Query 024601
Match_columns 265
No_of_seqs 258 out of 967
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.8 5E-20 1.7E-24 144.1 3.1 88 1-88 9-104 (104)
2 3v4m_A Splicing factor U2AF 65 99.7 6.6E-17 2.3E-21 126.7 4.9 78 17-94 12-101 (105)
3 3s6e_A RNA-binding protein 39; 99.6 7.6E-17 2.6E-21 129.1 3.8 78 17-94 14-97 (114)
4 3ue2_A Poly(U)-binding-splicin 99.6 1.6E-16 5.6E-21 127.7 3.0 76 16-94 26-113 (118)
5 2pe8_A Splicing factor 45; RRM 99.5 2.9E-15 9.8E-20 117.6 2.7 75 17-94 15-98 (105)
6 3dxb_A Thioredoxin N-terminall 99.4 1.1E-13 3.9E-18 118.2 3.0 75 17-94 131-217 (222)
7 2dit_A HIV TAT specific factor 99.4 1.1E-12 3.7E-17 102.1 8.2 77 17-93 22-106 (112)
8 3pgw_S U1-70K; protein-RNA com 99.2 2.3E-10 7.9E-15 109.4 13.1 70 31-100 115-192 (437)
9 1x4c_A Splicing factor, argini 99.0 6.2E-10 2.1E-14 85.5 8.5 56 33-88 30-91 (108)
10 2dnp_A RNA-binding protein 14; 99.0 4.6E-10 1.6E-14 83.1 7.1 57 33-89 24-80 (90)
11 2dgu_A Heterogeneous nuclear r 99.0 5E-10 1.7E-14 85.0 7.3 56 33-88 26-81 (103)
12 2dgt_A RNA-binding protein 30; 99.0 5.6E-10 1.9E-14 83.0 6.8 56 33-88 25-80 (92)
13 4fxv_A ELAV-like protein 1; RN 99.0 6.1E-10 2.1E-14 85.4 6.7 56 33-88 34-97 (99)
14 3s8s_A Histone-lysine N-methyl 99.0 6.7E-10 2.3E-14 87.0 6.9 58 33-90 21-86 (110)
15 2e5h_A Zinc finger CCHC-type a 99.0 1E-09 3.5E-14 81.3 6.9 56 33-88 31-94 (94)
16 1whx_A Hypothetical protein ri 99.0 6.8E-10 2.3E-14 86.4 6.2 61 33-93 25-87 (111)
17 2xnq_A Nuclear polyadenylated 99.0 9.5E-10 3.2E-14 83.5 6.7 56 33-88 38-93 (97)
18 2dnq_A RNA-binding protein 4B; 99.0 7.5E-10 2.6E-14 82.0 6.0 57 33-89 23-79 (90)
19 3bs9_A Nucleolysin TIA-1 isofo 99.0 1.3E-09 4.3E-14 79.5 6.7 56 33-88 21-84 (87)
20 3mdf_A Peptidyl-prolyl CIS-tra 99.0 1.2E-09 4E-14 79.4 6.4 56 33-88 22-85 (85)
21 2dgx_A KIAA0430 protein; RRM d 98.9 1.6E-09 5.6E-14 81.5 7.3 64 18-88 20-88 (96)
22 2cqc_A Arginine/serine-rich sp 98.9 1.6E-09 5.5E-14 80.1 6.8 56 33-88 30-93 (95)
23 4a8x_A RNA-binding protein wit 98.9 1.4E-09 4.7E-14 79.3 6.3 56 33-88 19-83 (88)
24 3ulh_A THO complex subunit 4; 98.9 1.6E-09 5.6E-14 82.1 6.7 56 33-88 44-106 (107)
25 2ywk_A Putative RNA-binding pr 98.9 1.4E-09 4.8E-14 80.6 6.0 56 33-88 31-93 (95)
26 3beg_B Splicing factor, argini 98.9 1.4E-09 4.8E-14 84.9 6.2 53 33-85 31-84 (115)
27 2cpd_A Apobec-1 stimulating pr 98.9 2.1E-09 7E-14 80.9 6.8 57 33-89 30-88 (99)
28 3md1_A Nuclear and cytoplasmic 98.9 2E-09 7E-14 77.7 6.5 56 33-88 16-79 (83)
29 2dnz_A Probable RNA-binding pr 98.9 1.3E-09 4.4E-14 80.9 5.5 57 33-89 20-84 (95)
30 2dgo_A Cytotoxic granule-assoc 98.9 1.9E-09 6.6E-14 82.9 6.7 56 33-88 30-93 (115)
31 4f25_A Polyadenylate-binding p 98.9 1.6E-09 5.3E-14 84.5 6.3 56 33-88 20-81 (115)
32 2kvi_A Nuclear polyadenylated 98.9 7E-10 2.4E-14 83.4 4.1 57 33-89 26-82 (96)
33 2cq3_A RNA-binding protein 9; 98.9 2.1E-09 7.3E-14 81.1 6.5 57 33-89 30-92 (103)
34 2jvo_A Nucleolar protein 3; nu 98.9 1.4E-09 4.8E-14 84.4 5.6 57 33-89 46-102 (108)
35 2cqi_A Nucleolysin TIAR; RNA r 98.9 2.6E-09 8.9E-14 80.7 6.9 57 33-89 30-92 (103)
36 1wf1_A RNA-binding protein RAL 98.9 1.3E-09 4.3E-14 83.7 4.9 56 33-88 43-98 (110)
37 3ns6_A Eukaryotic translation 98.9 2.2E-09 7.6E-14 81.7 6.2 59 29-87 23-90 (100)
38 1x4a_A Splicing factor, argini 98.9 3.3E-09 1.1E-13 81.1 7.1 57 33-89 37-98 (109)
39 2a3j_A U1 small nuclear ribonu 98.9 2.5E-09 8.6E-14 86.4 6.6 65 19-90 41-110 (127)
40 2cq0_A Eukaryotic translation 98.9 1.5E-09 5.3E-14 81.9 5.0 57 33-89 30-94 (103)
41 1x5p_A Negative elongation fac 98.9 3E-09 1E-13 79.8 6.6 58 33-90 28-87 (97)
42 1x5s_A Cold-inducible RNA-bind 98.9 1.5E-09 5E-14 81.7 4.8 56 33-88 27-90 (102)
43 1why_A Hypothetical protein ri 98.9 3.1E-09 1.1E-13 79.6 6.6 56 33-88 32-91 (97)
44 2cqb_A Peptidyl-prolyl CIS-tra 98.9 2E-09 6.7E-14 81.0 5.5 58 33-90 27-92 (102)
45 2krb_A Eukaryotic translation 98.9 9E-10 3.1E-14 80.2 3.4 56 29-84 18-80 (81)
46 1whw_A Hypothetical protein ri 98.9 3.9E-09 1.3E-13 79.0 7.0 58 33-90 23-88 (99)
47 2cpi_A CCR4-NOT transcription 98.9 1.5E-09 5.3E-14 83.9 5.0 52 37-88 37-99 (111)
48 1x5u_A Splicing factor 3B subu 98.9 2.6E-09 8.9E-14 80.7 6.0 57 33-89 30-94 (105)
49 2x1f_A MRNA 3'-END-processing 98.9 3.3E-09 1.1E-13 79.3 6.3 58 33-90 17-82 (96)
50 2ytc_A PRE-mRNA-splicing facto 98.9 3E-09 1E-13 77.4 5.9 56 33-88 27-85 (85)
51 2do0_A HnRNP M, heterogeneous 98.9 3.4E-09 1.2E-13 81.2 6.4 57 33-89 30-93 (114)
52 2cph_A RNA binding motif prote 98.9 2.4E-09 8.3E-14 81.0 5.6 58 33-90 30-97 (107)
53 2cq2_A Hypothetical protein LO 98.9 3.3E-09 1.1E-13 85.4 6.6 60 33-92 42-108 (114)
54 1nu4_A U1A RNA binding domain; 98.9 5.3E-09 1.8E-13 77.8 7.3 66 17-89 18-88 (97)
55 2cpz_A CUG triplet repeat RNA- 98.9 3.5E-09 1.2E-13 81.6 6.4 57 33-89 40-104 (115)
56 2nlw_A Eukaryotic translation 98.9 1.5E-09 5.3E-14 83.1 4.3 58 31-88 34-98 (105)
57 2do4_A Squamous cell carcinoma 98.9 3.1E-09 1.1E-13 79.8 5.9 56 33-88 32-94 (100)
58 3ex7_B RNA-binding protein 8A; 98.9 2.9E-09 1E-13 83.1 5.9 56 33-88 37-100 (126)
59 2d9p_A Polyadenylate-binding p 98.8 2.1E-09 7.2E-14 81.2 4.8 57 33-89 30-92 (103)
60 2jvr_A Nucleolar protein 3; RN 98.8 3.8E-09 1.3E-13 83.7 6.4 56 33-88 43-103 (111)
61 1x5t_A Splicing factor 3B subu 98.8 2.5E-09 8.6E-14 79.4 5.0 57 33-89 20-85 (96)
62 2e44_A Insulin-like growth fac 98.8 5.7E-09 2E-13 77.6 6.8 58 33-90 30-92 (96)
63 1p27_B RNA-binding protein 8A; 98.8 3.3E-09 1.1E-13 80.3 5.5 56 33-88 38-101 (106)
64 2dnm_A SRP46 splicing factor; 98.8 2.4E-09 8.1E-14 80.9 4.5 57 33-89 28-92 (103)
65 1x4g_A Nucleolysin TIAR; struc 98.8 5.2E-09 1.8E-13 80.1 6.4 57 33-89 40-98 (109)
66 2err_A Ataxin-2-binding protei 98.8 2.8E-09 9.4E-14 82.4 4.6 56 33-88 44-105 (109)
67 2fy1_A RNA-binding motif prote 98.8 4.5E-09 1.5E-13 82.3 5.9 57 33-89 22-85 (116)
68 1p1t_A Cleavage stimulation fa 98.8 3.3E-09 1.1E-13 79.9 4.9 59 33-91 23-89 (104)
69 2cpf_A RNA binding motif prote 98.8 5.6E-09 1.9E-13 78.0 6.1 57 33-89 20-87 (98)
70 2kt5_A RNA and export factor-b 98.8 6E-09 2.1E-13 81.5 6.5 57 33-89 50-113 (124)
71 1u6f_A Tcubp1, RNA-binding pro 98.8 5.4E-09 1.8E-13 82.9 6.1 60 31-90 55-122 (139)
72 2la6_A RNA-binding protein FUS 98.8 4.8E-09 1.6E-13 78.8 5.3 55 33-87 28-98 (99)
73 2dnr_A Synaptojanin-1; RRM dom 98.8 8.5E-09 2.9E-13 80.9 6.9 62 30-93 27-88 (91)
74 1h2v_Z 20 kDa nuclear CAP bind 98.8 7.1E-09 2.4E-13 84.1 6.7 58 31-88 52-117 (156)
75 1x4d_A Matrin 3; structural ge 98.8 3.3E-09 1.1E-13 83.2 4.5 56 33-88 31-90 (102)
76 2cqd_A RNA-binding region cont 98.8 4.9E-09 1.7E-13 80.9 5.4 56 33-89 32-95 (116)
77 2khc_A Testis-specific RNP-typ 98.8 3E-09 1E-13 82.2 4.2 56 32-87 54-117 (118)
78 1oo0_B CG8781-PA, drosophila Y 98.8 7E-09 2.4E-13 79.1 6.2 56 33-88 41-104 (110)
79 2dgv_A HnRNP M, heterogeneous 98.8 4E-09 1.4E-13 77.7 4.6 57 33-89 23-85 (92)
80 3ucg_A Polyadenylate-binding p 98.8 6.6E-09 2.2E-13 75.9 5.6 55 33-88 21-83 (89)
81 2hvz_A Splicing factor, argini 98.8 3.2E-09 1.1E-13 79.9 4.0 57 33-89 15-74 (101)
82 2cpj_A Non-POU domain-containi 98.8 3.5E-09 1.2E-13 79.6 4.1 57 33-89 30-88 (99)
83 3r27_A HnRNP L, heterogeneous 98.8 6.6E-09 2.2E-13 81.9 5.8 57 33-89 36-96 (100)
84 3p5t_L Cleavage and polyadenyl 98.8 2.9E-09 1E-13 79.1 3.5 56 33-88 16-81 (90)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.8 6.4E-09 2.2E-13 81.8 5.7 55 33-87 78-140 (140)
86 2dnh_A Bruno-like 5, RNA bindi 98.8 6.6E-09 2.2E-13 78.5 5.5 57 33-89 30-96 (105)
87 2jrs_A RNA-binding protein 39; 98.8 5.2E-09 1.8E-13 81.0 4.9 56 33-88 41-104 (108)
88 2wbr_A GW182, gawky, LD47780P; 98.8 1.5E-08 5.3E-13 79.0 7.4 56 33-88 22-79 (89)
89 2bz2_A Negative elongation fac 98.8 5.7E-09 2E-13 82.9 5.0 64 30-93 49-114 (121)
90 2kxn_B Transformer-2 protein h 98.8 6.2E-09 2.1E-13 83.4 5.1 57 33-89 61-125 (129)
91 1sjq_A Polypyrimidine tract-bi 98.8 6.2E-09 2.1E-13 82.6 5.0 59 33-91 31-93 (105)
92 3lqv_A PRE-mRNA branch site pr 98.8 1.2E-08 4.2E-13 78.4 6.5 56 33-88 23-83 (115)
93 3md3_A Nuclear and cytoplasmic 98.8 1.1E-08 3.9E-13 80.6 6.4 56 33-88 102-165 (166)
94 1x4h_A RNA-binding protein 28; 98.8 9.9E-09 3.4E-13 78.1 5.8 57 33-89 30-100 (111)
95 2cpe_A RNA-binding protein EWS 98.7 7.6E-09 2.6E-13 79.3 4.7 57 33-89 30-102 (113)
96 2dgp_A Bruno-like 4, RNA bindi 98.7 8.4E-09 2.9E-13 78.1 4.8 57 33-89 28-95 (106)
97 2dgs_A DAZ-associated protein 98.7 1.1E-08 3.7E-13 76.7 5.3 56 33-89 25-88 (99)
98 2jwn_A Embryonic polyadenylate 98.7 1.3E-08 4.4E-13 79.2 5.9 60 28-88 46-113 (124)
99 2ek1_A RNA-binding protein 12; 98.7 4.4E-09 1.5E-13 78.0 2.9 56 33-88 30-93 (95)
100 1wex_A Hypothetical protein (r 98.7 9.4E-09 3.2E-13 80.2 4.9 59 33-91 30-92 (104)
101 2cq4_A RNA binding motif prote 98.7 1.3E-08 4.4E-13 78.3 5.5 59 29-88 36-102 (114)
102 2g4b_A Splicing factor U2AF 65 98.7 1.6E-08 5.3E-13 80.9 6.1 55 33-87 109-171 (172)
103 2cq1_A PTB-like protein L; RRM 98.7 1.5E-08 5.1E-13 78.8 5.7 59 33-91 30-92 (101)
104 2diu_A KIAA0430 protein; struc 98.7 9.1E-09 3.1E-13 81.4 4.5 64 17-89 19-83 (96)
105 2ad9_A Polypyrimidine tract-bi 98.7 1.3E-08 4.3E-13 82.2 5.5 60 33-92 46-109 (119)
106 2dhg_A TRNA selenocysteine ass 98.7 8.2E-09 2.8E-13 77.8 4.1 56 33-88 24-88 (104)
107 3zzy_A Polypyrimidine tract-bi 98.7 2.4E-08 8E-13 82.1 7.0 69 33-101 43-121 (130)
108 1rk8_A CG8781-PA, CG8781-PA pr 98.7 2E-08 6.9E-13 82.6 6.6 56 33-88 87-150 (165)
109 2qfj_A FBP-interacting repress 98.7 1.4E-08 4.7E-13 84.1 5.6 57 32-88 139-203 (216)
110 2div_A TRNA selenocysteine ass 98.7 1.2E-08 4.2E-13 76.2 4.8 57 33-89 24-93 (99)
111 2kn4_A Immunoglobulin G-bindin 98.7 1.4E-08 4.9E-13 81.9 5.5 57 33-89 85-149 (158)
112 3n9u_C Cleavage and polyadenyl 98.7 2.3E-08 7.7E-13 82.9 6.6 61 28-88 65-135 (156)
113 2i2y_A Fusion protein consists 98.7 1.5E-08 5.2E-13 81.6 5.3 56 33-88 88-146 (150)
114 2e5j_A Methenyltetrahydrofolat 98.7 1.1E-08 3.9E-13 76.7 4.3 56 33-89 34-93 (97)
115 2e5i_A Heterogeneous nuclear r 98.7 2.1E-08 7.3E-13 81.3 6.2 58 33-90 40-102 (124)
116 2lxi_A RNA-binding protein 10; 98.7 7.7E-09 2.6E-13 77.8 3.3 56 33-88 16-81 (91)
117 2lea_A Serine/arginine-rich sp 98.7 1.3E-08 4.5E-13 81.9 4.9 58 32-89 61-126 (135)
118 1wi8_A EIF-4B, eukaryotic tran 98.7 2.2E-08 7.5E-13 75.8 5.8 55 33-89 30-93 (104)
119 2cqp_A RNA-binding protein 12; 98.7 7E-09 2.4E-13 77.4 2.8 56 33-88 30-93 (98)
120 2lkz_A RNA-binding protein 5; 98.7 8.4E-09 2.9E-13 79.3 3.2 56 33-88 24-93 (95)
121 1ufw_A Synaptojanin 2; RNP dom 98.7 2.2E-08 7.7E-13 79.1 5.5 64 23-87 28-92 (95)
122 2mss_A Protein (musashi1); RNA 98.7 9.7E-09 3.3E-13 73.1 3.1 54 33-87 14-75 (75)
123 2f3j_A RNA and export factor b 98.7 2.6E-08 8.9E-13 84.0 6.0 58 33-90 103-167 (177)
124 4f02_A Polyadenylate-binding p 98.7 2.8E-08 9.5E-13 84.2 6.2 56 33-88 118-179 (213)
125 2la4_A Nuclear and cytoplasmic 98.7 2.9E-08 9.8E-13 74.6 5.5 57 32-88 41-99 (101)
126 3tyt_A Heterogeneous nuclear r 98.7 3.6E-08 1.2E-12 84.5 6.9 55 34-88 21-78 (205)
127 2cqh_A IGF-II mRNA-binding pro 98.7 2.2E-08 7.5E-13 74.2 4.8 57 33-89 23-82 (93)
128 1sjr_A Polypyrimidine tract-bi 98.6 3.2E-08 1.1E-12 84.4 6.3 58 33-90 61-124 (164)
129 1x5o_A RNA binding motif, sing 98.6 2.4E-08 8.2E-13 76.6 4.8 56 33-88 40-110 (114)
130 1b7f_A Protein (SXL-lethal pro 98.6 3.5E-08 1.2E-12 78.3 5.8 55 33-87 104-168 (168)
131 2ki2_A SS-DNA binding protein 98.6 6.9E-09 2.4E-13 76.3 1.5 57 33-90 16-80 (90)
132 2dng_A Eukaryotic translation 98.6 3.5E-08 1.2E-12 74.6 5.4 55 33-89 30-92 (103)
133 2dh8_A DAZ-associated protein 98.6 2.1E-08 7.3E-13 75.9 4.1 55 33-88 31-93 (105)
134 1wg1_A KIAA1579 protein, homol 98.6 3.9E-08 1.3E-12 72.7 5.4 59 33-92 20-80 (88)
