjct: 465 GE 466
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)
Query: 7 MITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD----NLADHMFREE 62
M P +D + +PL +I+E DL E +K+G+I L + D +A FR+
Sbjct: 271 MFHP-MDFEDDPLVLNEIRE-------DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDP 322
Query: 63 EQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISR 121
E+A +++L GR++ GR I + TD++ E G+ F++ +R
Sbjct: 323 EEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWEAFLNAPEANR 380
Query: 122 DLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYD---DRDKYYESRSRRHR 178
LRR R SR+R S + S + + G ++ D K+ ++
Sbjct: 381 GLRRSDSVSASERAGPSRARHFSEHPSTSKMNAQETATGMAFEEPIDEKKFEKTEDGGEF 440
Query: 179 STSPSHRRGRSRSP 192
S + SP
Sbjct: 441 EEGASENNAKESSP 454
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 76/193 (39%), Gaps = 37/193 (19%)
Query: 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYA 78
DP + +EH D+ + YG++ ++ I N + F +E A +AL++
Sbjct: 100 FDPIRTKEH------DIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKIL 153
Query: 79 GRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRHSRS 138
R + V+++ D +E GG R RR L YRRR S
Sbjct: 154 DRVVSVEYALKDD---------DERDDRNGG-----------RSPRRSLSPVYRRRPSPD 193
Query: 139 RSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYESRSRRHRSTSPSHRR-----GRSRSPG 193
R SP + R R +GR Y+ + R SP + R GR RSPG
Sbjct: 194 YGRRPSPGQGR----RPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQRSPG 249
Query: 194 GRRYHS--PVREG 204
RY S PV G
Sbjct: 250 YDRYRSRSPVPRG 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,763,664
Number of Sequences: 539616
Number of extensions: 5180356
Number of successful extensions: 34281
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 553
Number of HSP's that attempted gapping in prelim test: 23959
Number of HSP's gapped (non-prelim): 5547
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)