Query 024601
Match_columns 265
No_of_seqs 258 out of 967
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202 U2 snRNP splicing fact 100.0 4.3E-43 9.4E-48 318.6 11.1 142 1-142 51-201 (260)
2 TIGR01645 half-pint poly-U bin 99.5 1.4E-13 3.1E-18 139.2 8.4 76 16-94 520-607 (612)
3 TIGR01622 SF-CC1 splicing fact 99.4 7.1E-13 1.5E-17 126.1 6.2 70 26-95 380-453 (457)
4 KOG0147 Transcriptional coacti 99.4 8.2E-13 1.8E-17 130.9 6.6 79 16-94 449-532 (549)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.9E-12 6.2E-17 123.3 7.2 78 17-94 416-506 (509)
6 KOG1548 Transcription elongati 99.2 4.9E-11 1.1E-15 113.6 7.8 78 16-93 271-356 (382)
7 PF13893 RRM_5: RNA recognitio 99.2 8.6E-11 1.9E-15 82.3 6.6 53 35-87 1-56 (56)
8 KOG0120 Splicing factor U2AF, 99.1 1.4E-10 3E-15 115.2 7.4 79 16-94 405-496 (500)
9 smart00361 RRM_1 RNA recogniti 99.0 5.5E-10 1.2E-14 82.3 6.7 57 29-85 3-70 (70)
10 KOG4207 Predicted splicing fac 99.0 2.9E-09 6.3E-14 96.4 9.4 67 26-92 21-95 (256)
11 KOG0107 Alternative splicing f 98.9 8.9E-09 1.9E-13 91.0 10.8 57 33-89 25-84 (195)
12 KOG1996 mRNA splicing factor [ 98.7 1.5E-08 3.2E-13 95.7 6.3 74 18-94 289-371 (378)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.7 3E-08 6.5E-13 91.0 7.7 61 29-89 280-348 (352)
14 KOG0124 Polypyrimidine tract-b 98.7 1.9E-08 4.1E-13 97.4 6.3 76 16-94 452-539 (544)
15 PLN03134 glycine-rich RNA-bind 98.6 6.8E-08 1.5E-12 81.3 6.8 59 30-88 46-112 (144)
16 smart00360 RRM RNA recognition 98.5 3.6E-07 7.9E-12 62.2 6.1 53 33-85 11-71 (71)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.4 4.4E-07 9.5E-12 83.3 6.8 56 33-88 18-81 (352)
18 PF00076 RRM_1: RNA recognitio 98.4 1.9E-06 4.1E-11 60.6 7.3 51 33-83 13-70 (70)
19 TIGR01648 hnRNP-R-Q heterogene 98.3 9.4E-07 2E-11 89.6 7.2 59 31-89 246-306 (578)
20 KOG0148 Apoptosis-promoting RN 98.3 5.6E-07 1.2E-11 84.3 4.5 97 32-131 76-188 (321)
21 smart00362 RRM_2 RNA recogniti 98.3 3.1E-06 6.7E-11 57.8 7.0 53 33-85 14-72 (72)
22 TIGR01659 sex-lethal sex-letha 98.3 1.5E-06 3.3E-11 82.9 6.3 60 29-88 118-185 (346)
23 TIGR01628 PABP-1234 polyadenyl 98.3 1.7E-06 3.7E-11 85.4 6.8 59 32-90 299-364 (562)
24 KOG0113 U1 small nuclear ribon 98.2 6.6E-06 1.4E-10 77.9 8.6 62 27-88 110-179 (335)
25 cd00590 RRM RRM (RNA recogniti 98.1 1.1E-05 2.3E-10 55.4 6.6 54 33-86 14-74 (74)
26 PLN03120 nucleic acid binding 98.1 5.7E-06 1.2E-10 76.8 6.5 57 32-89 18-79 (260)
27 TIGR01659 sex-lethal sex-letha 98.1 5.5E-06 1.2E-10 79.1 6.6 59 31-89 206-274 (346)
28 PF14259 RRM_6: RNA recognitio 98.1 1.1E-05 2.3E-10 57.9 6.4 51 33-83 13-70 (70)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 7.2E-06 1.6E-10 80.4 7.1 59 32-90 290-351 (481)
30 TIGR01628 PABP-1234 polyadenyl 98.1 6.7E-06 1.5E-10 81.2 6.7 56 33-88 15-78 (562)
31 KOG0117 Heterogeneous nuclear 98.0 8.7E-06 1.9E-10 80.4 6.7 61 29-89 270-330 (506)
32 KOG0109 RNA-binding protein LA 98.0 3.5E-06 7.5E-11 79.7 3.3 56 33-88 93-148 (346)
33 TIGR01622 SF-CC1 splicing fact 98.0 1.1E-05 2.3E-10 77.2 6.7 57 32-88 200-264 (457)
34 KOG0125 Ataxin 2-binding prote 98.0 1.2E-05 2.6E-10 77.1 5.9 62 27-88 105-172 (376)
35 COG0724 RNA-binding proteins ( 97.9 2.5E-05 5.5E-10 64.8 6.6 61 28-88 125-193 (306)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.9 2.3E-05 5.1E-10 76.9 6.9 57 33-89 17-77 (481)
37 TIGR01642 U2AF_lg U2 snRNP aux 97.9 2.6E-05 5.7E-10 75.4 6.7 60 30-89 307-374 (509)
38 KOG0114 Predicted RNA-binding 97.8 2.8E-05 6E-10 64.4 5.3 62 27-88 27-93 (124)
39 TIGR01645 half-pint poly-U bin 97.8 4E-05 8.6E-10 78.5 6.8 57 32-88 218-282 (612)
40 KOG0122 Translation initiation 97.8 3.5E-05 7.5E-10 71.4 5.6 57 32-88 203-267 (270)
41 KOG0130 RNA-binding protein RB 97.8 2.4E-05 5.2E-10 67.5 4.1 61 29-89 83-151 (170)
42 KOG0109 RNA-binding protein LA 97.8 2.7E-05 5.9E-10 73.8 4.9 90 34-123 18-126 (346)
43 KOG0110 RNA-binding protein (R 97.8 7.4E-05 1.6E-09 77.0 7.9 99 27-131 524-637 (725)
44 PLN03121 nucleic acid binding 97.7 7.2E-05 1.6E-09 69.0 6.8 56 32-88 19-79 (243)
45 KOG0415 Predicted peptidyl pro 97.7 4.6E-05 9.9E-10 74.0 5.0 90 33-122 254-357 (479)
46 KOG0127 Nucleolar protein fibr 97.7 5.9E-05 1.3E-09 76.3 5.6 61 33-93 132-200 (678)
47 KOG0117 Heterogeneous nuclear 97.6 7E-05 1.5E-09 74.2 5.1 66 29-100 94-168 (506)
48 KOG0123 Polyadenylate-binding 97.5 0.00018 3.9E-09 69.5 6.4 61 33-93 91-156 (369)
49 KOG0148 Apoptosis-promoting RN 97.5 0.00018 4E-09 67.7 6.1 57 33-89 179-237 (321)
50 KOG0105 Alternative splicing f 97.5 0.0001 2.2E-09 66.5 3.7 58 33-90 21-83 (241)
51 KOG0108 mRNA cleavage and poly 97.5 0.00014 2.9E-09 72.0 4.8 69 26-94 26-102 (435)
52 KOG4206 Spliceosomal protein s 97.4 0.00031 6.7E-09 64.1 6.0 60 29-88 24-88 (221)
53 TIGR01648 hnRNP-R-Q heterogene 97.4 0.00024 5.2E-09 72.4 5.7 57 31-87 71-135 (578)
54 PLN03213 repressor of silencin 97.3 0.00025 5.3E-09 71.5 4.8 57 32-88 24-86 (759)
55 COG5175 MOT2 Transcriptional r 97.2 0.0005 1.1E-08 66.7 5.9 88 37-130 139-240 (480)
56 KOG0121 Nuclear cap-binding pr 97.2 0.00031 6.8E-09 60.1 3.7 62 27-88 45-114 (153)
57 KOG0149 Predicted RNA-binding 97.2 0.00029 6.4E-09 64.9 3.7 61 28-89 22-90 (247)
58 KOG0123 Polyadenylate-binding 97.1 0.00081 1.8E-08 65.0 5.8 57 31-88 11-73 (369)
59 KOG4661 Hsp27-ERE-TATA-binding 96.9 0.00098 2.1E-08 68.2 4.7 58 31-88 418-483 (940)
60 KOG0126 Predicted RNA-binding 96.8 5.3E-05 1.1E-09 68.0 -4.6 60 28-87 45-112 (219)
61 KOG0145 RNA-binding protein EL 96.8 0.0022 4.8E-08 60.6 5.7 55 34-88 294-356 (360)
62 KOG0106 Alternative splicing f 96.8 0.0009 1.9E-08 60.9 2.9 57 32-88 15-71 (216)
63 smart00356 ZnF_C3H1 zinc finge 96.8 0.00085 1.8E-08 40.6 1.8 26 92-117 2-27 (27)
64 KOG0144 RNA-binding protein CU 96.7 0.0011 2.5E-08 65.6 3.3 63 32-94 138-210 (510)
65 KOG0111 Cyclophilin-type pepti 96.7 0.00085 1.8E-08 62.0 2.1 60 35-94 27-94 (298)
66 KOG0145 RNA-binding protein EL 96.5 0.0047 1E-07 58.4 5.8 57 33-89 56-120 (360)
67 KOG0131 Splicing factor 3b, su 96.4 0.003 6.4E-08 56.7 3.5 56 33-88 24-87 (203)
68 PF00642 zf-CCCH: Zinc finger 96.3 0.00098 2.1E-08 41.6 0.0 26 92-117 1-27 (27)
69 KOG1190 Polypyrimidine tract-b 96.2 0.016 3.6E-07 57.4 7.9 62 33-94 313-377 (492)
70 KOG0110 RNA-binding protein (R 96.2 0.0052 1.1E-07 63.8 4.5 67 26-92 621-695 (725)
71 KOG0106 Alternative splicing f 96.1 0.0034 7.3E-08 57.2 2.4 53 32-84 113-165 (216)
72 KOG0147 Transcriptional coacti 96.1 0.0062 1.3E-07 61.7 4.4 62 26-87 286-355 (549)
73 KOG0127 Nucleolar protein fibr 96.0 0.0061 1.3E-07 62.2 3.8 56 33-88 20-83 (678)
74 KOG4212 RNA-binding protein hn 95.9 0.0084 1.8E-07 60.0 4.2 60 27-86 545-607 (608)
75 KOG4660 Protein Mei2, essentia 95.9 0.0034 7.4E-08 63.5 1.5 54 32-85 89-145 (549)
76 PF14605 Nup35_RRM_2: Nup53/35 95.9 0.0095 2.1E-07 42.6 3.4 37 33-69 15-53 (53)
77 KOG4208 Nucleolar RNA-binding 95.6 0.02 4.4E-07 52.1 5.0 64 27-90 58-130 (214)
78 KOG0144 RNA-binding protein CU 95.5 0.017 3.7E-07 57.6 4.7 56 32-87 48-114 (510)
79 KOG0533 RRM motif-containing p 95.5 0.031 6.8E-07 51.7 6.1 61 28-88 93-160 (243)
80 PF08952 DUF1866: Domain of un 95.2 0.067 1.5E-06 46.2 6.9 66 27-94 44-110 (146)
81 KOG0132 RNA polymerase II C-te 95.0 0.051 1.1E-06 57.4 6.6 56 32-87 435-492 (894)
82 KOG0124 Polypyrimidine tract-b 95.0 0.012 2.6E-07 57.9 1.8 59 28-86 123-189 (544)
83 PF05172 Nup35_RRM: Nup53/35/4 94.7 0.089 1.9E-06 42.6 5.7 50 33-83 20-84 (100)
84 PF08777 RRM_3: RNA binding mo 94.4 0.038 8.3E-07 44.6 3.1 55 32-86 15-76 (105)
85 KOG0153 Predicted RNA-binding 94.4 0.12 2.5E-06 50.5 6.8 61 29-89 239-302 (377)
86 KOG0131 Splicing factor 3b, su 94.3 0.051 1.1E-06 49.0 4.0 59 35-93 113-180 (203)
87 PF15023 DUF4523: Protein of u 94.1 0.11 2.3E-06 45.5 5.5 53 33-86 105-158 (166)
88 PF04847 Calcipressin: Calcipr 93.8 0.14 3.1E-06 45.4 5.8 60 33-92 10-73 (184)
89 KOG0146 RNA-binding protein ET 93.3 0.051 1.1E-06 51.8 2.2 56 33-88 300-363 (371)
90 KOG0146 RNA-binding protein ET 93.3 0.1 2.2E-06 49.8 4.1 57 32-88 33-99 (371)
91 KOG4212 RNA-binding protein hn 92.9 0.19 4.1E-06 50.7 5.6 63 26-88 52-122 (608)
92 PF11608 Limkain-b1: Limkain b 92.9 0.11 2.5E-06 41.6 3.3 55 34-90 22-77 (90)
93 KOG2068 MOT2 transcription fac 91.2 0.094 2E-06 50.6 1.3 75 37-117 99-185 (327)
94 KOG0151 Predicted splicing reg 91.1 0.35 7.5E-06 51.1 5.3 57 33-89 189-256 (877)
95 KOG2314 Translation initiation 91.1 0.37 8E-06 49.8 5.4 51 31-81 77-134 (698)
96 KOG4285 Mitotic phosphoprotein 90.4 0.41 8.9E-06 46.2 4.7 58 33-92 211-270 (350)
97 KOG1548 Transcription elongati 89.4 0.96 2.1E-05 44.3 6.4 57 33-89 149-220 (382)
98 KOG1457 RNA binding protein (c 88.7 0.41 8.8E-06 44.8 3.2 40 50-89 75-117 (284)
99 KOG4454 RNA binding protein (R 87.3 0.64 1.4E-05 43.3 3.6 65 26-90 16-87 (267)
100 KOG0116 RasGAP SH3 binding pro 87.2 0.36 7.9E-06 48.0 2.1 59 28-87 298-364 (419)
101 KOG4209 Splicing factor RNPS1, 85.6 0.41 8.8E-06 43.9 1.4 60 27-87 110-177 (231)
102 KOG1847 mRNA splicing factor [ 84.1 0.6 1.3E-05 49.0 2.0 12 202-213 812-823 (878)
103 KOG4676 Splicing factor, argin 83.2 0.66 1.4E-05 46.2 1.8 48 30-78 163-214 (479)
104 KOG4368 Predicted RNA binding 83.1 3.1 6.7E-05 43.5 6.5 11 137-147 606-616 (757)
105 PF03880 DbpA: DbpA RNA bindin 82.7 1.1 2.4E-05 33.5 2.5 43 44-87 32-74 (74)
106 PF10309 DUF2414: Protein of u 82.6 2.5 5.4E-05 31.7 4.3 46 19-72 16-62 (62)
107 KOG1456 Heterogeneous nuclear 80.7 5 0.00011 40.1 6.7 56 34-89 304-362 (494)
108 PF11767 SET_assoc: Histone ly 80.3 4.2 9.1E-05 30.7 4.8 51 32-84 14-65 (66)
109 KOG4205 RNA-binding protein mu 80.2 0.79 1.7E-05 43.9 1.1 60 27-87 15-82 (311)
110 KOG4574 RNA-binding protein (c 77.9 3.1 6.8E-05 45.0 4.7 90 32-129 312-405 (1007)
111 KOG1855 Predicted RNA-binding 76.6 3.6 7.8E-05 41.5 4.5 45 29-73 242-307 (484)
112 KOG4307 RNA binding protein RB 75.5 3.5 7.6E-05 43.9 4.2 60 27-86 876-943 (944)
113 KOG1040 Polyadenylation factor 72.6 1.4 3E-05 42.6 0.5 27 91-117 74-100 (325)
114 KOG4205 RNA-binding protein mu 72.0 1.9 4.1E-05 41.4 1.3 60 27-87 106-173 (311)
115 KOG2494 C3H1-type Zn-finger pr 71.2 1.6 3.5E-05 42.3 0.6 28 90-117 32-61 (331)
116 KOG1190 Polypyrimidine tract-b 70.5 5.8 0.00013 40.0 4.3 58 34-91 166-229 (492)