135 1fxl_A Paraneoplastic encephal 98.6 9.9E-08 3.4E-12 75.2 8.1 59 33-91 17-83 (167)
136 1s79_A Lupus LA protein; RRM, 98.6 2.9E-08 1E-12 76.9 4.6 54 33-87 26-86 (103)
137 1x4f_A Matrin 3; structural ge 98.6 1.8E-08 6E-13 80.6 3.4 56 33-88 41-100 (112)
138 3u1l_A PRE-mRNA-splicing facto 98.6 5.3E-08 1.8E-12 87.3 6.4 60 31-90 156-229 (240)
139 1b7f_A Protein (SXL-lethal pro 98.6 7.5E-08 2.6E-12 76.4 6.6 58 33-90 18-83 (168)
140 2yh0_A Splicing factor U2AF 65 98.6 5.3E-08 1.8E-12 79.5 5.8 57 32-88 128-192 (198)
141 2dis_A Unnamed protein product 98.6 3.8E-08 1.3E-12 74.7 4.6 56 33-88 23-90 (109)
142 3s7r_A Heterogeneous nuclear r 98.6 7.2E-08 2.5E-12 70.4 5.9 54 33-87 26-87 (87)
143 3pgw_A U1-A; protein-RNA compl 98.6 8E-08 2.8E-12 83.6 7.2 60 29-88 218-281 (282)
144 1x4b_A Heterogeneous nuclear r 98.6 4.4E-08 1.5E-12 75.5 4.8 58 30-88 39-104 (116)
145 1fxl_A Paraneoplastic encephal 98.6 7.3E-08 2.5E-12 76.0 6.2 55 33-87 103-167 (167)
146 1uaw_A Mouse-musashi-1; RNP-ty 98.6 2.3E-08 7.7E-13 71.2 2.7 54 33-87 15-76 (77)
147 3md3_A Nuclear and cytoplasmic 98.6 1.3E-07 4.4E-12 74.5 7.3 56 33-88 15-77 (166)
148 2e5g_A U6 snRNA-specific termi 98.6 4.9E-08 1.7E-12 72.8 4.6 57 33-90 23-82 (94)
149 2dgw_A Probable RNA-binding pr 98.6 8.4E-08 2.9E-12 70.8 5.8 55 33-89 25-86 (91)
150 3q2s_C Cleavage and polyadenyl 98.5 3.8E-08 1.3E-12 86.1 4.2 61 28-88 78-148 (229)
151 2rs2_A Musashi-1, RNA-binding 98.5 1.1E-07 3.9E-12 73.3 6.4 56 32-88 39-102 (109)
152 2j76_E EIF-4B, EIF4B, eukaryot 98.5 3.1E-08 1.1E-12 75.0 3.1 54 33-88 34-96 (100)
153 3nmr_A Cugbp ELAV-like family 98.5 9.3E-08 3.2E-12 76.1 5.8 55 33-87 110-174 (175)
154 2lcw_A RNA-binding protein FUS 97.9 1.1E-08 3.7E-13 79.2 0.0 59 30-88 19-93 (116)
155 2d9o_A DNAJ (HSP40) homolog, s 98.5 9.4E-08 3.2E-12 74.6 5.1 55 33-89 32-89 (100)
156 1x4e_A RNA binding motif, sing 98.5 1.2E-08 4.1E-13 74.3 -0.1 55 33-87 20-82 (85)
157 2cpx_A Hypothetical protein FL 98.5 6E-08 2.1E-12 74.3 3.7 58 33-90 40-105 (115)
158 2cjk_A Nuclear polyadenylated 98.5 7.5E-08 2.6E-12 76.5 4.3 56 32-88 101-164 (167)
159 2cqg_A TDP-43, TAR DNA-binding 98.5 2.1E-07 7.2E-12 70.1 6.5 54 33-88 30-91 (103)
160 2adc_A Polypyrimidine tract-bi 98.5 1.4E-07 4.8E-12 80.7 6.2 57 33-89 50-109 (229)
161 1qm9_A Polypyrimidine tract-bi 98.5 9.9E-08 3.4E-12 78.7 5.1 56 33-88 135-195 (198)
162 2fc9_A NCL protein; structure 98.5 6.5E-08 2.2E-12 72.7 3.4 54 33-89 30-90 (101)
163 1qm9_A Polypyrimidine tract-bi 98.5 1.3E-07 4.4E-12 78.0 5.4 57 33-89 19-78 (198)
164 2db1_A Heterogeneous nuclear r 98.5 3.9E-08 1.3E-12 77.1 2.0 57 33-90 32-98 (118)
165 2hzc_A Splicing factor U2AF 65 98.5 2.1E-07 7E-12 67.6 5.6 51 34-85 22-85 (87)
166 2adc_A Polypyrimidine tract-bi 98.5 2.1E-07 7E-12 79.7 6.4 56 33-88 166-226 (229)
167 3smz_A Protein raver-1, ribonu 98.5 1.5E-07 5.3E-12 81.9 5.7 60 33-92 200-266 (284)
168 1fjc_A Nucleolin RBD2, protein 98.5 7.3E-08 2.5E-12 71.6 2.9 56 33-88 31-89 (96)
169 3pgw_A U1-A; protein-RNA compl 98.4 2.7E-07 9.2E-12 80.3 6.9 65 17-88 19-88 (282)
170 4f02_A Polyadenylate-binding p 98.4 3.4E-07 1.2E-11 77.5 7.1 58 33-90 30-95 (213)
171 2ghp_A U4/U6 snRNA-associated 98.4 2.5E-07 8.6E-12 80.8 6.4 55 33-88 226-289 (292)
172 2cpy_A RNA-binding protein 12; 98.4 1.4E-07 4.8E-12 73.1 4.1 55 33-88 30-92 (114)
173 1wg5_A Heterogeneous nuclear r 98.4 1.3E-07 4.6E-12 72.1 3.9 60 33-93 30-97 (104)
174 3egn_A RNA-binding protein 40; 98.4 1.9E-07 6.6E-12 74.5 4.9 58 32-89 59-129 (143)
175 2qfj_A FBP-interacting repress 98.4 2.4E-07 8.3E-12 76.5 5.6 60 32-91 42-109 (216)
176 1iqt_A AUF1, heterogeneous nuc 98.4 8.8E-08 3E-12 67.9 2.5 54 33-87 14-75 (75)
177 2hgl_A HNRPF protein, heteroge 98.4 6E-08 2E-12 79.3 1.2 62 28-90 54-125 (136)
178 1wel_A RNA-binding protein 12; 98.4 5.3E-08 1.8E-12 76.4 0.8 58 33-91 40-105 (124)
179 2dnn_A RNA-binding protein 12; 98.4 1.9E-07 6.5E-12 73.4 3.8 63 29-93 27-96 (109)
180 2m2b_A RNA-binding protein 10; 98.4 8E-08 2.7E-12 76.2 1.5 57 32-89 37-107 (131)
181 1l3k_A Heterogeneous nuclear r 98.4 5.2E-07 1.8E-11 73.4 6.3 55 33-88 119-181 (196)
182 2fc8_A NCL protein; structure 98.3 3.1E-07 1.1E-11 68.9 4.0 55 34-88 31-90 (102)
183 1fj7_A Nucleolin RBD1, protein 98.3 8.6E-08 2.9E-12 72.0 0.9 55 33-88 32-93 (101)
184 1fje_B Nucleolin RBD12, protei 98.3 2.8E-07 9.7E-12 74.1 3.8 55 33-88 114-172 (175)
185 1wez_A HnRNP H', FTP-3, hetero 98.3 1.1E-07 3.6E-12 73.1 0.5 55 33-89 30-91 (102)
186 2hgn_A Heterogeneous nuclear r 98.3 1.1E-07 3.9E-12 78.0 0.5 61 29-91 57-124 (139)
187 1l3k_A Heterogeneous nuclear r 98.3 1.1E-06 3.6E-11 71.6 6.2 56 33-89 28-91 (196)
188 2lmi_A GRSF-1, G-rich sequence 98.3 1.6E-07 5.5E-12 72.0 0.8 56 33-89 26-91 (107)
189 3smz_A Protein raver-1, ribonu 98.2 2.2E-06 7.5E-11 74.5 7.2 57 33-89 110-174 (284)
190 2xs2_A Deleted in azoospermia- 98.2 5.4E-07 1.9E-11 67.7 2.7 54 33-88 24-84 (102)
191 3tht_A Alkylated DNA repair pr 98.2 1.5E-06 5.1E-11 81.6 5.9 92 32-131 34-132 (345)
192 3sde_A Paraspeckle component 1 98.2 2.9E-06 9.9E-11 74.0 6.9 56 33-88 37-94 (261)
193 2voo_A Lupus LA protein; RNA-b 98.1 2.2E-06 7.6E-11 72.9 5.5 58 29-87 120-184 (193)
194 2dha_A FLJ20171 protein; RRM d 98.1 2.6E-07 8.9E-12 74.3 -0.4 65 28-93 33-108 (123)
195 2ghp_A U4/U6 snRNA-associated 98.1 2.6E-06 9E-11 74.3 5.9 57 33-89 132-196 (292)
196 2dnl_A Cytoplasmic polyadenyla 98.1 2.3E-06 7.8E-11 66.2 4.1 56 33-91 23-89 (114)
197 3nmr_A Cugbp ELAV-like family 98.1 3.8E-06 1.3E-10 66.7 5.4 56 33-88 18-86 (175)
198 3d2w_A TAR DNA-binding protein 98.1 4.4E-06 1.5E-10 62.4 5.2 52 33-88 26-82 (89)
199 3sde_A Paraspeckle component 1 98.1 3.7E-06 1.3E-10 73.3 5.2 56 33-88 111-177 (261)
200 3tyt_A Heterogeneous nuclear r 98.0 6.6E-06 2.3E-10 70.4 5.3 56 32-87 137-204 (205)
201 1wf0_A TDP-43, TAR DNA-binding 97.9 5.4E-06 1.9E-10 60.7 3.5 52 33-88 20-76 (88)
202 2cjk_A Nuclear polyadenylated 97.9 8.4E-06 2.9E-10 64.6 4.6 55 33-89 18-80 (167)
203 2g4b_A Splicing factor U2AF 65 97.9 2.8E-05 9.7E-10 61.8 7.5 55 34-89 20-87 (172)
204 2j8a_A Histone-lysine N-methyl 97.9 9.7E-06 3.3E-10 67.7 4.7 57 33-89 21-95 (136)
205 1fje_B Nucleolin RBD12, protei 97.9 3.1E-06 1.1E-10 68.0 1.4 64 18-89 24-90 (175)
206 2hgm_A HNRPF protein, heteroge 97.9 2E-06 6.8E-11 69.7 -0.0 59 28-88 52-119 (126)
207 2yh0_A Splicing factor U2AF 65 97.8 3.1E-05 1.1E-09 62.9 6.4 54 34-88 20-86 (198)
208 1owx_A Lupus LA protein, SS-B, 97.6 6.5E-05 2.2E-09 61.1 4.9 56 33-88 34-94 (121)
209 2l9w_A U4/U6 snRNA-associated- 96.8 0.0023 7.8E-08 52.2 6.3 59 16-85 30-95 (117)
210 1wey_A Calcipressin 1; structu 96.0 0.0099 3.4E-07 47.5 5.5 68 17-91 16-85 (104)
211 1wwh_A Nucleoporin 35, nucleop 95.9 0.011 3.9E-07 48.1 5.5 48 33-81 38-87 (119)
212 2d9n_A Cleavage and polyadenyl 90.7 0.087 3E-06 38.9 1.5 30 90-119 6-35 (77)
213 1m9o_A Tristetraproline; Cys3H 90.4 0.13 4.4E-06 37.2 2.2 33 88-120 6-39 (77)
214 3d2q_A Muscleblind-like protei 90.2 0.072 2.4E-06 38.8 0.6 25 94-118 6-31 (70)
215 2rhk_C Cleavage and polyadenyl 88.7 0.15 5.1E-06 37.5 1.4 32 88-119 10-41 (72)
216 3d2n_A Muscleblind-like protei 88.7 0.16 5.5E-06 38.5 1.6 26 93-118 8-34 (83)
217 3d2q_A Muscleblind-like protei 88.5 0.13 4.6E-06 37.3 1.0 28 90-118 38-65 (70)
218 2e5s_A Otthump00000018578; ZF- 88.0 0.19 6.4E-06 39.2 1.7 35 90-128 52-86 (98)
219 3p3d_A Nucleoporin 53; structu 87.7 0.38 1.3E-05 39.8 3.4 53 34-87 22-96 (132)
220 2rpp_A Muscleblind-like protei 86.6 0.17 5.9E-06 39.0 0.7 27 93-119 16-43 (89)
221 2d9m_A Zinc finger CCCH-type d 86.3 0.23 7.9E-06 37.0 1.2 33 88-125 16-48 (69)
222 2cqe_A KIAA1064 protein; CCCH 84.5 0.39 1.3E-05 37.2 1.8 24 93-116 12-35 (98)
223 2e5s_A Otthump00000018578; ZF- 83.8 0.13 4.3E-06 40.2 -1.3 27 93-119 19-46 (98)
224 1m9o_A Tristetraproline; Cys3H 81.4 0.3 1E-05 35.3 0.0 28 91-118 47-75 (77)
225 1whv_A Poly(A)-specific ribonu 80.9 1.2 4E-05 35.4 3.2 41 33-73 30-70 (100)
226 3d2n_A Muscleblind-like protei 80.0 0.86 2.9E-05 34.5 2.1 33 92-128 41-73 (83)
227 2i2y_A Fusion protein consists 79.4 0.43 1.5E-05 37.6 0.3 30 59-89 20-50 (150)
228 3u1l_A PRE-mRNA-splicing facto 79.4 0.47 1.6E-05 42.2 0.6 30 95-124 71-100 (240)
229 2rhk_C Cleavage and polyadenyl 77.3 0.53 1.8E-05 34.5 0.3 47 72-121 23-71 (72)
230 2d9n_A Cleavage and polyadenyl 74.4 0.97 3.3E-05 33.2 1.0 36 84-120 27-64 (77)
231 2cqe_A KIAA1064 protein; CCCH 73.4 1.9 6.5E-05 33.3 2.5 25 94-118 36-61 (98)
232 3ctr_A Poly(A)-specific ribonu 72.8 1 3.5E-05 35.7 0.9 41 33-73 20-60 (101)
233 2rpp_A Muscleblind-like protei 72.5 1.4 4.7E-05 33.9 1.5 32 93-128 50-81 (89)
234 2fc6_A Nuclear, target of EGR1 68.6 1.6 5.3E-05 30.7 0.9 28 93-120 19-47 (50)
235 1k4n_A Protein EC4020, protein 60.6 16 0.00053 31.9 5.9 61 19-84 12-83 (192)
236 3pq1_A Poly(A) RNA polymerase; 48.2 5.7 0.00019 38.6 1.2 40 32-71 66-108 (464)
237 2g0c_A ATP-dependent RNA helic 39.4 13 0.00043 26.3 1.7 43 44-87 32-74 (76)
238 3pim_A Peptide methionine sulf 36.5 11 0.00038 32.6 1.2 56 59-118 125-185 (187)
239 2kn4_A Immunoglobulin G-bindin 36.1 18 0.00062 28.1 2.3 23 54-76 15-37 (158)
240 2cu1_A Mitogen-activated prote 35.2 61 0.0021 25.7 5.1 41 34-74 32-73 (103)
241 2jrh_A Mitogen-activated prote 33.2 65 0.0022 25.1 4.9 53 33-86 27-80 (94)
242 2c60_A Human mitogen-activated 29.8 72 0.0025 25.5 4.7 41 33-73 54-95 (111)
243 2npt_B Mitogen-activated prote 25.8 84 0.0029 24.7 4.4 41 33-73 43-84 (100)
244 1hy9_A Cocaine and amphetamine 22.7 35 0.0012 22.9 1.4 13 104-116 26-38 (41)
245 3et6_A Soluble guanylyl cyclas 21.1 1.6E+02 0.0055 23.4 5.5 34 17-50 25-58 (190)
246 1ybt_A Hydrolase, alpha/beta h 20.0 1.7E+02 0.0058 23.6 5.5 50 20-73 36-88 (184)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.78 E-value=5e-20 Score=144.10 Aligned_cols=88 Identities=36% Similarity=0.784 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHh
Q 024601 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNL-------ADHMFREEEQAARALKSL 72 (265)
Q Consensus 1 mYqnP~~~~~~~~~~~~~~d~eelqe~FdeFyEDV~eEf-sKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~L 72 (265)
||+||+......+.....+++++|+++|++|++||+++| ++||+|++|.|+.+. +++.|.++++|.+|++.|
T Consensus 9 m~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 9 IYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp EEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 799998765433322245788999999999999999999 999999999999763 456699999999999999
Q ss_pred CCceeCCeeEEEEecC
Q 024601 73 SGRFYAGRPIIVDFSP 88 (265)
Q Consensus 73 NGR~F~GR~I~vEfSp 88 (265)
||++|+||+|.|+|+|
T Consensus 89 ng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 89 NNRWFNGQPIHAELSP 104 (104)
T ss_dssp TTCEETTEECCEEECC
T ss_pred CCCEECCEEEEEEEcC
Confidence 9999999999999987
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=6.6e-17 Score=126.72 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=69.2
Q ss_pred CCCCHHHHH--HHHHHHHHHHHHHHHhcCCeeEEEEecCC----------CCceecCHHHHHHHHHHhCCceeCCeeEEE
Q 024601 17 NPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNL----------ADHMFREEEQAARALKSLSGRFYAGRPIIV 84 (265)
Q Consensus 17 ~~~d~eelq--e~FdeFyEDV~eEfsKyGeI~dV~V~~N~----------g~hlF~~eedA~kAik~LNGR~F~GR~I~v 84 (265)
+++++++|. .+|+++++||.++|++||+|++|.|+.+. +++.|.++++|.+|+++|||++|+||+|.|
T Consensus 12 Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v 91 (105)
T 3v4m_A 12 NMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVT 91 (105)
T ss_dssp SSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 677888775 57999999999999999999999999753 245599999999999999999999999999
Q ss_pred EecCCCCcch
Q 024601 85 DFSPVTDFRE 94 (265)
Q Consensus 85 EfSpVtdFre 94 (265)
+|++.+.|..
