Query 024603
Match_columns 265
No_of_seqs 301 out of 1830
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 6E-19 1.3E-23 163.4 1.1 80 181-263 202-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 3.5E-15 7.5E-20 99.3 1.8 44 211-255 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.4 1.1E-13 2.4E-18 123.3 4.8 77 184-260 148-228 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.2 4.9E-12 1.1E-16 93.3 3.8 45 210-255 19-73 (73)
5 COG5540 RING-finger-containing 99.2 4.2E-12 9.1E-17 114.9 3.6 53 207-260 320-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 2.3E-12 4.9E-17 119.3 1.7 70 184-258 265-344 (491)
7 PF13920 zf-C3HC4_3: Zinc fing 99.1 4.8E-11 1E-15 81.4 2.9 47 210-260 2-49 (50)
8 PLN03208 E3 ubiquitin-protein 99.1 9E-11 2E-15 101.1 3.1 52 206-261 14-81 (193)
9 PHA02926 zinc finger-like prot 99.0 1.6E-10 3.4E-15 101.0 2.6 56 204-259 164-230 (242)
10 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.1E-10 6.7E-15 73.5 3.1 39 213-254 1-39 (39)
11 KOG0317 Predicted E3 ubiquitin 99.0 2.3E-10 5.1E-15 103.1 3.3 51 208-262 237-287 (293)
12 cd00162 RING RING-finger (Real 99.0 3.6E-10 7.8E-15 73.5 3.0 44 212-258 1-45 (45)
13 PF12861 zf-Apc11: Anaphase-pr 98.9 5.2E-10 1.1E-14 84.3 3.1 52 209-260 20-83 (85)
14 KOG0823 Predicted E3 ubiquitin 98.9 5.8E-10 1.3E-14 97.9 2.5 52 207-262 44-98 (230)
15 KOG0320 Predicted E3 ubiquitin 98.9 6.7E-10 1.5E-14 93.9 2.3 53 207-261 128-180 (187)
16 PF15227 zf-C3HC4_4: zinc fing 98.8 1.3E-09 2.8E-14 72.0 2.2 38 213-254 1-42 (42)
17 PF14634 zf-RING_5: zinc-RING 98.8 2.1E-09 4.5E-14 71.5 3.2 44 212-256 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 98.8 2.6E-09 5.7E-14 69.5 2.5 39 213-254 1-41 (41)
19 KOG0802 E3 ubiquitin ligase [P 98.8 1.6E-09 3.5E-14 107.4 2.0 51 207-258 288-340 (543)
20 smart00504 Ubox Modified RING 98.8 4.4E-09 9.6E-14 74.3 2.9 46 211-260 2-47 (63)
21 smart00184 RING Ring finger. E 98.7 1.4E-08 3E-13 63.6 2.7 38 213-254 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 98.6 2.6E-08 5.7E-13 94.8 3.1 51 206-260 22-72 (397)
23 COG5194 APC11 Component of SCF 98.5 7.7E-08 1.7E-12 71.2 2.1 29 231-259 53-81 (88)
24 KOG1493 Anaphase-promoting com 98.4 6.4E-08 1.4E-12 71.0 1.0 51 209-259 19-81 (84)
25 COG5574 PEX10 RING-finger-cont 98.4 1.2E-07 2.7E-12 84.8 2.1 51 208-262 213-265 (271)
26 KOG2164 Predicted E3 ubiquitin 98.4 1.5E-07 3.2E-12 90.9 2.8 47 210-260 186-237 (513)
27 PF11793 FANCL_C: FANCL C-term 98.3 1.6E-07 3.6E-12 68.6 0.4 51 210-260 2-67 (70)
28 PF13445 zf-RING_UBOX: RING-ty 98.3 5E-07 1.1E-11 59.9 2.5 38 213-252 1-43 (43)
29 KOG0828 Predicted E3 ubiquitin 98.3 2.8E-07 6E-12 88.6 1.7 52 208-260 569-635 (636)
30 KOG2177 Predicted E3 ubiquitin 98.3 3.5E-07 7.5E-12 80.7 2.1 47 206-256 9-55 (386)
31 PF04564 U-box: U-box domain; 98.3 5.5E-07 1.2E-11 66.2 2.5 49 209-261 3-52 (73)
32 KOG1734 Predicted RING-contain 98.2 3E-07 6.6E-12 82.5 0.8 51 208-259 222-281 (328)
33 smart00744 RINGv The RING-vari 98.2 7.6E-07 1.7E-11 60.6 2.5 42 212-255 1-49 (49)
34 KOG0287 Postreplication repair 98.2 3.8E-07 8.2E-12 84.2 0.7 51 207-261 20-70 (442)
35 KOG4172 Predicted E3 ubiquitin 98.2 2E-07 4.4E-12 64.2 -1.2 52 210-265 7-60 (62)
36 COG5432 RAD18 RING-finger-cont 98.1 8.7E-07 1.9E-11 80.4 1.9 49 207-259 22-70 (391)
37 KOG4265 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 81.2 2.3 49 208-260 288-337 (349)
38 KOG0804 Cytoplasmic Zn-finger 98.1 1.2E-06 2.6E-11 83.4 1.7 49 208-259 173-222 (493)
39 COG5219 Uncharacterized conser 98.1 1.1E-06 2.4E-11 89.8 1.3 54 206-259 1465-1523(1525)
40 PF14835 zf-RING_6: zf-RING of 98.1 1.6E-06 3.5E-11 61.9 1.4 48 207-259 4-51 (65)
41 KOG1039 Predicted E3 ubiquitin 98.0 4.8E-06 1E-10 78.1 3.7 52 208-259 159-221 (344)
42 KOG0311 Predicted E3 ubiquitin 98.0 1.4E-06 3.1E-11 80.9 -0.6 51 207-260 40-91 (381)
43 KOG4445 Uncharacterized conser 97.9 2.3E-06 4.9E-11 78.0 -0.4 55 208-263 113-190 (368)
44 KOG2930 SCF ubiquitin ligase, 97.9 5.4E-06 1.2E-10 64.4 1.7 49 210-258 46-107 (114)
45 KOG0978 E3 ubiquitin ligase in 97.6 1.4E-05 3.1E-10 80.5 0.8 53 206-262 639-692 (698)
46 KOG0825 PHD Zn-finger protein 97.5 1.9E-05 4.2E-10 79.6 -0.3 50 209-259 122-171 (1134)
47 KOG0297 TNF receptor-associate 97.5 5E-05 1.1E-09 72.8 2.1 52 207-261 18-69 (391)
48 KOG1785 Tyrosine kinase negati 97.2 0.00013 2.9E-09 68.9 1.6 48 211-262 370-419 (563)
49 PF11789 zf-Nse: Zinc-finger o 97.2 0.00014 3E-09 51.1 1.3 43 208-253 9-53 (57)
50 KOG4159 Predicted E3 ubiquitin 97.1 0.00029 6.2E-09 67.5 2.2 49 208-260 82-130 (398)
51 KOG1941 Acetylcholine receptor 97.0 0.0002 4.4E-09 67.5 0.4 49 208-257 363-414 (518)
52 KOG1002 Nucleotide excision re 97.0 0.00031 6.8E-09 68.6 1.7 49 207-259 533-586 (791)
53 KOG1813 Predicted E3 ubiquitin 96.8 0.00041 8.9E-09 63.3 1.1 46 211-260 242-287 (313)
54 KOG2660 Locus-specific chromos 96.8 0.00035 7.6E-09 64.7 0.0 52 207-261 12-63 (331)
55 KOG4692 Predicted E3 ubiquitin 96.7 0.00093 2E-08 62.5 2.6 49 207-259 419-467 (489)
56 COG5152 Uncharacterized conser 96.7 0.00058 1.2E-08 59.2 1.1 44 211-258 197-240 (259)
57 PF14570 zf-RING_4: RING/Ubox 96.7 0.0013 2.8E-08 44.6 2.5 45 213-258 1-47 (48)
58 KOG2879 Predicted E3 ubiquitin 96.7 0.001 2.3E-08 60.2 2.6 51 207-260 236-288 (298)
59 KOG3970 Predicted E3 ubiquitin 96.7 0.0013 2.9E-08 58.1 3.1 55 206-262 46-108 (299)
60 PF13441 Gly-zipper_YMGG: YMGG 96.7 0.0016 3.4E-08 43.5 2.7 37 52-89 6-42 (45)
61 PF13436 Gly-zipper_OmpA: Glyc 96.6 0.0012 2.7E-08 52.9 2.4 41 51-92 54-94 (118)
62 KOG1428 Inhibitor of type V ad 96.5 0.0019 4E-08 69.4 3.5 66 192-259 3469-3544(3738)
63 PF13488 Gly-zipper_Omp: Glyci 96.4 0.0019 4.2E-08 43.4 2.0 38 54-92 4-41 (46)
64 KOG1814 Predicted E3 ubiquitin 96.3 0.0034 7.4E-08 59.8 3.7 47 209-256 183-237 (445)
65 PHA02862 5L protein; Provision 96.3 0.0031 6.7E-08 52.1 2.6 46 210-259 2-53 (156)
66 KOG0826 Predicted E3 ubiquitin 96.2 0.0025 5.4E-08 59.1 2.2 49 207-258 297-345 (357)
67 KOG1952 Transcription factor N 96.2 0.0026 5.6E-08 65.3 2.0 52 208-259 189-247 (950)
68 KOG3039 Uncharacterized conser 96.2 0.0042 9.2E-08 55.6 3.2 54 209-262 220-273 (303)
69 PF13441 Gly-zipper_YMGG: YMGG 96.1 0.0032 7E-08 42.0 1.8 38 54-92 4-41 (45)
70 PF05433 Rick_17kDa_Anti: Glyc 96.1 0.0021 4.6E-08 42.3 0.6 37 56-92 2-40 (42)
71 KOG4275 Predicted E3 ubiquitin 96.0 0.001 2.2E-08 60.8 -1.3 43 210-260 300-343 (350)
72 PHA03096 p28-like protein; Pro 96.0 0.0029 6.3E-08 58.2 1.5 36 211-246 179-218 (284)
73 KOG1571 Predicted E3 ubiquitin 96.0 0.0028 6E-08 59.5 1.1 47 207-260 302-348 (355)
74 PF10367 Vps39_2: Vacuolar sor 95.9 0.0036 7.8E-08 48.3 1.4 34 207-242 75-108 (109)
75 PHA02825 LAP/PHD finger-like p 95.7 0.0082 1.8E-07 50.4 2.7 49 207-259 5-59 (162)
76 PRK10510 putative outer membra 95.7 0.01 2.2E-07 52.6 3.4 42 52-93 38-81 (219)
77 PF12906 RINGv: RING-variant d 95.6 0.0088 1.9E-07 40.2 2.2 41 213-254 1-47 (47)
78 KOG0801 Predicted E3 ubiquitin 95.4 0.0064 1.4E-07 51.2 1.0 41 195-238 164-204 (205)
79 PF13488 Gly-zipper_Omp: Glyci 95.3 0.0086 1.9E-07 40.2 1.4 38 55-93 1-38 (46)
80 PF13436 Gly-zipper_OmpA: Glyc 95.3 0.0097 2.1E-07 47.8 1.8 41 51-92 50-90 (118)
81 KOG2114 Vacuolar assembly/sort 95.2 0.0083 1.8E-07 61.7 1.4 43 210-258 840-882 (933)
82 COG5236 Uncharacterized conser 95.2 0.013 2.8E-07 55.0 2.4 48 206-257 57-106 (493)
83 KOG1940 Zn-finger protein [Gen 95.2 0.0052 1.1E-07 56.2 -0.1 51 210-262 158-209 (276)
84 PF14447 Prok-RING_4: Prokaryo 95.2 0.011 2.3E-07 41.1 1.5 47 210-262 7-53 (55)
85 KOG3268 Predicted E3 ubiquitin 95.1 0.01 2.2E-07 50.9 1.5 50 210-259 165-228 (234)
86 COG5175 MOT2 Transcriptional r 94.8 0.016 3.5E-07 54.1 2.1 56 209-265 13-70 (480)
87 PF05883 Baculo_RING: Baculovi 94.8 0.015 3.2E-07 47.7 1.6 38 210-248 26-69 (134)
88 KOG3002 Zn finger protein [Gen 94.6 0.02 4.2E-07 53.1 2.2 47 208-260 46-92 (299)
89 COG5222 Uncharacterized conser 94.6 0.019 4E-07 52.9 1.9 43 211-256 275-318 (427)
90 PF08746 zf-RING-like: RING-li 94.3 0.03 6.6E-07 36.9 1.9 41 213-254 1-43 (43)
91 PF04641 Rtf2: Rtf2 RING-finge 94.3 0.041 9E-07 49.9 3.5 54 207-261 110-163 (260)
92 PRK10540 lipoprotein; Provisio 93.7 0.091 2E-06 38.6 3.6 36 54-93 35-70 (72)
93 KOG0827 Predicted E3 ubiquitin 93.2 0.006 1.3E-07 57.8 -4.1 51 210-261 196-247 (465)
94 PRK11280 hypothetical protein; 93.0 0.054 1.2E-06 46.2 1.7 41 55-95 66-108 (170)
95 KOG2932 E3 ubiquitin ligase in 93.0 0.039 8.5E-07 51.0 0.9 45 211-260 91-135 (389)
96 KOG1100 Predicted E3 ubiquitin 92.7 0.07 1.5E-06 47.0 2.1 41 213-261 161-202 (207)
97 PF05290 Baculo_IE-1: Baculovi 92.6 0.081 1.8E-06 43.3 2.2 54 209-262 79-135 (140)
98 PF03854 zf-P11: P-11 zinc fin 92.3 0.07 1.5E-06 36.0 1.2 31 231-261 17-48 (50)
99 KOG0298 DEAD box-containing he 92.3 0.052 1.1E-06 58.3 0.9 48 206-257 1149-1197(1394)
100 KOG1001 Helicase-like transcri 92.2 0.063 1.4E-06 55.0 1.3 44 211-259 455-500 (674)
101 PRK10540 lipoprotein; Provisio 92.1 0.17 3.7E-06 37.2 3.2 13 56-68 55-67 (72)
102 TIGR03789 pdsO proteobacterial 91.5 0.079 1.7E-06 47.7 1.0 16 77-92 61-76 (239)
103 KOG3161 Predicted E3 ubiquitin 91.5 0.057 1.2E-06 54.3 0.1 45 209-256 10-54 (861)
104 KOG4362 Transcriptional regula 91.5 0.06 1.3E-06 54.7 0.2 50 208-261 19-71 (684)
105 KOG1645 RING-finger-containing 91.3 0.13 2.8E-06 49.3 2.2 30 229-258 24-55 (463)
106 PF10272 Tmpp129: Putative tra 91.1 0.28 6E-06 46.6 4.2 29 232-260 311-352 (358)
107 PF14446 Prok-RING_1: Prokaryo 90.8 0.26 5.6E-06 34.2 2.8 41 209-253 4-44 (54)
108 COG5220 TFB3 Cdk activating ki 90.5 0.086 1.9E-06 47.2 0.3 50 209-258 9-63 (314)
109 KOG2034 Vacuolar sorting prote 90.3 0.13 2.7E-06 53.6 1.3 37 207-245 814-850 (911)
110 PF07800 DUF1644: Protein of u 90.0 0.34 7.4E-06 40.8 3.4 38 209-246 1-47 (162)
111 COG4803 Predicted membrane pro 88.5 0.058 1.3E-06 45.0 -2.1 19 74-92 82-100 (170)
112 PF07975 C1_4: TFIIH C1-like d 88.0 0.53 1.2E-05 32.3 2.7 43 213-255 2-50 (51)
113 PF06897 DUF1269: Protein of u 87.9 0.15 3.3E-06 39.9 -0.1 13 76-88 23-35 (102)
114 PF02891 zf-MIZ: MIZ/SP-RING z 87.7 0.24 5.3E-06 33.6 0.9 43 211-257 3-50 (50)
115 KOG3053 Uncharacterized conser 87.7 0.21 4.5E-06 45.2 0.6 52 207-259 17-82 (293)
116 KOG1812 Predicted E3 ubiquitin 87.4 0.24 5.3E-06 47.5 1.0 37 209-246 145-182 (384)
117 KOG2817 Predicted E3 ubiquitin 87.4 0.4 8.6E-06 45.8 2.4 48 209-257 333-383 (394)
118 KOG4185 Predicted E3 ubiquitin 86.5 0.4 8.6E-06 43.9 1.8 32 226-258 22-54 (296)
119 KOG1609 Protein involved in mR 86.0 0.44 9.6E-06 43.4 1.9 49 210-259 78-134 (323)
120 KOG3579 Predicted E3 ubiquitin 85.7 0.34 7.4E-06 44.5 0.9 36 209-248 267-306 (352)
121 PF05433 Rick_17kDa_Anti: Glyc 85.3 0.34 7.3E-06 31.9 0.5 33 54-86 4-38 (42)
122 PF06897 DUF1269: Protein of u 84.9 0.88 1.9E-05 35.6 2.8 23 55-77 20-42 (102)
123 PF10571 UPF0547: Uncharacteri 84.8 0.46 9.9E-06 28.0 0.9 23 212-236 2-24 (26)
124 KOG0269 WD40 repeat-containing 84.2 0.78 1.7E-05 47.2 2.8 41 211-253 780-820 (839)
125 TIGR02865 spore_II_E stage II 83.4 4.7 0.0001 42.2 8.2 55 40-94 177-252 (764)
126 TIGR00622 ssl1 transcription f 83.1 1.3 2.9E-05 35.2 3.2 46 210-255 55-110 (112)
127 KOG3113 Uncharacterized conser 83.1 2.8 6.2E-05 38.0 5.6 52 209-262 110-161 (293)
128 smart00249 PHD PHD zinc finger 82.2 0.99 2.1E-05 28.6 1.8 31 212-243 1-31 (47)
129 KOG0309 Conserved WD40 repeat- 82.1 0.77 1.7E-05 47.3 1.8 23 231-253 1047-1069(1081)
130 COG5183 SSM4 Protein involved 81.7 0.95 2.1E-05 47.0 2.3 51 208-259 10-66 (1175)
131 PF00628 PHD: PHD-finger; Int 81.5 0.6 1.3E-05 31.1 0.6 44 212-256 1-50 (51)
132 KOG3899 Uncharacterized conser 81.2 0.66 1.4E-05 42.8 0.9 28 232-259 325-365 (381)
133 PF05818 TraT: Enterobacterial 81.0 1 2.2E-05 39.9 1.9 36 55-92 88-124 (215)
134 KOG0802 E3 ubiquitin ligase [P 80.8 0.74 1.6E-05 46.0 1.2 47 208-262 477-523 (543)
135 PRK10510 putative outer membra 80.7 0.81 1.7E-05 40.5 1.3 40 55-94 37-78 (219)
136 KOG2068 MOT2 transcription fac 80.5 1.3 2.9E-05 41.4 2.7 51 210-261 249-300 (327)
137 PLN02720 complex II 79.8 1.4 3E-05 35.9 2.2 59 32-96 54-115 (140)
138 PRK10457 hypothetical protein; 78.8 3.6 7.7E-05 30.9 4.1 51 45-95 28-78 (82)
139 KOG0825 PHD Zn-finger protein 78.0 1.1 2.5E-05 46.3 1.5 51 208-258 94-153 (1134)
140 PF01363 FYVE: FYVE zinc finge 77.0 1.5 3.3E-05 31.1 1.5 39 208-246 7-45 (69)
141 PF13901 DUF4206: Domain of un 74.9 2.1 4.6E-05 37.4 2.2 43 209-256 151-197 (202)
142 smart00064 FYVE Protein presen 73.6 1.1 2.4E-05 31.8 0.0 37 210-246 10-46 (68)
143 COG3134 Predicted outer membra 73.6 1.6 3.4E-05 36.5 0.9 42 54-95 71-114 (179)
144 KOG4718 Non-SMC (structural ma 73.1 1.9 4.2E-05 38.0 1.5 43 210-255 181-223 (235)
145 PRK11677 hypothetical protein; 71.9 2.8 6.1E-05 34.4 2.1 24 51-74 4-27 (134)
146 PF13719 zinc_ribbon_5: zinc-r 71.4 2.4 5.3E-05 26.8 1.3 27 211-237 3-36 (37)
147 KOG1812 Predicted E3 ubiquitin 70.7 2.9 6.3E-05 40.1 2.2 69 185-254 279-351 (384)
148 PF11023 DUF2614: Protein of u 70.5 3.9 8.4E-05 32.6 2.5 28 228-261 71-98 (114)
149 COG4980 GvpP Gas vesicle prote 70.1 2.5 5.4E-05 33.8 1.4 14 55-68 9-22 (115)
150 PRK09430 djlA Dna-J like membr 70.0 4 8.7E-05 37.2 2.9 61 39-102 3-72 (267)
151 PF07191 zinc-ribbons_6: zinc- 68.5 0.85 1.8E-05 33.3 -1.5 40 211-259 2-41 (70)
152 COG4803 Predicted membrane pro 67.2 6.6 0.00014 33.0 3.3 26 52-77 78-103 (170)
153 KOG3005 GIY-YIG type nuclease 67.0 3.2 6.9E-05 37.9 1.5 48 211-258 183-242 (276)
154 KOG1815 Predicted E3 ubiquitin 66.6 3.1 6.7E-05 40.6 1.5 37 208-247 68-104 (444)
155 cd00065 FYVE FYVE domain; Zinc 65.6 4.5 9.7E-05 27.4 1.8 36 211-246 3-38 (57)
156 PF05605 zf-Di19: Drought indu 64.7 2.5 5.5E-05 28.7 0.4 39 210-259 2-42 (54)
157 COG3133 SlyB Outer membrane li 64.6 1.2 2.5E-05 36.8 -1.6 40 51-92 62-101 (154)
158 KOG2807 RNA polymerase II tran 64.6 4.4 9.6E-05 38.0 2.0 47 208-255 328-374 (378)
159 smart00132 LIM Zinc-binding do 64.5 6.7 0.00015 23.7 2.3 38 212-259 1-38 (39)
160 KOG4608 Uncharacterized conser 63.9 1.4 3.1E-05 39.5 -1.3 40 52-94 164-203 (270)
161 PRK05978 hypothetical protein; 61.3 5.7 0.00012 33.2 1.9 29 229-262 36-66 (148)
162 KOG0824 Predicted E3 ubiquitin 59.5 4.4 9.6E-05 37.6 1.1 49 208-259 103-151 (324)
163 PF10497 zf-4CXXC_R1: Zinc-fin 59.2 10 0.00022 29.7 3.0 48 209-256 6-69 (105)
164 PF12732 YtxH: YtxH-like prote 59.0 3 6.6E-05 30.3 -0.1 11 78-88 8-18 (74)
165 PF13717 zinc_ribbon_4: zinc-r 58.8 6.9 0.00015 24.6 1.6 27 211-237 3-36 (36)
166 KOG2041 WD40 repeat protein [G 58.3 11 0.00024 39.2 3.7 49 208-260 1129-1186(1189)