117 KOG2135 Proteins containing th 69.2 3.3 7.2E-05 42.1 2.3 57 31-88 386-444 (526)
118 KOG0226 RNA-binding proteins [ 68.5 3.8 8.2E-05 38.9 2.4 33 54-86 234-266 (290)
119 KOG1995 Conserved Zn-finger pr 66.1 4.4 9.6E-05 39.7 2.4 56 33-88 81-152 (351)
120 COG5152 Uncharacterized conser 64.5 2.9 6.4E-05 38.5 0.8 84 34-117 59-165 (259)
121 KOG1456 Heterogeneous nuclear 63.1 7.8 0.00017 38.8 3.5 56 35-90 139-199 (494)
122 KOG1763 Uncharacterized conser 61.5 4.3 9.3E-05 39.3 1.4 42 89-130 87-129 (343)
123 KOG4210 Nuclear localization s 60.0 5.1 0.00011 37.8 1.6 65 27-92 194-266 (285)
124 KOG0120 Splicing factor U2AF, 60.0 7 0.00015 40.0 2.7 56 33-88 304-367 (500)
125 PF08675 RNA_bind: RNA binding 59.4 8.4 0.00018 30.9 2.5 41 33-73 23-63 (87)
126 COG5252 Uncharacterized conser 57.2 3.8 8.2E-05 38.7 0.2 48 80-131 75-123 (299)
127 PLN02435 probable UDP-N-acetyl 56.9 3.6 7.9E-05 41.8 0.1 64 27-93 390-472 (493)
128 KOG1813 Predicted E3 ubiquitin 56.7 4.3 9.2E-05 39.1 0.5 28 90-117 182-210 (313)
129 PTZ00339 UDP-N-acetylglucosami 52.3 12 0.00026 38.0 2.9 64 27-93 381-463 (482)
130 PF14608 zf-CCCH_2: Zinc finge 50.8 10 0.00023 21.8 1.3 13 104-116 7-19 (19)
131 KOG1677 CCCH-type Zn-finger pr 49.6 9.1 0.0002 35.7 1.5 37 85-121 168-205 (332)
132 KOG4368 Predicted RNA binding 48.8 15 0.00032 38.7 2.9 6 212-217 684-689 (757)
133 PF07576 BRAP2: BRCA1-associat 48.6 32 0.00069 28.2 4.3 36 44-79 40-81 (110)
134 KOG2591 c-Mpl binding protein, 47.1 15 0.00033 38.4 2.7 47 44-90 203-252 (684)
135 KOG2416 Acinus (induces apopto 46.2 9.5 0.00021 40.1 1.1 65 34-98 460-530 (718)
136 KOG4211 Splicing factor hnRNP- 46.0 23 0.00049 36.4 3.7 43 28-71 20-68 (510)
137 PF06185 YecM: YecM protein; 45.1 66 0.0014 29.0 6.1 61 20-84 4-74 (185)
138 PF15513 DUF4651: Domain of un 44.6 33 0.00071 25.9 3.5 24 29-52 5-28 (62)
139 KOG2888 Putative RNA binding p 44.5 11 0.00025 37.1 1.3 14 21-34 171-184 (453)
140 KOG3152 TBP-binding protein, a 43.8 21 0.00046 34.0 2.9 48 35-82 91-158 (278)
141 KOG2296 Integral membrane prot 36.0 21 0.00046 37.6 1.8 55 201-256 563-617 (673)
142 KOG0835 Cyclin L [General func 35.3 65 0.0014 31.9 4.8 19 59-78 180-198 (367)
143 PF07105 DUF1367: Protein of u 33.6 62 0.0013 29.5 4.1 38 25-73 156-193 (196)
144 KOG2494 C3H1-type Zn-finger pr 32.7 27 0.00059 34.1 1.8 28 89-117 66-93 (331)
145 KOG4206 Spliceosomal protein s 31.2 62 0.0014 30.0 3.8 56 31-86 162-218 (221)
146 KOG4676 Splicing factor, argin 30.7 46 0.001 33.6 3.0 54 34-88 23-87 (479)
147 KOG0115 RNA-binding protein p5 30.0 51 0.0011 31.5 3.1 47 33-79 46-99 (275)
148 PRK11634 ATP-dependent RNA hel 27.1 4.7E+02 0.01 27.3 9.8 42 45-87 519-560 (629)
149 PF03786 UxuA: D-mannonate deh 27.0 2E+02 0.0044 28.3 6.7 61 17-79 173-239 (351)
150 PF04059 RRM_2: RNA recognitio 26.3 3.2E+02 0.0069 22.0 6.7 54 16-78 10-71 (97)
151 COG5084 YTH1 Cleavage and poly 25.7 37 0.00081 32.5 1.4 31 91-121 101-131 (285)
152 KOG4019 Calcineurin-mediated s 25.1 48 0.001 30.1 1.9 48 41-88 38-88 (193)
153 KOG2185 Predicted RNA-processi 23.9 53 0.0011 33.4 2.1 41 82-122 128-168 (486)
154 COG2069 CdhD CO dehydrogenase/ 23.5 2.4E+02 0.0052 28.0 6.3 50 20-69 137-191 (403)
155 KOG0153 Predicted RNA-binding 23.4 38 0.00083 33.5 1.0 31 93-123 160-190 (377)
156 PRK13014 methionine sulfoxide 23.4 87 0.0019 28.1 3.2 62 59-120 106-171 (186)
157 cd04936 ACT_AKii-LysC-BS-like_ 22.9 1.7E+02 0.0037 19.5 4.0 46 31-76 16-61 (63)
158 KOG1040 Polyadenylation factor 22.9 36 0.00079 33.0 0.8 47 83-129 93-141 (325)
159 cd04922 ACT_AKi-HSDH-ThrA_2 AC 21.6 2E+02 0.0043 19.5 4.2 48 30-77 16-65 (66)
160 PF08734 GYD: GYD domain; Int 21.2 4E+02 0.0087 20.7 6.6 46 29-74 19-69 (91)
161 PRK11700 hypothetical protein; 21.0 4.9E+02 0.011 23.6 7.4 62 19-84 8-79 (187)
162 PF08156 NOP5NT: NOP5NT (NUC12 20.9 81 0.0017 23.6 2.1 31 38-73 35-65 (67)
163 cd04923 ACT_AK-LysC-DapG-like_ 20.7 2E+02 0.0043 19.1 4.0 47 31-77 16-62 (63)
164 KOG0804 Cytoplasmic Zn-finger 20.3 1.4E+02 0.003 30.8 4.2 46 34-79 90-142 (493)
165 KOG0112 Large RNA-binding prot 20.2 74 0.0016 35.1 2.4 53 35-87 472-528 (975)
No 1
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-43 Score=318.64 Aligned_cols=142 Identities=58% Similarity=1.017 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-hcCCeeEEEEecCCCCce-------ecCHHHHHHHHHHh
Q 024601 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHM-------FREEEQAARALKSL 72 (265)
Q Consensus 1 mYqnP~~~~~~~~~~~~~~d~eelqe~FdeFyEDV~eEfs-KyGeI~dV~V~~N~g~hl-------F~~eedA~kAik~L 72 (265)
|||||.+..+.+|++++.+++++||.+|++||||||.||+ |||+|++|+||+|.++|| |..+++|++|++.|
T Consensus 51 myq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~l 130 (260)
T KOG2202|consen 51 MYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDL 130 (260)
T ss_pred HHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHH
Confidence 8999999998888889999999999999999999999999 999999999999999988 99999999999999
Q ss_pred CCceeCCeeEEEEecCCCCcchhhhccccccCCCCCCccccCccccCCHHHHHHhhhcccccC-ccCCCCC
Q 024601 73 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRRH-SRSRSRS 142 (265)
Q Consensus 73 NGR~F~GR~I~vEfSpVtdFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~r~L~~~~~~~~-~~~~~rs 142 (265)
|||||+|+||+|+|+|||+|++|||++|+++.|++|++|||||++.++++|.+.|+..+.+.. .++++++
T Consensus 131 nnRw~~G~pi~ae~~pvT~~rea~C~~~e~~~C~rG~~CnFmH~k~~sr~L~r~l~~~~~~~~~~~sra~~ 201 (260)
T KOG2202|consen 131 NNRWYNGRPIHAELSPVTDFREAICGQFERTECSRGGACNFMHVKRLSRSLRRELYGRQRKRYPRRSRARA 201 (260)
T ss_pred cCccccCCcceeeecCcCchhhhhhcccccccCCCCCcCcchhhhhhhHHHHHHhhhhhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999987654 3333333
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=1.4e-13 Score=139.17 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCC------------ceecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLAD------------HMFREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 16 ~~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~------------hlF~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
.++|++++|+++ |++||++||+|||.|++|.||.+... +.|.++++|.+|++.||||||+||+|.
T Consensus 520 ~NMv~~~elded---l~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~ 596 (612)
T TIGR01645 520 RNMVTPQDIDEF---LEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVV 596 (612)
T ss_pred eCCCChHHhHHH---HHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEE
Confidence 477899998764 67999999999999999999996543 239999999999999999999999999
Q ss_pred EEecCCCCcch
Q 024601 84 VDFSPVTDFRE 94 (265)
Q Consensus 84 vEfSpVtdFre 94 (265)
|+|+....|..
T Consensus 597 a~~yd~~~f~~ 607 (612)
T TIGR01645 597 AEAYDQILFDH 607 (612)
T ss_pred EEEcCHHHhhc
Confidence 99999998864
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.36 E-value=7.1e-13 Score=126.11 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeeEEEEecCC----CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcchh
Q 024601 26 EHFEDFYEDLFEELNKYGEIESLNICDNL----ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 95 (265)
Q Consensus 26 e~FdeFyEDV~eEfsKyGeI~dV~V~~N~----g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFreA 95 (265)
.+|.+|++||.+||++||+|+.|.|+.+. +++.|.+.++|++|+++|||+||+||+|.|+|++.+.|..+
T Consensus 380 ~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 380 NFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred hHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhh
Confidence 57889999999999999999999998543 34559999999999999999999999999999999988654
No 4
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.36 E-value=8.2e-13 Score=130.92 Aligned_cols=79 Identities=28% Similarity=0.502 Sum_probs=69.4
Q ss_pred CCCCCHHH-HHHHHH-HHHHHHHHHHHhcCCeeEEEEecCC-CCce--ecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 16 GNPLDPRK-IQEHFE-DFYEDLFEELNKYGEIESLNICDNL-ADHM--FREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 16 ~~~~d~ee-lqe~Fd-eFyEDV~eEfsKyGeI~dV~V~~N~-g~hl--F~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
.++|||.+ .+..|+ +|.|||.+||+|||+|.+|.|..|. |.|. |.+++.|..|+++||||||+||.|+|.|.|++
T Consensus 449 ~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 449 SNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred hhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 47888854 456776 9999999999999999999999998 4443 99999999999999999999999999999998
Q ss_pred Ccch
Q 024601 91 DFRE 94 (265)
Q Consensus 91 dFre 94 (265)
+|..
T Consensus 529 ~Y~~ 532 (549)
T KOG0147|consen 529 RYHS 532 (549)
T ss_pred hhhh
Confidence 7643
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.31 E-value=2.9e-12 Score=123.32 Aligned_cols=78 Identities=22% Similarity=0.419 Sum_probs=68.5
Q ss_pred CCCCHHHHH--HHHHHHHHHHHHHHHhcCCeeEEEEecCC-----------CCceecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 17 NPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNL-----------ADHMFREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 17 ~~~d~eelq--e~FdeFyEDV~eEfsKyGeI~dV~V~~N~-----------g~hlF~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
+++++++|. +.|+++.+||+++|++||.|+.|.|+... +++.|.++++|++||.+|||++|+|++|.
T Consensus 416 N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 416 NLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred cCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 556777775 57899999999999999999999998641 35669999999999999999999999999
Q ss_pred EEecCCCCcch
Q 024601 84 VDFSPVTDFRE 94 (265)
Q Consensus 84 vEfSpVtdFre 94 (265)
|.|++...|..
T Consensus 496 ~~~~~~~~~~~ 506 (509)
T TIGR01642 496 AAFYGEDCYKA 506 (509)
T ss_pred EEEeCHHHhhc
Confidence 99999887753
No 6
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.18 E-value=4.9e-11 Score=113.59 Aligned_cols=78 Identities=28% Similarity=0.597 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHH---HHHHHHHHHHHHHhcCCeeEEEEecCCCC----ceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 16 GNPLDPRKIQEH---FEDFYEDLFEELNKYGEIESLNICDNLAD----HMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 16 ~~~~d~eelqe~---FdeFyEDV~eEfsKyGeI~dV~V~~N~g~----hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
-++|+++++... ..++.+||.++|+|||.|..|+|+++..+ |.|.+.++|..||+.|+||||+||+|+|+++.