T Consensus 92 ~~~~~~~f~~ 101 (105)
T 3v4m_A 92 KYCDPDSYHR 101 (105)
T ss_dssp EEECHHHHHT
T ss_pred EEeCHHHHhh
Confidence 9999887753
No 3
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.64 E-value=7.6e-17 Score=129.13 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=68.8
Q ss_pred CCCCHHHHH--HHHHHHHHHHHHHHHhcCCeeEEEEecCC----CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 17 NPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNL----ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 17 ~~~d~eelq--e~FdeFyEDV~eEfsKyGeI~dV~V~~N~----g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
++|+++++. +.++++.+||+++|++||+|++|.|+++. +++.|.+.++|.+|++.|||+||+||+|.|+|++++
T Consensus 14 Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 14 NMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp SSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred CCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHH
Confidence 567776654 47899999999999999999999998763 456699999999999999999999999999999998
Q ss_pred Ccch
Q 024601 91 DFRE 94 (265)
Q Consensus 91 dFre 94 (265)
+|..
T Consensus 94 ~y~~ 97 (114)
T 3s6e_A 94 TYHN 97 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
No 4
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=1.6e-16 Score=127.72 Aligned_cols=76 Identities=25% Similarity=0.505 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCC------------CCceecCHHHHHHHHHHhCCceeCCeeEE
Q 024601 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL------------ADHMFREEEQAARALKSLSGRFYAGRPII 83 (265)
Q Consensus 16 ~~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~------------g~hlF~~eedA~kAik~LNGR~F~GR~I~ 83 (265)
.+++++++|.+ ++.+||.++|++||+|++|.|+.+. +++.|.++++|.+|+++|||+||+||+|.
T Consensus 26 ~Nm~~~~el~d---dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~ 102 (118)
T 3ue2_A 26 RNMVDPKDIDD---DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 102 (118)
T ss_dssp ESCSCGGGCCT---THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ECCCCHHHHHH---HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 36788887753 5779999999999999999999753 34569999999999999999999999999
Q ss_pred EEecCCCCcch
Q 024601 84 VDFSPVTDFRE 94 (265)
Q Consensus 84 vEfSpVtdFre 94 (265)
|+|+++++|..
T Consensus 103 v~~~~~~~f~~ 113 (118)
T 3ue2_A 103 AEVYDQERFDN 113 (118)
T ss_dssp EEEECHHHHHT
T ss_pred EEEcChHhccc
Confidence 99999988853
No 5
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=2.9e-15 Score=117.57 Aligned_cols=75 Identities=28% Similarity=0.423 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCC---------CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL---------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~---------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+++++++|. +++.+||.++|++||+|++|.|+.+. +++.|.++++|.+|++.|||++|+||+|.|+++
T Consensus 15 Nm~~~~~l~---dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 15 NMVGAGEVD---EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 91 (105)
T ss_dssp SSSCSCCC------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cCCChHHhh---HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 344544443 35678999999999999999998642 345699999999999999999999999999999
Q ss_pred CCCCcch
Q 024601 88 PVTDFRE 94 (265)
Q Consensus 88 pVtdFre 94 (265)
+.+.|..
T Consensus 92 ~~~~f~~ 98 (105)
T 2pe8_A 92 NLDKFRV 98 (105)
T ss_dssp CHHHHHT
T ss_pred CHHHhhh
Confidence 9887765
No 6
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.38 E-value=1.1e-13 Score=118.25 Aligned_cols=75 Identities=24% Similarity=0.497 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCC------------CCceecCHHHHHHHHHHhCCceeCCeeEEE
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL------------ADHMFREEEQAARALKSLSGRFYAGRPIIV 84 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~------------g~hlF~~eedA~kAik~LNGR~F~GR~I~v 84 (265)
+++++++++++ +.+||+++|++||+|.+|.|+.+. +++.|.++++|.+||+.||||||+||+|.|
T Consensus 131 n~v~~~e~~~e---~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 131 NMVDPKDIDDD---LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp SSCCGGGCCTT---HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCHHHHHHH---HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 56677777654 457999999999999999999553 234599999999999999999999999999
Q ss_pred EecCCCCcch
Q 024601 85 DFSPVTDFRE 94 (265)
Q Consensus 85 EfSpVtdFre 94 (265)
+|+++++|+.
T Consensus 208 ~~~~~~~f~~ 217 (222)
T 3dxb_A 208 EVYDQERFDN 217 (222)
T ss_dssp EECCHHHHHT
T ss_pred EEcCHHHhhh
Confidence 9999998864
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=102.14 Aligned_cols=77 Identities=31% Similarity=0.548 Sum_probs=66.4
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHhcCCeeEEEEecC----CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec-C
Q 024601 17 NPLDPRKIQ---EHFEDFYEDLFEELNKYGEIESLNICDN----LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS-P 88 (265)
Q Consensus 17 ~~~d~eelq---e~FdeFyEDV~eEfsKyGeI~dV~V~~N----~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS-p 88 (265)
+++++.+|. +.|+++.+||.++|++||+|.+|.|++. .+++.|.++++|++|++.|||++|+|++|.|+++ |
T Consensus 22 Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 22 NMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp SSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred cCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 556666665 4789999999999999999999988743 4667799999999999999999999999999996 5
Q ss_pred CCCcc
Q 024601 89 VTDFR 93 (265)
Q Consensus 89 VtdFr 93 (265)
.++|.
T Consensus 102 ~~~~~ 106 (112)
T 2dit_A 102 TTDYQ 106 (112)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 67775
No 8
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.16 E-value=2.3e-10 Score=109.39 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcchhhhccc
Q 024601 31 FYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQY 100 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFreA~Cr~~ 100 (265)
..++|.++|++||+|+.|.|+.+ ++||.|.++++|.+||..|||.+|+|++|.|+|+..........+..
T Consensus 115 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~~~~~~ 192 (437)
T 3pgw_S 115 TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRL 192 (437)
T ss_pred CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCCCCCCc
Confidence 45789999999999999999754 57788999999999999999999999999999996544443333333
No 9
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=6.2e-10 Score=85.54 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCeeEEEEec-CCCCceecCHHHHHHHHHHhCCceeCC-----eeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD-NLADHMFREEEQAARALKSLSGRFYAG-----RPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~-N~g~hlF~~eedA~kAik~LNGR~F~G-----R~I~vEfSp 88 (265)
+||.+.|++||+|+.|.|+. .++++.|.++++|++||+.|||..|.| ++|.|+++.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred HHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 46777889999999999988 567788999999999999999999999 999999974
No 10
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=83.11 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||...|++||+|.+|.|+.+.+++.|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 24 ~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 24 QELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp HHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 356677899999999999999999999999999999999999999999999999854
No 11
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.03 E-value=5e-10 Score=85.04 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..|.|+++.+++.|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 26 ~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 26 EILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp HHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 35667788999999999999999999999999999999999999999999999984
No 12
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=5.6e-10 Score=82.95 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|..+.+++.|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 25 ~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 25 QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp HHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 35677889999999999999999999999999999999999999999999999984
No 13
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.00 E-value=6.1e-10 Score=85.35 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 34 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 356677899999999999865 35677999999999999999999999999999974
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.99 E-value=6.7e-10 Score=86.97 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
++|.+.|++||+|++|.|+.+. +++.|.+.++|++||+.|||..|.|++|.|++++..
T Consensus 21 ~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred HHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3566678999999999998653 567799999999999999999999999999998643
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=81.27 Aligned_cols=56 Identities=21% Similarity=0.443 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+|+.
T Consensus 31 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 31 NDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 467788899999999999865 45677999999999999999999999999999873
No 16
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=6.8e-10 Score=86.40 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
+||.+.|++||+|..|.|+.. .+++.|.+.++|++||+.|||..|.|++|.|+|++...|.
T Consensus 25 ~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 25 AEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp HHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccC
Confidence 467778899999999999754 5677899999999999999999999999999999876653
No 17
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.97 E-value=9.5e-10 Score=83.52 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|.+.++++.|.+.++|.+|+..|||..|.|++|.|+++.
T Consensus 38 ~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 38 EDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp HHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 45777889999999999999999999999999999999999999999999999975
No 18
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=7.5e-10 Score=81.96 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+++.+++.|.+.++|++|+..|||..+.|++|.|+++..
T Consensus 23 ~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 23 QEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp HHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred HHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 456778899999999999999999999999999999999999999999999999853
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.95 E-value=1.3e-09 Score=79.50 Aligned_cols=56 Identities=16% Similarity=0.375 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|++.|||..++|++|.|+++.
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 21 AAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 457777899999999999876 35667999999999999999999999999999974
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.95 E-value=1.2e-09 Score=79.36 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 22 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 22 KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467778899999999999654 35677999999999999999999999999999873
No 21
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.6e-09 Score=81.54 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEe-----cCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 18 PLDPRKIQEHFEDFYEDLFEELNKYGEIESLNIC-----DNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 18 ~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~-----~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+++++|.. .|.+.|++||+|.+|.|+ +.++++.|.+.++|++||+.|||..+.|++|.|+++.
T Consensus 20 ~~~~~~l~~-------~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 20 RLSRKELQQ-------LLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp TSCHHHHHH-------HHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCHHHHHH-------HHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 456666653 366888999999999999 4467788999999999999999999999999999984
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.6e-09 Score=80.15 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|.+|.|+.+ .+++.|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 30 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 30 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred HHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 357778899999999999864 35667999999999999999999999999999974
No 23
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=79.25 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCeeEEEEec---------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD---------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~---------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+. ..+++.|.+.++|++|++.|||..+.|++|.|+++.
T Consensus 19 ~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 19 DHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 35777889999999999954 346677999999999999999999999999999974
No 24
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.93 E-value=1.6e-09 Score=82.11 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|+.|.|+.+ .+++.|.+.++|++||+.|||..+.|++|.|+++.
T Consensus 44 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 44 ADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 467778899999999999855 46677999999999999999999999999999974
No 25
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.92 E-value=1.4e-09 Score=80.63 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|++|.|+.+ .+++.|.+.++|.+|++.|||..|.|++|.|+++.
T Consensus 31 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 31 EILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 467778899999999999875 45677999999999999999999999999999874
No 26
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.92 E-value=1.4e-09 Score=84.94 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCeeEEEEec-CCCCceecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 33 EDLFEELNKYGEIESLNICD-NLADHMFREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~-N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
+||.+.|++||+|+.|.|+. .++++.|.++++|++||+.|||..|+|++|.+.
T Consensus 31 ~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 31 QDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp THHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred HHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 35666789999999999988 567788999999999999999999999995443
No 27
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.1e-09 Score=80.88 Aligned_cols=57 Identities=30% Similarity=0.455 Sum_probs=52.6
Q ss_pred HHHHHHHHhc--CCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKY--GEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKy--GeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++| |.|..|.++++++++.|.+.++|++||..|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 30 EMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp HHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred HHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4567778999 99999999999999999999999999999999999999999999853
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.91 E-value=2e-09 Score=77.71 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|+..|||..++|++|.|+++.
T Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 467778899999999999865 35677999999999999999999999999999985
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=80.86 Aligned_cols=57 Identities=28% Similarity=0.409 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 20 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 20 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred HHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 456778899999999999876 356679999999999999999999999999999853
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.91 E-value=1.9e-09 Score=82.90 Aligned_cols=56 Identities=20% Similarity=0.420 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||.|+.|.|+.+ ++++.|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 30 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 467778899999999999876 35677999999999999999999999999999984
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.91 E-value=1.6e-09 Score=84.51 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|++|.|+.+ ++++.|.+.++|++||+.|||..+.|++|.|+++.
T Consensus 20 ~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 20 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred HHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 457777899999999999865 46788999999999999999999999999999975
No 32
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=7e-10 Score=83.41 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|.+..+++.|.+.++|++|+..|||..+.|++|.|+++..
T Consensus 26 ~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 26 EDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp HHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 467778899999999999999999999999999999999999999999999999853
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.1e-09 Score=81.13 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|++|.|+.+ .+++.|.+.++|++||..|||..|+|++|.|+++..
T Consensus 30 ~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 30 PDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp HHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 457778899999999999855 466779999999999999999999999999999853
No 34
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.90 E-value=1.4e-09 Score=84.37 Aligned_cols=57 Identities=28% Similarity=0.517 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|++..+++.|.+.++|++|++.|||..|+|++|.|+++..
T Consensus 46 ~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 46 SELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 567888999999999999988899999999999999999999999999999999853
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.6e-09 Score=80.68 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++|+..|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 30 VLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 467778899999999999874 456779999999999999999999999999999853
No 36
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.89 E-value=1.3e-09 Score=83.69 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|++|.|...++++.|.+.++|++|++.|||..|+|++|.|+++.