167 KOG1829 Uncharacterized conser 57.2 3.6 7.8E-05 41.5 0.1 44 209-256 510-558 (580)
168 PF06906 DUF1272: Protein of u 56.1 14 0.00031 25.8 2.8 45 211-260 6-53 (57)
169 PRK11280 hypothetical protein; 55.9 5.3 0.00012 34.1 0.9 44 49-94 68-111 (170)
170 PF05818 TraT: Enterobacterial 55.5 4.6 0.0001 35.8 0.5 37 53-89 90-129 (215)
171 smart00647 IBR In Between Ring 55.2 4.9 0.00011 27.5 0.5 21 224-244 38-58 (64)
172 PF14311 DUF4379: Domain of un 55.0 9.3 0.0002 26.0 1.9 26 228-254 30-55 (55)
173 PF04423 Rad50_zn_hook: Rad50 53.7 3.6 7.9E-05 28.0 -0.4 11 250-260 22-32 (54)
174 PF06295 DUF1043: Protein of u 53.3 7.9 0.00017 31.3 1.5 22 53-74 2-23 (128)
175 KOG3039 Uncharacterized conser 51.6 7.9 0.00017 35.1 1.3 34 209-246 42-75 (303)
176 PF06750 DiS_P_DiS: Bacterial 51.3 13 0.00028 28.4 2.3 39 209-260 32-70 (92)
177 PF09723 Zn-ribbon_8: Zinc rib 51.0 5.4 0.00012 25.8 0.2 29 229-258 8-37 (42)
178 cd00350 rubredoxin_like Rubred 50.2 11 0.00024 23.0 1.5 21 231-257 6-26 (33)
179 PF00412 LIM: LIM domain; Int 50.1 17 0.00036 24.3 2.5 38 213-260 1-38 (58)
180 COG5336 Uncharacterized protei 49.6 6.5 0.00014 31.2 0.4 34 55-88 54-90 (116)
181 PF04216 FdhE: Protein involve 49.5 4.2 9E-05 37.3 -0.8 47 210-256 172-219 (290)
182 PRK15361 pathogenicity island 48.7 16 0.00034 31.7 2.6 39 37-75 91-129 (195)
183 smart00531 TFIIE Transcription 48.5 17 0.00037 29.9 2.8 16 248-263 123-138 (147)
184 KOG4185 Predicted E3 ubiquitin 48.3 3.1 6.8E-05 37.9 -1.8 49 209-257 206-265 (296)
185 COG4171 SapC ABC-type antimicr 48.3 14 0.00031 33.2 2.4 39 32-70 84-127 (296)
186 PF07649 C1_3: C1-like domain; 47.7 15 0.00033 21.8 1.7 29 212-241 2-30 (30)
187 COG4980 GvpP Gas vesicle prote 46.8 6.2 0.00013 31.6 -0.1 24 72-95 4-27 (115)
188 PF08560 DUF1757: Protein of u 46.3 12 0.00026 31.4 1.6 38 55-92 41-84 (155)
189 KOG3842 Adaptor protein Pellin 45.4 17 0.00037 34.2 2.5 54 208-262 339-417 (429)
190 COG3133 SlyB Outer membrane li 44.7 9.3 0.0002 31.6 0.6 21 57-77 88-108 (154)
191 PF06946 Phage_holin_5: Phage 44.3 24 0.00053 27.2 2.8 32 55-86 39-71 (93)
192 PF11981 DUF3482: Domain of un 44.0 7.6 0.00016 36.0 -0.0 14 75-88 171-184 (292)
193 PLN02189 cellulose synthase 43.0 22 0.00048 38.4 3.2 51 209-259 33-87 (1040)
194 PF06844 DUF1244: Protein of u 42.7 12 0.00026 27.0 0.9 12 235-246 11-22 (68)
195 KOG1356 Putative transcription 42.5 10 0.00022 39.8 0.6 48 208-257 227-280 (889)
196 PF04888 SseC: Secretion syste 41.5 18 0.0004 33.1 2.1 10 34-43 56-65 (306)
197 KOG2066 Vacuolar assembly/sort 41.3 9.1 0.0002 39.9 0.1 45 209-255 783-831 (846)
198 PF11286 DUF3087: Protein of u 41.2 64 0.0014 27.5 5.2 54 41-95 15-68 (165)
199 PF02466 Tim17: Tim17/Tim22/Ti 39.8 1.1E+02 0.0023 24.0 6.1 7 81-87 90-96 (128)
200 COG1545 Predicted nucleic-acid 39.6 18 0.0004 29.7 1.6 25 226-258 29-53 (140)
201 KOG1538 Uncharacterized conser 39.3 14 0.0003 38.2 1.0 36 226-261 1044-1079(1081)
202 PF04710 Pellino: Pellino; In 39.2 10 0.00022 36.6 0.0 51 209-260 327-402 (416)
203 COG5109 Uncharacterized conser 38.7 17 0.00037 34.1 1.4 48 208-256 334-384 (396)
204 PF02318 FYVE_2: FYVE-type zin 38.4 20 0.00044 28.3 1.7 48 209-257 53-103 (118)
205 PF14569 zf-UDP: Zinc-binding 36.8 44 0.00096 25.0 3.1 51 209-259 8-62 (80)
206 PF04226 Transgly_assoc: Trans 35.5 27 0.00059 23.3 1.7 41 53-95 4-44 (48)
207 COG1173 DppC ABC-type dipeptid 35.5 66 0.0014 29.6 4.8 39 32-70 74-113 (289)
208 PF11177 DUF2964: Protein of u 35.4 51 0.0011 23.5 3.1 47 50-99 14-60 (62)
209 COG4239 ABC-type uncharacteriz 34.6 79 0.0017 29.4 5.0 39 32-70 129-168 (341)
210 PF09889 DUF2116: Uncharacteri 34.3 20 0.00044 25.2 1.0 16 247-262 2-17 (59)
211 PF05191 ADK_lid: Adenylate ki 34.3 19 0.0004 22.7 0.7 32 227-260 2-33 (36)
212 PRK13731 conjugal transfer sur 34.2 21 0.00046 32.2 1.3 10 56-65 119-128 (243)
213 KOG4323 Polycomb-like PHD Zn-f 33.8 19 0.00041 35.5 1.0 50 209-258 167-225 (464)
214 KOG2979 Protein involved in DN 33.6 24 0.00053 32.1 1.5 41 210-253 176-218 (262)
215 PF05052 MerE: MerE protein; 33.4 1.6E+02 0.0035 21.7 5.4 44 12-57 24-68 (75)
216 PF02466 Tim17: Tim17/Tim22/Ti 33.2 33 0.00071 27.0 2.1 30 59-91 90-119 (128)
217 PRK04023 DNA polymerase II lar 32.9 26 0.00056 37.8 1.8 46 210-261 626-676 (1121)
218 PF11240 DUF3042: Protein of u 32.9 42 0.00091 23.3 2.3 10 82-91 17-26 (54)
219 PF07282 OrfB_Zn_ribbon: Putat 32.7 36 0.00079 23.8 2.1 34 209-242 27-62 (69)
220 PRK02935 hypothetical protein; 32.6 40 0.00087 26.6 2.4 20 242-261 80-99 (110)
221 PLN02638 cellulose synthase A 32.4 41 0.00089 36.6 3.2 51 209-259 16-70 (1079)
222 smart00834 CxxC_CXXC_SSSS Puta 32.0 19 0.00041 22.5 0.5 30 229-259 8-37 (41)
223 PLN02436 cellulose synthase A 32.0 42 0.00092 36.5 3.2 51 209-259 35-89 (1094)
224 TIGR01562 FdhE formate dehydro 31.9 15 0.00033 34.2 -0.0 46 210-256 184-232 (305)
225 COG3105 Uncharacterized protei 31.4 43 0.00094 27.4 2.5 23 49-71 7-29 (138)
226 PF13771 zf-HC5HC2H: PHD-like 31.2 44 0.00096 24.5 2.4 35 208-243 34-68 (90)
227 PF10083 DUF2321: Uncharacteri 31.1 14 0.00031 31.1 -0.3 44 215-261 9-52 (158)
228 PF06596 PsbX: Photosystem II 30.7 75 0.0016 20.5 3.0 17 57-73 18-34 (39)
229 PRK14714 DNA polymerase II lar 30.7 25 0.00053 38.8 1.3 45 211-259 668-720 (1337)
230 PF01485 IBR: IBR domain; Int 30.0 12 0.00025 25.5 -0.9 33 212-244 20-58 (64)
231 PLN02400 cellulose synthase 30.0 41 0.00088 36.6 2.7 51 209-259 35-89 (1085)
232 COG5151 SSL1 RNA polymerase II 30.0 35 0.00076 32.1 2.0 49 208-256 360-418 (421)
233 PF04306 DUF456: Protein of un 29.6 42 0.00092 27.5 2.3 32 49-90 64-95 (140)
234 PF10389 CoatB: Bacteriophage 29.2 1.4E+02 0.0031 20.0 4.3 27 39-65 10-36 (46)
235 PF03107 C1_2: C1 domain; Int 29.2 36 0.00077 20.3 1.3 29 212-241 2-30 (30)
236 KOG1815 Predicted E3 ubiquitin 29.1 23 0.00051 34.5 0.7 40 209-248 225-268 (444)
237 COG4068 Uncharacterized protei 28.8 28 0.0006 24.6 0.8 17 247-263 7-23 (64)
238 PF10112 Halogen_Hydrol: 5-bro 28.6 33 0.00072 29.5 1.5 20 72-91 30-49 (199)
239 KOG4451 Uncharacterized conser 28.4 39 0.00084 30.4 1.9 25 236-260 251-275 (286)
240 PF07863 CtnDOT_TraJ: Homologu 28.2 72 0.0016 23.2 2.9 29 14-45 9-37 (68)
241 PLN02915 cellulose synthase A 28.1 53 0.0011 35.6 3.1 51 209-259 14-68 (1044)
242 PF14169 YdjO: Cold-inducible 27.9 29 0.00063 24.5 0.9 15 247-261 38-52 (59)
243 PF13832 zf-HC5HC2H_2: PHD-zin 27.7 41 0.00089 25.8 1.8 34 209-244 54-88 (110)
244 PF09719 C_GCAxxG_C_C: Putativ 27.6 45 0.00098 26.1 2.0 34 62-96 22-55 (120)
245 PRK01343 zinc-binding protein; 27.4 42 0.00091 23.5 1.5 11 249-259 10-20 (57)
246 PRK06266 transcription initiat 27.1 59 0.0013 27.8 2.8 18 245-262 133-150 (178)
247 PRK03564 formate dehydrogenase 27.1 26 0.00056 32.8 0.6 47 209-256 186-234 (309)
248 TIGR00261 traB pheromone shutd 27.1 1.1E+02 0.0024 29.4 4.9 58 3-65 314-372 (380)
249 TIGR00373 conserved hypothetic 26.5 60 0.0013 27.1 2.7 17 247-263 127-143 (158)
250 PF10146 zf-C4H2: Zinc finger- 26.0 49 0.0011 29.6 2.1 26 236-261 196-221 (230)
251 PF08566 Pam17: Mitochondrial 25.9 60 0.0013 27.9 2.5 22 44-65 79-100 (173)
252 COG3813 Uncharacterized protei 25.8 49 0.0011 24.4 1.7 44 212-258 7-51 (84)
253 PLN02248 cellulose synthase-li 25.4 51 0.0011 36.0 2.5 30 231-260 149-178 (1135)
254 smart00734 ZnF_Rad18 Rad18-lik 24.7 32 0.00069 20.0 0.5 9 250-258 3-11 (26)
255 PF10247 Romo1: Reactive mitoc 24.7 22 0.00048 25.7 -0.2 18 73-90 9-26 (67)
256 PTZ00236 mitochondrial import 24.5 41 0.00089 28.6 1.3 13 54-66 94-106 (164)
257 PLN02195 cellulose synthase A 24.5 84 0.0018 33.9 3.8 52 209-260 5-60 (977)
258 COG2261 Predicted membrane pro 24.0 1.4E+02 0.0029 22.6 3.8 46 49-95 32-77 (82)
259 PRK13731 conjugal transfer sur 23.7 49 0.0011 29.9 1.7 13 53-65 120-132 (243)
260 KOG2113 Predicted RNA binding 23.7 51 0.0011 31.1 1.8 44 209-258 342-386 (394)
261 PF06937 EURL: EURL protein; 23.5 54 0.0012 30.1 1.9 44 209-252 29-74 (285)
262 COG5627 MMS21 DNA repair prote 23.4 35 0.00076 30.8 0.7 41 210-253 189-231 (275)
263 TIGR02605 CxxC_CxxC_SSSS putat 22.8 34 0.00073 22.7 0.4 27 229-256 8-34 (52)
264 KOG2113 Predicted RNA binding 22.7 33 0.00071 32.3 0.4 46 209-258 135-182 (394)
265 KOG2907 RNA polymerase I trans 22.7 46 0.001 26.6 1.2 39 222-260 70-114 (116)
266 PF03119 DNA_ligase_ZBD: NAD-d 22.7 41 0.00088 19.9 0.7 12 250-261 1-12 (28)
267 KOG3352 Cytochrome c oxidase, 22.6 44 0.00094 28.1 1.1 26 211-237 112-144 (153)
268 PF14319 Zn_Tnp_IS91: Transpos 22.5 58 0.0013 25.6 1.7 17 231-247 57-77 (111)
269 PF14015 DUF4231: Protein of u 22.5 62 0.0013 24.7 1.9 19 52-70 24-42 (112)
270 PF10235 Cript: Microtubule-as 22.3 52 0.0011 25.2 1.4 39 210-261 44-82 (90)
271 KOG4577 Transcription factor L 22.3 20 0.00043 33.3 -1.1 44 209-262 91-134 (383)
272 PF01034 Syndecan: Syndecan do 22.3 29 0.00063 24.9 0.0 27 69-95 4-30 (64)
273 KOG1729 FYVE finger containing 22.1 17 0.00036 33.7 -1.7 50 205-254 163-220 (288)
274 PF04829 PT-VENN: Pre-toxin do 22.1 42 0.0009 23.3 0.7 11 58-68 19-29 (55)
275 COG1916 Uncharacterized homolo 22.0 2E+02 0.0044 27.7 5.5 59 2-66 321-381 (388)
276 PF10779 XhlA: Haemolysin XhlA 22.0 54 0.0012 23.5 1.4 12 55-66 54-65 (71)
277 COG3492 Uncharacterized protei 21.6 40 0.00087 25.9 0.6 12 235-246 42-53 (104)
278 KOG1818 Membrane trafficking a 21.3 29 0.00063 35.5 -0.2 47 208-254 163-217 (634)
279 KOG1973 Chromatin remodeling p 21.0 31 0.00067 31.5 -0.1 29 231-259 239-270 (274)
280 PTZ00303 phosphatidylinositol 20.9 53 0.0011 34.8 1.5 35 211-245 461-500 (1374)
281 PHA00380 tail protein 20.9 70 0.0015 32.0 2.2 49 44-97 429-482 (599)
282 PF14205 Cys_rich_KTR: Cystein 20.7 64 0.0014 22.4 1.4 8 250-257 30-37 (55)
283 PF14353 CpXC: CpXC protein 20.6 58 0.0013 25.8 1.4 9 250-258 40-48 (128)
284 PRK00398 rpoP DNA-directed RNA 20.0 43 0.00093 21.8 0.4 27 229-259 6-32 (46)
285 PF14019 DUF4235: Protein of u 20.0 63 0.0014 23.8 1.4 22 71-92 39-60 (78)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6e-19 Score=163.44 Aligned_cols=80 Identities=36% Similarity=0.796 Sum_probs=68.1
Q ss_pred cCCCCCCHHHHhcCCcccccchhhhhcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCC-ccccccccc
Q 024603 181 TGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGS-CPVCRECVC 259 (265)
Q Consensus 181 ~~~~gls~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~s-CPvCR~~v~ 259 (265)
.+.+.+.++.++++|..+++.....+ ....|+||+|+|+.++++|.|| |+|.||..||++||.++++ ||+||+++.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~--~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDED--ATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccC--CCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 35678899999999999988763322 1269999999999999999999 9999999999999998865 999999987
Q ss_pred cCCC
Q 024603 260 KDTD 263 (265)
Q Consensus 260 ~~~~ 263 (265)
+..+
T Consensus 279 ~~~~ 282 (348)
T KOG4628|consen 279 TDSG 282 (348)
T ss_pred CCCC
Confidence 6543
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.52 E-value=3.5e-15 Score=99.26 Aligned_cols=44 Identities=61% Similarity=1.427 Sum_probs=40.5
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
++|+||++++..++.+..+| |+|.||.+|+.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999998 999999999999999999999998
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.42 E-value=1.1e-13 Score=123.26 Aligned_cols=77 Identities=27% Similarity=0.624 Sum_probs=61.4
Q ss_pred CCCCHHHHhcCCcccccchhhhhcccCcccccccccccCCCe----eeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 184 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDS----ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 184 ~gls~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~~~~~~~----~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
++.+.+.++++|......+...+...+.+|+||++.+.+++. ...++.|+|.||.+||.+|++.+.+||+||.++.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 556889999999886555444345567899999999876542 2355569999999999999999999999999875
Q ss_pred c
Q 024603 260 K 260 (265)
Q Consensus 260 ~ 260 (265)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 3
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.25 E-value=4.9e-12 Score=93.28 Aligned_cols=45 Identities=40% Similarity=0.996 Sum_probs=35.6
Q ss_pred CcccccccccccCC----------CeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 210 EIGCSICLEKFEEG----------DSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 210 ~~~C~ICle~~~~~----------~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
++.|+||++.+.++ ..+... .|+|.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999443 233334 4999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.2e-12 Score=114.90 Aligned_cols=53 Identities=45% Similarity=1.042 Sum_probs=47.9
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 260 (265)
.....+|+|||++|..+++++.+| |.|.||..|+++|+. .+..||+||.++++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 344589999999999999999999 999999999999998 56789999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.3e-12 Score=119.32 Aligned_cols=70 Identities=29% Similarity=0.797 Sum_probs=51.8
Q ss_pred CCCCHHHHhcCCcccccchhhhhcccCccccccccccc-CC---------CeeeecCCCCcccchhhHHHhhcCCCCccc
Q 024603 184 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFE-EG---------DSARKLPSCGHCFHSECVDKWLTRNGSCPV 253 (265)
Q Consensus 184 ~gls~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~~~-~~---------~~~r~LP~CgH~FH~~CI~~WL~~~~sCPv 253 (265)
....++.-+.+|..+... -..++..|.||++++. .+ .+..+|| |||++|.+|++.|++++++||+
T Consensus 265 ~r~~kdl~~~~~t~t~eq----l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPI 339 (491)
T COG5243 265 RRATKDLNAMYPTATEEQ----LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPI 339 (491)
T ss_pred HHHhhHHHhhcchhhhhh----hcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCc
Confidence 344555555555443221 1456789999999954 33 2446788 9999999999999999999999
Q ss_pred ccccc
Q 024603 254 CRECV 258 (265)
Q Consensus 254 CR~~v 258 (265)
||.++
T Consensus 340 Cr~p~ 344 (491)
T COG5243 340 CRRPV 344 (491)
T ss_pred ccCcc
Confidence 99995
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=4.8e-11 Score=81.38 Aligned_cols=47 Identities=38% Similarity=0.950 Sum_probs=39.4
Q ss_pred CcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCcccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
+..|.||++...+ ...+| |||. ||..|+.+|++.+..||+||+++.+
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5689999998665 56677 9999 9999999999999999999999864