T Consensus 271 kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 271 KNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred eecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 478999998744 67899999999999999999999977644 23999999999999999999999999999985
Q ss_pred -CCCcc
Q 024601 89 -VTDFR 93 (265)
Q Consensus 89 -VtdFr 93 (265)
.+.|.
T Consensus 351 G~t~~~ 356 (382)
T KOG1548|consen 351 GKTKFQ 356 (382)
T ss_pred Ccceee
Confidence 34553
No 7
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=8.6e-11 Score=82.33 Aligned_cols=53 Identities=32% Similarity=0.642 Sum_probs=47.5
Q ss_pred HHHHHHhcCCeeEEEEecCC---CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 35 LFEELNKYGEIESLNICDNL---ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 35 V~eEfsKyGeI~dV~V~~N~---g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
|+..|++||+|.+|.+..+. +++.|.+.++|.+|++.|||.+|+|++|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999999865 556699999999999999999999999999986
No 8
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.4e-10 Score=115.16 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=71.0
Q ss_pred CCCCCHHHHH--HHHHHHHHHHHHHHHhcCCeeEEEEecCC-C----------CceecCHHHHHHHHHHhCCceeCCeeE
Q 024601 16 GNPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNL-A----------DHMFREEEQAARALKSLSGRFYAGRPI 82 (265)
Q Consensus 16 ~~~~d~eelq--e~FdeFyEDV~eEfsKyGeI~dV~V~~N~-g----------~hlF~~eedA~kAik~LNGR~F~GR~I 82 (265)
.++||+++|. ++|++|+|||..||+|||.|..|.|+... . |+.|++.++|++|+.+|+||.|++|.|
T Consensus 405 ~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 405 TNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred hhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 4788999996 78999999999999999999999999873 1 233999999999999999999999999
Q ss_pred EEEecCCCCcch
Q 024601 83 IVDFSPVTDFRE 94 (265)
Q Consensus 83 ~vEfSpVtdFre 94 (265)
.+.|+++.+|..
T Consensus 485 vtsYydeDkY~~ 496 (500)
T KOG0120|consen 485 VASYYDEDKYHA 496 (500)
T ss_pred EEEecCHHHhhc
Confidence 999999988853
No 9
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=5.5e-10 Score=82.26 Aligned_cols=57 Identities=37% Similarity=0.631 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCeeEEE--EecC---------CCCceecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 29 EDFYEDLFEELNKYGEIESLN--ICDN---------LADHMFREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~--V~~N---------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
++|++.+.++|++||+|.+|. +... .+++.|.+.++|.+|++.|||++|+||+|.|.
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 356677788888999999984 3322 14566999999999999999999999999873
No 10
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.96 E-value=2.9e-09 Score=96.39 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 024601 26 EHFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 26 e~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF 92 (265)
--|-+.-+||...|+|||.|.+|+|+.+ ++||.|....+|++|+++|+|+.++|+.|.|+|+....-
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCCC
Confidence 3455666789999999999999999975 578889999999999999999999999999999864443
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=8.9e-09 Score=90.99 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCeeEEEEecCC---CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL---ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~---g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
.||..+|.+||+|..|||..|+ +|+.|++..+|++|+..|+|+.|.|..|.|||+..
T Consensus 25 ~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 25 RELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred HHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4577889999999999999875 66779999999999999999999999999999964
No 12
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.74 E-value=1.5e-08 Score=95.69 Aligned_cols=74 Identities=24% Similarity=0.463 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCC---------ceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 18 PLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLAD---------HMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 18 ~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~---------hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+|.+.+..+ +|..+|.+||+|||+|..|.|....++ +.|+..++|.+|+-.||||||+||.|.|.|+.
T Consensus 289 mVg~gevd~---elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 289 MVGAGEVDE---ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred hcCcccccH---HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 334444443 556799999999999999999876543 33999999999999999999999999999999
Q ss_pred CCCcch
Q 024601 89 VTDFRE 94 (265)
Q Consensus 89 VtdFre 94 (265)
+.+|..
T Consensus 366 ~ekfs~ 371 (378)
T KOG1996|consen 366 LEKFSN 371 (378)
T ss_pred HHhhhh
Confidence 999864
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.73 E-value=3e-08 Score=90.97 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+.-.++|.+.|++||.|+.|.|+.+ ++++.|.+.++|..||.+|||.+|+||+|.|.|...
T Consensus 280 ~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 280 DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 3455789999999999999999865 367889999999999999999999999999999753
No 14
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.9e-08 Score=97.36 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCC------C------CceecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL------A------DHMFREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 16 ~~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~------g------~hlF~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
-++++|++|.+. +.++|.+||+|||.|.+|.|.... + |+.|+...++.+|..+|+||||+||.|.
T Consensus 452 RNMV~P~DiDe~---LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 452 RNMVDPKDIDED---LEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred eccCChhhhhhH---HHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 478899998864 558999999999999999997532 1 2339999999999999999999999999
Q ss_pred EEecCCCCcch
Q 024601 84 VDFSPVTDFRE 94 (265)
Q Consensus 84 vEfSpVtdFre 94 (265)
+|++.-..|..
T Consensus 529 AE~YDQ~~FD~ 539 (544)
T KOG0124|consen 529 AEVYDQERFDN 539 (544)
T ss_pred hhhhhhhcccc
Confidence 99987766643
No 15
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.64 E-value=6.8e-08 Score=81.27 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 30 DFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
...+||.+.|++||+|++|.|+.+ ++++.|.+.++|++||+.|||..++|++|.|+++.
T Consensus 46 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 344688889999999999999754 46677999999999999999999999999999863
No 16
>smart00360 RRM RNA recognition motif.
Probab=98.50 E-value=3.6e-07 Score=62.15 Aligned_cols=53 Identities=40% Similarity=0.619 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
+||...|++||.|..+.|+.+. +++.|.+.++|..|++.|++..|.|+.|.|+
T Consensus 11 ~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 11 EELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5677788899999999998763 3455999999999999999999999999873
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.43 E-value=4.4e-07 Score=83.33 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||++.|++||+|.+|.|+.+ ++++.|.++++|.+||..|||.++.|++|.|+++.
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 18 EEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred HHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467788999999999999864 36777999999999999999999999999999874
No 18
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.36 E-value=1.9e-06 Score=60.56 Aligned_cols=51 Identities=37% Similarity=0.555 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 33 EDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
++|.+.|++||+|..+.|..+. +++.|.+.++|++|++.|||..|+|++|+
T Consensus 13 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 13 EELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 5677889999999999999852 34559999999999999999999999985
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.34 E-value=9.4e-07 Score=89.64 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhc--CCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 31 FYEDLFEELNKY--GEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 31 FyEDV~eEfsKy--GeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
-.++|.++|++| |+|++|.+.++++++.|.+.++|++|++.|||..|+|++|.|++++-
T Consensus 246 tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 246 TEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred CHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 347788899999 99999999999999999999999999999999999999999999853
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.6e-07 Score=84.27 Aligned_cols=97 Identities=20% Similarity=0.375 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcchhh-hccccc
Q 024601 32 YEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREAT-CRQYEE 102 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFreA~-Cr~~e~ 102 (265)
+|+|++.|.+||+|.+..|+++. +|+-|-..++|+.||..|||.|+++|.|...++...--.+.. --.|++
T Consensus 76 ~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfde 155 (321)
T KOG0148|consen 76 NEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDE 155 (321)
T ss_pred hHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHH
Confidence 57899999999999999999864 566699999999999999999999999999988543211100 011211
Q ss_pred -------cCCCCCCccccCccccCCHHHHHHhhhcc
Q 024601 103 -------NTCNRGGYCNFMHLKRISRDLRRQLFGRY 131 (265)
Q Consensus 103 -------g~C~RGg~CNFmH~~~~sr~L~r~L~~~~ 131 (265)
..|.= ||-=+-- -.+.+|.+++|..+
T Consensus 156 V~NQssp~NtsV--Y~G~I~~-~lte~~mr~~Fs~f 188 (321)
T KOG0148|consen 156 VYNQSSPDNTSV--YVGNIAS-GLTEDLMRQTFSPF 188 (321)
T ss_pred HhccCCCCCceE--EeCCcCc-cccHHHHHHhcccC
Confidence 22221 2321111 47899999998763
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=98.30 E-value=3.1e-06 Score=57.83 Aligned_cols=53 Identities=42% Similarity=0.616 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCC------CCceecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 33 EDLFEELNKYGEIESLNICDNL------ADHMFREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~------g~hlF~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
++|...|.+||+|..+.+..+. +++.|.+.++|+.|++.|+|..|.|++|.|.
T Consensus 14 ~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 14 EDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 4566677899999999998764 3344999999999999999999999999873
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.26 E-value=1.5e-06 Score=82.86 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+...++|++.|++||+|++|.|+.+ +++|.|.++++|++||+.|||..+.+++|.|.++.
T Consensus 118 ~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 118 DMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 3445788889999999999999864 36788999999999999999999999999999864
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.26 E-value=1.7e-06 Score=85.41 Aligned_cols=59 Identities=29% Similarity=0.457 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 32 YEDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
.++|.+.|++||+|.++.|..+ .+++.|.+.++|.+|+..|||.+|+|++|.|.++...
T Consensus 299 ~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 299 DEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 4678899999999999999764 3567799999999999999999999999999998543
No 24
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=6.6e-06 Score=77.90 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.|++-..+|..||++||+|+.|.|+.+ ++|+.|+++.+...|.+..+|..++|+.|.|++--
T Consensus 110 nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 110 NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 456667889999999999999999976 47888999999999999999999999999999853
No 25
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.12 E-value=1.1e-05 Score=55.40 Aligned_cols=54 Identities=43% Similarity=0.696 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 33 EDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
++|...|..||+|..+.++... +.+.|.+.++|..|++.|++..|.|+.|.|.+
T Consensus 14 ~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 14 EDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5677888899999999998753 33449999999999999999999999999864
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.11 E-value=5.7e-06 Score=76.84 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCeeEEEEecC-----CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 32 YEDLFEELNKYGEIESLNICDN-----LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N-----~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
.+||.+.|+.||+|++|.|+.+ ++++.|.++++|..||. |||..+.|++|.|+.++.
T Consensus 18 E~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 18 ERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 3578888999999999999754 46788999999999995 999999999999998753
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.11 E-value=5.5e-06 Score=79.08 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCC--eeEEEEecCC
Q 024601 31 FYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAG--RPIIVDFSPV 89 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~G--R~I~vEfSpV 89 (265)
..+||.+.|++||+|+.|.|..+ .+++.|.+.++|++||+.||+..+.| ++|.|.++..
T Consensus 206 tee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 206 TDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred cHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 34688889999999999998865 35677999999999999999999977 7888888753
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.09 E-value=1.1e-05 Score=57.87 Aligned_cols=51 Identities=35% Similarity=0.506 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 33 EDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
+||.+.|+.||.|..|.+..+. +++.|.++++|..|++.++|.+|.|+.|.
T Consensus 13 ~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 13 EDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 5788899999999999999874 33459999999999999999999999984
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.09 E-value=7.2e-06 Score=80.44 Aligned_cols=59 Identities=29% Similarity=0.331 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 32 YEDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
.++|++.|++||.|..|.|..+ .+++.|.+.++|..||..|||..+.|++|.|.++...
T Consensus 290 ~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 290 CDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3679999999999999999864 4677799999999999999999999999999998543
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.07 E-value=6.7e-06 Score=81.23 Aligned_cols=56 Identities=23% Similarity=0.501 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|++.|++||+|++|.||.+. +++.|.+.++|++|+..||+..+.|++|.+.++.
T Consensus 15 ~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 15 AKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 5677788999999999999753 5677999999999999999999999999999874
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=8.7e-06 Score=80.40 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
....|-|..+|++||.|+.|+.+++++|+.|.+-++|.+|++.|||..++|.+|.|.|++-
T Consensus 270 ~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 270 STTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 4666788889999999999999999999999999999999999999999999999999853
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.02 E-value=3.5e-06 Score=79.69 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+|+..|+|||+|+++.|.++.+++.|.-.++|..||+.|||+.|.|++++|++|.
T Consensus 93 ~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 93 QELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred HHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 46888999999999999999999999999999999999999999999999999985
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.02 E-value=1.1e-05 Score=77.17 Aligned_cols=57 Identities=28% Similarity=0.512 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.++|.+.|++||+|..|.|..+ .+++.|.+.++|.+|++.|||..+.|++|.|.|+.
T Consensus 200 e~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 200 EQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3567778899999999998853 35677999999999999999999999999999975
No 34
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=77.07 Aligned_cols=62 Identities=26% Similarity=0.291 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
-|.--.-||...|+|||+|.+|.|+-| +|||+|++.+||++|-.+|+|....||+|.|..+.
T Consensus 105 PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 105 PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 455445799999999999999999865 58899999999999999999999999999998864
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.93 E-value=2.5e-05 Score=64.78 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++...++|.++|.+||+|..|.|..+. +++.|.++++|..|+..|+|.+|.|++|.|.+..
T Consensus 125 ~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 125 YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 455567899999999999988887653 4566999999999999999999999999999965
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.90 E-value=2.3e-05 Score=76.86 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHH--hCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKS--LSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~--LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+.. .+++.|.++++|.+||+. +|+..+.|++|.|+|+..
T Consensus 17 ~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 17 ADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred HHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 467778899999999998864 577789999999999997 488999999999999853
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.88 E-value=2.6e-05 Score=75.42 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 30 DFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
...++|.+.|++||.|..+.|+.+ ++++.|.+.++|..||..|||..+.|+.|.|.++..
T Consensus 307 ~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 307 LGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 344688889999999999998754 356779999999999999999999999999999753
No 38
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.84 E-value=2.8e-05 Score=64.45 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.|.-..|++.+.|.+||.|..|.|-. ..+|++|++..+|.+|+..|+|-.+.++.+.|-++.