T Consensus 43 ~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 43 SDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred HHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 56777889999999999998899999999999999999999999999999999985
No 37
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.89 E-value=2.2e-09 Score=81.70 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCC-eeEEEEec
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAG-RPIIVDFS 87 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~G-R~I~vEfS 87 (265)
+...++|.+.|++||+|.+|.|+.+ ++++.|.+.++|++||+.|||..|.| ++|.|.++
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 4556799999999999999999854 35677999999999999999999999 99999987
No 38
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=3.3e-09 Score=81.08 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC-----CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-----LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-----~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|..+ ++++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 37 ~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 37 KDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 467788899999999999764 567789999999999999999999999999999853
No 39
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=2.5e-09 Score=86.44 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 19 LDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 19 ~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+++++|.+ .|.+.|++||+|++|.|.. .++|+.|.+.++|.+||+.|||..|.|++|.|+|+...
T Consensus 41 ~~e~~L~~-------~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 41 VPKEKLQA-------LLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp SCHHHHHH-------HHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred CCHHHHHH-------HHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 55555553 6888899999999999975 35778899999999999999999999999999998643
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.5e-09 Score=81.94 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|+.+ .+++.|.+.++|++||..|||..|.|++|.|+++..
T Consensus 30 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 30 TDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp HHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred HHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 457778899999999999876 356779999999999999999999999999999854
No 41
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3e-09 Score=79.85 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|.+|.|... .+++.|.+.++|++||..|||..|.|++|.|+++...
T Consensus 28 ~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 28 TLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp HHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred HHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 567788899999999999754 4667799999999999999999999999999998543
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.5e-09 Score=81.71 Aligned_cols=56 Identities=25% Similarity=0.428 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|+.|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 27 QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp HHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457777889999999999875 35667999999999999999999999999999984
No 43
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=3.1e-09 Score=79.63 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeC--CeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYA--GRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~--GR~I~vEfSp 88 (265)
+||.+.|++||+|++|.|..+ .+++.|.+.++|++|++.|||..+. |++|.|+++.
T Consensus 32 ~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 32 AALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp HHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred HHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 456778899999999999976 5677799999999999999999999 9999999985
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=2e-09 Score=81.03 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|++|.|+.+ ++++.|.+.++|++||+.|||..|.|++|.|+++...
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 27 KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred HHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCC
Confidence 467778899999999999765 3566799999999999999999999999999998543
No 45
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.88 E-value=9e-10 Score=80.22 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEec------CCCCceecCHHHHHHHHHHhCCceeCCe-eEEE
Q 024601 29 EDFYEDLFEELNKYGEIESLNICD------NLADHMFREEEQAARALKSLSGRFYAGR-PIIV 84 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~------N~g~hlF~~eedA~kAik~LNGR~F~GR-~I~v 84 (265)
+...++|.+.|++||+|.+|.|+. ..+++.|.+.++|++|++.|||..|+|+ +|.|
T Consensus 18 ~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 18 EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 345678999999999999999984 3456779999999999999999999999 8865
No 46
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=3.9e-09 Score=78.97 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|++|.|+.+. +++.|.+.++|++|++.|||..|.|++|.|+++...
T Consensus 23 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 23 EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp HHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3577788999999999998653 567799999999999999999999999999998543
No 47
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=1.5e-09 Score=83.87 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=47.3
Q ss_pred HHHHhcCCeeEEEEecC-----------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 37 EELNKYGEIESLNICDN-----------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 37 eEfsKyGeI~dV~V~~N-----------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+.|++||+|.+|.|+.+ ++++.|.++++|++||+.|||..|+|++|.|+++.
T Consensus 37 ~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 37 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp TTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred HHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 88999999999999864 35567999999999999999999999999999975
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.6e-09 Score=80.75 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++||..|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 30 PLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 457778899999999999875 466779999999999999999999999999999853
No 49
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.87 E-value=3.3e-09 Score=79.35 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|.+|.|..+ .+++.|.+.++|++|++.|||..|+|++|.|+++...
T Consensus 17 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 17 EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 467778899999999999865 3556799999999999999999999999999998643
No 50
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=3e-09 Score=77.36 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHh-CCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSL-SGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~L-NGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..|.|+. ..+++.|.+.++|.+|+..| ||..++|++|.|+++.
T Consensus 27 ~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 27 TDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 45777889999999999987 45677799999999999999 9999999999999873
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.4e-09 Score=81.22 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|++|.|+.+ ++++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 30 ~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 30 KKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 456778899999999999875 456779999999999999999999999999999853
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=2.4e-09 Score=80.98 Aligned_cols=58 Identities=16% Similarity=0.393 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCeeEEEEecC---------CCCceecCHHHHHHHHHHh-CCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN---------LADHMFREEEQAARALKSL-SGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---------~g~hlF~~eedA~kAik~L-NGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++||..| ||..|.|++|.|+++...
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 30 REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp HHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred HHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 457778899999999999876 3566799999999999999 999999999999998543
No 53
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.3e-09 Score=85.37 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCcee-----CCeeEEEEecCCCCc
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFY-----AGRPIIVDFSPVTDF 92 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F-----~GR~I~vEfSpVtdF 92 (265)
++|.+.|++||+|++|.|+.+ ++|+.|.+.++|++|++.|||+.+ .|++|++.|+.-..|
T Consensus 42 ~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 42 NQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp HHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 678889999999999999865 677889999999999999999999 799999999854443
No 54
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.86 E-value=5.3e-09 Score=77.76 Aligned_cols=66 Identities=18% Similarity=0.424 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
..+++++|.+ .|++.|++||+|.+|.|.. ..+++.|.+.++|.+|++.|||..|.|++|.|+++..
T Consensus 18 ~~~~~~~l~~-------~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 18 EKIKKDELKK-------SLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp TTSCHHHHHH-------HHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CCCCHHHHHH-------HHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 3456666653 5668899999999999983 5677889999999999999999999999999999854
No 55
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.86 E-value=3.5e-09 Score=81.61 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|++|.|+.+. +++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 40 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp HHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 5678888999999999998753 56779999999999999999999999999999853
No 56
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=83.10 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCeeEEEEec------CCCCceecCHHHHHHHHHHhCCceeCCe-eEEEEecC
Q 024601 31 FYEDLFEELNKYGEIESLNICD------NLADHMFREEEQAARALKSLSGRFYAGR-PIIVDFSP 88 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~------N~g~hlF~~eedA~kAik~LNGR~F~GR-~I~vEfSp 88 (265)
..++|.+.|++||+|.+|.|+. .++++.|.+.++|.+||..|||..|.|+ +|.|+++.
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence 5578999999999999999984 3466779999999999999999999999 99999974
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.1e-09 Score=79.81 Aligned_cols=56 Identities=27% Similarity=0.296 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|++|.|+.+. +++.|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 32 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 32 EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4577788999999999998743 5677999999999999999999999999999984
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.85 E-value=2.9e-09 Score=83.09 Aligned_cols=56 Identities=27% Similarity=0.509 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++||+.|||..|+|++|.|+++.
T Consensus 37 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 37 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 467778899999999999854 46677999999999999999999999999999974
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.1e-09 Score=81.16 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|..|.|+.+ .+++.|.+.++|++||..|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 30 ERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp HHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred HHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 467778899999999999855 466779999999999999999999999999999854
No 60
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.85 E-value=3.8e-09 Score=83.70 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHHhcC-CeeEEEEe----cCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYG-EIESLNIC----DNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyG-eI~dV~V~----~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++|| +|..+.|. +.++++.|.+.++|++||+.|||..|+|++|.|+++.
T Consensus 43 ~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 43 QDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred HHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 46777889999 99999996 4567888999999999999999999999999999974
No 61
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.5e-09 Score=79.42 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCeeEE-EEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESL-NICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV-~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+| .|+.+ .+++.|.++++|++|++.|||..|.|++|.|+++..
T Consensus 20 ~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 20 KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp HHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 4677788999999999 88875 356779999999999999999999999999999854
No 62
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.7e-09 Score=77.65 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEE-EEecCC----CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESL-NICDNL----ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV-~V~~N~----g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|..| .|+.+. +++.|.+.++|++||+.|||..|.|++|.|+++...
T Consensus 30 ~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 30 EVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4677788999999999 577654 678899999999999999999999999999998644
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.3e-09 Score=80.32 Aligned_cols=56 Identities=27% Similarity=0.509 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|.+|.|+.+ .+++.|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 38 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 38 EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 457778899999999999854 35677999999999999999999999999999973
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=2.4e-09 Score=80.89 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|+.+ .+++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 28 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 457778899999999999864 456779999999999999999999999999999853
No 65
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=5.2e-09 Score=80.11 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|...|++||+|..|.|+.+ .+++.|.+.++|++||..|||..|.|++|.|+++..
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 40 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp HHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 567778899999999999865 466779999999999999999999999999999853
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.8e-09 Score=82.37 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|++|.|+.+ ++++.|.+.++|++|+..|||..|+|++|.|+++.
T Consensus 44 ~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 44 PDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp HHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 567888999999999999854 46677999999999999999999999999999974
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.82 E-value=4.5e-09 Score=82.34 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|++|.|+.+ ++++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 22 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 22 KMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp HHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 457778899999999999874 356779999999999999999999999999999853
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=3.3e-09 Score=79.86 Aligned_cols=59 Identities=24% Similarity=0.428 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||+|..|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++....
T Consensus 23 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 23 EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp HHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred HHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 467778899999999999854 46677999999999999999999999999999986443
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.82 E-value=5.6e-09 Score=77.97 Aligned_cols=57 Identities=32% Similarity=0.392 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC-----------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-----------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-----------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|..|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 20 ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87 (98)
T ss_dssp HHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccC
Confidence 356777899999999999853 356679999999999999999999999999999854
No 70
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.81 E-value=6e-09 Score=81.48 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|.+|++.|||..|.|++|.|+++..
T Consensus 50 ~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 50 ADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp HHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred HHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 467778899999999999864 456779999999999999999999999999999854
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.81 E-value=5.4e-09 Score=82.89 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 31 FYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
..+||.+.|++||+|++|.|+.+ ++++.|.+.++|.+||+.|||..|.|++|.|+++...
T Consensus 55 ~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 122 (139)
T 1u6f_A 55 DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG 122 (139)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34678889999999999999854 4667799999999999999999999999999998643
No 72
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.80 E-value=4.8e-09 Score=78.85 Aligned_cols=55 Identities=25% Similarity=0.486 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCeeE--------EEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIES--------LNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~d--------V~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||.|.. |.|..+ .+++.|.+.++|++|++.|||..|.|++|.|+++
T Consensus 28 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 28 ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 457778899999999 888765 3567799999999999999999999999999987
No 73
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=8.5e-09 Score=80.87 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 30 DFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
+++.+|...|+.||+|..+.|..+.+++.|.+.++|.+||+ |||..++||.|.|.+.. .+|-
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt-~dW~ 88 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS-PSGP 88 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC-CSSC
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC-CCcc
Confidence 66778999999999999999999999999999999999998 99999999999999974 4553
No 74
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.80 E-value=7.1e-09 Score=84.05 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 31 FYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
..+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 52 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 52 TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34678889999999999999765 35677999999999999999999999999999985
No 75
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.80 E-value=3.3e-09 Score=83.16 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCc--eeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGR--FYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR--~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|..+ ++|+.|.++++|.+||+.|||. .|.|++|.|+++.
T Consensus 31 ~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 31 YQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp HHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 568888999999999999874 6788899999999999999964 5999999999985
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=4.9e-09 Score=80.92 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|++|.|+.+ ++++.|.+.++|++||+.||+ .|.|++|.|+++..
T Consensus 32 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 32 ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp HHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred HHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 457778899999999999875 456779999999999999999 99999999999853
No 77
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.80 E-value=3e-09 Score=82.16 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
.+||.+.|++||+|++|.|+.+ ++++.|.+.++|++|++.|||..|.|++|.|+++
T Consensus 54 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 54 DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3678888999999999999865 3566799999999999999999999999999986
No 78
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.80 E-value=7e-09 Score=79.15 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|+.|.|+.+ .+++.|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 41 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp HHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 457778899999999999865 35667999999999999999999999999999974
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.79 E-value=4e-09 Score=77.73 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|..|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 23 ~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 23 KMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp HHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred HHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 457778899999999999863 456779999999999999999999999999999853
No 80
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.79 E-value=6.6e-09 Score=75.94 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|+ .|||..|.|++|.|+++.
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred HHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 457778899999999999866 3566799999999999 999999999999999975
No 81
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=3.2e-09 Score=79.88 Aligned_cols=57 Identities=25% Similarity=0.417 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|++|++.|||..+.|++|.|+++..
T Consensus 15 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred HHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 457778899999999999765 567789999999999999999999999999999853
No 82
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=3.5e-09 Score=79.63 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|..+ .+++.|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 30 EEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp HHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred HHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 457778899999999999975 466779999999999999999999999999999853
No 83
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.79 E-value=6.6e-09 Score=81.86 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCCce--eCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSGRF--YAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNGR~--F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|.. +.+++.|.++++|.+||+.|||.. +.|++|.|+||.-
T Consensus 36 ~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 36 ADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred HHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 45677889999999999984 567888999999999999999975 8999999999864
No 84
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.78 E-value=2.9e-09 Score=79.08 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=48.0
Q ss_pred HHHHHHHHhcC--CeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYG--EIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyG--eI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++|| +|.+|.|+.+ ++++.|.+.++|++|++.|||..|.|++|.|.++.
T Consensus 16 ~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 16 EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp HHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred HHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 45677889999 9999999875 35677999999999999999999999999999874
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.78 E-value=6.4e-09 Score=81.77 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++|++.|||..|.|++|.|+++
T Consensus 78 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 78 KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 578888999999999999765 3567799999999999999999999999999875
No 86
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.78 E-value=6.6e-09 Score=78.51 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCC---eeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAG---RPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~G---R~I~vEfSpV 89 (265)
++|.+.|++||+|+.|.|+.+ ++++.|.+.++|++||+.|||..+.| ++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 30 EDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp HHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence 467778899999999999865 46677999999999999999999998 9999999853
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.77 E-value=5.2e-09 Score=81.00 Aligned_cols=56 Identities=30% Similarity=0.424 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|..|.|+.+ .+++.|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 41 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp HHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 457778899999999999865 46677999999999999999999999999999974
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.77 E-value=1.5e-08 Score=78.99 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|++.|.+||+|.++.|... ++++.|.++++|.+||++|||..+.||+|.|+++.
T Consensus 22 ~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 22 PTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 578889999999999998754 45677999999999999999999999999999983
No 89
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.77 E-value=5.7e-09 Score=82.88 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 30 DFYEDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
...+||.+.|++||+|.+|.|.. .++++.|.+.++|++||..|||..|.|++|.|+++......
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 33467888899999999999984 45678899999999999999999999999999998654443
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.76 E-value=6.2e-09 Score=83.38 Aligned_cols=57 Identities=35% Similarity=0.450 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.++++|++||+.|||..|+|++|.|+++..
T Consensus 61 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 61 RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 467778899999999999864 356779999999999999999999999999999853
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=6.2e-09 Score=82.56 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhC--CceeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LN--GR~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||+|.+|.|+.+ ++|+.|.++++|++||+.|+ |..|.|++|.|+++....
T Consensus 31 ~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 31 GEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 356678899999999999864 57788999999999999986 489999999999986433
No 92
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.76 E-value=1.2e-08 Score=78.37 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC-----CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN-----LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-----~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.++|.+|+..|||..|.|++|.|+++.
T Consensus 23 ~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 23 EEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp HHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 357778899999999999754 46677999999999999999999999999999984
No 93
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.1e-08 Score=80.63 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..+.|..+ .+++.|.+.++|.+|+..|||..++|++|.|.|+.
T Consensus 102 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 102 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 467778899999999999865 35677999999999999999999999999999974
No 94
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.76 E-value=9.9e-09 Score=78.06 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhC------CceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLS------GRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LN------GR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+.+ ++++.|.+.++|.+||..|| |..|+|++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 30 EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp HHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCC
Confidence 457777899999999999854 35677999999999999999 9999999999999853
No 95
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=7.6e-09 Score=79.29 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCee--------EEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIE--------SLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~--------dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||.|. .|.|+.+ ++++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 30 DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred HHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 46777889999999 6888865 356779999999999999999999999999999853
No 96
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.73 E-value=8.4e-09 Score=78.05 Aligned_cols=57 Identities=26% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCcee---CCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFY---AGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F---~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+.+ ++++.|.+.++|.+||+.|||..+ .|++|.|.++..
T Consensus 28 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 28 KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp HHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred HHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 367778899999999999874 356779999999999999999998 999999999853
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=76.73 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|++|.|+.+ ++++.|.++++|++||+ |||..|.|++|.|+++..
T Consensus 25 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 25 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp HHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 356677899999999999764 35677999999999999 999999999999999853
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.73 E-value=1.3e-08 Score=79.24 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 28 FEDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++...+||.+.|++||+|++|.|+.+ ++++.|.+.++|++|| .|||..|.|++|.|+++.