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.05 E-value=9e-11 Score=101.06 Aligned_cols=52 Identities=31% Similarity=0.784 Sum_probs=41.7
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC----------------CCCccccccccccC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR----------------NGSCPVCRECVCKD 261 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~----------------~~sCPvCR~~v~~~ 261 (265)
+..++.+|+||++.+.++.. + .|||.||..||.+|+.. +..||+||.++...
T Consensus 14 ~~~~~~~CpICld~~~dPVv---T-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVV---T-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred cCCCccCCccCCCcCCCcEE---c-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 34567899999999988644 4 49999999999999852 34799999998643
No 9
>PHA02926 zinc finger-like protein; Provisional
Probab=99.00 E-value=1.6e-10 Score=100.99 Aligned_cols=56 Identities=29% Similarity=0.670 Sum_probs=43.1
Q ss_pred hhhcccCcccccccccccCC-----CeeeecCCCCcccchhhHHHhhcCC------CCccccccccc
Q 024603 204 LIQLDNEIGCSICLEKFEEG-----DSARKLPSCGHCFHSECVDKWLTRN------GSCPVCRECVC 259 (265)
Q Consensus 204 ~~~~~~~~~C~ICle~~~~~-----~~~r~LP~CgH~FH~~CI~~WL~~~------~sCPvCR~~v~ 259 (265)
......+.+|+||+|...++ .....|+.|+|.||..||.+|.+.+ .+||+||....
T Consensus 164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 33456689999999987442 2334677899999999999998743 45999999765
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.99 E-value=3.1e-10 Score=73.46 Aligned_cols=39 Identities=46% Similarity=1.217 Sum_probs=32.1
Q ss_pred cccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccc
Q 024603 213 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVC 254 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvC 254 (265)
|+||++.+.++ +..++ |||.||.+|+.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998883 23455 99999999999999999999998
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.3e-10 Score=103.14 Aligned_cols=51 Identities=31% Similarity=0.805 Sum_probs=45.1
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
+.+..|.+||+..+++..+ .|||+||..||..|...+..||+||.+.++.+
T Consensus 237 ~a~~kC~LCLe~~~~pSaT----pCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSAT----PCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcC----cCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 4568999999998887666 49999999999999999999999999987664
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.97 E-value=3.6e-10 Score=73.46 Aligned_cols=44 Identities=48% Similarity=1.190 Sum_probs=35.8
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcC-CCCcccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECV 258 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v 258 (265)
+|+||++.+.. ..... .|+|.||..|+++|+.. +..||+||.++
T Consensus 1 ~C~iC~~~~~~--~~~~~-~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLL-PCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEec-CCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 33334 49999999999999987 77899999864
No 13
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.94 E-value=5.2e-10 Score=84.28 Aligned_cols=52 Identities=35% Similarity=0.745 Sum_probs=38.9
Q ss_pred cCcccccccccccCCC--------e-eeecCCCCcccchhhHHHhhcC---CCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGD--------S-ARKLPSCGHCFHSECVDKWLTR---NGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~--------~-~r~LP~CgH~FH~~CI~~WL~~---~~sCPvCR~~v~~ 260 (265)
+++.|.||...|...- . ...+-.|+|.||..||.+|+.. +..||+||++..-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4778999988887321 1 1123369999999999999985 4679999998653
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.8e-10 Score=97.88 Aligned_cols=52 Identities=35% Similarity=0.750 Sum_probs=43.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC---CCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN---GSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~---~sCPvCR~~v~~~~ 262 (265)
.....+|.|||+.-+++... .|||.||+.||.+||..+ +.||+||..|..++
T Consensus 44 ~~~~FdCNICLd~akdPVvT----lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVT----LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccCCCEEe----ecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 34568999999999997766 599999999999999854 45999999886553
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.7e-10 Score=93.90 Aligned_cols=53 Identities=30% Similarity=0.757 Sum_probs=43.7
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.+....|+|||+.+.....+ -.+|||+||..||..-++....||+||+.|...
T Consensus 128 ~~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34457899999999875532 127999999999999999999999999987644
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.85 E-value=1.3e-09 Score=71.96 Aligned_cols=38 Identities=39% Similarity=0.984 Sum_probs=29.9
Q ss_pred cccccccccCCCeeeecCCCCcccchhhHHHhhcCC----CCcccc
Q 024603 213 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVC 254 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~----~sCPvC 254 (265)
|+||++.|.+|..+ .|||.||..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l----~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL----PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc----CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999997777 699999999999998754 359988
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.85 E-value=2.1e-09 Score=71.48 Aligned_cols=44 Identities=39% Similarity=0.970 Sum_probs=37.7
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
.|+||++.+.+....+.++ |||+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999996556677776 9999999999999866778999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.80 E-value=2.6e-09 Score=69.47 Aligned_cols=39 Identities=51% Similarity=1.247 Sum_probs=33.5
Q ss_pred cccccccccCCCeeeecCCCCcccchhhHHHhhc--CCCCcccc
Q 024603 213 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--RNGSCPVC 254 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~--~~~sCPvC 254 (265)
|+||++.+.++. +.+| |+|.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988866 3465 999999999999998 55679998
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.6e-09 Score=107.45 Aligned_cols=51 Identities=39% Similarity=1.057 Sum_probs=44.9
Q ss_pred cccCcccccccccccCCCe--eeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDS--ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~--~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
...+..|+||+|++..+.. ..++| |+|+||..|+.+|++++.+||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhh
Confidence 3457899999999998754 66787 999999999999999999999999944
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.77 E-value=4.4e-09 Score=74.34 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=40.4
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..|+||.+.+.++.. +| |||+|+..||.+|++.+.+||+|++++..
T Consensus 2 ~~Cpi~~~~~~~Pv~---~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVI---LP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEE---CC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 579999999999743 45 99999999999999998999999998843
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.67 E-value=1.4e-08 Score=63.60 Aligned_cols=38 Identities=50% Similarity=1.328 Sum_probs=31.5
Q ss_pred cccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCcccc
Q 024603 213 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVC 254 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvC 254 (265)
|+||++... ....+| |+|.||..|+++|+. .+..||+|
T Consensus 1 C~iC~~~~~---~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 789998843 355566 999999999999998 66779987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=2.6e-08 Score=94.83 Aligned_cols=51 Identities=31% Similarity=0.712 Sum_probs=43.9
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..+....|+||++.+..+.. +| |+|.||..|+..|+..+..||+||..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~Pvi---tp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVL---TS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccC---CC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 35567899999999988753 45 99999999999999988899999998764
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.46 E-value=7.7e-08 Score=71.22 Aligned_cols=29 Identities=38% Similarity=1.047 Sum_probs=27.1
Q ss_pred CCCcccchhhHHHhhcCCCCccccccccc
Q 024603 231 SCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 231 ~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.|.|.||..||.+||..+..||++|++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 59999999999999999999999999754
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.4e-08 Score=71.04 Aligned_cols=51 Identities=33% Similarity=0.767 Sum_probs=36.8
Q ss_pred cCcccccccccccCCCeee---------ecCCCCcccchhhHHHhhcC---CCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSAR---------KLPSCGHCFHSECVDKWLTR---NGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r---------~LP~CgH~FH~~CI~~WL~~---~~sCPvCR~~v~ 259 (265)
.++.|-||...|..--.-- .+-.|.|.||..||.+|+.. +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3458888888886422111 22259999999999999974 456999999754
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-07 Score=84.75 Aligned_cols=51 Identities=31% Similarity=0.718 Sum_probs=41.6
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHH-hhcCCCC-ccccccccccCC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK-WLTRNGS-CPVCRECVCKDT 262 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~-WL~~~~s-CPvCR~~v~~~~ 262 (265)
..+..|+||++....+... .|||+||..||.. |-+++.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t----~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCT----PCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccc----cccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3477899999988775555 4999999999999 9777665 999999886543
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.5e-07 Score=90.92 Aligned_cols=47 Identities=32% Similarity=0.790 Sum_probs=39.5
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----CCCCcccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v~~ 260 (265)
+..||||++....+... .|||+||..||.+++. ....||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999998776666 6999999999998875 34679999998764
No 27
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.29 E-value=1.6e-07 Score=68.61 Aligned_cols=51 Identities=33% Similarity=0.827 Sum_probs=24.5
Q ss_pred Cccccccccccc-CCCe-eeec--CCCCcccchhhHHHhhcC----C-------CCcccccccccc
Q 024603 210 EIGCSICLEKFE-EGDS-ARKL--PSCGHCFHSECVDKWLTR----N-------GSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~-~~~~-~r~L--P~CgH~FH~~CI~~WL~~----~-------~sCPvCR~~v~~ 260 (265)
+.+|.||++... +++. .... ++|++.||..|+.+|+.. + +.||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999999876 3222 2233 379999999999999862 1 249999998863
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.28 E-value=5e-07 Score=59.88 Aligned_cols=38 Identities=39% Similarity=0.975 Sum_probs=22.3
Q ss_pred cccccccccCC-CeeeecCCCCcccchhhHHHhhcCC----CCcc
Q 024603 213 CSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRN----GSCP 252 (265)
Q Consensus 213 C~ICle~~~~~-~~~r~LP~CgH~FH~~CI~~WL~~~----~sCP 252 (265)
|+||.+ +.++ .....|| |||+||.+|+++++++. .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7553 4457788 99999999999999843 3577
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.8e-07 Score=88.58 Aligned_cols=52 Identities=29% Similarity=0.694 Sum_probs=40.1
Q ss_pred ccCcccccccccccCCCe--------------eeecCCCCcccchhhHHHhhc-CCCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDS--------------ARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~--------------~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 260 (265)
+....|+||+.++.-... -...| |.|+||..|+.+|+. .+-.||+||.++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445789999998863211 12346 999999999999999 45589999999864
No 30
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.5e-07 Score=80.72 Aligned_cols=47 Identities=47% Similarity=0.944 Sum_probs=40.5
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
...+...|+||++.|..+ ..+| |+|.||..|+..++.....||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 345789999999999998 5566 9999999999999885567999993
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.25 E-value=5.5e-07 Score=66.19 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=38.6
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-CCCccccccccccC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 261 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 261 (265)
+...|+|+.+-+.+|..+ .+||+|...||.+|+.. +.+||+||+++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~----~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL----PSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE----TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeC----CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 467899999999997766 49999999999999998 78999999988653
No 32
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3e-07 Score=82.49 Aligned_cols=51 Identities=29% Similarity=0.763 Sum_probs=42.4
Q ss_pred ccCcccccccccccCCC-------eeeecCCCCcccchhhHHHhhc--CCCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGD-------SARKLPSCGHCFHSECVDKWLT--RNGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~-------~~r~LP~CgH~FH~~CI~~WL~--~~~sCPvCR~~v~ 259 (265)
.++.-|+||-+.+...+ .+.+|. |+|.||..||+-|-. ++++||.|++.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 35678999998887765 677786 999999999999954 6789999998774
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.23 E-value=7.6e-07 Score=60.63 Aligned_cols=42 Identities=26% Similarity=0.869 Sum_probs=32.3
Q ss_pred ccccccccccCCCeeeecCCCC-----cccchhhHHHhhcCC--CCccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRN--GSCPVCR 255 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~Cg-----H~FH~~CI~~WL~~~--~sCPvCR 255 (265)
.|.||++ ..+++.....| |. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 33444445678 75 999999999999644 4899995
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.19 E-value=3.8e-07 Score=84.19 Aligned_cols=51 Identities=37% Similarity=0.817 Sum_probs=44.2
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.+.-+.|-||.+.|..+... | |+|.||.-||.+.|..+..||.|+.++.+.