T Consensus 27 p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 27 PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 56666788999999999999999853 346788999999999999999999999999998874
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.80 E-value=4e-05 Score=78.49 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.++|...|++||+|+.+.|..+ ++|+.|.+.++|.+||..|||..++|+.|.|..+-
T Consensus 218 eedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 218 ETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3678889999999999999764 35677999999999999999999999999998863
No 40
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=3.5e-05 Score=71.42 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
..||.+.|.+||.|..|+|..+ ++|+.|.+.++|++||..|||.-|+--.|.|||+.
T Consensus 203 E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 203 EDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred hhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4678888899999999999875 46777999999999999999999999999999985
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.78 E-value=2.4e-05 Score=67.49 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC--CCC------ceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN--LAD------HMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N--~g~------hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+...+||.+.|+.||+|.+|.+--+ .++ +.|++.++|++||.+|||..+-|..|.|+|+-|
T Consensus 83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4455899999999999999887533 233 339999999999999999999999999999744
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.78 E-value=2.7e-05 Score=73.76 Aligned_cols=90 Identities=22% Similarity=0.322 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc---------chhhhcccc---
Q 024601 34 DLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF---------REATCRQYE--- 101 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF---------reA~Cr~~e--- 101 (265)
+|...|++||+|.++.|++|.+|+..++...|.+||.+|+|-.++|..|.||-|+-..- ..-+|...|
T Consensus 18 elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa 97 (346)
T KOG0109|consen 18 ELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRA 97 (346)
T ss_pred HHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhh
Confidence 46777999999999999999999999999999999999999999999999999864311 112344222
Q ss_pred -------ccCCCCCCccccCccccCCHHH
Q 024601 102 -------ENTCNRGGYCNFMHLKRISRDL 123 (265)
Q Consensus 102 -------~g~C~RGg~CNFmH~~~~sr~L 123 (265)
..+|..-....|+|+....-..
T Consensus 98 ~fe~ygpviecdivkdy~fvh~d~~eda~ 126 (346)
T KOG0109|consen 98 KFEKYGPVIECDIVKDYAFVHFDRAEDAV 126 (346)
T ss_pred hhcccCCceeeeeecceeEEEEeeccchH
Confidence 2578888888999998877554
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=7.4e-05 Score=77.02 Aligned_cols=99 Identities=23% Similarity=0.332 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEec-----------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcchh
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICD-----------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 95 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~-----------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFreA 95 (265)
.|++..+++...|.++|.|..+.|.. .++|+.|.++++|+.|+++|+|..++|..|.|.||+ .-..+
T Consensus 524 nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~--~k~~~ 601 (725)
T KOG0110|consen 524 NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE--NKPAS 601 (725)
T ss_pred CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc--Ccccc
Confidence 68888999999999999999998763 235667999999999999999999999999999998 11111
Q ss_pred hhccccccCCCCCCccccCccccCCHHH----HHHhhhcc
Q 024601 96 TCRQYEENTCNRGGYCNFMHLKRISRDL----RRQLFGRY 131 (265)
Q Consensus 96 ~Cr~~e~g~C~RGg~CNFmH~~~~sr~L----~r~L~~~~ 131 (265)
.-+ ..|+.-..|+=+||+.++-.. .++||..+
T Consensus 602 ~~g----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 602 TVG----KKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred ccc----cccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 111 578888889999999888765 56777764
No 44
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.74 E-value=7.2e-05 Score=69.00 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCeeEEEEecC-----CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN-----LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N-----~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||++.|+.||+|.+|.|+.+ ++++.|.++++|+.|+ .|||..+.+++|.+.-++
T Consensus 19 E~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 19 EKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4578889999999999999875 3667799999999998 899999999999887754
No 45
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=4.6e-05 Score=74.01 Aligned_cols=90 Identities=24% Similarity=0.358 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC-CCC--cchhh---hc
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP-VTD--FREAT---CR 98 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp-Vtd--FreA~---Cr 98 (265)
|||...|+.||+|..+.|+++. +|+.|.+.+++++|.=.|++-.++.|.|+|+||. |.. |+..- -.
T Consensus 254 eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k~~~~~~ 333 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQKGSQKET 333 (479)
T ss_pred cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhcccccccccc
Confidence 6888899999999999999864 5566999999999999999999999999999984 443 43211 11
Q ss_pred cccccCCCCCCccccCccccCCHH
Q 024601 99 QYEENTCNRGGYCNFMHLKRISRD 122 (265)
Q Consensus 99 ~~e~g~C~RGg~CNFmH~~~~sr~ 122 (265)
.+-.-.|..+..-+|+|-.++.+-
T Consensus 334 d~~~~d~~~~~~~k~~~kd~~~~~ 357 (479)
T KOG0415|consen 334 DHRAKDCVGGPSSKFIHKDQNRPR 357 (479)
T ss_pred chhhhccccCCcccchhccCCCCC
Confidence 122357999999999998877643
No 46
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.67 E-value=5.9e-05 Score=76.30 Aligned_cols=61 Identities=26% Similarity=0.464 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC-CCCcc
Q 024601 33 EDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP-VTDFR 93 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp-VtdFr 93 (265)
.||...|++||.|.+|.|+.+. +|+.|....+|.+|++.|||..|+||+|-|+|+- -..|.
T Consensus 132 ~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 132 PDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred HHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 5889999999999999999764 5677999999999999999999999999999973 34443
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.62 E-value=7e-05 Score=74.18 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCcee-CCeeEEEEecCCCCcchhhhcc
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFY-AGRPIIVDFSPVTDFREATCRQ 99 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F-~GR~I~vEfSpVtdFreA~Cr~ 99 (265)
|.|.+||...|+|-|+|-+|.|..+ .+|++|.+.++|++||+.||+..| .|+.|.|.+| .+.||+
T Consensus 94 D~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S------van~RL 167 (506)
T KOG0117|consen 94 DVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS------VANCRL 167 (506)
T ss_pred cccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe------eeccee
Confidence 4566889999999999999999865 367889999999999999999988 5999999987 566666
Q ss_pred c
Q 024601 100 Y 100 (265)
Q Consensus 100 ~ 100 (265)
|
T Consensus 168 F 168 (506)
T KOG0117|consen 168 F 168 (506)
T ss_pred E
Confidence 5
No 48
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00018 Score=69.52 Aligned_cols=61 Identities=25% Similarity=0.446 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCCC-----CceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 33 EDLFEELNKYGEIESLNICDNLA-----DHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g-----~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
.+|++.|+.||+|+.++|..+.. ++.|+++++|.+||+.|||..+.|++|.|....-...+
T Consensus 91 ~~~~d~f~~~g~ilS~kv~~~~~g~kg~FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 91 KSLYDTFSEFGNILSCKVATDENGSKGYFVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHHHHhhcCeeEEEEEEcCCCceeeEEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 46788899999999999987642 56699999999999999999999999999887544443
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00018 Score=67.71 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|+..|+.||+|.+|.|.+.. +|+.|++.|.|.+||..|||...+|.+|.|-+-+.
T Consensus 179 ~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 179 DLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 4677789999999999998764 66779999999999999999999999999988654
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.46 E-value=0.0001 Score=66.45 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC-----CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-----LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-----~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
.||.+.|.|||.|.+|.+... ++|+.|++..+|++||..-+|--|+|-.|.|||..-.
T Consensus 21 keieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 21 KEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 467777899999999988643 3567799999999999999999999999999998654
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.46 E-value=0.00014 Score=72.02 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcch
Q 024601 26 EHFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 94 (265)
Q Consensus 26 e~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFre 94 (265)
..|+...++|...|++.|.|.++.+..+ ++|+.|.++++|+.||..|||..|.||+|.|+|..-.+-++
T Consensus 26 ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 26 IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAE 102 (435)
T ss_pred CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhH
Confidence 3556666789999999999999988765 35677999999999999999999999999999987655433
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.40 E-value=0.00031 Score=64.07 Aligned_cols=60 Identities=23% Similarity=0.504 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+++..-|+..|+.||+|.+|.++. +-++++|.+++.|..|+.+|+|.-|=|+++.+.|+.
T Consensus 24 ~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 24 DELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred HHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 344557888999999999999985 447788999999999999999999999999999985
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.39 E-value=0.00024 Score=72.44 Aligned_cols=57 Identities=28% Similarity=0.282 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeC-CeeEEEEec
Q 024601 31 FYEDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYA-GRPIIVDFS 87 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~-GR~I~vEfS 87 (265)
..++|.+.|++||+|.+|.|+.+ ++++.|.+.++|++||+.|||..+. |+.|.|..+
T Consensus 71 tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 71 YEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 34678888999999999999754 4677899999999999999999995 888766644
No 54
>PLN03213 repressor of silencing 3; Provisional
Probab=97.32 E-value=0.00025 Score=71.53 Aligned_cols=57 Identities=12% Similarity=0.317 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCeeEEEEecC----CCCceecCH--HHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN----LADHMFREE--EQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N----~g~hlF~~e--edA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||...|+.||.|.+|.|++. ++|+.|... .++.+||..|||..+.||.|.|+.+.
T Consensus 24 EDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 24 RDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3577778999999999999953 466778866 78999999999999999999999885
No 55
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.25 E-value=0.0005 Score=66.65 Aligned_cols=88 Identities=24% Similarity=0.507 Sum_probs=66.8
Q ss_pred HHHHhcCCeeEEEEecCC------CC-----ceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcchhhhcccccc-C
Q 024601 37 EELNKYGEIESLNICDNL------AD-----HMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN-T 104 (265)
Q Consensus 37 eEfsKyGeI~dV~V~~N~------g~-----hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFreA~Cr~~e~g-~ 104 (265)
+.|.+||+|..|+|-+.. +. +.|.+.++|..||.+.+|...+||.|.|.|-. | .-|..|..+ .
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT-T----KYCtsYLRn~~ 213 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT-T----KYCTSYLRNAV 213 (480)
T ss_pred hhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc-h----HHHHHHHcCCC
Confidence 468999999999997532 12 23999999999999999999999999998853 3 348888766 5
Q ss_pred CCCCCccccCccccCCHHH--HHHhhhc
Q 024601 105 CNRGGYCNFMHLKRISRDL--RRQLFGR 130 (265)
Q Consensus 105 C~RGg~CNFmH~~~~sr~L--~r~L~~~ 130 (265)
|+. +.|-|||-..+-.+. +++|-..
T Consensus 214 CpN-p~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 214 CPN-PDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred CCC-CCeeeecCCCcccccccHHHHhhh
Confidence 765 679999976655442 4455443
No 56
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.22 E-value=0.00031 Score=60.14 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEec--------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICD--------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~--------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.|-+..|.|++.|++.|+|..|++-- .++|++|-+.++|+.|++.|||.-++-++|.+++-+
T Consensus 45 SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 45 SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56777899999999999999988753 346677999999999999999999999999999863
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.21 E-value=0.00029 Score=64.89 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
|++--|+|+..|++||+|++.+|+.+ .+|++|.+.+.|.+|++..| -.++||...|.|+-+
T Consensus 22 w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 22 WETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred cccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 55666789999999999998877643 47889999999999999987 457888888877654
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00081 Score=65.03 Aligned_cols=57 Identities=25% Similarity=0.497 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCCce------ecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 31 FYEDLFEELNKYGEIESLNICDNLADHM------FREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N~g~hl------F~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
...+|++.|+.+|+|+.|.||++. .-+ |.+..+|++||+.||...+.|++|.+-++-
T Consensus 11 ~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 11 TEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred ChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 345789999999999999999987 443 999999999999999999999999998874
No 59
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.92 E-value=0.00098 Score=68.24 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 31 FYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
-.-||...|+|||+|+-.+|+.|. +||+.++..+|.+||..|+-..+-||.|.||-+.
T Consensus 418 RAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 418 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred hhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 346899999999999999999884 6788999999999999999999999999999874
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.83 E-value=5.3e-05 Score=67.98 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
|+....||...|++||+|++|.+.++. +|-.|++..+...||..|||-.+.||.|.|+..
T Consensus 45 ~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 45 YELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 455567899999999999999999864 333499999999999999999999999999874
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0022 Score=60.56 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 34 DLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
-||..|..||.|.+|+|.+++ +|+...+-++|..||..|||--+++|.|.|.|-.
T Consensus 294 ~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 294 ILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred HHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 488999999999999998765 5666888999999999999999999999998853
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=0.0009 Score=60.89 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||...|.+||+|.+|.+...++++.|.++.+|.+||..|||+.|.|-.+.+|+..
T Consensus 15 ~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 15 ERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred hhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 368999999999999999999999999999999999999999999999999998865
No 63
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.77 E-value=0.00085 Score=40.58 Aligned_cols=26 Identities=23% Similarity=0.732 Sum_probs=22.8
Q ss_pred cchhhhccccccCCCCCCccccCccc
Q 024601 92 FREATCRQYEENTCNRGGYCNFMHLK 117 (265)
Q Consensus 92 FreA~Cr~~e~g~C~RGg~CNFmH~~ 117 (265)
++..+|..|..|.|.+|..|.|+|..
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 45678999999999999999999963
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.0011 Score=65.64 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCcee---CCeeEEEEecCCCCcch
Q 024601 32 YEDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFY---AGRPIIVDFSPVTDFRE 94 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F---~GR~I~vEfSpVtdFre 94 (265)
+.||.+.|++||.|+++.|.++. +|+.|++-+.|..||++|||.+= .-.||+|-|+.-..-++
T Consensus 138 e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 138 ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred HHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 47999999999999999998754 56779999999999999999763 46899999986544333
No 65
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00085 Score=62.04 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=50.6
Q ss_pred HHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcch
Q 024601 35 LFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 94 (265)
Q Consensus 35 V~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFre 94 (265)
|...|--||.|.+|.|+-+ ++|+.|...++|..||..||+..+-||.|.|.|+.....++
T Consensus 27 LhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 27 LHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred HHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 3445678999999999965 46777999999999999999999999999999986555444
No 66
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.0047 Score=58.42 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|+..|+..|+|+.+++.++. +|+-|-+++||++||..|||-.+--+.|.|.|+..
T Consensus 56 dE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 56 DELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred HHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4677788999999999999863 55669999999999999999999999999999843
No 67
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=96.39 E-value=0.003 Score=56.74 Aligned_cols=56 Identities=34% Similarity=0.376 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+-|++.|-+-|+|++|.|+++ ++|+.|.++++|+-||+.||.-.+=||+|.|.-+.