T Consensus 46 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 46 YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34456889999999999999999864 4567799999999999 899999999999999985
No 99
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.72 E-value=4.4e-09 Score=77.95 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..+.|+.+ .+++.|.++++|++||+.|||..|.|++|.|+++.
T Consensus 30 ~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 30 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 467777899999987766542 35677999999999999999999999999999874
No 100
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=9.4e-09 Score=80.18 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCCc--eeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSGR--FYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNGR--~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||+|.+|.|.. +++++.|.++++|.+|++.|++. .+.|++|.|+|+....
T Consensus 30 ~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 30 ADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred HHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 45677889999999999986 45778899999999999999764 5999999999986443
No 101
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.3e-08 Score=78.32 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+...+||.+.|++||+|.+|.|+.+ ++++.|.+.++|++|| .|||..|.|++|.|+++.
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 36 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3344678889999999999999843 4567799999999999 999999999999999974
No 102
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.72 E-value=1.6e-08 Score=80.92 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||+|..|.|..+. +++.|.+.++|.+|++.|||..|+|++|.|+++
T Consensus 109 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 109 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 5678888999999999998763 566799999999999999999999999999986
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.5e-08 Score=78.80 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHh--CCceeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSL--SGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~L--NGR~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||+|.+|.|..+ .+|+.|.++++|.+||+.| ++..+.|++|.|+|+....
T Consensus 30 ~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 30 TEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred HHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 467778899999999999874 5778899999999999987 5788999999999986433
No 104
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=9.1e-09 Score=81.42 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhc-CCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKY-GEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKy-GeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
..+++++|.. +|.+.|++| |+|.+|. -..+++.|.++++|.+|++.|||..+.||+|.|.|++.
T Consensus 19 ~~~~~~~lk~-------~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 19 ANKDGKSVSN-------RLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp TTSCHHHHHH-------HHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred CcCCHHHHHH-------HHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 3456666654 899999999 5999994 37788889999999999999999999999999999864
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.3e-08 Score=82.22 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCC--ceeCCeeEEEEecCCCCc
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSG--RFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNG--R~F~GR~I~vEfSpVtdF 92 (265)
+||.+.|++||+|++|.|+. +++|+.|.++++|.+||+.|++ ..+.|++|.|+|+.....
T Consensus 46 ~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 46 GEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp HHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 46778889999999999986 4678889999999999999984 689999999999865443
No 106
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=8.2e-09 Score=77.83 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHHHh-cCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCce-eCCeeEEEEecC
Q 024601 33 EDLFEELNK-YGEIESLNICDN-------LADHMFREEEQAARALKSLSGRF-YAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsK-yGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~-F~GR~I~vEfSp 88 (265)
+||.+.|++ ||+|.+|.|+.+ ++++.|.+.++|.+|++.|||.. |+|++|.|+++.
T Consensus 24 ~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 24 GMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 356777888 999999999865 46677999999999999999999 999999999984
No 107
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.71 E-value=2.4e-08 Score=82.13 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCeeEEEEecCC----CCceecCHHHHHHHHHHhCCceeCC--eeEEEEecCCCCc----chhhhcccc
Q 024601 33 EDLFEELNKYGEIESLNICDNL----ADHMFREEEQAARALKSLSGRFYAG--RPIIVDFSPVTDF----REATCRQYE 101 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~----g~hlF~~eedA~kAik~LNGR~F~G--R~I~vEfSpVtdF----reA~Cr~~e 101 (265)
++|.+.|++||+|.+|.|.... +++.|.+.++|++|++.|||..|.| ++|.++|+..... ....++.|.
T Consensus 43 ~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n~~~srDyt 121 (130)
T 3zzy_A 43 DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYT 121 (130)
T ss_dssp HHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCCSSSEEETT
T ss_pred HHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEecCCCcccCC
Confidence 3577789999999999998642 6778999999999999999999988 9999999976443 334455553
No 108
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.70 E-value=2e-08 Score=82.59 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|...|++||+|..|.|+.+ ++++.|.+.++|++||..|||..|.|++|.|.++.
T Consensus 87 ~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 87 DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 567888899999999999865 46677999999999999999999999999999974
No 109
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.70 E-value=1.4e-08 Score=84.06 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||.+.|++||+|+.|.|+.+ .+++.|.+.++|.+|+..|||..|+|++|.|.++.
T Consensus 139 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 139 DDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred HHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 4678889999999999999865 35677999999999999999999999999999974
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=76.21 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCee-EEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCee----EEEEecCC
Q 024601 33 EDLFEELNKYGEIE-SLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRP----IIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~-dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~----I~vEfSpV 89 (265)
+||.+.|++||+|+ +|.|+.+. +++.|.+.++|++|++.|||..+.|+. |.|+++..
T Consensus 24 ~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 24 NFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred HHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 35667788999999 99998653 566799999999999999999999999 99998753
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.70 E-value=1.4e-08 Score=81.88 Aligned_cols=57 Identities=23% Similarity=0.423 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|..|.|+.+ ++++.|.+.++|++||+.|||..+.|++|.|+++..
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 567788899999999999875 356779999999999999999999999999999853
No 112
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.69 E-value=2.3e-08 Score=82.93 Aligned_cols=61 Identities=18% Similarity=0.332 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 28 FEDFYEDLFEELNKYG--EIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 28 FdeFyEDV~eEfsKyG--eI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++...+||.+.|++|| +|.+|.|+.+ ++++.|.+.++|++||..|||..|.|++|.|.++.
T Consensus 65 ~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 65 WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 3444578899999999 9999999865 46778999999999999999999999999999984
No 113
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.69 E-value=1.5e-08 Score=81.61 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|.+|.|+.+ ++++.|.+.++|.+|+..|||..+.|++|.|+++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred HHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 467778899999999999865 56778999999999999999999999999999974
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=76.68 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCeeEEEEe----cCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNIC----DNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~----~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|. +.|. ..++++.|.+.++|++|++.|||..|+|++|.|+++..
T Consensus 34 ~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 34 SDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred HHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 46777889999996 5554 34567789999999999999999999999999999853
No 115
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.69 E-value=2.1e-08 Score=81.32 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCC---CCceecCHHHHHHHHHHhCCceeCC--eeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL---ADHMFREEEQAARALKSLSGRFYAG--RPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~---g~hlF~~eedA~kAik~LNGR~F~G--R~I~vEfSpVt 90 (265)
++|.+.|++||+|.+|.|.... +++.|.++++|.+|+++|||..|.| ++|.|+|+...
T Consensus 40 ~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 40 DVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp HHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 4688889999999999997643 5677999999999999999999988 69999998644
No 116
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.69 E-value=7.7e-09 Score=77.77 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=47.4
Q ss_pred HHHHHHHHhcC-CeeEEEEecC--------CCCceecCHHHHHHHHHHhC-CceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYG-EIESLNICDN--------LADHMFREEEQAARALKSLS-GRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyG-eI~dV~V~~N--------~g~hlF~~eedA~kAik~LN-GR~F~GR~I~vEfSp 88 (265)
+||.+.|++|| +|.+|.|+.+ ++++.|.+.++|++|++.|+ +..++|++|.|+++.
T Consensus 16 ~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 16 DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp HHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred HHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 46777889999 8999999764 25677999999999999985 567999999999984
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.69 E-value=1.3e-08 Score=81.89 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
.+||.+.|++||+|+.|.|+.+ .+++.|.+.++|++||+.|||..|.|++|.|+++..
T Consensus 61 e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 61 PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp HHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4678889999999999999865 577889999999999999999999999999999854
No 118
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.2e-08 Score=75.82 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCeeEEEEecC---------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN---------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++|| |.+|.|+.+ ++++.|.++++|++|| .|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 30 ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp HHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred HHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 45777889999 999999855 4566799999999999 9999999999999999854
No 119
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=7e-09 Score=77.42 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCeeEEEEec--------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD--------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||.|..+.|+. .++++.|.++++|++||+.|||..|.|++|.|+++.
T Consensus 30 ~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 30 DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp HHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 46777789999998665553 236677999999999999999999999999999974
No 120
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.67 E-value=8.4e-09 Score=79.25 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCC--eeEEEEecC--------CCCceecCHHHHHHHHHHhCCc----eeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGE--IESLNICDN--------LADHMFREEEQAARALKSLSGR----FYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGe--I~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR----~F~GR~I~vEfSp 88 (265)
++|.+.|++||. |.+|.|+.+ ++++.|.+.++|++|++.|||. .++||+|.|+|+.
T Consensus 24 e~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 24 DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp HHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred HHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 467778899995 679998865 3567799999999999999997 5999999999985
No 121
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.2e-08 Score=79.09 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=58.1
Q ss_pred HHHHHHH-HHHHHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 23 KIQEHFE-DFYEDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 23 elqe~Fd-eFyEDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+-..+|+ +++.+|.+.|+.||+|..+.|..+.+++.|.+.++|.+||+ |||..++||.|.|.+-
T Consensus 28 ~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 28 EEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 3345565 88899999999999999999999999999999999999998 9999999999999873
No 122
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.66 E-value=9.7e-09 Score=73.15 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||+|.+|.|+.+. +++.|.++++|++|++ |||..++|++|.|.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4577788999999999998653 4566999999999998 9999999999999864
No 123
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.66 E-value=2.6e-08 Score=83.99 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++||+.|||..|+|++|.|+++...
T Consensus 103 ~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 103 ADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp HHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 567788899999999999864 4667799999999999999999999999999998654
No 124
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.66 E-value=2.8e-08 Score=84.21 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCeeEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||.|+.|.|+.+ .+++.|.+.++|++||+.|||..++|++|.|.++.
T Consensus 118 ~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 118 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 567888999999999999754 46777999999999999999999999999999873
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.9e-08 Score=74.64 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.++|.+.|++||+|.+|.|... .+++.|.+.++|++|+..|||..|.|++|.|+++.
T Consensus 41 ~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 41 EADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp HHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred HHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4678888999999999999754 46677999999999999999999999999999874
No 126
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.65 E-value=3.6e-08 Score=84.48 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 34 DLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+|++.|++||.|.+|.|..+ .+++.|.+.++|++||+.|||..+.|++|.|.++.
T Consensus 21 ~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 21 RVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 57778899999999999864 57788999999999999999999999999999985
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.2e-08 Score=74.22 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCC-eeEEEEe-cCCCCceecCHHHHHHHHHHhCC-ceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGE-IESLNIC-DNLADHMFREEEQAARALKSLSG-RFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGe-I~dV~V~-~N~g~hlF~~eedA~kAik~LNG-R~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+ |..+.|. ...+++.|.+.++|++|++.||| ..++|++|.|+++..
T Consensus 23 ~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 23 DDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp HHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 456677899999 6655554 45677889999999999999999 999999999999853
No 128
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.65 E-value=3.2e-08 Score=84.43 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC----CCCceecCHHHHHHHHHHhCCceeCC--eeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN----LADHMFREEEQAARALKSLSGRFYAG--RPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N----~g~hlF~~eedA~kAik~LNGR~F~G--R~I~vEfSpVt 90 (265)
++|.+.|++||+|++|.|... ++++.|.++++|++|++.|||..|.| ++|.|+|+...
T Consensus 61 d~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 61 DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 467778899999999999743 46788999999999999999999965 99999998654
No 129
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2.4e-08 Score=76.60 Aligned_cols=56 Identities=20% Similarity=0.420 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCcee--------CCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFY--------AGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F--------~GR~I~vEfSp 88 (265)
++|.+.|++||+|..|.|+.+ ++++.|.+.++|++|+..|||..+ .|++|.|.|+.
T Consensus 40 ~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 40 QELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 467788899999999999875 466779999999999999999999 68889999874
No 130
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.63 E-value=3.5e-08 Score=78.33 Aligned_cols=55 Identities=27% Similarity=0.404 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCC--eeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAG--RPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~G--R~I~vEfS 87 (265)
++|.+.|++||+|..|.|+.+. +++.|.+.++|.+|++.|||..|.| ++|.|.|+
T Consensus 104 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 104 DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5677888999999999998754 5667999999999999999999988 99999885
No 131
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.63 E-value=6.9e-09 Score=76.33 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.+.+ |.+|+..|||..++|++|.|+++...
T Consensus 16 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 16 EQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp HHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred HHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 467778899999999999865 3556799999 99999999999999999999998543
No 132
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.63 E-value=3.5e-08 Score=74.57 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++|| |++|.|+.+ ++++.|.+.++|++|| .|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 30 GDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp HHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 45777889997 999999865 3567799999999999 9999999999999999853
No 133
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=2.1e-08 Score=75.85 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.++++|++||.. ||..|+|++|.|+++.
T Consensus 31 ~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 31 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred HHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 457778899999999999876 356779999999999999 9999999999999874
No 134
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.62 E-value=3.9e-08 Score=72.66 Aligned_cols=59 Identities=19% Similarity=0.345 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF 92 (265)
+||.+.|++| +|.+|.|.. ..+++.|.+.++|++|++.|||..+.|++|.|++++...+
T Consensus 20 ~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 20 QEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp HHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 4577788999 999998864 3566779999999999999999999999999999987554
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.62 E-value=9.9e-08 Score=75.24 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||+|.+|.|+.+. +++.|.++++|.+|++.|||..+.|++|.|.++....
T Consensus 17 ~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 17 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp HHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 3566788999999999998764 5667999999999999999999999999999986443
No 136
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=2.9e-08 Score=76.86 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
++|.+.|++||+|.+|.|+.+ ++++.|.++++|.+||. |||..|+|++|.|.+.
T Consensus 26 ~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 26 DDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp HHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred HHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 456677899999999999864 46677999999999999 9999999999999976
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=1.8e-08 Score=80.59 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhC--CceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLS--GRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LN--GR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|.. +++|+.|.++++|.+||+.|| +..|.||+|.|+++.
T Consensus 41 ~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 41 SAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp HHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 46788899999999999986 457788999999999999986 467999999999984
No 138
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.59 E-value=5.3e-08 Score=87.31 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCCcee------------CCeeEEEEecCCC
Q 024601 31 FYEDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSGRFY------------AGRPIIVDFSPVT 90 (265)
Q Consensus 31 FyEDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNGR~F------------~GR~I~vEfSpVt 90 (265)
..++|...|++||+|++|.|+. +.+||.|.+.++|+.|+++|+|..| .|++|.|.++...
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred cHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 5679999999999999999985 4577889999999999999999999 8999999998543
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.59 E-value=7.5e-08 Score=76.44 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|.+|.|..+ .+++.|.++++|.+|++.|||..+.|++|.|.++...
T Consensus 18 ~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 18 RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 356778899999999999865 3567799999999999999999999999999998643
No 140
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.59 E-value=5.3e-08 Score=79.51 Aligned_cols=57 Identities=16% Similarity=0.308 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||.+.|++||+|..|.|..+. +++.|.+.++|.+|++.|||..|+|++|.|+++.
T Consensus 128 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 128 DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35788889999999999998763 5667999999999999999999999999999974
No 141
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=3.8e-08 Score=74.72 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCC-eeEEEEe-c--------CCCCceecCHHHHHHHHHHhC--CceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGE-IESLNIC-D--------NLADHMFREEEQAARALKSLS--GRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGe-I~dV~V~-~--------N~g~hlF~~eedA~kAik~LN--GR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+ |.+|.|+ . .++++.|.+.++|++|++.|| +..+.|++|.|+++.
T Consensus 23 ~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 23 EEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp HHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 456778899998 9999998 2 235677999999999999996 589999999999985
No 142
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.58 E-value=7.2e-08 Score=70.39 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
++|.+.|++||+|..|.|+.+ .+++.|.+.++|++|++ +++..++|++|.|.++
T Consensus 26 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 26 KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred HHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 456777899999999999865 35667999999999995 5888999999999874
No 143
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.58 E-value=8e-08 Score=83.57 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeC-CeeEEEEecC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYA-GRPIIVDFSP 88 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~-GR~I~vEfSp 88 (265)
+...++|++.|++||.|++|.|..+ .+++.|.+.++|.+|++.|||..|. |++|.|+|+.
T Consensus 218 ~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 218 ETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3345789999999999999999864 4677799999999999999999999 9999999974
No 144
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=4.4e-08 Score=75.53 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 30 DFYEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
...++|.+.|++||+|+.|.|+.+ ++++.|.+.++|++||.. ||..|+|++|.|+++.
T Consensus 39 ~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 39 TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 344678889999999999999875 356779999999999999 9999999999999974
No 145
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.58 E-value=7.3e-08 Score=76.01 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCee--EEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRP--IIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~--I~vEfS 87 (265)
++|.+.|++||+|..+.|..+. +++.|.+.++|.+|++.|||..|.|+. |.|.|+
T Consensus 103 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 5688889999999999998653 566799999999999999999999975 887764
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.57 E-value=2.3e-08 Score=71.20 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||+|.+|.|+.+. +++.|.+.++|++|++.|+ ..++|++|.|+++
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 3567788999999999998753 4566999999999999999 9999999999875
No 147
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.3e-07 Score=74.48 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+. +++.|.++++|.+|+..|||..+.|++|.+.++.