T Consensus 20 lD~lLRC~IC~eyf~ip~it---p-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMIT---P-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hHHHHHHhHHHHHhcCceec---c-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 44568999999999986555 5 999999999999999999999999887643
No 35
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2e-07 Score=64.20 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=40.2
Q ss_pred CcccccccccccCCCeeeecCCCCc-ccchhhHHHhhc-CCCCccccccccccCCCCC
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLT-RNGSCPVCRECVCKDTDTW 265 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH-~FH~~CI~~WL~-~~~sCPvCR~~v~~~~~~~ 265 (265)
+.+|.||+|.-.+...- .||| ..|.+|-.+.++ .+..||+||.++.+.-++|
T Consensus 7 ~dECTICye~pvdsVlY----tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLY----TCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHH----HcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 47999999886664444 5999 689999766555 7889999999997654443
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.14 E-value=8.7e-07 Score=80.38 Aligned_cols=49 Identities=39% Similarity=0.820 Sum_probs=42.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.+..+.|-||-+.+..+... .|||.||.-||...|..+..||+||.+-.
T Consensus 22 LDs~lrC~IC~~~i~ip~~T----tCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 22 LDSMLRCRICDCRISIPCET----TCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhHHHhhhhhheeecceec----ccccchhHHHHHHHhcCCCCCccccccHH
Confidence 34567899999998886666 69999999999999999999999998754
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.3e-06 Score=81.21 Aligned_cols=49 Identities=31% Similarity=0.811 Sum_probs=42.3
Q ss_pred ccCcccccccccccCCCeeeecCCCCc-ccchhhHHHhhcCCCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
+...+|.||+.+-.+ +..|| |.| ..|..|.+...-+++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 446899999998777 67788 999 79999999887788999999999864
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.09 E-value=1.2e-06 Score=83.42 Aligned_cols=49 Identities=37% Similarity=0.986 Sum_probs=39.6
Q ss_pred ccCcccccccccccCCCee-eecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSA-RKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~-r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.+-.+|||||+.+.+.... +.. .|.|.||..|+.+| ...+||+||--..
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~-~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTI-LCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeee-ecccccchHHHhhc--ccCcChhhhhhcC
Confidence 3457999999999886633 334 49999999999999 6789999997554
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.08 E-value=1.1e-06 Score=89.81 Aligned_cols=54 Identities=26% Similarity=0.816 Sum_probs=41.2
Q ss_pred hcccCcccccccccccCCC---eeeecCCCCcccchhhHHHhhcCC--CCccccccccc
Q 024603 206 QLDNEIGCSICLEKFEEGD---SARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 259 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~---~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 259 (265)
+.+.-++|+||+..+..-+ .-.++|.|.|.||..|+.+|++.. .+||+||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4466789999998776211 123466899999999999999854 57999997764
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.05 E-value=1.6e-06 Score=61.90 Aligned_cols=48 Identities=31% Similarity=0.759 Sum_probs=26.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.+.-..|++|.+.+..|..+. .|.|+||..||.+-+. ..||+|+.+.-
T Consensus 4 le~lLrCs~C~~~l~~pv~l~---~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLG---GCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp HHHTTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred HHHhcCCcHHHHHhcCCceec---cCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 455689999999999976542 7999999999988654 34999998764
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.8e-06 Score=78.11 Aligned_cols=52 Identities=38% Similarity=0.862 Sum_probs=41.7
Q ss_pred ccCcccccccccccCCC----eeeecCCCCcccchhhHHHhh--cC-----CCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGD----SARKLPSCGHCFHSECVDKWL--TR-----NGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~----~~r~LP~CgH~FH~~CI~~WL--~~-----~~sCPvCR~~v~ 259 (265)
..+.+|.||++...+.. ....+|+|.|.||..||++|- .+ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999987644 234568899999999999997 44 467999998764
No 42
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.4e-06 Score=80.85 Aligned_cols=51 Identities=31% Similarity=0.678 Sum_probs=42.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 260 (265)
...+..|+|||+-++. .+..+.|.|.||.+||.+-++ ..+.||.||+.+..
T Consensus 40 ~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 4567899999999887 455568999999999999887 45789999998753
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.89 E-value=2.3e-06 Score=77.97 Aligned_cols=55 Identities=31% Similarity=0.689 Sum_probs=44.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----------------------CCCCccccccccccCCC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----------------------RNGSCPVCRECVCKDTD 263 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----------------------~~~sCPvCR~~v~~~~~ 263 (265)
.....|.|||-.|.+++...+++ |.|+||..|+.++|. .+..||+||..+..+.+
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 45678999999999999888888 999999999976653 11249999999876654
No 44
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=5.4e-06 Score=64.37 Aligned_cols=49 Identities=24% Similarity=0.673 Sum_probs=35.9
Q ss_pred CcccccccccccC-------------CCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 210 EIGCSICLEKFEE-------------GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 210 ~~~C~ICle~~~~-------------~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
-+.|+||...+-+ .+-...--.|.|.||..||.+||+.+..||+|.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 4678888755422 111222225999999999999999999999998763
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.4e-05 Score=80.52 Aligned_cols=53 Identities=26% Similarity=0.728 Sum_probs=42.6
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCccccccccccCC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDT 262 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~~ 262 (265)
....-..||.|-..+.+-... +|+|.||..|+.+-+. ++..||.|...+..++
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~----kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVIT----KCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred HHHhceeCCCccCchhhHHHH----hcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 445678999999777773333 8999999999999886 6678999999886554
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.51 E-value=1.9e-05 Score=79.65 Aligned_cols=50 Identities=28% Similarity=0.518 Sum_probs=42.4
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
....|++|+..+.+.......+ |+|+||..|++.|-+...+||+||..+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 3467999999888876665565 9999999999999999999999998654
No 47
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.48 E-value=5e-05 Score=72.77 Aligned_cols=52 Identities=31% Similarity=0.771 Sum_probs=45.0
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.+++..|++|...+.++... . .|||.||..|+.+|+..+..||.||..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchh
Confidence 45678999999999998773 2 5999999999999999999999999877544
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.22 E-value=0.00013 Score=68.91 Aligned_cols=48 Identities=29% Similarity=0.746 Sum_probs=38.3
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcC--CCCccccccccccCC
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPVCRECVCKDT 262 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~--~~sCPvCR~~v~~~~ 262 (265)
.-|-||-+.=++ ++.-| |||..|..|+..|-.. ..+||.||..+...+
T Consensus 370 eLCKICaendKd---vkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAENDKD---VKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhccCCC---ccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 569999776444 66777 9999999999999754 467999999886544
No 49
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.22 E-value=0.00014 Score=51.08 Aligned_cols=43 Identities=33% Similarity=0.790 Sum_probs=29.0
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC--CCCccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--NGSCPV 253 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~--~~sCPv 253 (265)
..+..|||.+..+++|..-+ .|+|+|-.+.|.+|+.+ ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~---~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSK---KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEES---SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcC---CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34689999999999876543 69999999999999944 346998
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00029 Score=67.53 Aligned_cols=49 Identities=33% Similarity=0.844 Sum_probs=42.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..+.+|.||+..+..+... | |||.||..|+++-+.+...||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~pv~t---p-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT---P-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccc---c-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4578999999999887666 5 99999999999988888899999988764
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.99 E-value=0.0002 Score=67.55 Aligned_cols=49 Identities=37% Similarity=0.861 Sum_probs=40.3
Q ss_pred ccCcccccccccccC-CCeeeecCCCCcccchhhHHHhhcCC--CCccccccc
Q 024603 208 DNEIGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~~~-~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~ 257 (265)
+.+..|-.|=+.+-. ++.+.-|| |.|+||..|+...|.++ .+||.||+-
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 446789999888854 56777898 99999999999999765 579999943
No 52
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.99 E-value=0.00031 Score=68.56 Aligned_cols=49 Identities=29% Similarity=0.695 Sum_probs=40.0
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----CCCCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v~ 259 (265)
...+.+|-+|-+.-++.... .|.|.||..|+.++.. .+-+||+|...+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s----~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIES----SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhh----hhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 34568999999998886666 7999999999988875 3357999988764
No 53
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00041 Score=63.33 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=41.5
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..|-||.++|..|... +|+|+||..|..+-+.....|++|.+....
T Consensus 242 f~c~icr~~f~~pVvt----~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVT----KCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhh----cCCceeehhhhccccccCCcceeccccccc
Confidence 5699999999998888 899999999999988888999999987654
No 54
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.76 E-value=0.00035 Score=64.66 Aligned_cols=52 Identities=27% Similarity=0.659 Sum_probs=44.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...-.+|.+|-..+.+...+ +.|-|.||..||.+.+.....||.|...+...
T Consensus 12 ~n~~itC~LC~GYliDATTI---~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTI---TECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecchhH---HHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34568999999999886655 36999999999999999999999999888654
No 55
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00093 Score=62.49 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=41.0
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
..++..|+||+.. +......| |+|.-|+.||.+.+.+.+.|=.|+..+.
T Consensus 419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3567899999765 34455566 9999999999999999999999998876
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.72 E-value=0.00058 Score=59.23 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=39.5
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
..|.||-.+|..|... .|||.||..|..+-++....|-+|-+..
T Consensus 197 F~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhh
Confidence 5799999999998888 7999999999998888889999997653
No 57
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.72 E-value=0.0013 Score=44.56 Aligned_cols=45 Identities=31% Similarity=0.685 Sum_probs=23.1
Q ss_pred cccccccccCC-CeeeecCCCCcccchhhHHHhhc-CCCCcccccccc
Q 024603 213 CSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECV 258 (265)
Q Consensus 213 C~ICle~~~~~-~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v 258 (265)
|++|.+++... ....-. .|++..|..|..+-++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999999432 233334 4899999999999886 578999999874
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.001 Score=60.20 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=40.0
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~~ 260 (265)
...+.+|++|-++-..|... . +|+|+||+.|+..-.... .+||.|-.++.+
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~--~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVI--G-KCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccCCceeeccCCCCCCCeee--c-cccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 34678999998887766555 2 499999999998866544 689999988763
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0013 Score=58.05 Aligned_cols=55 Identities=25% Similarity=0.629 Sum_probs=44.7
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC--------CCCccccccccccCC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--------NGSCPVCRECVCKDT 262 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~--------~~sCPvCR~~v~~~~ 262 (265)
+.+.+..|..|-..+..++.+|. .|-|.||.+|+++|-.. ...||-|.++|.+..
T Consensus 46 DsDY~pNC~LC~t~La~gdt~RL--vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTRL--VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred hcCCCCCCceeCCccccCcceee--hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 45567889999999999988864 39999999999999652 236999999987654
No 60
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=96.68 E-value=0.0016 Score=43.52 Aligned_cols=37 Identities=41% Similarity=0.507 Sum_probs=22.4
Q ss_pred HHhhhHHHHHHHhhhcccccccccccccccccchhhHH
Q 024603 52 FALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAIT 89 (265)
Q Consensus 52 ~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~ 89 (265)
.|+.|+..|+++|++.| ....|-+-||++|+++|+++
T Consensus 6 GA~iGA~~GA~iG~~~g-~~~~GA~iGA~~Ga~~G~~~ 42 (45)
T PF13441_consen 6 GAAIGAAAGAVIGAIIG-NGGKGAAIGAAAGALAGAAI 42 (45)
T ss_pred HHHHHHHHHHHHHHhhC-CCcccchhhhhhhhhhhhhh
Confidence 46677777777777777 33444555555555555443
No 61
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=96.64 E-value=0.0012 Score=52.95 Aligned_cols=41 Identities=34% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHH
Q 024603 51 IFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 51 ~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e 92 (265)
.-+++|+++||++|++.|- ...|.+.||++||+.|++....
T Consensus 54 ~ga~~GA~~GA~~Ga~~G~-~~~ga~~GAa~Ga~~G~~~g~~ 94 (118)
T PF13436_consen 54 GGAAIGAAAGAAIGAIIGG-NGRGAAIGAAAGAAVGAAAGAA 94 (118)
T ss_pred HHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHHHHHHhhhh
Confidence 3455777777777777776 6678888888888888887766
No 62
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.54 E-value=0.0019 Score=69.37 Aligned_cols=66 Identities=27% Similarity=0.551 Sum_probs=47.4
Q ss_pred hcCCcccccchhhhhcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----CC-----CCccccccccc
Q 024603 192 QKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RN-----GSCPVCRECVC 259 (265)
Q Consensus 192 ~~lp~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----~~-----~sCPvCR~~v~ 259 (265)
+-+|....+.+.. +.+.+..|-||+.+--......+|. |+|+||..|.+.-|+ .. -+||+|+.++.
T Consensus 3469 ~CLPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3469 HCLPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccccccChhhh-hcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 3455555443323 5567889999998877767777886 999999999875544 22 25999998874
No 63
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=96.45 E-value=0.0019 Score=43.35 Aligned_cols=38 Identities=34% Similarity=0.434 Sum_probs=23.0
Q ss_pred hhhHHHHHHHhhhcccccccccccccccccchhhHHHHH
Q 024603 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e 92 (265)
+.|+++|+++|+..+ .+..|.+-|+++|++.|+.+...
T Consensus 4 ~iGA~~Ga~iG~~~g-~~~~ga~iGa~vGa~~G~~ig~~ 41 (46)
T PF13488_consen 4 AIGAAAGAAIGAATG-GPGKGAAIGAAVGAAVGAAIGNY 41 (46)
T ss_pred HHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555444 23467777777777777776654
No 64
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0034 Score=59.77 Aligned_cols=47 Identities=28% Similarity=0.617 Sum_probs=38.4
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC--------CCCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--------NGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~--------~~sCPvCR~ 256 (265)
....|.||++.....+-...+| |+|+||..|+..++.. .-.||-+.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4578999999988878888999 9999999999998762 235876653
No 65
>PHA02862 5L protein; Provisional
Probab=96.27 E-value=0.0031 Score=52.14 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=33.6
Q ss_pred CcccccccccccCCCeeeecC-CC---CcccchhhHHHhhcC--CCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLP-SC---GHCFHSECVDKWLTR--NGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP-~C---gH~FH~~CI~~WL~~--~~sCPvCR~~v~ 259 (265)
+..|-||.++-.+. . -| .| -..-|.+|+.+|+.. +..||+||.+..