T Consensus 24 ~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 24 ELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 347788889999999999974 46777999999999999999999999999998764
No 68
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.33 E-value=0.00098 Score=41.62 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=19.1
Q ss_pred cchhhhccccc-cCCCCCCccccCccc
Q 024601 92 FREATCRQYEE-NTCNRGGYCNFMHLK 117 (265)
Q Consensus 92 FreA~Cr~~e~-g~C~RGg~CNFmH~~ 117 (265)
|+..+|..|.. |.|+.|..|+|+|..
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 45678998866 999999999999963
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.24 E-value=0.016 Score=57.41 Aligned_cols=62 Identities=26% Similarity=0.412 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCce---ecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcch
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHM---FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 94 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hl---F~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFre 94 (265)
+-||..|+-||.|..|+|..|..++. +++...|+-|+..|+|..+-|++|.|.+|.-++-.-
T Consensus 313 d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 313 DVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 45899999999999999999987754 999999999999999999999999999998665543
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.20 E-value=0.0052 Score=63.80 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 024601 26 EHFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 26 e~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF 92 (265)
-.|+..+.+|+..|..||.|.+|.|+.- ++++.|-+..+|.+|+++|.+..|-||.|+.|++....-
T Consensus 621 ipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 5899999999999999999999999964 356779999999999999999999999999999976543
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.0034 Score=57.18 Aligned_cols=53 Identities=36% Similarity=0.521 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEE
Q 024601 32 YEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIV 84 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~v 84 (265)
+.||.+.|..||++....+-.|.+++.|+++++|.+||..|+|..+.|+.|.+
T Consensus 113 ~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 113 WQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred HHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 36899999999999777777788888899999999999999999999999999
No 72
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.11 E-value=0.0062 Score=61.69 Aligned_cols=62 Identities=29% Similarity=0.380 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 26 EHFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 26 e~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
-||.-..++|..-|+-||.|+.|.+..+ ++++.|.+.++|.+|+..|||-.++||.|.|-..
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 4777777889999999999999988765 3667799999999999999999999999997664
No 73
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=96.01 E-value=0.0061 Score=62.18 Aligned_cols=56 Identities=29% Similarity=0.301 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|+.+|+|...+|..| ++|+.|+-++|++.|+..+++..|.|+.|.|+++.
T Consensus 20 ~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 20 EQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred hHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 457778899999999999865 46788999999999999999999999999999974
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=95.91 E-value=0.0084 Score=59.98 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecCCCC---ceecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDNLAD---HMFREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~---hlF~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
.|+-..+-|++.|..||.|.-..|..|-.. +.|.++++|+.|+..|||-.++||-|.|.|
T Consensus 545 P~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 545 PFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred CccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 567777889999999999998888665432 349999999999999999999999999986
No 75
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.0034 Score=63.55 Aligned_cols=54 Identities=31% Similarity=0.424 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCCce---ecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 32 YEDLFEELNKYGEIESLNICDNLADHM---FREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~g~hl---F~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
+++|...|++||+|..|..-.+...|. |-+..+|+.|+++||++.++|+.|.+.
T Consensus 89 n~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 89 NDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred HHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 357888899999999976665554444 899999999999999999999999943
No 76
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.90 E-value=0.0095 Score=42.57 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHH
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARAL 69 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAi 69 (265)
++|...|..||+|+++.+.. |...+.|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 56888999999999999983 33444599999999985
No 77
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=95.57 E-value=0.02 Score=52.05 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhc-CCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 27 HFEDFYEDLFEELNKY-GEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKy-GeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
.|-.|...++..|..| |.|..+.+.+|. +|+.|++++.|.-|.+.||+-.|.|+.|.|.|-|-.
T Consensus 58 p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 58 PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 3444556677778887 788888887763 677799999999999999999999999999998765
No 78
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=95.53 E-value=0.017 Score=57.62 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCce-eCC--eeEEEEec
Q 024601 32 YEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRF-YAG--RPIIVDFS 87 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~-F~G--R~I~vEfS 87 (265)
++||++.|++||.|.+|.|+++. +|++|.+.++|.+||.+|+... |-| -+|.|-++
T Consensus 48 E~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 48 EKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred HHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 47899999999999999999874 5677999999999999998754 444 35555554
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=95.49 E-value=0.031 Score=51.72 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+..+-+||.+.|+.||++..+.|.-+. +++.|..-++|..||+.|||--.+|++|..++.-
T Consensus 93 ~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 93 YGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 344557899999999999988887654 4566999999999999999999999999998864
No 80
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.24 E-value=0.067 Score=46.25 Aligned_cols=66 Identities=24% Similarity=0.494 Sum_probs=46.7
Q ss_pred HHH-HHHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcch
Q 024601 27 HFE-DFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 94 (265)
Q Consensus 27 ~Fd-eFyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFre 94 (265)
.|+ .+..+|.+.|+.||+|+=|.+....--++|.+-+.|.+|+ .|+|..++|+.|.+.+-. .+|-.
T Consensus 44 ~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKt-pdW~~ 110 (146)
T PF08952_consen 44 SFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT-PDWLK 110 (146)
T ss_dssp S--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE--------
T ss_pred cCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCC-ccHHH
Confidence 444 5667899999999999987776654445599999998776 599999999999999853 56643
No 81
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.04 E-value=0.051 Score=57.44 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC--CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 32 YEDLFEELNKYGEIESLNICDNL--ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~--g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
..||...|+.||+|+.|.+.-+. +++....-.+|.+|+.+|+.-.++++.|.+-|+
T Consensus 435 e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 435 EQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred HHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 36899999999999999998776 566666789999999999999999999988775
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=94.99 E-value=0.012 Score=57.91 Aligned_cols=59 Identities=27% Similarity=0.364 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
|+.-.+.|+..|.-||+|.+|.+..+. +|+.|+-++.|+-|++.|||..++||-|.|-.
T Consensus 123 fEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 123 FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred EEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 444446688999999999999998654 45669999999999999999999999999874
No 83
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.66 E-value=0.089 Score=42.56 Aligned_cols=50 Identities=20% Similarity=0.383 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCeeEEE-------------EecCCCC-ce-ecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 33 EDLFEELNKYGEIESLN-------------ICDNLAD-HM-FREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~-------------V~~N~g~-hl-F~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
..|..+|++||+|.+.. ++...+- |+ |.+..+|++|+. .||..|+|-.|.
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 46899999999998875 3333222 23 999999999997 699999997664
No 84
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.39 E-value=0.038 Score=44.59 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC--CCceecCHHHHHHHHHHhCCc-----eeCCeeEEEEe
Q 024601 32 YEDLFEELNKYGEIESLNICDNL--ADHMFREEEQAARALKSLSGR-----FYAGRPIIVDF 86 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~--g~hlF~~eedA~kAik~LNGR-----~F~GR~I~vEf 86 (265)
.+||.+.|++||+|.-|.+.... +.+.|.+++.|+.|+..|.-. .+.+..|.+++
T Consensus 15 re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 15 REDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred HHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46899999999999988887654 456699999999999988765 55555555544
No 85
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.38 E-value=0.12 Score=50.46 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecCC--CCceecCHHHHHHHHHH-hCCceeCCeeEEEEecCC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDNL--ADHMFREEEQAARALKS-LSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N~--g~hlF~~eedA~kAik~-LNGR~F~GR~I~vEfSpV 89 (265)
.-+..||..+|.+||+|..|.|.-.. +|+.|.+-..|+.|... +|--.++|+.|.+-+.+-
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45568999999999999999987554 68889999999887755 566667999999998765
No 86
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=94.32 E-value=0.051 Score=48.96 Aligned_cols=59 Identities=24% Similarity=0.448 Sum_probs=44.9
Q ss_pred HHHHHHhcCCeeEE-EEec-----C---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 35 LFEELNKYGEIESL-NICD-----N---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 35 V~eEfsKyGeI~dV-~V~~-----N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
|++.|++||.|..- .|.. + ++++.|++.+.|.+||..|||.+.+.++|+|+++...+-+
T Consensus 113 L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 113 LYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 56667999988662 2221 1 2345599999999999999999999999999998654433
No 87
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.14 E-value=0.11 Score=45.50 Aligned_cols=53 Identities=21% Similarity=0.484 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-CCceecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 33 EDLFEELNKYGEIESLNICDNL-ADHMFREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-g~hlF~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
..|...|+.||+|..|.+|--. +-++|.+..+|.+|+.++..+ -.|..+.|.+
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~-~pgtm~qCsW 158 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSR-APGTMFQCSW 158 (166)
T ss_pred HHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCC-CCCceEEeec
Confidence 4689999999999999999654 556699999999999999874 4566666654
No 88
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.82 E-value=0.14 Score=45.38 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCce--ecCHHHHHHHHHHhC--CceeCCeeEEEEecCCCCc
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHM--FREEEQAARALKSLS--GRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hl--F~~eedA~kAik~LN--GR~F~GR~I~vEfSpVtdF 92 (265)
..|...|.+|+.+..+.+...+.-++ |.+.++|..|...|+ +..|.|..|.+.|+..+..
T Consensus 10 ~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 10 AELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 45777789999999999999998766 999999999999999 9999999999999865555
No 89
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=93.30 E-value=0.051 Score=51.79 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+|...|--||.|++.+|.-+ ++|+-|.+..+|+.||.+|||-.++=+.|.|.|-.
T Consensus 300 aEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 300 AELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred HHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 367888999999998888654 35666999999999999999999999999998853
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=93.27 E-value=0.1 Score=49.77 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCce-eC--CeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRF-YA--GRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~-F~--GR~I~vEfSp 88 (265)
+|||+..|.-||+|+++.|.+.. +|+.|.+--+|+.||.+|+|.. .. .--|.|.|+.
T Consensus 33 e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 33 EDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred HHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 47999999999999999998754 4566999999999999999854 22 3456666664
No 91
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=92.91 E-value=0.19 Score=50.66 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHH-hcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 26 EHFEDFYEDLFEELN-KYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 26 e~FdeFyEDV~eEfs-KyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
..||--.+||.+.+. |-|+|+-|.+.-+. +-+.|+++|.+++|++.||--..+||+|.|---|
T Consensus 52 Ipyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 52 IPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred CcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 356666678888884 89999988887553 2244999999999999999999999999996554
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=92.89 E-value=0.11 Score=41.57 Aligned_cols=55 Identities=31% Similarity=0.351 Sum_probs=36.4
Q ss_pred HHHHHHHhcC-CeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 34 DLFEELNKYG-EIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 34 DV~eEfsKyG-eI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
-|...+...| +|..|. .+.+.+.|.+.+.|..|.+-|+|...-|+.|.|.|+|..
T Consensus 22 RL~qLsdNCGGkVl~v~--~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 22 RLRQLSDNCGGKVLSVS--GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp HHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred HHHHHhhccCCEEEEEe--CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4555566665 787763 444555599999999999999999999999999999753
No 93
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.25 E-value=0.094 Score=50.55 Aligned_cols=75 Identities=24% Similarity=0.523 Sum_probs=56.9
Q ss_pred HHHHhcCCeeEEEEecCCC-----------CceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcchhhhccccc-cC
Q 024601 37 EELNKYGEIESLNICDNLA-----------DHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEE-NT 104 (265)
Q Consensus 37 eEfsKyGeI~dV~V~~N~g-----------~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFreA~Cr~~e~-g~ 104 (265)
+-|.+||.|..|.+-.... .++|..+++|..||...+|-.++|+.|.|.|.. +.| |.-+.. ..
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt-tky----cs~~l~~~~ 173 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGT-TKY----CSFYLRNDI 173 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC-Ccc----hhHHhhhhc
Confidence 4567899999999877441 234999999999999999999999999888752 333 444443 46
Q ss_pred CCCCCccccCccc
Q 024601 105 CNRGGYCNFMHLK 117 (265)
Q Consensus 105 C~RGg~CNFmH~~ 117 (265)
|.+.. |=|+|-.
T Consensus 174 c~~~~-cmylhe~ 185 (327)
T KOG2068|consen 174 CQNPD-CMYLHEI 185 (327)
T ss_pred ccCcc-ccccccc
Confidence 77766 9999954
No 94
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=91.10 E-value=0.35 Score=51.12 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeeEEEEec-----------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICD-----------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~-----------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+.|...|..||+|..|.|.- |-++++|-+-.+|+.|++.|+|..+-+..+..-|+.+
T Consensus 189 ~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 189 NFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred HHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 46777899999999999974 3367789999999999999999999999999998844
No 95
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=91.09 E-value=0.37 Score=49.79 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC-CCC------ceecCHHHHHHHHHHhCCceeCCee
Q 024601 31 FYEDLFEELNKYGEIESLNICDN-LAD------HMFREEEQAARALKSLSGRFYAGRP 81 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N-~g~------hlF~~eedA~kAik~LNGR~F~GR~ 81 (265)
|..=|...|+|+|+|+.+.++-. .+. ..|++..+|+.||+.|||.-++-.-
T Consensus 77 lk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 77 LKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred HHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34456677899999999999933 222 2299999999999999999988543
No 96
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.40 E-value=0.41 Score=46.19 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCC-ce-ecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 024601 33 EDLFEELNKYGEIESLNICDNLAD-HM-FREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~-hl-F~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF 92 (265)
-=|..+|+++|+|++.+...|.+. |+ |.+.-+|.+||. -||+.|+|-.+ +-+.|.+|-
T Consensus 211 s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm-iGVkpCtDk 270 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM-IGVKPCTDK 270 (350)
T ss_pred hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceE-EeeeecCCH
Confidence 348889999999999988855443 33 999999999997 58999998766 456665554
No 97
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=89.41 E-value=0.96 Score=44.32 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCee--------EEEEecCCCCc-----e--ecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIE--------SLNICDNLADH-----M--FREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~--------dV~V~~N~g~h-----l--F~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+++.++|+|+|-|. .|+|..+...+ | |...++...||+.|++--|.|+.|.|+-+..
T Consensus 149 dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 149 DEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKF 220 (382)
T ss_pred HHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhh
Confidence 34566789999774 24555544333 2 8899999999999999999999999998764
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=88.73 E-value=0.41 Score=44.76 Aligned_cols=40 Identities=20% Similarity=0.436 Sum_probs=35.2
Q ss_pred EecCCCCceecCHHHHHHHHHHhCCceeC---CeeEEEEecCC
Q 024601 50 ICDNLADHMFREEEQAARALKSLSGRFYA---GRPIIVDFSPV 89 (265)
Q Consensus 50 V~~N~g~hlF~~eedA~kAik~LNGR~F~---GR~I~vEfSpV 89 (265)
||...+|++|.+..+|.+|+++|||-.|+ +..|+.||+..