T Consensus 15 ~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 15 DILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp HHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 4677788999999999998554 5667999999999999999999999999999974
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4.9e-08 Score=72.79 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||+|.+|.+... ++++.|.++++|.+||. |||..|+|++|.|+++...
T Consensus 23 ~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 23 AQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp HHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred HHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 467778899999999844333 46778999999999999 9999999999999987543
No 149
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=8.4e-08 Score=70.77 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++| .|.+|.|+.+ .+++.|.+.++|++|++ |||..|+|++|.|.++..
T Consensus 25 ~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 25 KNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp HHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred HHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 4577788999 9999999876 35667999999999999 999999999999999853
No 150
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.55 E-value=3.8e-08 Score=86.12 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhcC--CeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 28 FEDFYEDLFEELNKYG--EIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 28 FdeFyEDV~eEfsKyG--eI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
|+...+||.+.|++|| +|++|.|+.+ ++||.|.+.++|++||+.|||..|.|++|.|.++.
T Consensus 78 ~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 78 WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 3444578999999999 9999999876 36788999999999999999999999999999974
No 151
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.55 E-value=1.1e-07 Score=73.35 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||.+.|++||+|++|.|+.+ ++++.|.+.++|.+||..|+ ..|+|++|.|+++.
T Consensus 39 e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 39 QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 102 (109)
T ss_dssp HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECC
T ss_pred HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEcc
Confidence 3568888999999999999865 45677999999999999985 99999999999974
No 152
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.55 E-value=3.1e-08 Score=74.97 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC---------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN---------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++|| |.+|.|..+ ++++.|.+.++|.+|+ .|||..|+|++|.|+++.
T Consensus 34 ~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 34 ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp SHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred HHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 46777889999 999999764 3556799999999999 999999999999999975
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.53 E-value=9.3e-08 Score=76.15 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeC---CeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYA---GRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~---GR~I~vEfS 87 (265)
++|.+.|++||+|..|.|+.+ .+++.|.+.++|.+|++.|||..+. |++|.|.|+
T Consensus 110 ~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 110 NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 567788999999999999876 3566799999999999999998776 499999986
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.93 E-value=1.1e-08 Score=79.16 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCeeE--------EEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 30 DFYEDLFEELNKYGEIES--------LNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 30 eFyEDV~eEfsKyGeI~d--------V~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
...+||.+.|++||+|.. |.|+.+ ++++.|.+.++|++||..|||..|.|++|.|+++.
T Consensus 19 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 19 VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 344678889999999998 777754 47788999999999999999999999999999974
No 155
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=9.4e-08 Score=74.57 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCeeEEEEec---CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICD---NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~---N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+. .++++.|.+.++|++||+.+++ +.|++|.|+++..
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred HHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 46777889999999999973 4577889999999999999776 7899999999753
No 156
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.2e-08 Score=74.30 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||+|..|.|+.+ ++++.|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 20 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 20 QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp HHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456778899999999999865 3566799999999999999999999999987653
No 157
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=6e-08 Score=74.29 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCe----eEEEEec----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEI----ESLNICD----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI----~dV~V~~----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||.| ..+.+.. .++++.|.+.++|++||..|||..|.|++|.|+++...
T Consensus 40 ~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 40 RDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp HHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence 4677788899998 5666553 34677799999999999999999999999999998543
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.50 E-value=7.5e-08 Score=76.54 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
.+||.+.|++||+|..|.|..+ .+++.|.+.++|.+|++ |+|..|+|++|.|.++.
T Consensus 101 ~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 101 PKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred HHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 3578888999999999999865 35567999999999998 99999999999999974
No 159
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=2.1e-07 Score=70.08 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|+.|.|+.+ ++++.|.+.++|++||. ++..++|++|.|+++.
T Consensus 30 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 30 QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp HHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 457778899999999999875 36677999999999999 4789999999999974
No 160
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.49 E-value=1.4e-07 Score=80.73 Aligned_cols=57 Identities=28% Similarity=0.409 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|++.|++||+|.+|.|+.+ .+++.|.++++|++|++.|||..|.|++|.|+++..
T Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 50 QSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred HHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 467778899999999999954 477889999999999999999999999999999853
No 161
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.49 E-value=9.9e-08 Score=78.67 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=50.1
Q ss_pred HHHHHHHHhcC-CeeEEEEec---CCCCceecCHHHHHHHHHHhCCceeC-CeeEEEEecC
Q 024601 33 EDLFEELNKYG-EIESLNICD---NLADHMFREEEQAARALKSLSGRFYA-GRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyG-eI~dV~V~~---N~g~hlF~~eedA~kAik~LNGR~F~-GR~I~vEfSp 88 (265)
++|.+.|++|| +|..|.|.. ..+++.|.+.++|.+|+..|||..++ |++|.|.|+.
T Consensus 135 ~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 135 EDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp HHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred HHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 57888999999 999999954 45667799999999999999999999 9999999974
No 162
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=6.5e-08 Score=72.67 Aligned_cols=54 Identities=31% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+| .|+.+ ++++.|.+.++|++||..|||..|.|++|.|+++..
T Consensus 30 ~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 30 ETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp HHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred HHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3566678889988 33332 456779999999999999999999999999999843
No 163
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.48 E-value=1.3e-07 Score=77.99 Aligned_cols=57 Identities=28% Similarity=0.409 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC---CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN---LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N---~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|.+.|++||+|.+|.|+.+ .+++.|.++++|.+|+..|||..+.|++|.|+++..
T Consensus 19 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 19 QSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 457778899999999999854 577889999999999999999999999999999853
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.47 E-value=3.9e-08 Score=77.13 Aligned_cols=57 Identities=23% Similarity=0.071 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCC---eeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGE---IESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGe---I~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
+||.+.|++||. |..|.|+.+ ++++.|.++++|++||+ |||..++||+|.|.++...
T Consensus 32 ~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 32 EDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp HHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred HHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 567788899999 899998854 45677999999999999 9999999999999987533
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.47 E-value=2.1e-07 Score=67.61 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=43.6
Q ss_pred HHHHHHHhc----C-------CeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 34 DLFEELNKY----G-------EIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 34 DV~eEfsKy----G-------eI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
||.+.|++| | +|.++.|..+ .+++.|.++++|.+|+ .|||..|.|++|.|+
T Consensus 22 ~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 22 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp HHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred HHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 455556666 8 9999999864 5667799999999999 999999999999986
No 166
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.46 E-value=2.1e-07 Score=79.68 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=50.3
Q ss_pred HHHHHHHHhcC-CeeEEEEec---CCCCceecCHHHHHHHHHHhCCceeC-CeeEEEEecC
Q 024601 33 EDLFEELNKYG-EIESLNICD---NLADHMFREEEQAARALKSLSGRFYA-GRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyG-eI~dV~V~~---N~g~hlF~~eedA~kAik~LNGR~F~-GR~I~vEfSp 88 (265)
++|.+.|++|| +|..|.|.. ..+++.|.+.++|.+|+..|||..|+ |++|.|.|+.
T Consensus 166 ~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 166 EDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp HHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred HHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 67888999999 999999943 45677799999999999999999999 9999999975
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.46 E-value=1.5e-07 Score=81.86 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCc
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 92 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdF 92 (265)
+||.+.|++||.|..|.|..+ .+++.|.+.++|.+|+..|||..|+|++|.|.|+....-
T Consensus 200 ~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 200 DALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 578888999999999999875 356679999999999999999999999999999865443
No 168
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.45 E-value=7.3e-08 Score=71.58 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCeeEEEE---ecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNI---CDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V---~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..+.. ....+++.|.+.++|.+|+..|||..+.|++|.|+++.
T Consensus 31 ~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 31 DELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp HHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred HHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 456677788999887711 12357788999999999999999999999999999984
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.45 E-value=2.7e-07 Score=80.25 Aligned_cols=65 Identities=18% Similarity=0.451 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
..+++++|.. .|++.|++||+|++|.|+. .++++.|.+.++|.+||+.|||..|.|++|.|+++.
T Consensus 19 ~~~~~~~l~~-------~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 19 EKIKKDELKK-------SLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCCCHHHHHH-------HHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 3466666653 4677899999999999986 357778999999999999999999999999999984
No 170
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.44 E-value=3.4e-07 Score=77.49 Aligned_cols=58 Identities=26% Similarity=0.477 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
++|.+.|++||+|++|.|+.+. +++.|.++++|.+||+.|||..+.|++|.+.++...
T Consensus 30 ~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 30 AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 4567788999999999998753 567799999999999999999999999999987543
No 171
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.43 E-value=2.5e-07 Score=80.81 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCC---------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL---------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~---------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|..|.|+.+. +++.|.+.++|.+|+ .|||.+|+|++|.|.|+.
T Consensus 226 ~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 5788889999999999998653 456799999999999 999999999999999974
No 172
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=1.4e-07 Score=73.11 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCe-eEEEEec-------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEI-ESLNICD-------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI-~dV~V~~-------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||.| ..|.|+. .++++.|.++++|++||+. ||..|.|++|.|.++.
T Consensus 30 ~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 30 MDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp HHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred HHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 4677788999999 8888864 3567789999999999998 9999999999999985
No 173
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=1.3e-07 Score=72.10 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCeeE-EEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 33 EDLFEELNKYGEIES-LNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 33 EDV~eEfsKyGeI~d-V~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
+||.+.|++||.|.+ |.|+.+ ++++.|.++++|++||.. ||..++||.|.|.++....+.
T Consensus 30 ~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 30 EEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp HHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSC
T ss_pred HHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHH
Confidence 578888999999998 877654 356779999999999998 999999999999988655543
No 174
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.42 E-value=1.9e-07 Score=74.54 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCeeE--------EEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 32 YEDLFEELNKYGEIES--------LNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 32 yEDV~eEfsKyGeI~d--------V~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
.++|...|++||.|.. |.+.. .++++.|.+.++|.+||..|||..|.|++|.|+++..
T Consensus 59 e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 59 EKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp HHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred HHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3577888999999876 43332 3577889999999999999999999999999999853
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.42 E-value=2.4e-07 Score=76.54 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 32 YEDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
.++|.+.|++||+|.+|.|+.+ .+++.|.++++|.+|++.|||..|.|++|.|.++....
T Consensus 42 ~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 42 EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 4678888999999999999754 35677999999999999999999999999998875443
No 176
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.42 E-value=8.8e-08 Score=67.93 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.++++|.+|++. +|..+.|++|.|.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 456677789999999999754 456679999999999995 999999999999874
No 177
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.39 E-value=6e-08 Score=79.30 Aligned_cols=62 Identities=21% Similarity=0.022 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhcCC---eeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCC
Q 024601 28 FEDFYEDLFEELNKYGE---IESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 90 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGe---I~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVt 90 (265)
|+...+||.+.|++||. |.+|.|+.+ ++++.|.++++|++||+ |||..++||+|.|.++...
T Consensus 54 ~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 54 WSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp TTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred CCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 34445688889999999 889998854 46677999999999999 9999999999999987543
No 178
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=5.3e-08 Score=76.38 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCeeE-EEEec-------CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIES-LNICD-------NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~d-V~V~~-------N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||.|.+ +.|.. .++++.|.++++|.+||. |||..|+|++|.|.++....
T Consensus 40 ~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 40 KHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp HHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred HHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 577888899999987 44442 246778999999999999 99999999999999986433
No 179
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=1.9e-07 Score=73.41 Aligned_cols=63 Identities=10% Similarity=0.110 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
+...+||.+.|++| .|++|.|+.+ ++++.|.++++|++|| .|||..++||.|.|..+....|.
T Consensus 27 ~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~ 96 (109)
T 2dnn_A 27 SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWV 96 (109)
T ss_dssp SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHH
T ss_pred CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchh
Confidence 34446788888999 8999999854 3567799999999999 79999999999999887544443
No 180
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.37 E-value=8e-08 Score=76.19 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCeeE--EEEecC--------CCCceecCHHHHHHHHHHhCCc----eeCCeeEEEEecCC
Q 024601 32 YEDLFEELNKYGEIES--LNICDN--------LADHMFREEEQAARALKSLSGR----FYAGRPIIVDFSPV 89 (265)
Q Consensus 32 yEDV~eEfsKyGeI~d--V~V~~N--------~g~hlF~~eedA~kAik~LNGR----~F~GR~I~vEfSpV 89 (265)
.+||.+.|++||+|.. |.|+.+ ++|+.|.+. +|.+||..|||. .++|++|.|+++..
T Consensus 37 e~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 37 MDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp SHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred HHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 3577888999999966 888764 366779999 999999999999 99999999999853
No 181
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.37 E-value=5.2e-07 Score=73.44 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|+.|.|+.+. +++.|.+.++|.+|+.. +|..|+|++|.|.++.
T Consensus 119 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 5688888999999999998653 56779999999999987 7999999999999974
No 182
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=3.1e-07 Score=68.87 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCeeEEEEec-----CCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 34 DLFEELNKYGEIESLNICD-----NLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 34 DV~eEfsKyGeI~dV~V~~-----N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
||.+.|++|+.|.-+.... .++++.|.+.++|++||+.|||..|.|++|.|+++.
T Consensus 31 ~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 31 TLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp HHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4445556665443322211 246777999999999999999999999999999985
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.33 E-value=8.6e-08 Score=71.99 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCeeEEEEe-------cCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNIC-------DNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~-------~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..+.|. +.++++.|.+.++|++||+ |||..|.|++|.|+++.
T Consensus 32 ~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 32 AELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred HHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4566677788877662222 2356778999999999999 99999999999999985
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.33 E-value=2.8e-07 Score=74.10 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCeeEEEEe----cCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNIC----DNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~----~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..+ .. ...+++.|.+.++|.+|+..|||.+|+|++|.|+|+.
T Consensus 114 ~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 114 DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred HHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 4677788889999877 21 1235677999999999999999999999999999984
No 185
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.1e-07 Score=73.15 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++|| |++|.|+.+ ++++.|.++++|++|| .||+..++||.|.|.++..
T Consensus 30 ~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 30 NDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp HHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred HHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 56778889999 459998865 3567799999999999 5899999999999988753
No 186
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.28 E-value=1.1e-07 Score=77.99 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
+...+||.+.|++|| |++|.|+.+ ++++.|.++++|++|| .||+..++||.|.|.++....
T Consensus 57 ~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 57 KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 334467888999999 779999854 5778899999999999 899999999999999876543
No 187
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.28 E-value=1.1e-06 Score=71.59 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.++++|.+|++. +|..+.|++|.|.++..
T Consensus 28 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred HHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 457778899999999999865 456779999999999977 99999999999999753
No 188
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.26 E-value=1.6e-07 Score=71.99 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCC---eeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGE---IESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGe---I~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
+||.+.|++||. |..|.|+.+ ++++.|.+.++|++||. |||..++||.|.|.++..
T Consensus 26 ~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 26 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred HHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 456667788887 999999865 35677999999999999 999999999999988753
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.22 E-value=2.2e-06 Score=74.52 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|.+.|++||+|..+.|+.+. +++.|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 110 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 110 QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4677788999999999987643 56679999999999999999999999999999853
No 190
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.20 E-value=5.4e-07 Score=67.69 Aligned_cols=54 Identities=11% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
++|.+.|++||+|..|.|+.+ .+++.|.+.++|++|+. +|..++|++|.|.++.
T Consensus 24 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 24 TEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 456778899999999999864 45677999999999999 9999999999988863
No 191
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.19 E-value=1.5e-06 Score=81.61 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCeeEEEEec--CCCCceecCHHHHHHHHHHhCCcee---CCe--eEEEEecCCCCcchhhhccccccC
Q 024601 32 YEDLFEELNKYGEIESLNICD--NLADHMFREEEQAARALKSLSGRFY---AGR--PIIVDFSPVTDFREATCRQYEENT 104 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~--N~g~hlF~~eedA~kAik~LNGR~F---~GR--~I~vEfSpVtdFreA~Cr~~e~g~ 104 (265)
.+||.+.|++||+|.+|.|.. .++|+.|.+.++|++||++|||..+ .|+ +|++.|+.... |..+....
T Consensus 34 e~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~-----~~~~~~~~ 108 (345)
T 3tht_A 34 RNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ-----WKELRPQA 108 (345)
T ss_dssp HHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEE-----EEEEECCS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeeccc-----cccccccc
Confidence 457788899999999999865 4567889999999999999999998 355 67888763211 22233345
Q ss_pred CCCCCccccCccccCCHHHHHHhhhcc
Q 024601 105 CNRGGYCNFMHLKRISRDLRRQLFGRY 131 (265)
Q Consensus 105 C~RGg~CNFmH~~~~sr~L~r~L~~~~ 131 (265)
.+.| -+++.--++.+-...|....