T Consensus 2 ~diCWIC~~~~~e~--~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER--N--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC--c--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 45799999985443 2 34 23 357999999999974 456999998763
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0025 Score=59.10 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=39.9
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
..+...||+|+....++..+. .-|-+||..|+.+.++.++.||+=-.+.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345689999999988876653 3699999999999999999999855443
No 67
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.16 E-value=0.0026 Score=65.28 Aligned_cols=52 Identities=29% Similarity=0.735 Sum_probs=41.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-------CCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-------GSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-------~sCPvCR~~v~ 259 (265)
....+|.||.+.+.....+-....|-|+||..||.+|-+.. =.||.|+....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34579999999999887777777799999999999997632 14999985444
No 68
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0042 Score=55.58 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=47.8
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
....||+|.+.+.+......|.+|||+|+.+|..+.+.....||+|-+++.+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 457899999999998888778789999999999999999999999998886543
No 69
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=96.15 E-value=0.0032 Score=42.00 Aligned_cols=38 Identities=37% Similarity=0.501 Sum_probs=34.1
Q ss_pred hhhHHHHHHHhhhcccccccccccccccccchhhHHHHH
Q 024603 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e 92 (265)
.-|+.+||.+||+.|.... .--+||.+||.+|++...-
T Consensus 4 ~~GA~iGA~~GA~iG~~~g-~~~~GA~iGA~~Ga~~G~~ 41 (45)
T PF13441_consen 4 VRGAAIGAAAGAVIGAIIG-NGGKGAAIGAAAGALAGAA 41 (45)
T ss_pred hhHHHHHHHHHHHHHHhhC-CCcccchhhhhhhhhhhhh
Confidence 5699999999999999998 7789999999999998754
No 70
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=96.07 E-value=0.0021 Score=42.33 Aligned_cols=37 Identities=43% Similarity=0.616 Sum_probs=26.2
Q ss_pred hHHHHHHHhhhcccc--cccccccccccccchhhHHHHH
Q 024603 56 GAIVGTIFGAMKGQT--TETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 56 g~~~ga~~g~~~g~~--~~~g~~~ga~~Ga~~gav~s~e 92 (265)
|+++|+++|++.|.. .+++-..|+.+||+.||++..+
T Consensus 2 G~~~Ga~~Ga~~G~~ig~~~g~~~g~~~Ga~~Ga~~G~~ 40 (42)
T PF05433_consen 2 GALIGAAVGAVAGSQIGGGNGRTLGAVAGAVAGALIGNQ 40 (42)
T ss_pred chHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhh
Confidence 455555555555554 3678888999999999998765
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.001 Score=60.76 Aligned_cols=43 Identities=28% Similarity=0.810 Sum_probs=33.1
Q ss_pred CcccccccccccCCCeeeecCCCCc-ccchhhHHHhhcCCCCcccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
+.-|.||++...+ ...|+ ||| .-|..|-... ..||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHHH
Confidence 5679999887555 66776 999 6788886543 489999998764
No 72
>PHA03096 p28-like protein; Provisional
Probab=96.02 E-value=0.0029 Score=58.21 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=29.6
Q ss_pred cccccccccccCCC----eeeecCCCCcccchhhHHHhhc
Q 024603 211 IGCSICLEKFEEGD----SARKLPSCGHCFHSECVDKWLT 246 (265)
Q Consensus 211 ~~C~ICle~~~~~~----~~r~LP~CgH~FH~~CI~~WL~ 246 (265)
-.|.||++...... .-..||.|.|.||..|+..|..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 68999999887532 3345889999999999999976
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0028 Score=59.47 Aligned_cols=47 Identities=32% Similarity=0.632 Sum_probs=33.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
......|.||++...+ ...+| |||.-| |..-- +...+||+||+.+..
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 3456789999998777 55566 999866 54432 234559999998754
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.90 E-value=0.0036 Score=48.26 Aligned_cols=34 Identities=26% Similarity=0.740 Sum_probs=27.8
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHH
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVD 242 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~ 242 (265)
..++..|++|-..+.. ......| |||.||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 3556789999999988 4555678 99999999975
No 75
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.67 E-value=0.0082 Score=50.43 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=35.3
Q ss_pred cccCcccccccccccCCCeeeecC-CCCc---ccchhhHHHhhcCC--CCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLP-SCGH---CFHSECVDKWLTRN--GSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP-~CgH---~FH~~CI~~WL~~~--~sCPvCR~~v~ 259 (265)
...+..|-||.++-.+ .. -| .|.. .-|.+|+.+|+..+ .+||+|+.+..
T Consensus 5 s~~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3456799999988542 22 24 3555 56999999999854 56999998763
No 76
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=95.65 E-value=0.01 Score=52.62 Aligned_cols=42 Identities=31% Similarity=0.355 Sum_probs=29.0
Q ss_pred HHhhhHHHHHHHhhhcccc--cccccccccccccchhhHHHHHH
Q 024603 52 FALGGAIVGTIFGAMKGQT--TETGFLHGAGIGAVAGAITALQL 93 (265)
Q Consensus 52 ~~~~g~~~ga~~g~~~g~~--~~~g~~~ga~~Ga~~gav~s~e~ 93 (265)
-|++|+++||++|++.|=. ...|-+-||++|+.+||.+.+..
T Consensus 38 ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~g~~~ 81 (219)
T PRK10510 38 GAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYM 81 (219)
T ss_pred hhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhhhhhh
Confidence 4556777777777776621 23477888888888888887664
No 77
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.63 E-value=0.0088 Score=40.20 Aligned_cols=41 Identities=37% Similarity=0.977 Sum_probs=26.9
Q ss_pred cccccccccCCCeeeecC-CCC---cccchhhHHHhhc--CCCCcccc
Q 024603 213 CSICLEKFEEGDSARKLP-SCG---HCFHSECVDKWLT--RNGSCPVC 254 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP-~Cg---H~FH~~CI~~WL~--~~~sCPvC 254 (265)
|-||+++-.+.. ....| .|. ...|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999887766 23355 243 3789999999998 45679988
No 78
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.0064 Score=51.25 Aligned_cols=41 Identities=34% Similarity=0.776 Sum_probs=32.2
Q ss_pred CcccccchhhhhcccCcccccccccccCCCeeeecCCCCcccch
Q 024603 195 PECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHS 238 (265)
Q Consensus 195 p~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~ 238 (265)
|...++++ .-.++.-+|.|||||+..++.+.+|| |--+||+
T Consensus 164 PrlsYNdD--VL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDD--VLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccc--hhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 55555443 23455689999999999999999999 9999985
No 79
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=95.33 E-value=0.0086 Score=40.19 Aligned_cols=38 Identities=39% Similarity=0.506 Sum_probs=32.4
Q ss_pred hhHHHHHHHhhhcccccccccccccccccchhhHHHHHH
Q 024603 55 GGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQL 93 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~ 93 (265)
.|+.+||++|+++|..+. +=..|+.+||..|+++..-+
T Consensus 1 ~Ga~iGA~~Ga~iG~~~g-~~~~ga~iGa~vGa~~G~~i 38 (46)
T PF13488_consen 1 IGAAIGAAAGAAIGAATG-GPGKGAAIGAAVGAAVGAAI 38 (46)
T ss_pred CcHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHH
Confidence 489999999999999986 56889999999999887663
No 80
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=95.29 E-value=0.0097 Score=47.78 Aligned_cols=41 Identities=37% Similarity=0.412 Sum_probs=31.8
Q ss_pred HHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHH
Q 024603 51 IFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 51 ~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e 92 (265)
-=+..|+++||++||+.|...+. --+|+++||.+||++...
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~-~~~ga~~GAa~Ga~~G~~ 90 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGG-NGRGAAIGAAAGAAVGAA 90 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCC-CccchHHHHHHHHHHHHH
Confidence 34677888888888888887766 677888888888888665
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.0083 Score=61.70 Aligned_cols=43 Identities=26% Similarity=0.703 Sum_probs=34.0
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
...|..|--+++-|..- . .|||.||.+|+. .....||-|+...
T Consensus 840 ~skCs~C~~~LdlP~Vh--F-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVH--F-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceee--e-ecccHHHHHhhc---cCcccCCccchhh
Confidence 36899998888876433 2 499999999998 4667899999744
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.18 E-value=0.013 Score=54.96 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=37.6
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHh--hcCCCCccccccc
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW--LTRNGSCPVCREC 257 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W--L~~~~sCPvCR~~ 257 (265)
..+++..|-||-+.+.- ...+| |+|..|.-|..+. |-.++.||+||..
T Consensus 57 tDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 57 TDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 45567889999887665 45677 9999999998654 4577899999974
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.18 E-value=0.0052 Score=56.16 Aligned_cols=51 Identities=31% Similarity=0.687 Sum_probs=40.7
Q ss_pred CcccccccccccCCCe-eeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 210 EIGCSICLEKFEEGDS-ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~-~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
...||||.+.+..... +..+| |||..|..|.......+-+||+|.+ +.+..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHHHH
Confidence 4559999999887654 44565 9999999999999888899999998 54443
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.18 E-value=0.011 Score=41.10 Aligned_cols=47 Identities=32% Similarity=0.627 Sum_probs=32.5
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
...|-.|... +.+-..+| |+|..|..|.+-+ +-+.||+|-+++...+
T Consensus 7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence 3445555333 23344566 9999999997664 6788999999987554
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.01 Score=50.86 Aligned_cols=50 Identities=30% Similarity=0.751 Sum_probs=33.3
Q ss_pred CcccccccccccCCCeee---ecCCCCcccchhhHHHhhcC-----C------CCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSAR---KLPSCGHCFHSECVDKWLTR-----N------GSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r---~LP~CgH~FH~~CI~~WL~~-----~------~sCPvCR~~v~ 259 (265)
...|.||+..--++...- ---+||.-||.-|+..||+. + ..||.|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 345777765544432211 11169999999999999972 1 24999999875
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.83 E-value=0.016 Score=54.13 Aligned_cols=56 Identities=27% Similarity=0.574 Sum_probs=39.9
Q ss_pred cCcccccccccccCCCeee-ecCCCCcccchhhHHHhhc-CCCCccccccccccCCCCC
Q 024603 209 NEIGCSICLEKFEEGDSAR-KLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDTDTW 265 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r-~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~~~~~ 265 (265)
++..||.|++++...++-- -+| ||...|.-|...--. -+..||-||+...+++-.|
T Consensus 13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~ 70 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRY 70 (480)
T ss_pred ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccceeE
Confidence 4456999999998765432 354 999888888655322 3578999999887665544
No 87
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.83 E-value=0.015 Score=47.66 Aligned_cols=38 Identities=21% Similarity=0.717 Sum_probs=29.7
Q ss_pred CcccccccccccCCCeeeecCCCC------cccchhhHHHhhcCC
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCG------HCFHSECVDKWLTRN 248 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~Cg------H~FH~~CI~~WL~~~ 248 (265)
..+|.||++.+.+..-+..++ |+ |.||.+|+.+|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 679999999999855555555 65 899999999994433
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.63 E-value=0.02 Score=53.14 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=36.9
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
.+-.+||||.+.+..|..- . .=||.-|..|-.+ ....||.||.++.+
T Consensus 46 ~~lleCPvC~~~l~~Pi~Q--C-~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQ--C-DNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccccee--c-CCCcEehhhhhhh---hcccCCcccccccc
Confidence 4568999999999987655 1 1379999999753 57789999998863
No 89
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.61 E-value=0.019 Score=52.91 Aligned_cols=43 Identities=30% Similarity=0.781 Sum_probs=35.6
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCcccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRE 256 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~ 256 (265)
+.|+.|-.-+.++.+. |.|+|.||.+||..-|. ....||.|.+
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899998888876554 68999999999987655 5678999976
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.31 E-value=0.03 Score=36.91 Aligned_cols=41 Identities=27% Similarity=0.814 Sum_probs=24.0
Q ss_pred cccccccccCCCeeeecCCCCcccchhhHHHhhcCCC--Ccccc
Q 024603 213 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG--SCPVC 254 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~--sCPvC 254 (265)
|.+|.+....+..-... .|+=.+|..|+.+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66787777776655322 4999999999999998765 79987
No 91
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.29 E-value=0.041 Score=49.86 Aligned_cols=54 Identities=19% Similarity=0.492 Sum_probs=41.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
......|||...++........+-.|||+|...++.+- .....||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 34568999999999665555555459999999999987 2356799999887643
No 92
>PRK10540 lipoprotein; Provisional
Probab=93.65 E-value=0.091 Score=38.62 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=23.3
Q ss_pred hhhHHHHHHHhhhcccccccccccccccccchhhHHHHHH
Q 024603 54 LGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQL 93 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~ 93 (265)
..|+..|+++|++.|. |-..|+.+||+.|+++..++
T Consensus 35 ~~Ga~~Ga~~Ga~~g~----g~~~g~~~Ga~~G~~~G~~v 70 (72)
T PRK10540 35 AIGAGAGALGGAVLTD----GSTLGTLGGAAVGGVIGHQV 70 (72)
T ss_pred HHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhHhh
Confidence 3466666666666653 33367777888888777653
No 93
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.006 Score=57.77 Aligned_cols=51 Identities=31% Similarity=0.677 Sum_probs=42.5
Q ss_pred CcccccccccccCC-CeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 210 EIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 210 ~~~C~ICle~~~~~-~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...|+||.+.+... +.+..+ .|||.+|..|+.+||.....||.||+.+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 46899999999876 444444 4999999999999999999999999988643
No 94
>PRK11280 hypothetical protein; Provisional
Probab=93.00 E-value=0.054 Score=46.18 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=28.1
Q ss_pred hhHHHHHHHhhhcccccc--cccccccccccchhhHHHHHHHh
Q 024603 55 GGAIVGTIFGAMKGQTTE--TGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~~~~--~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
.|+++||++|++.|..-+ +|=.-++++||++||++..++=+
T Consensus 66 ~Gtv~Gav~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i~~ 108 (170)
T PRK11280 66 AGSVLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQIQG 108 (170)
T ss_pred hhHHHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777776543 34344677888888888877433
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.039 Score=51.03 Aligned_cols=45 Identities=31% Similarity=0.722 Sum_probs=31.4
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
-.|--| ++....--|..| |.|.||.+|... ...+.||.|-..|..
T Consensus 91 HfCd~C--d~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRC--DFPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQR 135 (389)
T ss_pred Eeeccc--CCcceeeecccc-cchhhhhhhhhc--CccccCcCcccHHHH
Confidence 345555 333334457788 999999999864 345689999887754
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.07 Score=46.95 Aligned_cols=41 Identities=32% Similarity=0.783 Sum_probs=30.8
Q ss_pred cccccccccCCCeeeecCCCCc-ccchhhHHHhhcCCCCccccccccccC
Q 024603 213 CSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH-~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
|-.|-+. +..+..+| |.| .+|..|-.. -..||+|+.+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhce
Confidence 8788554 55588898 988 899999654 45699999876544
No 97
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.60 E-value=0.081 Score=43.25 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=40.8
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc---CCCCccccccccccCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRECVCKDT 262 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~---~~~sCPvCR~~v~~~~ 262 (265)
.-.+|-||.|.-.+...+.--.-||-..|..|....++ .++.||+|+.+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 45789999988777555533335999999999876655 5678999999887654
No 98
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.29 E-value=0.07 Score=35.98 Aligned_cols=31 Identities=26% Similarity=0.731 Sum_probs=22.5
Q ss_pred CC-CcccchhhHHHhhcCCCCccccccccccC
Q 024603 231 SC-GHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 231 ~C-gH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.| .|+.|..|+...+.....||+|..+++..
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 46 59999999999999999999999998754
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.27 E-value=0.052 Score=58.27 Aligned_cols=48 Identities=33% Similarity=0.870 Sum_probs=39.9
Q ss_pred hcccCccccccccccc-CCCeeeecCCCCcccchhhHHHhhcCCCCccccccc
Q 024603 206 QLDNEIGCSICLEKFE-EGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~-~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
+......|.||++.+. .+-.. .|||.+|..|...|+..+..||.|+..
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~----~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIA----GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCee----eechhHhhhHHHHHHHHhccCcchhhh
Confidence 3445568999999998 44444 699999999999999999999999843
No 100
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.20 E-value=0.063 Score=54.99 Aligned_cols=44 Identities=32% Similarity=0.785 Sum_probs=33.7
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 259 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 259 (265)
..|.||++ ... .... .|+|.||.+|+.+-+... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~---~~it-~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDS---FFIT-RCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-ccc---ceee-cccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 333 3334 499999999999887643 35999998764
No 101
>PRK10540 lipoprotein; Provisional
Probab=92.08 E-value=0.17 Score=37.16 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=5.1
Q ss_pred hHHHHHHHhhhcc
Q 024603 56 GAIVGTIFGAMKG 68 (265)
Q Consensus 56 g~~~ga~~g~~~g 68 (265)
|+++||++|++.|
T Consensus 55 g~~~Ga~~G~~~G 67 (72)
T PRK10540 55 GTLGGAAVGGVIG 67 (72)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444443333
No 102
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=91.52 E-value=0.079 Score=47.66 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=10.0
Q ss_pred cccccccchhhHHHHH
Q 024603 77 HGAGIGAVAGAITALQ 92 (265)
Q Consensus 77 ~ga~~Ga~~gav~s~e 92 (265)
-|+.+|++.|++++.+
T Consensus 61 ~G~~~G~~~G~~~g~~ 76 (239)
T TIGR03789 61 VGAIIGGITGGLIGQA 76 (239)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3666666666666655
No 103
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.057 Score=54.30 Aligned_cols=45 Identities=31% Similarity=0.589 Sum_probs=33.4
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
+-..|+||+..|......-+-+.|||+.|..|+... .+.+|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 346899998888765544444479999999999886 466788 554
No 104
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.48 E-value=0.06 Score=54.72 Aligned_cols=50 Identities=28% Similarity=0.683 Sum_probs=40.3
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC---CCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN---GSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~---~sCPvCR~~v~~~ 261 (265)
....+|+||.+.+.++..+ +|.|.||..|+..-+... ..||+|+..+.+.
T Consensus 19 ~k~lEc~ic~~~~~~p~~~----kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLL----KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEeeccchh----hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 3468999999999998555 799999999998766644 4699999777543
No 105
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=0.13 Score=49.29 Aligned_cols=30 Identities=40% Similarity=1.048 Sum_probs=23.8
Q ss_pred cCCCCcccchhhHHHhhcCC--CCcccccccc
Q 024603 229 LPSCGHCFHSECVDKWLTRN--GSCPVCRECV 258 (265)
Q Consensus 229 LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v 258 (265)
-|.|||.|-.+||++||.+. ..||.|....