T Consensus 75 ~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKS 117 (284)
T KOG1457|consen 75 VCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKS 117 (284)
T ss_pred cccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhc
Confidence 45566788899999999999999999998 88999999863
No 99
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=87.30 E-value=0.64 Score=43.32 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=50.4
Q ss_pred HHHHHHHHH-HHHHHHhcCCeeEEEEecCC------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 26 EHFEDFYED-LFEELNKYGEIESLNICDNL------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 26 e~FdeFyED-V~eEfsKyGeI~dV~V~~N~------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
.-+..+-|+ |++.|-.-|+|..|.|++.. +++.|.+|-...-|++.|||-..-+++|.+.|--.+
T Consensus 16 n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 16 NMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 334444444 44555699999999999742 455699999999999999999999999999885444
No 100
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=87.16 E-value=0.36 Score=47.97 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEec--------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICD--------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~--------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
++.....|.++|.+||+|+..-|.. .++++.|.+..+++.||.+- =-..+|+.|.||--
T Consensus 298 ~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 298 PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 4445566899999999998876653 34567799999999999987 77888999998753
No 101
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=85.61 E-value=0.41 Score=43.87 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+|....+.|..+|+-+|.|..|.|+.+. ++++|.+.+.++.|++ |||..+-|++|.|.+.
T Consensus 110 d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 110 DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 5666666799999999999876665432 2345999999999999 9999999999999875
No 102
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.10 E-value=0.6 Score=49.00 Aligned_cols=12 Identities=42% Similarity=0.349 Sum_probs=5.5
Q ss_pred CCCcHHHHHHHH
Q 024601 202 REGSEERRAKIE 213 (265)
Q Consensus 202 r~~s~erra~i~ 213 (265)
|.-+.-|+.+-+
T Consensus 812 ~~k~~~~~~~~~ 823 (878)
T KOG1847|consen 812 RHKSSKRIKKDE 823 (878)
T ss_pred cccccccCcCcc
Confidence 444455544433
No 103
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=83.17 E-value=0.66 Score=46.21 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecCC----CCceecCHHHHHHHHHHhCCceeC
Q 024601 30 DFYEDLFEELNKYGEIESLNICDNL----ADHMFREEEQAARALKSLSGRFYA 78 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~N~----g~hlF~~eedA~kAik~LNGR~F~ 78 (265)
.+..++-+-|..+|+|.--.+.... +-|.|........|+.. +|+.|.
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 4456788888999998765554322 33558877777777664 455555
No 104
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=83.13 E-value=3.1 Score=43.49 Aligned_cols=11 Identities=82% Similarity=1.090 Sum_probs=5.4
Q ss_pred cCCCCCCCCCC
Q 024601 137 RSRSRSRSPYR 147 (265)
Q Consensus 137 ~~~~rs~~~~~ 147 (265)
+++||||||.+
T Consensus 606 rskSRSRSpS~ 616 (757)
T KOG4368|consen 606 RSKSRSRSPSR 616 (757)
T ss_pred cccccCCCccc
Confidence 44555555543
No 105
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.68 E-value=1.1 Score=33.51 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=26.9
Q ss_pred CeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 44 EIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 44 eI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
.|-+|.|.+++.++.- ..+.|..++..|++..+.|++|.++.+
T Consensus 32 ~IG~I~I~~~~S~vev-~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 32 DIGRIDIFDNFSFVEV-PEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GEEEEEE-SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred hEEEEEEeeeEEEEEE-CHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788999888876643 456799999999999999999999864
No 106
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.60 E-value=2.5 Score=31.67 Aligned_cols=46 Identities=33% Similarity=0.508 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeeEE-EEecCCCCceecCHHHHHHHHHHh
Q 024601 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESL-NICDNLADHMFREEEQAARALKSL 72 (265)
Q Consensus 19 ~d~eelqe~FdeFyEDV~eEfsKyGeI~dV-~V~~N~g~hlF~~eedA~kAik~L 72 (265)
|+.++|...|.++ |..=+ ...| +|-+..+.++|.+++.|.+|+.+|
T Consensus 16 lsT~dI~~y~~~y-------~~~~~-~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 16 LSTDDIKAYFSEY-------FDEEG-PFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCHHHHHHHHHHh-------cccCC-CceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 7888777766655 11113 3344 555666778899999999999876
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=80.67 E-value=5 Score=40.09 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCeeEEEEecCC---CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 34 DLFEELNKYGEIESLNICDNL---ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~N~---g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
-||..|..||.|+.|+..+-. +-+...++...+.||..||+-..-|..|.+.+|+.
T Consensus 304 rlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 304 RLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred hhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 588899999999999887654 33448999999999999999999999999998864
No 108
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.32 E-value=4.2 Score=30.69 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCC-ceecCHHHHHHHHHHhCCceeCCeeEEE
Q 024601 32 YEDLFEELNKYGEIESLNICDNLAD-HMFREEEQAARALKSLSGRFYAGRPIIV 84 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~g~-hlF~~eedA~kAik~LNGR~F~GR~I~v 84 (265)
.+||.-.|.+|+- .+|. ++..|+ ++|.+..+|++|..+.+|+.|-+-.|..
T Consensus 14 v~d~K~~Lr~y~~-~~I~-~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRLRKYRW-DRIR-DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHHhcCCc-ceEE-ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678888999963 4444 455555 5599999999999999999988777654
No 109
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=80.20 E-value=0.79 Score=43.95 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
.|++..|.|.+.|.+||+|.+++|.++ ++++.|++++....++.. ---.++|+.|.+.-+
T Consensus 15 sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 15 SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 466677788888899999999999984 467779877765544443 334577777776554
No 110
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.91 E-value=3.1 Score=44.97 Aligned_cols=90 Identities=29% Similarity=0.359 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCC--ceecCHHHHHHHHHHhCCcee--CCeeEEEEecCCCCcchhhhccccccCCCC
Q 024601 32 YEDLFEELNKYGEIESLNICDNLAD--HMFREEEQAARALKSLSGRFY--AGRPIIVDFSPVTDFREATCRQYEENTCNR 107 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~g~--hlF~~eedA~kAik~LNGR~F--~GR~I~vEfSpVtdFreA~Cr~~e~g~C~R 107 (265)
---|-..|++||.|.+.+..+++.- +.|.+.+.|..|.++|.|+.. .|-|..|.|+.+.-|-+ .. -.-
T Consensus 312 SssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e-------p~-ln~ 383 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE-------PP-LNL 383 (1007)
T ss_pred HHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc-------CC-cCc
Confidence 3457788999999999999877654 449999999999999999975 48899999987766633 22 222
Q ss_pred CCccccCccccCCHHHHHHhhh
Q 024601 108 GGYCNFMHLKRISRDLRRQLFG 129 (265)
Q Consensus 108 Gg~CNFmH~~~~sr~L~r~L~~ 129 (265)
-|+-||-|-..--..|-.-||.
T Consensus 384 ~g~nn~~~~~~l~e~ln~g~~n 405 (1007)
T KOG4574|consen 384 TGYNNFNHQPLLQEQLNTGLFN 405 (1007)
T ss_pred ccccCCCCCcchhhhhccccce
Confidence 3567788877666666555554
No 111
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=76.64 E-value=3.6 Score=41.47 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecCC---C------------------CceecCHHHHHHHHHHhC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDNL---A------------------DHMFREEEQAARALKSLS 73 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N~---g------------------~hlF~~eedA~kAik~LN 73 (265)
|..||-|...|+.+|.|..|.||... . .+.|...+.|.+|...||
T Consensus 242 Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 242 DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 45678999999999999999999861 1 122999999999999886
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=75.52 E-value=3.5 Score=43.94 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhcCCee-EEEEecCC-----CCce--ecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 27 HFEDFYEDLFEELNKYGEIE-SLNICDNL-----ADHM--FREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~-dV~V~~N~-----g~hl--F~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
-|+...+||.+.|.-|-.+- +|.|..|. ++.+ |++.++|..|+..|+++.+..|.|.+.+
T Consensus 876 Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 876 PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 56777899999999997764 44444443 2333 9999999999999999999999999875
No 113
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=72.56 E-value=1.4 Score=42.61 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=24.0
Q ss_pred CcchhhhccccccCCCCCCccccCccc
Q 024601 91 DFREATCRQYEENTCNRGGYCNFMHLK 117 (265)
Q Consensus 91 dFreA~Cr~~e~g~C~RGg~CNFmH~~ 117 (265)
.+..-+|+-|.+|.|..|..|+|||..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh
Confidence 667788999999999999999999964
No 114
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=72.02 E-value=1.9 Score=41.37 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
.++..++++.+.|.+||.|.++.|.-+ ++++.|.+++... .+-.+.-..|+|++|.|-.+
T Consensus 106 ~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd-kv~~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 106 PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD-KVTLQKFHDFNGKKVEVKRA 173 (311)
T ss_pred CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc-eecccceeeecCceeeEeec
Confidence 346677899999999999999988754 3566687666544 55567888999999998776
No 115
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=71.23 E-value=1.6 Score=42.30 Aligned_cols=28 Identities=39% Similarity=0.883 Sum_probs=23.7
Q ss_pred CCc-chhhhccccccCCCCCCc-cccCccc
Q 024601 90 TDF-REATCRQYEENTCNRGGY-CNFMHLK 117 (265)
Q Consensus 90 tdF-reA~Cr~~e~g~C~RGg~-CNFmH~~ 117 (265)
+.| ...+||.|..+.|.||.. |.|-|.-
T Consensus 32 ~~wl~~eVCReF~rn~C~R~d~~CkfaHP~ 61 (331)
T KOG2494|consen 32 TKWLTLEVCREFLRNTCSRGDRECKFAHPP 61 (331)
T ss_pred cchhHHHHHHHHHhccccCCCccccccCCC
Confidence 445 458999999999999997 9999973
No 116
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=70.51 E-value=5.8 Score=39.95 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCeeEEEEec-CCCCc---eecCHHHHHHHHHHhCCce-eCCe-eEEEEecCCCC
Q 024601 34 DLFEELNKYGEIESLNICD-NLADH---MFREEEQAARALKSLSGRF-YAGR-PIIVDFSPVTD 91 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~-N~g~h---lF~~eedA~kAik~LNGR~-F~GR-~I~vEfSpVtd 91 (265)
=|...|++||.|..|.... |.+|. .|.+...|+.|-.+|+|+- |+|- .|..+||..++
T Consensus 166 VLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 166 VLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred HHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhccc
Confidence 3567789999999997764 54553 3999999999999999985 4442 56667776554
No 117
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=69.18 E-value=3.3 Score=42.13 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 31 FYEDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
..++|...|++||+|++|-|-.+ .+-++|.+-.+|-.|. ...+-.|++|.|.+-+-.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 45789999999999999999877 2445699988886664 468899999999998853
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=68.52 E-value=3.8 Score=38.95 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=29.2
Q ss_pred CCCceecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 54 LADHMFREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 54 ~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
++++-|.+..++..|++.|||++.+-|+|.+--
T Consensus 234 ygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 234 YGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 466679999999999999999999999998743
No 119
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=66.11 E-value=4.4 Score=39.68 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCee--------EEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIE--------SLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~--------dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+|++.|.+.|.|. .|+|..+. +.+.|.+...|+.||..++++-|.|.+|.|-++.
T Consensus 81 ~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~ 152 (351)
T KOG1995|consen 81 NDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAE 152 (351)
T ss_pred HHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhh
Confidence 56777777777663 34444443 2344999999999999999999999999887763
No 120
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=64.47 E-value=2.9 Score=38.52 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCeeEEEEe---cCC--CCce-ecCHHHHHHHHHHhCC------ceeCCe----------eEEEEecCCCC
Q 024601 34 DLFEELNKYGEIESLNIC---DNL--ADHM-FREEEQAARALKSLSG------RFYAGR----------PIIVDFSPVTD 91 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~---~N~--g~hl-F~~eedA~kAik~LNG------R~F~GR----------~I~vEfSpVtd 91 (265)
+-.-.|++-|+-++-... +.. .+.| |...+=|.+|-..+-. +...|+ |-.+..-.+-|
T Consensus 59 E~e~~L~~~GE~ld~~Tlt~~dd~TkE~lL~~~~~~LA~ka~~~~~~~~Ne~~~~m~~k~~~~~K~~~~Pt~~r~~~viD 138 (259)
T COG5152 59 ENEGKLQKKGEDLDKYTLTVNDDSTKEDLLNFERKELAEKAKKRRPSDDNELVLNMSGKNKRLTKQINQPTMFRDGEVID 138 (259)
T ss_pred hhhhhhhhccccccceEEEecCcchHHHHhCCCCHHHHHHHhhcCCccchHHHHhccccchhhhhhccCCceeeccceee
Confidence 344456778865443222 211 1223 8888888888664321 111111 22333344668
Q ss_pred cchhhhccc-cccCCCCCCccccCccc
Q 024601 92 FREATCRQY-EENTCNRGGYCNFMHLK 117 (265)
Q Consensus 92 FreA~Cr~~-e~g~C~RGg~CNFmH~~ 117 (265)
|...+|..| ++|-|.-|..|.|+|..
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhh
Confidence 888999999 67999999999999985
No 121
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=63.07 E-value=7.8 Score=38.81 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=41.3
Q ss_pred HHHHHHhcCCeeEEEEecCCCC---ceecCHHHHHHHHHHhCCce-eCC-eeEEEEecCCC
Q 024601 35 LFEELNKYGEIESLNICDNLAD---HMFREEEQAARALKSLSGRF-YAG-RPIIVDFSPVT 90 (265)
Q Consensus 35 V~eEfsKyGeI~dV~V~~N~g~---hlF~~eedA~kAik~LNGR~-F~G-R~I~vEfSpVt 90 (265)
|+..|.--|+|..|+|.+..+- +.|++.+.|++|-.+|||.- |+| =.|.+||+.-+
T Consensus 139 ly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 139 LYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred hhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 5677889999999999876432 34999999999999999963 233 34555555443
No 122
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=61.49 E-value=4.3 Score=39.25 Aligned_cols=42 Identities=24% Similarity=0.565 Sum_probs=32.9
Q ss_pred CCCcchhhhccccccCCCCCCccccCccccCCHHH-HHHhhhc
Q 024601 89 VTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL-RRQLFGR 130 (265)
Q Consensus 89 VtdFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L-~r~L~~~ 130 (265)
..+-+.-+|-.|-.|.|..|..|+|.|-.-+-+.. ++.||.-
T Consensus 87 gvDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d 129 (343)
T KOG1763|consen 87 GVDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPD 129 (343)
T ss_pred CCCchHHHHHHHhccCCCCCCcccccchHHHhhhccchhcccc
Confidence 46778889999999999999999999987555443 4455554
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=60.01 E-value=5.1 Score=37.76 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF 92 (265)
+|..-.+||+.+|..+|.|..+.++... +++.|.....+..|+.. ..+...|++|.++..+-...