T Consensus 109 lp~G---l~~~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 109 LPPG---LMVVEEIISSEEEKMLLESV 132 (345)
T ss_dssp CCTT---EEEETTCSCHHHHHHHHTTC
T ss_pred CCCc---eEEEcCcCCHHHHHHHHHhc
Confidence 5555 34444456777677776654
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.17 E-value=2.9e-06 Score=74.02 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--CCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|..+. +++.|.+.++|.+|+..|||..+.|++|.|.++.
T Consensus 37 ~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 37 EDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 5677889999999999998654 5677999999999999999999999999999875
No 193
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.14 E-value=2.2e-06 Score=72.93 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 29 EDFYEDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 29 deFyEDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
+...++|.+.|++||+|..|.|+.+ .+++.|.++++|.+|+..++. .|+|++|.|.+.
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEET
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEh
Confidence 3445789999999999999999863 466779999999999988765 999999999875
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=2.6e-07 Score=74.31 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCCe----eEEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCCcc
Q 024601 28 FEDFYEDLFEELNKYGEI----ESLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 93 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI----~dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtdFr 93 (265)
|+...+||.+.|++||+| .+|.|+.+ ++++.|.++++|++||+. |+..++||.|.|..+....+.
T Consensus 33 ~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~ 108 (123)
T 2dha_A 33 FTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQ 108 (123)
T ss_dssp TTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHH
T ss_pred CCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHH
Confidence 344456788899999986 68888754 356779999999999996 999999999999887544433
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.13 E-value=2.6e-06 Score=74.31 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHHHHhcC-CeeEEEEecCC-------CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYG-EIESLNICDNL-------ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyG-eI~dV~V~~N~-------g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|.+.|++|| +|..|.|+.+. +++.|.+.++|.+|+..|||..+.|++|.|.++..
T Consensus 132 ~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 132 RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp HHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 45777889999 99999997643 66779999999999999999999999999999753
No 196
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.3e-06 Score=66.19 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCeeEEEEecC-----------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 33 EDLFEELNKYGEIESLNICDN-----------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-----------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
+||.+.|++||+|. +.++.+ ++++.|.++++|++||+.|++ ++|+.|.+..++...
T Consensus 23 ~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~~~ 89 (114)
T 2dnl_A 23 DEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSPTIK 89 (114)
T ss_dssp HHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCSSSC
T ss_pred HHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCCCcC
Confidence 45677889999999 666532 356679999999999999964 888888888776443
No 197
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.08 E-value=3.8e-06 Score=66.70 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC----------CCCceecCHHHHHHHHHHhCCceeC---CeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN----------LADHMFREEEQAARALKSLSGRFYA---GRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N----------~g~hlF~~eedA~kAik~LNGR~F~---GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+.+ .+++.|.++++|++|++.|||..+. +++|.+..+.
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 18 KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp HHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred HHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 456777899999999999854 3556799999999999999998776 6788877754
No 198
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.06 E-value=4.4e-06 Score=62.44 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCeeEEEEec---CCCCceecCHHHHHHHHHHhCCceeC--CeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD---NLADHMFREEEQAARALKSLSGRFYA--GRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~---N~g~hlF~~eedA~kAik~LNGR~F~--GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+. .++++.|.++++|+ .|+|..+. |++|.|.++.
T Consensus 26 ~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 26 EELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp HHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC
T ss_pred HHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcC
Confidence 46777889999999999985 46788899999988 36777654 9999998874
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.05 E-value=3.7e-06 Score=73.33 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCeeEEEEecC-------CCCceecCHHHHHHHHHHh-CCceeC---CeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDN-------LADHMFREEEQAARALKSL-SGRFYA---GRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N-------~g~hlF~~eedA~kAik~L-NGR~F~---GR~I~vEfSp 88 (265)
++|.+.|++||+|..|.|+.+ .+++.|.+.++|.+|+..| +|.++. |++|.|+++.
T Consensus 111 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 111 ELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred HHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 467788899999999999755 3567799999999999999 566666 9999999875
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.97 E-value=6.6e-06 Score=70.36 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCe--eEEEEecC------CCCceecCHHHHHHHHHHhCCceeCCe----eEEEEec
Q 024601 32 YEDLFEELNKYGEI--ESLNICDN------LADHMFREEEQAARALKSLSGRFYAGR----PIIVDFS 87 (265)
Q Consensus 32 yEDV~eEfsKyGeI--~dV~V~~N------~g~hlF~~eedA~kAik~LNGR~F~GR----~I~vEfS 87 (265)
.+||.+.|++||.| ..|.|..+ .+++.|.+.++|.+||..|||..+.|+ |++|-|+
T Consensus 137 ~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 137 EENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 46788899999999 89998764 356779999999999999999999998 5666554
No 201
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=5.4e-06 Score=60.71 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCeeEEEEec---CCCCceecCHHHHHHHHHHhCCcee--CCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICD---NLADHMFREEEQAARALKSLSGRFY--AGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~---N~g~hlF~~eedA~kAik~LNGR~F--~GR~I~vEfSp 88 (265)
+||.+.|++||+|.+|.|+. .++++.|.+.++|++ |++..+ .|++|.|.++.
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAE 76 (88)
T ss_dssp HHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCC
T ss_pred HHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecC
Confidence 45777889999999999985 468888999999975 455544 99999999874
No 202
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.92 E-value=8.4e-06 Score=64.61 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeeEEEEecC--------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDN--------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N--------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
++|.+.|++||+|.+|.|+.+ .+++.|.++++|.+|++. +..++|++|.+.++..
T Consensus 18 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 18 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp HHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred HHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 356677899999999999865 356779999999999995 6799999999988753
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.91 E-value=2.8e-05 Score=61.79 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=44.9
Q ss_pred HHHHHHHhc----C-------CeeEEEEecCC--CCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 34 DLFEELNKY----G-------EIESLNICDNL--ADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 34 DV~eEfsKy----G-------eI~dV~V~~N~--g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
||.+.|++| | .|.++.+..+. +++.|.++++|.+|+ .|||..+.|++|.|.++..
T Consensus 20 ~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 20 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp HHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred HHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 344455666 7 88999887654 567799999999999 9999999999999998643
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.89 E-value=9.7e-06 Score=67.74 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--------CCceecC----HHH----HHHHHH--HhCCceeCCeeEEEEecCC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--------ADHMFRE----EEQ----AARALK--SLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--------g~hlF~~----eed----A~kAik--~LNGR~F~GR~I~vEfSpV 89 (265)
.+|...|++||+|.++.|..+. +++.|.+ +++ |.+||. .|||..++|++|.|+|-+-
T Consensus 21 ~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 3577788999999999998764 4455985 333 899999 8999999999999998753
No 205
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.87 E-value=3.1e-06 Score=68.00 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcC-CeeEEEEe--cCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEecCC
Q 024601 18 PLDPRKIQEHFEDFYEDLFEELNKYG-EIESLNIC--DNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 18 ~~d~eelqe~FdeFyEDV~eEfsKyG-eI~dV~V~--~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSpV 89 (265)
.+++++|.+.|..|.. .+| .|.+.... +..+++.|.++++|.+|+ .|||..+.|++|.|.++..
T Consensus 24 ~~t~~~l~~~f~~~g~-------~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 24 NKSVAELKVAISELFA-------KNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp TSCHHHHHHHHHHHHH-------HHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred CCCHHHHHHHHHHhCC-------cceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 3566666654443322 122 33443332 245678899999999999 5999999999999999854
No 206
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.86 E-value=2e-06 Score=69.66 Aligned_cols=59 Identities=24% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCee--EEEEecC-------CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 28 FEDFYEDLFEELNKYGEIE--SLNICDN-------LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 28 FdeFyEDV~eEfsKyGeI~--dV~V~~N-------~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
|+...+||.+.|++| .|+ +|.|+.+ ++++.|.++++|++||+. ++..++||+|.|..+.
T Consensus 52 ~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 52 FGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp TTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred CCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 334446788899999 677 8998854 356779999999999985 7799999999998774
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.81 E-value=3.1e-05 Score=62.91 Aligned_cols=54 Identities=17% Similarity=0.384 Sum_probs=44.4
Q ss_pred HHHHHHHhc----C-------CeeEEEEecC--CCCceecCHHHHHHHHHHhCCceeCCeeEEEEecC
Q 024601 34 DLFEELNKY----G-------EIESLNICDN--LADHMFREEEQAARALKSLSGRFYAGRPIIVDFSP 88 (265)
Q Consensus 34 DV~eEfsKy----G-------eI~dV~V~~N--~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfSp 88 (265)
||.+.|++| | .|.++.+... .+++.|.++++|.+|+ .|||..|.|++|.|.++.
T Consensus 20 ~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 20 AMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp HHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred HHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence 445556666 5 7888888754 4667799999999999 999999999999999874
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=6.5e-05 Score=61.11 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCeeEEEEecCC--CCceecC-HHHHHHHHHHh--CCceeCCeeEEEEecC
Q 024601 33 EDLFEELNKYGEIESLNICDNL--ADHMFRE-EEQAARALKSL--SGRFYAGRPIIVDFSP 88 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~--g~hlF~~-eedA~kAik~L--NGR~F~GR~I~vEfSp 88 (265)
+||.+.|++||+|..|.|..+. +++.|.+ +.+|+.|+.+| +|..+.|..|.+++..
T Consensus 34 edLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 34 EDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 5788899999999999998764 6777999 89999999999 4889999999998763
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0023 Score=52.21 Aligned_cols=59 Identities=22% Similarity=0.395 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc-----CCeeEEEEecCCCCc--eecCHHHHHHHHHHhCCceeCCeeEEEE
Q 024601 16 GNPLDPRKIQEHFEDFYEDLFEELNKY-----GEIESLNICDNLADH--MFREEEQAARALKSLSGRFYAGRPIIVD 85 (265)
Q Consensus 16 ~~~~d~eelqe~FdeFyEDV~eEfsKy-----GeI~dV~V~~N~g~h--lF~~eedA~kAik~LNGR~F~GR~I~vE 85 (265)
...+++..|.. .++.| |.|+.|++..+.+.. .|.++..|.+|.-+|+|..|+||+|.|-
T Consensus 30 pDtvndarIr~-----------lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 30 SDKVSPSLICQ-----------FLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp CTTCCHHHHHH-----------HHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCCCCHHHHHH-----------HHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 44567766543 45666 999999998877654 4999999999999999999999999984
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.01 E-value=0.0099 Score=47.49 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCCce--ecCHHHHHHHHHHhCCceeCCeeEEEEecCCCC
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM--FREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 91 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~hl--F~~eedA~kAik~LNGR~F~GR~I~vEfSpVtd 91 (265)
..|.+.++++ .+...|..|+++..+.....+--+. |.++++|.+|-..|++..|.|..|.|-|...++
T Consensus 16 ~vF~~~~lk~-------~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 16 DVFSESETRA-------KFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp GGGSTTTHHH-------HHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHcCCHHHHH-------HHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 3456667765 4556679999999998888876554 999999999999999999999999999987443
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.89 E-value=0.011 Score=48.08 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCC-ce-ecCHHHHHHHHHHhCCceeCCee
Q 024601 33 EDLFEELNKYGEIESLNICDNLAD-HM-FREEEQAARALKSLSGRFYAGRP 81 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~-hl-F~~eedA~kAik~LNGR~F~GR~ 81 (265)
..|..+|++||+|++.....+.+- |+ |.+..+|++|+.. ||..++|..
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~ 87 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESI 87 (119)
T ss_dssp HHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTE
T ss_pred HHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCE
Confidence 469999999999999988554433 33 9999999999986 999998643
No 212
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.69 E-value=0.087 Score=38.93 Aligned_cols=30 Identities=20% Similarity=0.690 Sum_probs=25.2
Q ss_pred CCcchhhhccccccCCCCCCccccCccccC
Q 024601 90 TDFREATCRQYEENTCNRGGYCNFMHLKRI 119 (265)
Q Consensus 90 tdFreA~Cr~~e~g~C~RGg~CNFmH~~~~ 119 (265)
...+..+|+-|..|.|.+|..|.|+|-..+
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 345678899999999999999999998654
No 213
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=90.44 E-value=0.13 Score=37.22 Aligned_cols=33 Identities=27% Similarity=0.626 Sum_probs=27.8
Q ss_pred CCCCcchhhhccc-cccCCCCCCccccCccccCC
Q 024601 88 PVTDFREATCRQY-EENTCNRGGYCNFMHLKRIS 120 (265)
Q Consensus 88 pVtdFreA~Cr~~-e~g~C~RGg~CNFmH~~~~s 120 (265)
+...|+..+|+.| ..|.|..|..|.|.|....-
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~ 39 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL 39 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhh
Confidence 4567888999998 48999999999999987543
No 214
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=90.16 E-value=0.072 Score=38.78 Aligned_cols=25 Identities=40% Similarity=0.933 Sum_probs=21.3
Q ss_pred hhhhccccccCCCCCC-ccccCcccc
Q 024601 94 EATCRQYEENTCNRGG-YCNFMHLKR 118 (265)
Q Consensus 94 eA~Cr~~e~g~C~RGg-~CNFmH~~~ 118 (265)
.++|+.|..|.|.+|. .|.|.|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 4679999999999999 599999653
No 215
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=88.71 E-value=0.15 Score=37.47 Aligned_cols=32 Identities=19% Similarity=0.652 Sum_probs=25.6
Q ss_pred CCCCcchhhhccccccCCCCCCccccCccccC
Q 024601 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRI 119 (265)
Q Consensus 88 pVtdFreA~Cr~~e~g~C~RGg~CNFmH~~~~ 119 (265)
.....+..+|+-|..|.|.+|..|.|.|-..+
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 34556678899898899999999999998543
No 216
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=88.68 E-value=0.16 Score=38.55 Aligned_cols=26 Identities=31% Similarity=0.807 Sum_probs=22.3
Q ss_pred chhhhccccccCCCCCC-ccccCcccc
Q 024601 93 REATCRQYEENTCNRGG-YCNFMHLKR 118 (265)
Q Consensus 93 reA~Cr~~e~g~C~RGg-~CNFmH~~~ 118 (265)
+.++|+.|..|.|.||. .|.|.|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 55789999999999995 999999864
No 217
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=88.48 E-value=0.13 Score=37.32 Aligned_cols=28 Identities=25% Similarity=0.637 Sum_probs=24.1
Q ss_pred CCcchhhhccccccCCCCCCccccCcccc
Q 024601 90 TDFREATCRQYEENTCNRGGYCNFMHLKR 118 (265)
Q Consensus 90 tdFreA~Cr~~e~g~C~RGg~CNFmH~~~ 118 (265)
..-+..+|..|..|.|.+| .|.|+|+.+
T Consensus 38 ~~~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 38 NDNTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TTTEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred cCCcceeccccCcCCCCCC-CcCeeCCHH
Confidence 4556788999999999999 999999754
No 218
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.05 E-value=0.19 Score=39.19 Aligned_cols=35 Identities=23% Similarity=0.550 Sum_probs=27.3
Q ss_pred CCcchhhhccccccCCCCCCccccCccccCCHHHHHHhh
Q 024601 90 TDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128 (265)
Q Consensus 90 tdFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~r~L~ 128 (265)
..-+..+|..|..|.|.++ .|.|+|+.. .|+..|-
T Consensus 52 ~~~~~~vC~~flkG~C~r~-~C~y~H~~~---~l~~~~~ 86 (98)
T 2e5s_A 52 SDNTVTVCMDYIKGRCMRE-KCKYFHPPA---HLQAKIK 86 (98)
T ss_dssp TTCEEEBCHHHHHTCCCCT-TCCSBCCCH---HHHHHHH
T ss_pred cCCccccchhhccCCCCCC-CcCccCChH---HHHHHHH
Confidence 4567788999999999999 999999754 5665553
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.70 E-value=0.38 Score=39.85 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCeeE-EEEec-------------C-C---CC----ceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 34 DLFEELNKYGEIES-LNICD-------------N-L---AD----HMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 34 DV~eEfsKyGeI~d-V~V~~-------------N-~---g~----hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
-|..+|++||.|.+ +.+.+ . + +. +.|.+..+|.+|+. -||..|+|-.|-|..+
T Consensus 22 ~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 22 QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEEC
Confidence 58899999999976 32221 0 0 12 23999999999996 6999999987777654
No 220
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=86.61 E-value=0.17 Score=38.96 Aligned_cols=27 Identities=33% Similarity=0.784 Sum_probs=23.6
Q ss_pred chhhhccccccCCCCCC-ccccCccccC
Q 024601 93 REATCRQYEENTCNRGG-YCNFMHLKRI 119 (265)
Q Consensus 93 reA~Cr~~e~g~C~RGg-~CNFmH~~~~ 119 (265)
+.++|+.|..|.|.||. .|.|.|....