T Consensus 24 sl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 24 SLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred eecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 34699999999999999522 3599998654
No 106
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.08 E-value=0.28 Score=46.65 Aligned_cols=29 Identities=34% Similarity=0.984 Sum_probs=20.4
Q ss_pred CCcccchhhHHHhhc-------------CCCCcccccccccc
Q 024603 232 CGHCFHSECVDKWLT-------------RNGSCPVCRECVCK 260 (265)
Q Consensus 232 CgH~FH~~CI~~WL~-------------~~~sCPvCR~~v~~ 260 (265)
|...-|.+|+.+|+. ++-.||+||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 344557889988875 33459999998653
No 107
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=90.81 E-value=0.26 Score=34.18 Aligned_cols=41 Identities=34% Similarity=0.852 Sum_probs=33.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPV 253 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPv 253 (265)
....|++|-+.|.+++.+.+.|.|+--+|.+|.++ ...|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 45689999999998888889999999999999754 455544
No 108
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.51 E-value=0.086 Score=47.24 Aligned_cols=50 Identities=24% Similarity=0.565 Sum_probs=37.3
Q ss_pred cCccccccccccc-CC-CeeeecCCCCcccchhhHHHhhcCC-CCcc--cccccc
Q 024603 209 NEIGCSICLEKFE-EG-DSARKLPSCGHCFHSECVDKWLTRN-GSCP--VCRECV 258 (265)
Q Consensus 209 ~~~~C~ICle~~~-~~-~~~r~LP~CgH~FH~~CI~~WL~~~-~sCP--vCR~~v 258 (265)
.+..||||..|.- .| ..+..-|.|-|..|.+|+++-+... ..|| -|-+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3568999987753 33 3455567799999999999998754 5799 776544
No 109
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.29 E-value=0.13 Score=53.59 Aligned_cols=37 Identities=30% Similarity=0.763 Sum_probs=28.7
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhh
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL 245 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL 245 (265)
.+.+++|.+|...+... .-...| |||.||.+|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 45678999999888764 344566 99999999997543
No 110
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.99 E-value=0.34 Score=40.79 Aligned_cols=38 Identities=24% Similarity=0.556 Sum_probs=23.3
Q ss_pred cCcccccccccccCCCeeeecC---C-----CCc-ccchhhHHHhhc
Q 024603 209 NEIGCSICLEKFEEGDSARKLP---S-----CGH-CFHSECVDKWLT 246 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP---~-----CgH-~FH~~CI~~WL~ 246 (265)
++..||||||.-.+...+.--. + |+- .-|..|+++.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 3568999999877654442100 1 443 346789987643
No 111
>COG4803 Predicted membrane protein [Function unknown]
Probab=88.55 E-value=0.058 Score=45.01 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=9.4
Q ss_pred ccccccccccchhhHHHHH
Q 024603 74 GFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 74 g~~~ga~~Ga~~gav~s~e 92 (265)
|+.-||+.||++|++.-+.
T Consensus 82 G~avGAa~GAl~g~l~DvG 100 (170)
T COG4803 82 GMAVGAASGALSGSLTDVG 100 (170)
T ss_pred HHHHHHhhhhhccceeecC
Confidence 4444455555555554443
No 112
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=87.98 E-value=0.53 Score=32.27 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=22.5
Q ss_pred cccccccccCC------CeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 213 CSICLEKFEEG------DSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 213 C~ICle~~~~~------~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
|--|+..+..+ ......|+|++.||.+|=.---+.=..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 45566666664 34667889999999999433222335799884
No 113
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=87.93 E-value=0.15 Score=39.91 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=5.8
Q ss_pred ccccccccchhhH
Q 024603 76 LHGAGIGAVAGAI 88 (265)
Q Consensus 76 ~~ga~~Ga~~gav 88 (265)
+=||+.||++|++
T Consensus 23 ~~GA~~Gal~G~l 35 (102)
T PF06897_consen 23 AVGAAAGALAGAL 35 (102)
T ss_pred HHHHHHHHHHhHH
Confidence 4444444444443
No 114
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.73 E-value=0.24 Score=33.63 Aligned_cols=43 Identities=19% Similarity=0.552 Sum_probs=20.7
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-----CCccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 257 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-----~sCPvCR~~ 257 (265)
+.|+|....+..|.+. . .|.|.-|.+ ++.|+... -.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg--~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRG--K-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEE--T-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccC--C-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5788888888775544 3 599976544 34555422 359999874
No 115
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.68 E-value=0.21 Score=45.21 Aligned_cols=52 Identities=29% Similarity=0.661 Sum_probs=36.7
Q ss_pred cccCcccccccccccCCCee-eecCCC-----CcccchhhHHHhhcCC--------CCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSA-RKLPSC-----GHCFHSECVDKWLTRN--------GSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~-r~LP~C-----gH~FH~~CI~~WL~~~--------~sCPvCR~~v~ 259 (265)
.+.+..|-||+..=++.... -+-| | .|..|..|+..|+..+ -+||.|+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34567899999876665433 2234 5 4899999999998633 24999998653
No 116
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=0.24 Score=47.50 Aligned_cols=37 Identities=30% Similarity=0.669 Sum_probs=27.8
Q ss_pred cCcccccccccccCC-CeeeecCCCCcccchhhHHHhhc
Q 024603 209 NEIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLT 246 (265)
Q Consensus 209 ~~~~C~ICle~~~~~-~~~r~LP~CgH~FH~~CI~~WL~ 246 (265)
...+|.||..+...+ .... ...|+|.||.+|..+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhh
Confidence 467999999555444 4444 446999999999998876
No 117
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.4 Score=45.81 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=39.5
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC---CCccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN---GSCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~---~sCPvCR~~ 257 (265)
....|||=.+.-.+.....+|+ |||+.+.+-+++.-+.. ..||.|=..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 4478999988888888888887 99999999999987654 369999543
No 118
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=0.4 Score=43.86 Aligned_cols=32 Identities=41% Similarity=0.858 Sum_probs=25.2
Q ss_pred eeecCCCCcccchhhHHHhhcCC-CCcccccccc
Q 024603 226 ARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECV 258 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~WL~~~-~sCPvCR~~v 258 (265)
.|.| +|||.+|..|+.+.+... ..||.||.+.
T Consensus 22 p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 22 PRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred Cccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 3444 599999999998887654 4699999984
No 119
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.02 E-value=0.44 Score=43.43 Aligned_cols=49 Identities=31% Similarity=0.732 Sum_probs=35.3
Q ss_pred CcccccccccccCCCe-eeecCCCC-----cccchhhHHHhhc--CCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDS-ARKLPSCG-----HCFHSECVDKWLT--RNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~-~r~LP~Cg-----H~FH~~CI~~WL~--~~~sCPvCR~~v~ 259 (265)
+..|-||.++...... ....| |. +..|..|+.+|+. ....|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4789999997765431 23344 53 6789999999998 4567999987553
No 120
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=0.34 Score=44.48 Aligned_cols=36 Identities=22% Similarity=0.625 Sum_probs=30.9
Q ss_pred cCcccccccccccCCCeeeecCCC----CcccchhhHHHhhcCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSC----GHCFHSECVDKWLTRN 248 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~C----gH~FH~~CI~~WL~~~ 248 (265)
..+.|.+|.|.+++...+ +| .|.||..|-++-++.+
T Consensus 267 apLcCTLC~ERLEDTHFV----QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV----QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCcee----ecCCCcccceecccCHHHHHhh
Confidence 348999999999998777 56 6999999999988855
No 121
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=85.28 E-value=0.34 Score=31.86 Aligned_cols=33 Identities=39% Similarity=0.557 Sum_probs=17.2
Q ss_pred hhhHHHHHHHhhhc--ccccccccccccccccchh
Q 024603 54 LGGAIVGTIFGAMK--GQTTETGFLHGAGIGAVAG 86 (265)
Q Consensus 54 ~~g~~~ga~~g~~~--g~~~~~g~~~ga~~Ga~~g 86 (265)
++|+++|+++|... +--.-.|.+=|+.+|++.|
T Consensus 4 ~~Ga~~Ga~~G~~ig~~~g~~~g~~~Ga~~Ga~~G 38 (42)
T PF05433_consen 4 LIGAAVGAVAGSQIGGGNGRTLGAVAGAVAGALIG 38 (42)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 34555555555444 4445555555555555554
No 122
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=84.95 E-value=0.88 Score=35.61 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=15.8
Q ss_pred hhHHHHHHHhhhccccccccccc
Q 024603 55 GGAIVGTIFGAMKGQTTETGFLH 77 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~~~~~g~~~ 77 (265)
+|+++||.+||+.|-.++.|+=+
T Consensus 20 ~G~~~GA~~Gal~G~l~d~gI~d 42 (102)
T PF06897_consen 20 LGAAVGAAAGALAGALSDYGIDD 42 (102)
T ss_pred HHHHHHHHHHHHHhHHhhCCCCH
Confidence 67777777777777766666544
No 123
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=84.82 E-value=0.46 Score=27.98 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=15.3
Q ss_pred ccccccccccCCCeeeecCCCCccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCF 236 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~F 236 (265)
.||-|...+. ...+..|.|||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 4777776653 3455577888877
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.15 E-value=0.78 Score=47.18 Aligned_cols=41 Identities=20% Similarity=0.491 Sum_probs=31.2
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPV 253 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPv 253 (265)
-.|.+|-..+.. .....+.|+|.-|.+|+.+|+..+..||.
T Consensus 780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 468888555433 23346689999999999999998888876
No 125
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=83.36 E-value=4.7 Score=42.18 Aligned_cols=55 Identities=18% Similarity=0.414 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHh-----hhHHHHHHHhhhcccccc---------------ccccccccc-ccchhhHHHHHHH
Q 024603 40 MKRVLYAALTCIFAL-----GGAIVGTIFGAMKGQTTE---------------TGFLHGAGI-GAVAGAITALQLL 94 (265)
Q Consensus 40 ~~~~~~~~~~~~~~~-----~g~~~ga~~g~~~g~~~~---------------~g~~~ga~~-Ga~~gav~s~e~~ 94 (265)
++++++..+..+||. +||.+|+++|.+.|.++. .|++|..+. |...|=+++.-++
T Consensus 177 l~~il~~~~vl~~a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il 252 (764)
T TIGR02865 177 LENIIARLAVLLISYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLIL 252 (764)
T ss_pred HHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHH
Confidence 455666666666663 367777777777777643 344454454 5555555555333
No 126
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.13 E-value=1.3 Score=35.23 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=35.0
Q ss_pred CcccccccccccCC----------CeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 210 EIGCSICLEKFEEG----------DSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 210 ~~~C~ICle~~~~~----------~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
...|--|+..|.++ ......|+|++.||.+|-.-+-+.=..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999988653 12345778999999999777766667899996
No 127
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.07 E-value=2.8 Score=37.97 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=38.5
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
....|||=--++........+-.|||+|-..-+.+- ....|++|...+..++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 346799887777766555445569999998877664 4678999999876543
No 128
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.09 E-value=0.77 Score=47.32 Aligned_cols=23 Identities=35% Similarity=1.054 Sum_probs=21.4
Q ss_pred CCCcccchhhHHHhhcCCCCccc
Q 024603 231 SCGHCFHSECVDKWLTRNGSCPV 253 (265)
Q Consensus 231 ~CgH~FH~~CI~~WL~~~~sCPv 253 (265)
.|+|..|.+|...|++....||-
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 59999999999999999999984
No 130
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.72 E-value=0.95 Score=47.01 Aligned_cols=51 Identities=24% Similarity=0.618 Sum_probs=36.3
Q ss_pred ccCcccccccccccCCCeeeecC-CCC---cccchhhHHHhhcCC--CCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLP-SCG---HCFHSECVDKWLTRN--GSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP-~Cg---H~FH~~CI~~WL~~~--~sCPvCR~~v~ 259 (265)
+++..|-||..+=..++.+- -| +|. ...|.+|+-+|+... ..|-+|+.+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 44589999987655544442 23 343 468999999999854 46999998764
No 131
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=81.49 E-value=0.6 Score=31.07 Aligned_cols=44 Identities=27% Similarity=0.647 Sum_probs=29.9
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhc------CCCCcccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRE 256 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~------~~~sCPvCR~ 256 (265)
.|.||.+. .+...+.....|+..||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~-~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS-DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS-CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc-CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 38899883 33444555667999999999864332 2346998874
No 132
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.22 E-value=0.66 Score=42.81 Aligned_cols=28 Identities=25% Similarity=0.847 Sum_probs=21.7
Q ss_pred CCcccchhhHHHhhc-------------CCCCccccccccc
Q 024603 232 CGHCFHSECVDKWLT-------------RNGSCPVCRECVC 259 (265)
Q Consensus 232 CgH~FH~~CI~~WL~-------------~~~sCPvCR~~v~ 259 (265)
|...-|.+|+.+|+. ++-+||+||++..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 566778899988764 4557999999765
No 133
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=80.98 E-value=1 Score=39.93 Aligned_cols=36 Identities=39% Similarity=0.589 Sum_probs=19.1
Q ss_pred hhHHHHHHHhhhcccccccccccccccc-cchhhHHHHH
Q 024603 55 GGAIVGTIFGAMKGQTTETGFLHGAGIG-AVAGAITALQ 92 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~~~~~g~~~ga~~G-a~~gav~s~e 92 (265)
+|++.||.+|+..|-.+ +=-+|+++| .++||+++.-
T Consensus 88 gga~~Ga~~G~~~g~~~--~~~~g~~~G~GlaGalig~~ 124 (215)
T PF05818_consen 88 GGALAGAATGAAIGAYN--SGSAGAAIGAGLAGALIGMI 124 (215)
T ss_pred hhHHHHhHHhhhhcccc--CCccchhhhhhHHHhHHHHH
Confidence 45555555665555232 223455555 5666665554
No 134
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.82 E-value=0.74 Score=46.05 Aligned_cols=47 Identities=36% Similarity=0.882 Sum_probs=38.1
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
+....|.+|+++. ..+..| |. |..|+.+|+..+..||+|+..+..++
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 3457899999998 455555 88 89999999999999999998876443
No 135
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=80.72 E-value=0.81 Score=40.52 Aligned_cols=40 Identities=35% Similarity=0.311 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhhcccccccc--cccccccccchhhHHHHHHH
Q 024603 55 GGAIVGTIFGAMKGQTTETG--FLHGAGIGAVAGAITALQLL 94 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~~~~~g--~~~ga~~Ga~~gav~s~e~~ 94 (265)
.|+.+||++||++|..++.. --.||++||..||.+.--+=
T Consensus 37 ~ga~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G~~~G~~~g 78 (219)
T PRK10510 37 IGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVG 78 (219)
T ss_pred hhhHHHHHHHHHHHhhhcCCCcccchhhhHhHHHhhhhhhhh
Confidence 48999999999999887642 34678888888887776543
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=80.54 E-value=1.3 Score=41.40 Aligned_cols=51 Identities=31% Similarity=0.654 Sum_probs=38.8
Q ss_pred CcccccccccccCCCeeeecC-CCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 210 EIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP-~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...|+||.++....+.. .+| .|+|..|..|...-...+.+||.||++....
T Consensus 249 ~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 37899999987433222 233 4899999999999888999999999876543
No 137
>PLN02720 complex II
Probab=79.82 E-value=1.4 Score=35.94 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcccc-ccc--ccccccccccchhhHHHHHHHhh
Q 024603 32 GTGVLIRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQT-TET--GFLHGAGIGAVAGAITALQLLES 96 (265)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ga~~g~~~g~~-~~~--g~~~ga~~Ga~~gav~s~e~~~~ 96 (265)
+-|---|.++... -||++|+++||+-=|-.... +.+ |.+--.+-|++-|..++-|+.|.
T Consensus 54 VyGPqLk~~rea~------~fa~~Ga~vGa~~tag~a~kysk~phga~lsfl~G~~~G~~~G~EvAnh 115 (140)
T PLN02720 54 VYGPQLKTMREAA------TFAVTGAAVGAVSTAGVAWKYSKSPHGAALAFLGGGVFGWAFGQEVANH 115 (140)
T ss_pred CcchHHHHHHHHH------HHHhhhhhhhhhhhhHHHHHhhcCCchHHHHHhccchhhhhHhHHHHHH
Confidence 4455555555533 47889999999854433332 332 33333344777778888887773
No 138
>PRK10457 hypothetical protein; Provisional
Probab=78.85 E-value=3.6 Score=30.94 Aligned_cols=51 Identities=31% Similarity=0.378 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHHh
Q 024603 45 YAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 45 ~~~~~~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
.-..|.+..++|+++|..++.+-|....+|+--+.-+.|+.||++-+-+..
T Consensus 28 G~~~tiilGiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAiill~i~~ 78 (82)
T PRK10457 28 GFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYR 78 (82)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999988777765566644567789999988776544
No 139
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.98 E-value=1.1 Score=46.34 Aligned_cols=51 Identities=14% Similarity=0.295 Sum_probs=35.5
Q ss_pred ccCcccccccccccCCCe-eeecC--CCCcccchhhHHHhhcC------CCCcccccccc
Q 024603 208 DNEIGCSICLEKFEEGDS-ARKLP--SCGHCFHSECVDKWLTR------NGSCPVCRECV 258 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~-~r~LP--~CgH~FH~~CI~~WL~~------~~sCPvCR~~v 258 (265)
.+..+|.+|.-++.+++. .-.+| .|+|.||..||.+|..+ +-.||+|...+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 445678888777776332 22232 69999999999999752 33589997655
No 140
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=76.98 E-value=1.5 Score=31.10 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=22.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 246 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~ 246 (265)
.+...|.+|...|.--..-.....||++||.+|......