T Consensus 194 ~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 194 DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 5555566777899999999999988654 34459999999999998 99999999999998764433
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=59.96 E-value=7 Score=39.96 Aligned_cols=56 Identities=14% Similarity=0.311 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCeeEEEEecCCC--------CceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNLA--------DHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g--------~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
..|.+.+..||++..+.++.+.. +..|-+...+..|+..|||.-.++.+|+|..+-
T Consensus 304 ~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 304 DQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred HHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45777788999999998887653 344889999999999999999999999999863
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=59.43 E-value=8.4 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
.||.+.|+-||.|.=.+|-+..+++.....+.|..|+..|+
T Consensus 23 ~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999886
No 126
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=57.17 E-value=3.8 Score=38.67 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=37.1
Q ss_pred eeEEEEecCCCCcchhhhccccccCCCCCCccccCccccCCHHHHH-Hhhhcc
Q 024601 80 RPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR-QLFGRY 131 (265)
Q Consensus 80 R~I~vEfSpVtdFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~r-~L~~~~ 131 (265)
+.|.|-. +-+..+|-+|..+.|..|..|+|.|-+..-+.+.+ .||...
T Consensus 75 q~iragv----dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDv 123 (299)
T COG5252 75 QVIRAGV----DPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDV 123 (299)
T ss_pred hhhcccc----CchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhh
Confidence 4555543 44668899999999999999999999887776644 577754
No 127
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=56.93 E-value=3.6 Score=41.82 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEec--------CCCCceecCHHHHHHHHHHhCCcee--CCeeE---------EEEec
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICD--------NLADHMFREEEQAARALKSLSGRFY--AGRPI---------IVDFS 87 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~--------N~g~hlF~~eedA~kAik~LNGR~F--~GR~I---------~vEfS 87 (265)
-||.|.-|||..+.+|+ =+.|.+ |....--.+++.|..|+..|+.+|+ +|-.| .||+|
T Consensus 390 K~E~FiFDvf~~a~~~~---~~eV~R~~EFaPlKN~~g~~~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEis 466 (493)
T PLN02435 390 KLEQFIFDAFPYAPSTA---LFEVLREEEFAPVKNANGSNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVS 466 (493)
T ss_pred EeeeeeecchhhcCceE---EEEEchhhccCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeC
Confidence 37888889988877664 223332 2222226899999999999999999 67666 58999
Q ss_pred CCCCcc
Q 024601 88 PVTDFR 93 (265)
Q Consensus 88 pVtdFr 93 (265)
|...|.
T Consensus 467 P~~sY~ 472 (493)
T PLN02435 467 PLCSYA 472 (493)
T ss_pred CceeeC
Confidence 987764
No 128
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.70 E-value=4.3 Score=39.13 Aligned_cols=28 Identities=32% Similarity=0.903 Sum_probs=25.0
Q ss_pred CCcchhhhccc-cccCCCCCCccccCccc
Q 024601 90 TDFREATCRQY-EENTCNRGGYCNFMHLK 117 (265)
Q Consensus 90 tdFreA~Cr~~-e~g~C~RGg~CNFmH~~ 117 (265)
-+|..-+|..| ++|-|..|..|.|+|.+
T Consensus 182 ~d~qpDicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 182 IDYQPDICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred eecCchhhhhhHhhCcccccchhhhhhhh
Confidence 47888999999 67999999999999975
No 129
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=52.27 E-value=12 Score=37.97 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCcee--CCeeE---------EEEec
Q 024601 27 HFEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFY--AGRPI---------IVDFS 87 (265)
Q Consensus 27 ~FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F--~GR~I---------~vEfS 87 (265)
-||.|.=|||..+.+|+-+ .|.+. ....-..+++.|..++..|+.+|+ +|-.+ .||+|
T Consensus 381 K~E~FiFDvf~~~~~~~~~---ev~R~~eFsPlKNa~g~~~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eis 457 (482)
T PTZ00339 381 KLEAFIFDIFRYAKNVLIL---EVDREDEFAPIKNADGAAADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEIS 457 (482)
T ss_pred eehhhhhhHHHhcccccee---eechhhccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEec
Confidence 5788999999888776643 33332 222226789999999999999998 66644 46889
Q ss_pred CCCCcc
Q 024601 88 PVTDFR 93 (265)
Q Consensus 88 pVtdFr 93 (265)
|...|.
T Consensus 458 p~~sy~ 463 (482)
T PTZ00339 458 PLVSYG 463 (482)
T ss_pred CcceeC
Confidence 877664
No 130
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=50.83 E-value=10 Score=21.85 Aligned_cols=13 Identities=38% Similarity=0.974 Sum_probs=11.4
Q ss_pred CCCCCCccccCcc
Q 024601 104 TCNRGGYCNFMHL 116 (265)
Q Consensus 104 ~C~RGg~CNFmH~ 116 (265)
.|..+..|-|.|.
T Consensus 7 ~C~~~~~C~f~HP 19 (19)
T PF14608_consen 7 NCTNGDNCPFSHP 19 (19)
T ss_pred CCCCCCcCccCCc
Confidence 3999999999993
No 131
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=49.59 E-value=9.1 Score=35.67 Aligned_cols=37 Identities=19% Similarity=0.594 Sum_probs=30.1
Q ss_pred EecCCCCcchhhhccccc-cCCCCCCccccCccccCCH
Q 024601 85 DFSPVTDFREATCRQYEE-NTCNRGGYCNFMHLKRISR 121 (265)
Q Consensus 85 EfSpVtdFreA~Cr~~e~-g~C~RGg~CNFmH~~~~sr 121 (265)
....--.|++-.|.-|.. |.|+.|..|-|.|......
T Consensus 168 ~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 168 QVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred hhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 334456889999999976 9999999999999976444
No 132
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=48.81 E-value=15 Score=38.68 Aligned_cols=6 Identities=17% Similarity=0.330 Sum_probs=2.2
Q ss_pred HHHHhH
Q 024601 212 IEQWNR 217 (265)
Q Consensus 212 i~~wn~ 217 (265)
|+-=|+
T Consensus 684 lse~NK 689 (757)
T KOG4368|consen 684 LGEENK 689 (757)
T ss_pred cccccc
Confidence 333333
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=48.57 E-value=32 Score=28.24 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=29.6
Q ss_pred CeeEEEEecCCCC----ce--ecCHHHHHHHHHHhCCceeCC
Q 024601 44 EIESLNICDNLAD----HM--FREEEQAARALKSLSGRFYAG 79 (265)
Q Consensus 44 eI~dV~V~~N~g~----hl--F~~eedA~kAik~LNGR~F~G 79 (265)
.|..+.|.++... +| |.+..+|..-...+||+-|+-
T Consensus 40 ~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 40 DIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred cEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4778888876543 23 999999999999999999974
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=47.12 E-value=15 Score=38.38 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=33.9
Q ss_pred CeeEEEEecCCC-CceecCHHHHHHHHHHhCC--ceeCCeeEEEEecCCC
Q 024601 44 EIESLNICDNLA-DHMFREEEQAARALKSLSG--RFYAGRPIIVDFSPVT 90 (265)
Q Consensus 44 eI~dV~V~~N~g-~hlF~~eedA~kAik~LNG--R~F~GR~I~vEfSpVt 90 (265)
+++++...-|.+ +++|+++.||+.|.+.|.- ..|-|++|.|.+-++.
T Consensus 203 k~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImARIKain 252 (684)
T KOG2591|consen 203 KVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAIN 252 (684)
T ss_pred CceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhh
Confidence 444444443433 2449999999999999975 4799999999876544
No 135
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=46.16 E-value=9.5 Score=40.06 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHH-hcCCeeEEEEe--cCCCCceecCHHHHHHHHHHhCCcee---CCeeEEEEecCCCCcchhhhc
Q 024601 34 DLFEELN-KYGEIESLNIC--DNLADHMFREEEQAARALKSLSGRFY---AGRPIIVDFSPVTDFREATCR 98 (265)
Q Consensus 34 DV~eEfs-KyGeI~dV~V~--~N~g~hlF~~eedA~kAik~LNGR~F---~GR~I~vEfSpVtdFreA~Cr 98 (265)
.|.++|. .-|.|+++||- +-.+||.|.++++|...+.+|+|-.+ +++-|.|+|...++..-++-.
T Consensus 460 QLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld~hr~~ 530 (718)
T KOG2416|consen 460 QLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELDKHRNG 530 (718)
T ss_pred HHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHHHHhcc
Confidence 3566777 55677888774 34678889999999999999999654 688899999887776544433
No 136
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=46.01 E-value=23 Score=36.36 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHH
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKS 71 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~ 71 (265)
|....+||.+.|+-. .|++|++.+. .++|.|.+++++++|++.
T Consensus 20 wsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 20 WSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh
Confidence 445556677777665 6888887764 245779999999999974
No 137
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=45.15 E-value=66 Score=29.00 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCCce---ecCHHHHHHHHHHhC-------CceeCCeeEEE
Q 024601 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM---FREEEQAARALKSLS-------GRFYAGRPIIV 84 (265)
Q Consensus 20 d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~hl---F~~eedA~kAik~LN-------GR~F~GR~I~v 84 (265)
.+.+|..+|..|.+-|...+.+.|= .+..-..||+ -.+.+.|+.+..+|. .-.++||||.+
T Consensus 4 ~~~~l~~dl~~F~~ki~~l~~~l~l----~l~~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l 74 (185)
T PF06185_consen 4 ELQDLIGDLPRFEQKIQQLAQKLGL----DLSQYEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICL 74 (185)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHT-------TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCC----CccccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEE
Confidence 4578889999999999988888772 2222234666 567777887777764 35789999975
No 138
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.57 E-value=33 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEec
Q 024601 29 EDFYEDLFEELNKYGEIESLNICD 52 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~ 52 (265)
+.+..+|++.|+.+|+|.-|.|-.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcc
Confidence 356679999999999999988853
No 139
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=44.48 E-value=11 Score=37.15 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 024601 21 PRKIQEHFEDFYED 34 (265)
Q Consensus 21 ~eelqe~FdeFyED 34 (265)
|.+|..+|+.+..|
T Consensus 171 p~dLw~WyEpyldD 184 (453)
T KOG2888|consen 171 PADLWDWYEPYLDD 184 (453)
T ss_pred hhHHHHHhhhhccc
Confidence 45555555555544
No 140
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=43.79 E-value=21 Score=33.99 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHHHHHhcCCeeEEEEecCCC----------C----------ceecCHHHHHHHHHHhCCceeCCeeE
Q 024601 35 LFEELNKYGEIESLNICDNLA----------D----------HMFREEEQAARALKSLSGRFYAGRPI 82 (265)
Q Consensus 35 V~eEfsKyGeI~dV~V~~N~g----------~----------hlF~~eedA~kAik~LNGR~F~GR~I 82 (265)
|++.|+.||+|-.|+|-.+.- . +.|.+-..|..+...|||.-++|+.-
T Consensus 91 lReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk~ 158 (278)
T KOG3152|consen 91 LREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKKK 158 (278)
T ss_pred HHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 677889999999999975421 1 22999999999999999999999864
No 141
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=35.98 E-value=21 Score=37.59 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHHHhHHHHhhhhhccCCCCCCCCCCCCCccccccCCCCccccCC
Q 024601 201 VREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLMQNGNGYHSYKQ 256 (265)
Q Consensus 201 ~r~~s~erra~i~~wn~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (265)
.|+.++||-++-..| +|+..+...-+-++.+-+++|++.|-++-+.+.+..+|.+
T Consensus 563 srkr~ee~e~r~r~w-~e~~g~~~~s~trn~gp~~~~~ssn~sd~~t~r~~fky~r 617 (673)
T KOG2296|consen 563 SRKRGEEREARTRKW-AEQQGKHSPSETRNSGPSNGQGSSNPSDASTGRNMFKYIR 617 (673)
T ss_pred HHhhhhhHHHHHHHH-HHHhcCCCcccccCCCCCCCCCCCCccccccccchHHHHH
Confidence 367788888888899 7777777666677888889999999988777888887765
No 142
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=35.26 E-value=65 Score=31.86 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=11.4
Q ss_pred ecCHHHHHHHHHHhCCceeC
Q 024601 59 FREEEQAARALKSLSGRFYA 78 (265)
Q Consensus 59 F~~eedA~kAik~LNGR~F~ 78 (265)
|. .+.-+-|+..|-+|-+.