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 46899999999999997 9999998654
No 221
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.28 E-value=0.23 Score=36.98 Aligned_cols=33 Identities=33% Similarity=0.785 Sum_probs=26.0
Q ss_pred CCCCcchhhhccccccCCCCCCccccCccccCCHHHHH
Q 024601 88 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 125 (265)
Q Consensus 88 pVtdFreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~r 125 (265)
|...| .+|..|..|.|+.|..|.|-|=. .+|+.
T Consensus 16 P~~k~--~LC~~~~~G~C~~G~~C~FAHG~---~ELr~ 48 (69)
T 2d9m_A 16 PTGYF--SICDRYMNGTCPEGNSCKFAHGN---AELHE 48 (69)
T ss_dssp CCSCC--SBCHHHHHSCCSSCSSCSSBSSH---HHHHH
T ss_pred CCCCc--ccCcccCcCCCCCCCccCCcCCH---HHHhh
Confidence 33445 78999999999999999999976 44544
No 222
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=84.50 E-value=0.39 Score=37.19 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=12.3
Q ss_pred chhhhccccccCCCCCCccccCcc
Q 024601 93 REATCRQYEENTCNRGGYCNFMHL 116 (265)
Q Consensus 93 reA~Cr~~e~g~C~RGg~CNFmH~ 116 (265)
+..+|+-|..|.|.+|..|.|+|.
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCccCcccccCcCCCCCCCCCCCC
Confidence 334455555555555555555554
No 223
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.84 E-value=0.13 Score=40.16 Aligned_cols=27 Identities=30% Similarity=0.791 Sum_probs=23.7
Q ss_pred chhhhccccccCCCCCC-ccccCccccC
Q 024601 93 REATCRQYEENTCNRGG-YCNFMHLKRI 119 (265)
Q Consensus 93 reA~Cr~~e~g~C~RGg-~CNFmH~~~~ 119 (265)
+..+|+.|..|.|.||. .|.|.|....
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 45689999999999999 8999999754
No 224
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=81.39 E-value=0.3 Score=35.25 Aligned_cols=28 Identities=21% Similarity=0.799 Sum_probs=0.0
Q ss_pred Ccchhhhcccc-ccCCCCCCccccCcccc
Q 024601 91 DFREATCRQYE-ENTCNRGGYCNFMHLKR 118 (265)
Q Consensus 91 dFreA~Cr~~e-~g~C~RGg~CNFmH~~~ 118 (265)
.++..+|..|. .|.|+.|..|.|+|...
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp -----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 45567898775 79999999999999753
No 225
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=80.92 E-value=1.2 Score=35.40 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
.||...|+.||-|.=-+|-+..++++|.+.+.|..|+..|+
T Consensus 30 ~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 58888999999887778888889999999999999999874
No 226
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=79.95 E-value=0.86 Score=34.47 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=26.0
Q ss_pred cchhhhccccccCCCCCCccccCccccCCHHHHHHhh
Q 024601 92 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128 (265)
Q Consensus 92 FreA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~r~L~ 128 (265)
-+..+|..|..|.|.|+ .|.|+|+.. .|+..|-
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~~~---~l~~~~~ 73 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHPPP---HLKTQLE 73 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCCCH---HHHHHHH
T ss_pred CceeehhHhhhccccCC-CcceeCChH---HHHHHHh
Confidence 34578999999999999 899999854 5655543
No 227
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=79.43 E-value=0.43 Score=37.63 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=28.0
Q ss_pred ecCHHHHHHHHHHh-CCceeCCeeEEEEecCC
Q 024601 59 FREEEQAARALKSL-SGRFYAGRPIIVDFSPV 89 (265)
Q Consensus 59 F~~eedA~kAik~L-NGR~F~GR~I~vEfSpV 89 (265)
|.+.++|++|++.| ||..++| +|.+.++..
T Consensus 20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 20 AVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 99999999999999 9999999 999998753
No 228
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=79.43 E-value=0.47 Score=42.16 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=26.5
Q ss_pred hhhccccccCCCCCCccccCccccCCHHHH
Q 024601 95 ATCRQYEENTCNRGGYCNFMHLKRISRDLR 124 (265)
Q Consensus 95 A~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~ 124 (265)
-+|--|..|.|.+|..|.|+|-++...++.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt~~d~~ 100 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPDEEDIG 100 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCCHHHHH
T ss_pred eEcCccccCCCCCCCCCCccCCCCCccchh
Confidence 378889999999999999999988877765
No 229
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=77.32 E-value=0.53 Score=34.49 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=31.0
Q ss_pred hCCceeCCeeEEEEecCCC-Ccchhhhccccc-cCCCCCCccccCccccCCH
Q 024601 72 LSGRFYAGRPIIVDFSPVT-DFREATCRQYEE-NTCNRGGYCNFMHLKRISR 121 (265)
Q Consensus 72 LNGR~F~GR~I~vEfSpVt-dFreA~Cr~~e~-g~C~RGg~CNFmH~~~~sr 121 (265)
|.|.--.|-. +.|+... .-+..+|.-|.. |.|.+ ..|.|+|+.+.++
T Consensus 23 l~G~C~~G~~--C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 23 LRGLCKKGDQ--CEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp HTTCCCCGGG--SSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred hcCCCCCCCC--CCCccccccccCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 3344444433 5555432 234568999998 99999 9999999987653
No 230
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.44 E-value=0.97 Score=33.20 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=26.2
Q ss_pred EEecCCCC-cchhhhccccc-cCCCCCCccccCccccCC
Q 024601 84 VDFSPVTD-FREATCRQYEE-NTCNRGGYCNFMHLKRIS 120 (265)
Q Consensus 84 vEfSpVtd-FreA~Cr~~e~-g~C~RGg~CNFmH~~~~s 120 (265)
+.|+...+ -+..+|.-|.. |.|. |..|.|+|+.+..
T Consensus 27 C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~ 64 (77)
T 2d9n_A 27 CEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPES 64 (77)
T ss_dssp SSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTS
T ss_pred CCCccccccCcCCCCcccCCCCccC-CCCeeccCCCccc
Confidence 44554322 23467999988 9999 8999999998643
No 231
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=73.39 E-value=1.9 Score=33.28 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=21.5
Q ss_pred hhhhccc-cccCCCCCCccccCcccc
Q 024601 94 EATCRQY-EENTCNRGGYCNFMHLKR 118 (265)
Q Consensus 94 eA~Cr~~-e~g~C~RGg~CNFmH~~~ 118 (265)
...|..| ..|.|+.|..|.|+|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4679988 489999999999999854
No 232
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=72.80 E-value=1 Score=35.72 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 33 EDLFEELNKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 33 EDV~eEfsKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
.||...|+.||-|.=-+|-+..++++|.+.+.|..|+..|+
T Consensus 20 ~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 58999999999777667777888899999999999999875
No 233
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=72.50 E-value=1.4 Score=33.86 Aligned_cols=32 Identities=28% Similarity=0.586 Sum_probs=26.5
Q ss_pred chhhhccccccCCCCCCccccCccccCCHHHHHHhh
Q 024601 93 REATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 128 (265)
Q Consensus 93 reA~Cr~~e~g~C~RGg~CNFmH~~~~sr~L~r~L~ 128 (265)
+..+|..|..|.|.|+ .|.|+|+. ..|+.+|-
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~---~hl~~~~~ 81 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPP---THLKTQLE 81 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCC---HHHHHHHH
T ss_pred ceeeehhhhhCcCCCC-CcceecCH---HHHHHHHH
Confidence 5678999999999998 89999984 46776664
No 234
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=68.65 E-value=1.6 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.7
Q ss_pred chhhhcccc-ccCCCCCCccccCccccCC
Q 024601 93 REATCRQYE-ENTCNRGGYCNFMHLKRIS 120 (265)
Q Consensus 93 reA~Cr~~e-~g~C~RGg~CNFmH~~~~s 120 (265)
...+|.+|- -|-|+.|..|+|+|-.-++
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCC
Confidence 568999995 5999999999999976554
No 235
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=60.58 E-value=16 Score=31.92 Aligned_cols=61 Identities=26% Similarity=0.416 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC-CeeEEEEecCCCCce---ecCHHHHHHHHHHhCC-------ceeCCeeEEE
Q 024601 19 LDPRKIQEHFEDFYEDLFEELNKYG-EIESLNICDNLADHM---FREEEQAARALKSLSG-------RFYAGRPIIV 84 (265)
Q Consensus 19 ~d~eelqe~FdeFyEDV~eEfsKyG-eI~dV~V~~N~g~hl---F~~eedA~kAik~LNG-------R~F~GR~I~v 84 (265)
+.+.+|..+|..|...|...+.+-| .+..+. .||+ -.+.+.|+.+...|-. -.++||||.+
T Consensus 12 ~~~~~l~~dl~~F~~ki~~l~~~Lgldl~~~~-----~DHIalRvn~~~~Ae~~~~~l~~~G~llSen~INGRPI~l 83 (192)
T 1k4n_A 12 DELQDIASDLPRFIHALDELSRRLGLNITPLT-----ADHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICL 83 (192)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTCCCTTCE-----EEEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCchhcc-----CcEEEEecCCHHHHHHHHHHHHHhchhhhccccCCeeEEE
Confidence 5678888999999999999999988 544443 3666 6677888887777654 6789999965
No 236
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=48.19 E-value=5.7 Score=38.64 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCeeEEEEecCCCCc---eecCHHHHHHHHHH
Q 024601 32 YEDLFEELNKYGEIESLNICDNLADH---MFREEEQAARALKS 71 (265)
Q Consensus 32 yEDV~eEfsKyGeI~dV~V~~N~g~h---lF~~eedA~kAik~ 71 (265)
+.+|.+.|++||+|.++...+..+-. .|.+.++|..++..
T Consensus 66 ~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 66 ENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp -CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred HHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 35788999999999999999877643 29999888866544
No 237
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=39.43 E-value=13 Score=26.28 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=31.8
Q ss_pred CeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEec
Q 024601 44 EIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDFS 87 (265)
Q Consensus 44 eI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEfS 87 (265)
.|-.|.|.+++.++.- ..+.|..+++.|++.++.|++|.++.+
T Consensus 32 ~IG~I~i~d~~s~v~v-~~~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMDNASYVEI-LNGKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECSSCEEEEE-CTTCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeCCcEEEEE-CHHHHHHHHHHhccccCcCceEEEEEC
Confidence 5788888888776653 345688899999999999999998865
No 238
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=36.51 E-value=11 Score=32.58 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=37.4
Q ss_pred ecCHH---HHHHHHHHhCCceeCCeeEEEEecCCCCcchhhhc--cccccCCCCCCccccCcccc
Q 024601 59 FREEE---QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCR--QYEENTCNRGGYCNFMHLKR 118 (265)
Q Consensus 59 F~~ee---dA~kAik~LNGR~F~GR~I~vEfSpVtdFreA~Cr--~~e~g~C~RGg~CNFmH~~~ 118 (265)
|.+++ .|+++++.|+..| +++|.+++.|...|-.|-=- +|. .+-+ +++|.=.|..+
T Consensus 125 y~~~~Q~~~A~~~~~~l~~~~--~~~IvTeI~p~~~Fy~AE~yHQ~Yl-~knP-~~Yccp~h~~r 185 (187)
T 3pim_A 125 AHSDADLKELAKIKEEWQPKW--GNKIATVIEPIKNFYDAEEYHQLYL-DKNP-QGYACPTHYLR 185 (187)
T ss_dssp ESSHHHHHHHHHHHHHHGGGG--TTCBCCEEEEEEEEEEHHHHHHHHC-TTCT-TCTTCCSCCCC
T ss_pred eCCHHHHHHHHHHHHHHHHHh--CCCcEEEEeeCCCeeecHHHHHHHH-HHCC-CCCCCCccccc
Confidence 66665 4667778888765 78999999999998655321 222 2223 57888666654
No 239
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=36.15 E-value=18 Score=28.07 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=19.1
Q ss_pred CCCceecCHHHHHHHHHHhCCce
Q 024601 54 LADHMFREEEQAARALKSLSGRF 76 (265)
Q Consensus 54 ~g~hlF~~eedA~kAik~LNGR~ 76 (265)
.+++.|.+.++|++|++.+++..
T Consensus 15 ~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 15 ETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhHHHHHHhhcccC
Confidence 35666999999999999998643
No 240
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.16 E-value=61 Score=25.68 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHH-HhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCC
Q 024601 34 DLFEEL-NKYGEIESLNICDNLADHMFREEEQAARALKSLSG 74 (265)
Q Consensus 34 DV~eEf-sKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNG 74 (265)
||...+ ..||.-.+|..+.+..-+--.+.+|-.+||+.|+-
T Consensus 32 eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDr 73 (103)
T 2cu1_A 32 DLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDR 73 (103)
T ss_dssp HHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHcc
Confidence 444444 36888999998855544559999999999999863
No 241
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=33.19 E-value=65 Score=25.08 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=36.7
Q ss_pred HHHHHHH-HhcCCeeEEEEecCCCCceecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 024601 33 EDLFEEL-NKYGEIESLNICDNLADHMFREEEQAARALKSLSGRFYAGRPIIVDF 86 (265)
Q Consensus 33 EDV~eEf-sKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LNGR~F~GR~I~vEf 86 (265)
+||.... ..||.-.+|..+.|.--+-..+.+|-.+||+.|+ +...=+-|.+-+
T Consensus 27 ~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL 80 (94)
T 2jrh_A 27 EDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILD-RSSSMKSLRILL 80 (94)
T ss_dssp HHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHH-HSTTTTEEEEEE
T ss_pred HHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhc-cCccccceEEEE
Confidence 4455555 4799999999886544444999999999999975 444444444444
No 242
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=29.76 E-value=72 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.360 Sum_probs=31.2
Q ss_pred HHHHHHH-HhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 33 EDLFEEL-NKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 33 EDV~eEf-sKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
+||.... ..||.-.+|..+.|.--+-..+.+|-.+||+.|+
T Consensus 54 ~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLD 95 (111)
T 2c60_A 54 EDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILD 95 (111)
T ss_dssp HHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhc
Confidence 3455555 4799999999885544344899999999999975
No 243
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=25.83 E-value=84 Score=24.73 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHHHHHH-HhcCCeeEEEEecCCCCceecCHHHHHHHHHHhC
Q 024601 33 EDLFEEL-NKYGEIESLNICDNLADHMFREEEQAARALKSLS 73 (265)
Q Consensus 33 EDV~eEf-sKyGeI~dV~V~~N~g~hlF~~eedA~kAik~LN 73 (265)
+||.... ..||.-.+|..+.|.--+-..+.+|-.+||+.|+
T Consensus 43 ~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 43 EDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp HHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhc
Confidence 4455555 4799999999885543334899999999999875
No 244
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=22.73 E-value=35 Score=22.86 Aligned_cols=13 Identities=46% Similarity=0.899 Sum_probs=10.7
Q ss_pred CCCCCCccccCcc
Q 024601 104 TCNRGGYCNFMHL 116 (265)
Q Consensus 104 ~C~RGg~CNFmH~ 116 (265)
.|++|-.|||.-+
T Consensus 26 ~C~rg~~Cn~fll 38 (41)
T 1hy9_A 26 DCPRGTSCNSFLL 38 (41)
T ss_dssp BCCTTCCBCTTTC
T ss_pred CCCCCCcchhhhe
Confidence 6999999997544
No 245
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=21.14 E-value=1.6e+02 Score=23.41 Aligned_cols=34 Identities=9% Similarity=0.370 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeeEEEE
Q 024601 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNI 50 (265)
Q Consensus 17 ~~~d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V 50 (265)
..++++++-.-..+++..+...+.+||-+..++.
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~ 58 (190)
T 3et6_A 25 SRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVET 58 (190)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3468899988889999999999999966666544
No 246
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*
Probab=20.01 E-value=1.7e+02 Score=23.63 Aligned_cols=50 Identities=10% Similarity=0.241 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEecCCCCce---ecCHHHHHHHHHHhC
Q 024601 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHM---FREEEQAARALKSLS 73 (265)
Q Consensus 20 d~eelqe~FdeFyEDV~eEfsKyGeI~dV~V~~N~g~hl---F~~eedA~kAik~LN 73 (265)
+++++..-..+++.-+.+.+.+||-. |.+-.++.+ |.....|..|.-.|.
T Consensus 36 ~~~~~~~~l~~~~~~~~~~i~~~gG~----v~k~~GD~~ma~f~~p~~A~~~Al~~~ 88 (184)
T 1ybt_A 36 GDDRWRDLLDNHDTIVCHEIQRFGGR----EVNTAGDGFVATFTSPSAAIACADDIV 88 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCE----ECCCSSSSEEEEESCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCE----EEeEeCCEEEEEeCCHHHHHHHHHHHH
Confidence 45666677778888888888888732 233345533 888888777655554
Done!