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 456789999999976665566668999999999876653
No 141
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.93 E-value=2.1 Score=37.36 Aligned_cols=43 Identities=30% Similarity=0.744 Sum_probs=31.3
Q ss_pred cCccccccccc-cc---CCCeeeecCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 209 NEIGCSICLEK-FE---EGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~-~~---~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
....|-+|-++ .- +.+.+.+.++|+-.||..|.. +..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45678888753 11 224677888999999999975 267999965
No 142
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG3134 Predicted outer membrane lipoprotein [Function unknown]
Probab=73.56 E-value=1.6 Score=36.52 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=29.9
Q ss_pred hhhHHHHHHHhhhcccccccccccc--cccccchhhHHHHHHHh
Q 024603 54 LGGAIVGTIFGAMKGQTTETGFLHG--AGIGAVAGAITALQLLE 95 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g~~~~~g~~~g--a~~Ga~~gav~s~e~~~ 95 (265)
++|+.+||++|.+.|.--+-|==+= +.-||++|.-+..++=+
T Consensus 71 iaGt~iGAv~GGl~G~Q~GgG~Gk~~aTvAGAv~GGyaGN~Vq~ 114 (179)
T COG3134 71 IAGSVLGAVAGGVIGHQFGGGRGKDVATVAGALGGGYAGNQVQG 114 (179)
T ss_pred chhhhhHHHhhhhccccccCCCcchhhhhhhhhcccccchhhhh
Confidence 5899999999999998644442222 34488888888777555
No 144
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.14 E-value=1.9 Score=38.03 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=35.4
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
-..|.+|..-.-.+.. +-.|+-.+|..|+...+.+...||-|.
T Consensus 181 lk~Cn~Ch~LvIqg~r---Cg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIR---CGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhheeec---cCcccchhhhHHHHHHhcccCcCCchh
Confidence 3689999888766433 346889999999999999999999994
No 145
>PRK11677 hypothetical protein; Provisional
Probab=71.91 E-value=2.8 Score=34.43 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=19.1
Q ss_pred HHHhhhHHHHHHHhhhcccccccc
Q 024603 51 IFALGGAIVGTIFGAMKGQTTETG 74 (265)
Q Consensus 51 ~~~~~g~~~ga~~g~~~g~~~~~g 74 (265)
+.+++|-++|+|+|+++++.+..+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 567889999999999888865544
No 146
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=71.40 E-value=2.4 Score=26.77 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=16.8
Q ss_pred cccccccccccCCCe-------eeecCCCCcccc
Q 024603 211 IGCSICLEKFEEGDS-------ARKLPSCGHCFH 237 (265)
Q Consensus 211 ~~C~ICle~~~~~~~-------~r~LP~CgH~FH 237 (265)
.+||-|...|..++. ..+.|+|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 357777777665432 345667777774
No 147
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.67 E-value=2.9 Score=40.14 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=44.2
Q ss_pred CCCHHHHhcCCcccccchhhhh--cccCcccccccccccCC--CeeeecCCCCcccchhhHHHhhcCCCCcccc
Q 024603 185 GLSEDMIQKLPECALHSEELIQ--LDNEIGCSICLEKFEEG--DSARKLPSCGHCFHSECVDKWLTRNGSCPVC 254 (265)
Q Consensus 185 gls~~~i~~lp~~~~~~~~~~~--~~~~~~C~ICle~~~~~--~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvC 254 (265)
+++-+..+++......+....+ ...-..|+.|.-.++-. -.-.+.. |+|.||+.|...|...+..|.-|
T Consensus 279 ~~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 279 NLSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3666666666654443332211 13457899998776533 2334455 99999999999998877777544
No 148
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=70.48 E-value=3.9 Score=32.58 Aligned_cols=28 Identities=36% Similarity=0.713 Sum_probs=19.9
Q ss_pred ecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 228 KLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 228 ~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.+|+|+| ..+.+.+...|+.||+++.-+
T Consensus 71 ~CP~C~K------~TKmLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 71 ECPNCGK------QTKMLGRVDACMHCKEPLTLD 98 (114)
T ss_pred ECCCCCC------hHhhhchhhccCcCCCcCccC
Confidence 3557777 345566777899999998643
No 149
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=70.14 E-value=2.5 Score=33.84 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=7.8
Q ss_pred hhHHHHHHHhhhcc
Q 024603 55 GGAIVGTIFGAMKG 68 (265)
Q Consensus 55 ~g~~~ga~~g~~~g 68 (265)
.|+++|+|+||.++
T Consensus 9 ~G~liGgiiGa~aa 22 (115)
T COG4980 9 FGILIGGIIGAAAA 22 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666555444
No 150
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=69.95 E-value=4 Score=37.18 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccccccccc-cc-c-------cchhhHHHHHHHhhhccCcc
Q 024603 39 AMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGA-GI-G-------AVAGAITALQLLESAADGES 102 (265)
Q Consensus 39 ~~~~~~~~~~~~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga-~~-G-------a~~gav~s~e~~~~~~~~~~ 102 (265)
..++++.+++-+.+ |..+||++|++.|+.-+.|..++. .. + +..-|++++-.-.++++|+.
T Consensus 3 ~~gki~g~~~G~~~---~g~~Ga~~G~~~Gh~~d~~~~~~~~~~~~~~~~~q~~ff~a~~aLl~~vAkADG~V 72 (267)
T PRK09430 3 YWGKILGFAFGFLF---GGFFGALLGLLIGHMFDKARSRKGGGWFANQRERQALFFNTTFAVMGHLAKAKGRV 72 (267)
T ss_pred hHHHHHHHHHHHHH---hhHHHHHHHHHHHhHHhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44566666666655 458999999999998777655431 11 1 11124555554455577764
No 151
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=68.47 E-value=0.85 Score=33.32 Aligned_cols=40 Identities=23% Similarity=0.537 Sum_probs=21.9
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
..||.|.+++... =+|..|..|-.. +.....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHH
Confidence 5789998876542 267777777654 345667999988764
No 152
>COG4803 Predicted membrane protein [Function unknown]
Probab=67.24 E-value=6.6 Score=32.98 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=19.7
Q ss_pred HHhhhHHHHHHHhhhccccccccccc
Q 024603 52 FALGGAIVGTIFGAMKGQTTETGFLH 77 (265)
Q Consensus 52 ~~~~g~~~ga~~g~~~g~~~~~g~~~ 77 (265)
--+.|..+||.+||+.|--++-|.=+
T Consensus 78 ~Pl~G~avGAa~GAl~g~l~DvGIdD 103 (170)
T COG4803 78 NPLLGMAVGAASGALSGSLTDVGIDD 103 (170)
T ss_pred hHHHHHHHHHhhhhhccceeecCcCH
Confidence 34678888888888888878777544
No 153
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=67.02 E-value=3.2 Score=37.91 Aligned_cols=48 Identities=29% Similarity=0.688 Sum_probs=34.0
Q ss_pred cccccccccccCCCeeee---cCCCCcccchhhHHHhhc---------CCCCcccccccc
Q 024603 211 IGCSICLEKFEEGDSARK---LPSCGHCFHSECVDKWLT---------RNGSCPVCRECV 258 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~---LP~CgH~FH~~CI~~WL~---------~~~sCPvCR~~v 258 (265)
.+|.+|.+++.+.+..+. -|.|+-.+|..|+..-+. ....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 589999999954443322 236889999999988432 234599999744
No 154
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.63 E-value=3.1 Score=40.59 Aligned_cols=37 Identities=30% Similarity=0.785 Sum_probs=29.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR 247 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~ 247 (265)
....+|-||.+.+.. ....+ .|+|.||..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~-~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGL-GCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhc-CCCcHHHHHHHHHHhhh
Confidence 456799999999877 34445 49999999999998863
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=65.64 E-value=4.5 Score=27.35 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=28.0
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 246 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~ 246 (265)
..|.+|-..|.....-.....||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 578999888877555555668999999999876654
No 156
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=64.68 E-value=2.5 Score=28.75 Aligned_cols=39 Identities=33% Similarity=0.740 Sum_probs=21.7
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhc--CCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--RNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~--~~~sCPvCR~~v~ 259 (265)
...||.|-+++.. ..+ +.| |.++-.. ..-.||+|...+.
T Consensus 2 ~f~CP~C~~~~~~-~~L-----~~H-----~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSE-SSL-----VEH-----CEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCH-HHH-----HHH-----HHhHCcCCCCCccCCCchhhhh
Confidence 4689999885444 222 333 2222222 2346999987544
No 157
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=64.64 E-value=1.2 Score=36.85 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=25.2
Q ss_pred HHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHH
Q 024603 51 IFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 51 ~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e 92 (265)
+-+++|+.+|.|.|.-+|--+++ .--+.+|||||+|+.-.
T Consensus 62 vG~igG~~lGG~~g~~iGgG~G~--~~At~~GAvAGgvaG~~ 101 (154)
T COG3133 62 IGAIGGAVLGGFLGNTIGGGTGR--SLATAAGAVAGGVAGQG 101 (154)
T ss_pred ceeeccccccceeeccccCCcch--HHHHHHhHhhhhhhhhh
Confidence 34556666666666655554433 33466799999887654
No 158
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=64.63 E-value=4.4 Score=38.04 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=32.6
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
..+..|-.|.++....... +.+.|.|.||.+|-.---+.=..||-|.
T Consensus 328 ~~~~~Cf~C~~~~~~~~~y-~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 328 NGSRFCFACQGELLSSGRY-RCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCCcceeeeccccCCCCcE-EchhccceeeccchHHHHhhhhcCCCcC
Confidence 3456699997776664444 4567999999999543333335699996
No 159
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=64.50 E-value=6.7 Score=23.68 Aligned_cols=38 Identities=24% Similarity=0.581 Sum_probs=24.0
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.|..|-+.+.+.+..... =+..||.+| ..|..|+.++.
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 377888877775333222 356777776 46788877653
No 160
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.89 E-value=1.4 Score=39.51 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=28.2
Q ss_pred HHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHH
Q 024603 52 FALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLL 94 (265)
Q Consensus 52 ~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~ 94 (265)
|-.+|+++|++.+...|+ .|..+|-.+|++.|+.++.-++
T Consensus 164 fvaaga~tgsvF~~~~gL---~g~aa~vilG~~lG~tv~~~l~ 203 (270)
T KOG4608|consen 164 FVAAGAVTGSVFRINVGL---RGLAAGVILGALLGTTVGGLLM 203 (270)
T ss_pred hhccccceeeeEEeehhh---HHHhhcceeehhhcchHHHHHH
Confidence 446789999988888884 4666666667777766665543
No 161
>PRK05978 hypothetical protein; Provisional
Probab=61.26 E-value=5.7 Score=33.22 Aligned_cols=29 Identities=28% Similarity=0.682 Sum_probs=22.3
Q ss_pred cCCC--CcccchhhHHHhhcCCCCccccccccccCC
Q 024603 229 LPSC--GHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 229 LP~C--gH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
+|.| ||.|+ .+++-+.+||.|-.++...+
T Consensus 36 CP~CG~G~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 36 CPACGEGKLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred CCCCCCCcccc-----cccccCCCccccCCccccCC
Confidence 4455 47786 78899999999999887553
No 162
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=4.4 Score=37.62 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=40.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.+...|-||...+..+.... .|.|.|+..|-..|......||.||....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCcC
Confidence 45678999988888766552 59999999999999999999999997653
No 163
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=59.19 E-value=10 Score=29.71 Aligned_cols=48 Identities=29% Similarity=0.515 Sum_probs=28.8
Q ss_pred cCcccccccccccCCCee----eecCCC---CcccchhhHHHhhcC---------CCCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSA----RKLPSC---GHCFHSECVDKWLTR---------NGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~----r~LP~C---gH~FH~~CI~~WL~~---------~~sCPvCR~ 256 (265)
....|-.|.+.-.+.... ...+.| .=.||..|+..++.. +-.||.||.
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 345677776643322211 012456 668999999877642 235999985
No 164
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=58.95 E-value=3 Score=30.26 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=4.4
Q ss_pred ccccccchhhH
Q 024603 78 GAGIGAVAGAI 88 (265)
Q Consensus 78 ga~~Ga~~gav 88 (265)
|+++||++|-+
T Consensus 8 Ga~~Ga~~glL 18 (74)
T PF12732_consen 8 GAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 165
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=58.83 E-value=6.9 Score=24.61 Aligned_cols=27 Identities=37% Similarity=0.819 Sum_probs=15.7
Q ss_pred cccccccccccCCCe-------eeecCCCCcccc
Q 024603 211 IGCSICLEKFEEGDS-------ARKLPSCGHCFH 237 (265)
Q Consensus 211 ~~C~ICle~~~~~~~-------~r~LP~CgH~FH 237 (265)
.+|+=|...|..++. ..+.|+|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 357777766654432 234556777764
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.25 E-value=11 Score=39.15 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=33.4
Q ss_pred ccCcccccccccccC---------CCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEE---------GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~---------~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..+..|+-|...|.. ....-.+|.|.|.-|..=| .++..||+|...+..
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EI----s~y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEI----SKYNCCPLCHSMESF 1186 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccc----cccccCccccChhhc
Confidence 346778888777643 1234567889998887654 346789999876643
No 167
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=57.16 E-value=3.6 Score=41.55 Aligned_cols=44 Identities=27% Similarity=0.821 Sum_probs=28.1
Q ss_pred cCccccccccc-----ccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 209 NEIGCSICLEK-----FEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~-----~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
....|.+|..+ |+ .+.++....|+++||..|... ....||.|-+
T Consensus 510 ~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 34567777221 11 234455557999999999755 4455999954
No 168
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=56.13 E-value=14 Score=25.81 Aligned_cols=45 Identities=27% Similarity=0.696 Sum_probs=32.8
Q ss_pred cccccccccccCCC-eeeecCCCCc--ccchhhHHHhhcCCCCcccccccccc
Q 024603 211 IGCSICLEKFEEGD-SARKLPSCGH--CFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 211 ~~C~ICle~~~~~~-~~r~LP~CgH--~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..|-.|-.++.... ..+ .|.+ .||.+|.+.-| +..||.|-..+..
T Consensus 6 pnCE~C~~dLp~~s~~A~---ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAY---ICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcce---EEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 45777877777654 233 2654 89999999976 7889999877654
No 169
>PRK11280 hypothetical protein; Provisional
Probab=55.89 E-value=5.3 Score=34.12 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=25.5
Q ss_pred HHHHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHH
Q 024603 49 TCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLL 94 (265)
Q Consensus 49 ~~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~ 94 (265)
|.+-|++|+++|..+|. |-....+-+-||+.|+++|.-+.-.+=
T Consensus 68 tv~Gav~Gg~~G~~iGg--G~Gr~~at~~Ga~~G~~~G~~i~~~~~ 111 (170)
T PRK11280 68 SVLGAVAGGVLGHQFGG--GRGKDVATVAGALGGGYAGNQIQGGMQ 111 (170)
T ss_pred HHHHHHHHHHhhhhccC--CCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455555555553 223444566688888888888775433
No 170
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=55.50 E-value=4.6 Score=35.79 Aligned_cols=37 Identities=41% Similarity=0.568 Sum_probs=21.1
Q ss_pred HhhhHHHHHHHhhhccccccc--c-cccccccccchhhHH
Q 024603 53 ALGGAIVGTIFGAMKGQTTET--G-FLHGAGIGAVAGAIT 89 (265)
Q Consensus 53 ~~~g~~~ga~~g~~~g~~~~~--g-~~~ga~~Ga~~gav~ 89 (265)
|++|+.+|+.+|+.-+-.++. | =+-|+++|.++|+.+
T Consensus 90 a~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~v 129 (215)
T PF05818_consen 90 ALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAMV 129 (215)
T ss_pred HHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhhc
Confidence 556677777777655433332 2 244566677777654
No 171
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=55.16 E-value=4.9 Score=27.53 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=16.9
Q ss_pred CeeeecCCCCcccchhhHHHh
Q 024603 224 DSARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 224 ~~~r~LP~CgH~FH~~CI~~W 244 (265)
......|.|+|.||..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 344566679999999999888
No 172
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=55.03 E-value=9.3 Score=26.00 Aligned_cols=26 Identities=38% Similarity=0.934 Sum_probs=15.3
Q ss_pred ecCCCCcccchhhHHHhhcCCCCcccc
Q 024603 228 KLPSCGHCFHSECVDKWLTRNGSCPVC 254 (265)
Q Consensus 228 ~LP~CgH~FH~~CI~~WL~~~~sCPvC 254 (265)
+.|.|||.|-.. +..-......||.|
T Consensus 30 ~C~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 30 KCPKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred ECCCCCCeeEcc-HhhhccCCCCCCCC
Confidence 345677766544 22222466779988
No 173
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.73 E-value=3.6 Score=28.00 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=5.5
Q ss_pred Ccccccccccc
Q 024603 250 SCPVCRECVCK 260 (265)
Q Consensus 250 sCPvCR~~v~~ 260 (265)
.||+|.+++.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999888754
No 174
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.26 E-value=7.9 Score=31.32 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=16.0
Q ss_pred HhhhHHHHHHHhhhcccccccc
Q 024603 53 ALGGAIVGTIFGAMKGQTTETG 74 (265)
Q Consensus 53 ~~~g~~~ga~~g~~~g~~~~~g 74 (265)
|++|.++|.|+|+++++.+..+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5677888888888777765544
No 175
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.56 E-value=7.9 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=28.5
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 246 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~ 246 (265)
+-..|+.||+.+.+|... +=||+|+.+||.+.+.