T Consensus 180 y~-pe~iACaciyLaAR~~e 198 (367)
T KOG0835|consen 180 YS-PESIACACIYLAARNLE 198 (367)
T ss_pred cC-HHHHHHHHHHHHHhhhc
Confidence 65 44445566677766665
No 143
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=33.57 E-value=62 Score=29.51 Aligned_cols=38 Identities=32% Similarity=0.488 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 25 QEHFEDFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 25 qe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
|..|++||..|...+=++ .+ ...|.++++|+.|+..|-
T Consensus 156 q~eF~~lY~av~~vlw~~------il-----~~~F~~~~~~ena~~ql~ 193 (196)
T PF07105_consen 156 QEEFEELYKAVINVLWNE------IL-----SRTFESEEEAENAANQLM 193 (196)
T ss_pred HHHHHHHHHHHHHHHHHH------HH-----HhccCCHHHHHHHHHHHH
Confidence 578999999998766543 00 234999999999998874
No 144
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=32.72 E-value=27 Score=34.07 Aligned_cols=28 Identities=25% Similarity=0.654 Sum_probs=20.8
Q ss_pred CCCcchhhhccccccCCCCCCccccCccc
Q 024601 89 VTDFREATCRQYEENTCNRGGYCNFMHLK 117 (265)
Q Consensus 89 VtdFreA~Cr~~e~g~C~RGg~CNFmH~~ 117 (265)
|.+-+---|-.+..+.|.|-. |.|+|--
T Consensus 66 V~~g~v~aC~Ds~kgrCsR~n-CkylHpp 93 (331)
T KOG2494|consen 66 VSNGRVIACFDSQKGRCSREN-CKYLHPP 93 (331)
T ss_pred ccCCeEEEEeccccCccCccc-ceecCCC
Confidence 334444458888999999977 9999953
No 145
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=31.16 E-value=62 Score=30.00 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeC-CeeEEEEe
Q 024601 31 FYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYA-GRPIIVDF 86 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~-GR~I~vEf 86 (265)
..+++++-|.-|.+|.-|.-..+.+++.|.++..|..|..+|.|-..- .-++.+.+
T Consensus 162 ~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 345777777777777766666677888899999999999999987665 44554444
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=30.71 E-value=46 Score=33.65 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCeeEEEEecCCCC-----------ceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 34 DLFEELNKYGEIESLNICDNLAD-----------HMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~N~g~-----------hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.|...|.-.|+|.++.|.-+..+ |-|.+...+.. .+.|....|=++.|+|-.++
T Consensus 23 qm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~v-aQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 23 QMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTV-AQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred HHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeH-HhhhccceeeeeeEEEEecC
Confidence 45566788899999888776533 33888887764 46677788888888876653
No 147
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=30.04 E-value=51 Score=31.46 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCeeEEEEec-CCC------CceecCHHHHHHHHHHhCCceeCC
Q 024601 33 EDLFEELNKYGEIESLNICD-NLA------DHMFREEEQAARALKSLSGRFYAG 79 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~-N~g------~hlF~~eedA~kAik~LNGR~F~G 79 (265)
+.+..+|+.||+|+.-+||- +.+ .+.|...-.|.+|...++-.-|.|
T Consensus 46 dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 46 DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred HHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 45777899999998766654 433 344999999999999997776664
No 148
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=27.13 E-value=4.7e+02 Score=27.30 Aligned_cols=42 Identities=7% Similarity=0.183 Sum_probs=32.0
Q ss_pred eeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 45 IESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 45 I~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
|-.|.|.+++.++.- ....|...+..|++.++.|++|.++.+
T Consensus 519 ig~i~i~~~~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (629)
T PRK11634 519 IGNIKLFASHSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLL 560 (629)
T ss_pred CCcEEEeCCceEEEc-ChhhHHHHHHHhccccccCCceEEEEC
Confidence 455566565554443 356788999999999999999999976
No 149
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=26.96 E-value=2e+02 Score=28.30 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCCce------ecCHHHHHHHHHHhCCceeCC
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM------FREEEQAARALKSLSGRFYAG 79 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~hl------F~~eedA~kAik~LNGR~F~G 79 (265)
..+|.++|.+.+.-|.+.|...++++|--.-|+ ++++..-+ +.+.++-++++... ..-++|
T Consensus 173 ~~i~~e~lw~nl~yFL~~v~PvAEe~gV~laiH-PDDPP~~~~GlpRi~~~~e~~~~~~~~~-~Sp~nG 239 (351)
T PF03786_consen 173 GGIDEEQLWENLKYFLEAVIPVAEEAGVKLAIH-PDDPPWPLFGLPRIVSTAEDLKRILDLV-DSPANG 239 (351)
T ss_dssp CT--HHHHHHHHHHHHHHHHHHHHHCT-EEEEE---SSSS-BTTB---TTSHHHHHHHHHCT--STTEE
T ss_pred cCCCHHHHHHHHHHHHHhhhHHHHHhCCEEEeC-CCCCCCccCCCCcccCCHHHHHHHHHhC-CCcccc
Confidence 457899999999999999999999999666555 45543323 78888887777654 333443
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=26.31 E-value=3.2e+02 Score=21.98 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeC
Q 024601 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYA 78 (265)
Q Consensus 16 ~~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~ 78 (265)
++.+|.+.|.+.+++. | .|...=+.++-++ +++=|.+.+.|.+-.+.++|+...
T Consensus 10 Pn~~t~~~L~~~l~~~-------~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 10 PNKYTQEMLIQILDEH-------F--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CCCCCHHHHHHHHHHh-------c--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 3568888888755543 2 3676667777543 334499999999999999998875
No 151
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=25.70 E-value=37 Score=32.45 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=23.5
Q ss_pred CcchhhhccccccCCCCCCccccCccccCCH
Q 024601 91 DFREATCRQYEENTCNRGGYCNFMHLKRISR 121 (265)
Q Consensus 91 dFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr 121 (265)
..+.-.|+-+.+|.|+.+..|.|+|=..+..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCccc
Confidence 4555678888888888888888888776655
No 152
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=25.08 E-value=48 Score=30.12 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=34.0
Q ss_pred hcCCeeEEEEecCCCCce--ecCHHHHHHHHHHhCCceeCCe-eEEEEecC
Q 024601 41 KYGEIESLNICDNLADHM--FREEEQAARALKSLSGRFYAGR-PIIVDFSP 88 (265)
Q Consensus 41 KyGeI~dV~V~~N~g~hl--F~~eedA~kAik~LNGR~F~GR-~I~vEfSp 88 (265)
.|-+.+-+-+.+.+..+. |.+.+.|.+|...|.++.|.|. .+.+-|+-
T Consensus 38 q~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 38 QINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred hhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 333333333344444433 9999999999999999999999 77776653
No 153
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=23.86 E-value=53 Score=33.35 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=32.4
Q ss_pred EEEEecCCCCcchhhhccccccCCCCCCccccCccccCCHH
Q 024601 82 IIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRD 122 (265)
Q Consensus 82 I~vEfSpVtdFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~ 122 (265)
|.|-|...|.-....|.-|.++.|.-|..|.|.|=.-++=+
T Consensus 128 vRVlfl~PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~ls 168 (486)
T KOG2185|consen 128 VRVLFLTPTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLS 168 (486)
T ss_pred eEEEeecCcchhhccchHhhccccccCcccccccCcccchh
Confidence 44556556666778899999999999999999997766544
No 154
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=23.51 E-value=2.4e+02 Score=27.97 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHhcC-CeeEEEEecCCCCceecCHHHHHHHH
Q 024601 20 DPRKIQEHFEDFYEDLF----EELNKYG-EIESLNICDNLADHMFREEEQAARAL 69 (265)
Q Consensus 20 d~eelqe~FdeFyEDV~----eEfsKyG-eI~dV~V~~N~g~hlF~~eedA~kAi 69 (265)
-+.-|.++|+++.+|=- .-..+|| .++.|++..-...+.=...++|.+-+
T Consensus 137 lpkpire~~~dVmedP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~l 191 (403)
T COG2069 137 LPKPIREHYDDVMEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTL 191 (403)
T ss_pred CchhHHHHHHHHhhCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHH
Confidence 35678899998888743 3346899 57777766543322223334444433
No 155
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=23.40 E-value=38 Score=33.53 Aligned_cols=31 Identities=29% Similarity=0.624 Sum_probs=27.1
Q ss_pred chhhhccccccCCCCCCccccCccccCCHHH
Q 024601 93 REATCRQYEENTCNRGGYCNFMHLKRISRDL 123 (265)
Q Consensus 93 reA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L 123 (265)
+.-+|.-+..|+|.||..|-|-|=+++.-+|
T Consensus 160 ~p~Icsf~v~geckRG~ec~yrhEkp~d~~L 190 (377)
T KOG0153|consen 160 RPHICSFFVKGECKRGAECPYRHEKPPDDPL 190 (377)
T ss_pred CCccccceeeccccccccccccccCCCCcch
Confidence 4467999999999999999999999977666
No 156
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=23.40 E-value=87 Score=28.12 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=39.6
Q ss_pred ecCHHH---HHHHHHHhCCceeCCeeEEEEecCCCCcchhhhc-cccccCCCCCCccccCccccCC
Q 024601 59 FREEEQ---AARALKSLSGRFYAGRPIIVDFSPVTDFREATCR-QYEENTCNRGGYCNFMHLKRIS 120 (265)
Q Consensus 59 F~~eed---A~kAik~LNGR~F~GR~I~vEfSpVtdFreA~Cr-~~e~g~C~RGg~CNFmH~~~~s 120 (265)
+.++++ |++++..|...-.-+++|.+++.|...|-.|-=. |.--..-+.+++|-+.+..+..
T Consensus 106 ~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~p~~~yc~~~~~~~~~ 171 (186)
T PRK13014 106 YHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKNPTHPYIVYNDLPKGS 171 (186)
T ss_pred eCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhCCCCCccEEEeChhhh
Confidence 556654 5556666655433378999999999999665322 1111345778999887765544
No 157
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=22.92 E-value=1.7e+02 Score=19.47 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCce
Q 024601 31 FYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRF 76 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~ 76 (265)
+..+|+..|++.|--..+.........+.-...++.+|++.|+..+
T Consensus 16 ~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 16 VAAKMFEALAEAGINIEMISTSEIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHHCCCcEEEEEccCceEEEEEeHHHHHHHHHHHHHHh
Confidence 4557999999999555555433322122345567777888877554
No 158
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=22.90 E-value=36 Score=33.03 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=29.8
Q ss_pred EEEecCCCCcchh-hhccc-cccCCCCCCccccCccccCCHHHHHHhhh
Q 024601 83 IVDFSPVTDFREA-TCRQY-EENTCNRGGYCNFMHLKRISRDLRRQLFG 129 (265)
Q Consensus 83 ~vEfSpVtdFreA-~Cr~~-e~g~C~RGg~CNFmH~~~~sr~L~r~L~~ 129 (265)
.|+|+...+...+ .|.-| ..+.|.++..|.|+|+-.-+....-..|.
T Consensus 93 ~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~ 141 (325)
T KOG1040|consen 93 QCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYK 141 (325)
T ss_pred cCcchhhhhhcccccccccccccccccccCCcccCCChhhhhhccchhh
Confidence 4666654444333 35544 66899999999999998744444333333
No 159
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=21.62 E-value=2e+02 Score=19.52 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecCCCC-c-eecCHHHHHHHHHHhCCcee
Q 024601 30 DFYEDLFEELNKYGEIESLNICDNLAD-H-MFREEEQAARALKSLSGRFY 77 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~N~g~-h-lF~~eedA~kAik~LNGR~F 77 (265)
.+..+|+..|++.|--.++........ + +.-...++.+|++.|+..+|
T Consensus 16 ~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 16 GVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 345679999999996665554311111 2 24456778888998887665
No 160
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.18 E-value=4e+02 Score=20.70 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcC-CeeEEEEecCCCCce----ecCHHHHHHHHHHhCC
Q 024601 29 EDFYEDLFEELNKYG-EIESLNICDNLADHM----FREEEQAARALKSLSG 74 (265)
Q Consensus 29 deFyEDV~eEfsKyG-eI~dV~V~~N~g~hl----F~~eedA~kAik~LNG 74 (265)
.+-.+.+...+++.| +|+++++.-..-+.+ +.+.+.|.++.-.+..
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 566677888888887 899999886655544 7777777777655543
No 161
>PRK11700 hypothetical protein; Provisional
Probab=20.99 E-value=4.9e+02 Score=23.64 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCCce---ecCHHHHHHHHH-------HhCCceeCCeeEEE
Q 024601 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM---FREEEQAARALK-------SLSGRFYAGRPIIV 84 (265)
Q Consensus 19 ~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~hl---F~~eedA~kAik-------~LNGR~F~GR~I~v 84 (265)
+.+.+|..++..|...|...+.+.|= .+..-..||+ -.+.+.|+..-. .|..-..+||||.+
T Consensus 8 ~~~~~l~~dl~~F~~ki~~la~~L~l----dl~~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l 79 (187)
T PRK11700 8 DELQDLLADLPRFEQKIQELADRLGL----DLSQLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICL 79 (187)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCC----CcccccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEE
Confidence 56688889999999999988888772 2333345666 455555555444 35667899999975
No 162
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.92 E-value=81 Score=23.57 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=23.6
Q ss_pred HHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 38 ELNKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 38 EfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
-+++|++|+.+. +++-|.+..+|..++.++.
T Consensus 35 ~~~~f~k~vkL~-----aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 35 DPEKFSKIVKLK-----AFSPFKSAEEALENANAIS 65 (67)
T ss_pred CHHHHhhhhhhh-----hccCCCCHHHHHHHHHHhh
Confidence 345777777665 6777999999998888764
No 163
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.68 E-value=2e+02 Score=19.13 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCcee
Q 024601 31 FYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFY 77 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F 77 (265)
+..+|+..|++.|--..+....+....+.-...++.+|+..|+...|
T Consensus 16 ~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~~~~~~~~~l~~~l~ 62 (63)
T cd04923 16 VAAKMFKALAEAGINIEMISTSEIKISCLVDEDDAEKAVRALHEAFE 62 (63)
T ss_pred HHHHHHHHHHHCCCCEEEEEccCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence 45679999999985444443332222223355777778888876553
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.26 E-value=1.4e+02 Score=30.75 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=33.9
Q ss_pred HHHHHHHhcC-CeeEEEEecCCCC----ce--ecCHHHHHHHHHHhCCceeCC
Q 024601 34 DLFEELNKYG-EIESLNICDNLAD----HM--FREEEQAARALKSLSGRFYAG 79 (265)
Q Consensus 34 DV~eEfsKyG-eI~dV~V~~N~g~----hl--F~~eedA~kAik~LNGR~F~G 79 (265)
||...|..|= .|.+|.|.++... +| |.+..+|..-.+.+||+-|+-
T Consensus 90 Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 90 DLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred HHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3444444433 6889998885432 22 999999999999999999985
No 165
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=20.23 E-value=74 Score=35.12 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=44.8
Q ss_pred HHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCC--eeEEEEec
Q 024601 35 LFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAG--RPIIVDFS 87 (265)
Q Consensus 35 V~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~G--R~I~vEfS 87 (265)
+..+|..||.|..|.+-.. .+.++|++...|+.|+..|-|--|+| +.|.|.|+
T Consensus 472 l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 472 LNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred HHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 5567889999999888654 45677999999999999999999996 66888886
Done!