T Consensus 42 ~FdcCsLtLqPc~dPvit----~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVIT----PDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccC----CCCeeeeHHHHHHHHH
Confidence 346899999999997666 5899999999988764
No 176
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=51.33 E-value=13 Score=28.40 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=30.6
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
....|+-|...+.--+.+ | +-.|+..+.+|..|++++..
T Consensus 32 ~rS~C~~C~~~L~~~~lI---P----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 32 PRSHCPHCGHPLSWWDLI---P----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCCcCcCCCCcCcccccc---h----------HHHHHHhCCCCcccCCCCCh
Confidence 346788888877764443 6 88999999999999998853
No 177
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=51.03 E-value=5.4 Score=25.84 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=17.3
Q ss_pred cCCCCcccchhhHHHhhcCCCCcccccc-cc
Q 024603 229 LPSCGHCFHSECVDKWLTRNGSCPVCRE-CV 258 (265)
Q Consensus 229 LP~CgH~FH~~CI~~WL~~~~sCPvCR~-~v 258 (265)
.+.|||.|-..--..= .....||.|.. .+
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~ 37 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE-DDPVPCPECGSTEV 37 (42)
T ss_pred eCCCCCEEEEEEEcCC-CCCCcCCCCCCCce
Confidence 3468888775432111 23456999988 44
No 178
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.25 E-value=11 Score=23.02 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=13.0
Q ss_pred CCCcccchhhHHHhhcCCCCccccccc
Q 024603 231 SCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 231 ~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
.|||++-..- ....||+|..+
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCCc
Confidence 5777655432 34579999763
No 179
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=50.15 E-value=17 Score=24.31 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=18.2
Q ss_pred cccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 213 CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 213 C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
|.-|-+.+...+..... -+..||..| .+|-.|++++.+
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCC
Confidence 44555555544433211 345566555 345555555543
No 180
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.58 E-value=6.5 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=25.4
Q ss_pred hhHHHHHHHhhhccc---ccccccccccccccchhhH
Q 024603 55 GGAIVGTIFGAMKGQ---TTETGFLHGAGIGAVAGAI 88 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~---~~~~g~~~ga~~Ga~~gav 88 (265)
+|++||+.+|-+.-+ ++-=|++=+..+|..||-+
T Consensus 54 sGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 54 SGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 577777777777655 4556888888889888854
No 181
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=49.45 E-value=4.2 Score=37.31 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=21.6
Q ss_pred CcccccccccccCCCeeeecC-CCCcccchhhHHHhhcCCCCcccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP-~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
...||||=..-.-......-+ +=.|.+|.-|-.+|--....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 468999966543321111100 23577889999999888889999964
No 182
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=48.72 E-value=16 Score=31.74 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccccc
Q 024603 37 IRAMKRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGF 75 (265)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~g~~~ga~~g~~~g~~~~~g~ 75 (265)
...++.+++|++|.-|+++|+..|...|=.+|+.++.++
T Consensus 91 ~sav~~IlsGV~t~g~G~vGg~ag~~~g~gagh~~~g~~ 129 (195)
T PRK15361 91 ITAGGAMLSGVLTIGLGAVGGETGLIAGQAVGHTAGGVM 129 (195)
T ss_pred HHHHHHHHHhHHHhcccccchHHHHHhhhhhhhhhhccc
Confidence 344556666666666677777777777777777766433
No 183
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=48.53 E-value=17 Score=29.94 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.0
Q ss_pred CCCccccccccccCCC
Q 024603 248 NGSCPVCRECVCKDTD 263 (265)
Q Consensus 248 ~~sCPvCR~~v~~~~~ 263 (265)
+..||.|...+...++
T Consensus 123 ~f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 123 TFTCPRCGEELEEDDN 138 (147)
T ss_pred cEECCCCCCEEEEcCc
Confidence 3679999998865543
No 184
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.31 E-value=3.1 Score=37.93 Aligned_cols=49 Identities=31% Similarity=0.547 Sum_probs=36.2
Q ss_pred cCcccccccccccCC--Ce-eeecCC-------CCcccchhhHHHhhcCC-CCccccccc
Q 024603 209 NEIGCSICLEKFEEG--DS-ARKLPS-------CGHCFHSECVDKWLTRN-GSCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~--~~-~r~LP~-------CgH~FH~~CI~~WL~~~-~sCPvCR~~ 257 (265)
....|.||...+... .. .+.+.. |+|..|..|++.-+.+. ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999999842 22 233323 99999999999987655 589999974
No 185
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=48.29 E-value=14 Score=33.21 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHH---H--HHHHHHHhhhHHHHHHHhhhcccc
Q 024603 32 GTGVLIRAMKRVLY---A--ALTCIFALGGAIVGTIFGAMKGQT 70 (265)
Q Consensus 32 ~~~~~~~~~~~~~~---~--~~~~~~~~~g~~~ga~~g~~~g~~ 70 (265)
|-+.++|++-+..+ + +.|+.-++.|.++|+++|+..|..
T Consensus 84 GRDvlSRli~Gt~~t~G~allvt~~a~l~g~~lGi~AG~t~gl~ 127 (296)
T COG4171 84 GRDVLSRLISGTAPTVGGALLVTLAATICGGVLGIFAGATHGLR 127 (296)
T ss_pred hHHHHHHHHccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888876542 2 345666677888888888877754
No 186
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=47.66 E-value=15 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=11.5
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhH
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECV 241 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI 241 (265)
.|.+|.+.... ......+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57888777766 556666779999999985
No 187
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=46.81 E-value=6.2 Score=31.60 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=19.3
Q ss_pred ccccccccccccchhhHHHHHHHh
Q 024603 72 ETGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 72 ~~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
...||=|+++|+|.||++++-..-
T Consensus 4 ~~~~l~G~liGgiiGa~aaLL~AP 27 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAALLFAP 27 (115)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCC
Confidence 357889999999999999876443
No 188
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=46.33 E-value=12 Score=31.43 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=20.6
Q ss_pred hhHHH-HHHHhhhcccc-----cccccccccccccchhhHHHHH
Q 024603 55 GGAIV-GTIFGAMKGQT-----TETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 55 ~g~~~-ga~~g~~~g~~-----~~~g~~~ga~~Ga~~gav~s~e 92 (265)
.|+++ |+++-++.... .-.-+.+|+..|+++|++++--
T Consensus 41 lGsl~~~Pi~~~~~~~~~~~~~~~~~~~~~~~~G~l~G~~~gp~ 84 (155)
T PF08560_consen 41 LGSLIVGPIYRLLKQPRLNPKELTNRFVKGGRNGALAGAVLGPV 84 (155)
T ss_pred HHHHHhHHHHHHHhCccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35555 77766666553 2234556665555555554433
No 189
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.36 E-value=17 Score=34.19 Aligned_cols=54 Identities=24% Similarity=0.554 Sum_probs=33.9
Q ss_pred ccCcccccccccccC---------------CC-eeeecCCCCcccchhhHHHhhc---------CCCCccccccccccCC
Q 024603 208 DNEIGCSICLEKFEE---------------GD-SARKLPSCGHCFHSECVDKWLT---------RNGSCPVCRECVCKDT 262 (265)
Q Consensus 208 ~~~~~C~ICle~~~~---------------~~-~~r~LP~CgH~FH~~CI~~WL~---------~~~sCPvCR~~v~~~~ 262 (265)
..+.+||+|+..=.. +. .-..-| |||.--..-..-|-. -+..||.|-..+..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 346799999865321 11 112345 999877777777754 2345999988776544
No 190
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=44.69 E-value=9.3 Score=31.64 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.9
Q ss_pred HHHHHHHhhhccccccccccc
Q 024603 57 AIVGTIFGAMKGQTTETGFLH 77 (265)
Q Consensus 57 ~~~ga~~g~~~g~~~~~g~~~ 77 (265)
+++|||+|+++|+..|..+-|
T Consensus 88 t~~GAvAGgvaG~~ie~~~n~ 108 (154)
T COG3133 88 TAAGAVAGGVAGQGIEEAMNK 108 (154)
T ss_pred HHHhHhhhhhhhhhhHhhhcc
Confidence 578899999999988877654
No 191
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=44.29 E-value=24 Score=27.17 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=17.1
Q ss_pred hhHHHHHHHhhhccccccccc-ccccccccchh
Q 024603 55 GGAIVGTIFGAMKGQTTETGF-LHGAGIGAVAG 86 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~~~~~g~-~~ga~~Ga~~g 86 (265)
...++|++.|++....+.++- ...+-.|++||
T Consensus 39 Is~viGilLG~~~~~~~~~~~l~~~~~aG~laG 71 (93)
T PF06946_consen 39 ISVVIGILLGAAAYPLTGDGNLALMAWAGGLAG 71 (93)
T ss_pred HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhh
Confidence 345566666666665665552 22234455555
No 192
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=44.01 E-value=7.6 Score=35.99 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=10.0
Q ss_pred cccccccccchhhH
Q 024603 75 FLHGAGIGAVAGAI 88 (265)
Q Consensus 75 ~~~ga~~Ga~~gav 88 (265)
+==||++|++.|++
T Consensus 171 LG~gaaiGal~Gg~ 184 (292)
T PF11981_consen 171 LGAGAAIGALAGGA 184 (292)
T ss_pred hHHHHHHHHHHHHH
Confidence 44567778888877
No 193
>PLN02189 cellulose synthase
Probab=43.00 E-value=22 Score=38.37 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=37.1
Q ss_pred cCccccccccccc---CCCeeeecCCCCcccchhhHHHhh-cCCCCccccccccc
Q 024603 209 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~---~~~~~r~LP~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 259 (265)
....|.||-+++. +++.-.-+..|+--.|..|.+-=- +.++.||.|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4568999999975 445555566688889999984322 35578999998775
No 194
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=42.67 E-value=12 Score=27.01 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=8.7
Q ss_pred ccchhhHHHhhc
Q 024603 235 CFHSECVDKWLT 246 (265)
Q Consensus 235 ~FH~~CI~~WL~ 246 (265)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 195
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=42.55 E-value=10 Score=39.84 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=33.7
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC------CCCccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~------~~sCPvCR~~ 257 (265)
.....|..|...... ..-++|.|+|.+|.+|++.|.-+ -..|+.|+..
T Consensus 227 g~~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 227 GIREMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred Ccchhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 345678888766443 34557889999999999999521 1348877753
No 196
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=41.46 E-value=18 Score=33.14 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 024603 34 GVLIRAMKRV 43 (265)
Q Consensus 34 ~~~~~~~~~~ 43 (265)
|++..++..+
T Consensus 56 Gi~~kIf~wi 65 (306)
T PF04888_consen 56 GIFSKIFGWI 65 (306)
T ss_pred ChHHHHHHHH
Confidence 4444444433
No 197
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.30 E-value=9.1 Score=39.90 Aligned_cols=45 Identities=36% Similarity=0.622 Sum_probs=30.2
Q ss_pred cCcccccccccccCC----CeeeecCCCCcccchhhHHHhhcCCCCccccc
Q 024603 209 NEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 255 (265)
Q Consensus 209 ~~~~C~ICle~~~~~----~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR 255 (265)
.+..|+-|.+..... ..+..+ .|+|.||..|+..-..++. |-.|.
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChhh
Confidence 345799998877532 344455 5999999999876654444 55443
No 198
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.21 E-value=64 Score=27.47 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHHh
Q 024603 41 KRVLYAALTCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 41 ~~~~~~~~~~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
-+.+..++...||+.+-..|+..=++-| ..++|=+|==.+|.|.|+++...++.
T Consensus 15 ~n~v~~~~v~~lai~sl~~s~llI~lFg-~~~~~nf~~NllGVil~~~~~~~~l~ 68 (165)
T PF11286_consen 15 LNRVIVACVASLAILSLAFSQLLIALFG-GESGGNFHWNLLGVILGLLLTSALLR 68 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCceeeeHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777666666 44556677778899999999888777
No 199
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=39.75 E-value=1.1e+02 Score=24.00 Aligned_cols=7 Identities=71% Similarity=0.938 Sum_probs=2.6
Q ss_pred cccchhh
Q 024603 81 IGAVAGA 87 (265)
Q Consensus 81 ~Ga~~ga 87 (265)
-|+++|+
T Consensus 90 aG~~aGa 96 (128)
T PF02466_consen 90 AGAAAGA 96 (128)
T ss_pred HHHHHHH
Confidence 3333333
No 200
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=39.64 E-value=18 Score=29.68 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=18.3
Q ss_pred eeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 226 ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
..++++|||.|+- .+..||.|..+.
T Consensus 29 g~kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 29 GTKCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EEEcCCCCeEEcC--------CcccCCCCCCCC
Confidence 3456689999884 356799998763
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.31 E-value=14 Score=38.19 Aligned_cols=36 Identities=33% Similarity=0.626 Sum_probs=25.3
Q ss_pred eeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 226 ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
+..+|+|...||.+=.+--..++..||.||.+..+.
T Consensus 1044 it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~dd~ 1079 (1081)
T KOG1538|consen 1044 ITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKDDP 1079 (1081)
T ss_pred hhhCchHHhhhccchhhHHHHhcCCCCcccccccCC
Confidence 445667777777765555555888999999876543
No 202
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=39.17 E-value=10 Score=36.62 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=0.0
Q ss_pred cCcccccccccccC----------------CCeeeecCCCCcccchhhHHHhhc---------CCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEE----------------GDSARKLPSCGHCFHSECVDKWLT---------RNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~----------------~~~~r~LP~CgH~FH~~CI~~WL~---------~~~sCPvCR~~v~~ 260 (265)
.+-+||+|+..-.. +-.-..-| |||.-=.....-|-. -+..||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 36799999865321 01122455 999988888888854 12459999988864
No 203
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.66 E-value=17 Score=34.14 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=34.7
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC---CCCcccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR---NGSCPVCRE 256 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~---~~sCPvCR~ 256 (265)
..-..||+=-+.-.+......+. |||+.-.+-+++.-+. ...||.|-.
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34578998777777666666775 9999999988876432 235999943
No 204
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=38.40 E-value=20 Score=28.34 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=30.8
Q ss_pred cCcccccccccccCC-CeeeecCCCCcccchhhHHHhhcCCC--Cccccccc
Q 024603 209 NEIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRNG--SCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~-~~~r~LP~CgH~FH~~CI~~WL~~~~--sCPvCR~~ 257 (265)
.+..|.+|...|.-- ..-...+.|.|.+|..|-.. ..+.. .|.+|++.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHH
Confidence 467999999887432 23356668999999999655 21222 39998753
No 205
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.76 E-value=44 Score=24.96 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=21.1
Q ss_pred cCcccccccccccC---CCeeeecCCCCcccchhhHHHhh-cCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEE---GDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~---~~~~r~LP~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 259 (265)
....|-||=+++.. ++.......|+--.|..|..-=. ..++.||-|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 45689999988753 34333344577788999986433 36678999998764
No 206
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=35.54 E-value=27 Score=23.34 Aligned_cols=41 Identities=34% Similarity=0.334 Sum_probs=27.1
Q ss_pred HhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHHh
Q 024603 53 ALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 53 ~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
.++|+++|....-.-|. ..++.=+.-+.|+-||++-+-+.+
T Consensus 4 GiiGa~vGg~l~~~lg~--~~~~~~~~~i~aviGAiill~i~~ 44 (48)
T PF04226_consen 4 GIIGAFVGGWLFGLLGI--NGGGSWGSFIVAVIGAIILLFIYR 44 (48)
T ss_pred ehHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666666 344444555788888887666554
No 207
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=35.51 E-value=66 Score=29.65 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhhcccc
Q 024603 32 GTGVLIRAMKRVLYAALTCIF-ALGGAIVGTIFGAMKGQT 70 (265)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ga~~g~~~g~~ 70 (265)
|=+.++|++-+.-..+...+. ++...++|.+.|+++|+.
T Consensus 74 GRDi~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~ 113 (289)
T COG1173 74 GRDILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYF 113 (289)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566778877776555444443 334666677777777654
No 208
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.36 E-value=51 Score=23.52 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHHhhhcc
Q 024603 50 CIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLESAAD 99 (265)
Q Consensus 50 ~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~~~~~~ 99 (265)
++|..-|.+.++|-|.+ ..++.++|...+.-+.|.+.-+-.+|....
T Consensus 14 avFiaLagl~~~I~GlL---fD~~~~~~yg~~al~~Gv~~fV~~Lnp~~~ 60 (62)
T PF11177_consen 14 AVFIALAGLAAVIHGLL---FDEERVFRYGVIALVVGVAGFVVMLNPAPT 60 (62)
T ss_pred HHHHHHHHHHHHhhhhh---ccccchhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 45556666788888875 455778888877777777666666665433
No 209
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.58 E-value=79 Score=29.44 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhhhcccc
Q 024603 32 GTGVLIRAMKRV-LYAALTCIFALGGAIVGTIFGAMKGQT 70 (265)
Q Consensus 32 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ga~~g~~~g~~ 70 (265)
|-+.+.|++-+. +|-.+....++.++++|..+||+.|+-
T Consensus 129 gRDV~ARliygfRiSvLfgL~lT~~SaliGv~~GA~qGyf 168 (341)
T COG4239 129 GRDVLARLIYGFRISVLFGLSLTLISALIGVLAGALQGYF 168 (341)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566654433 344556667777888888888877664
No 210
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.33 E-value=20 Score=25.23 Aligned_cols=16 Identities=31% Similarity=0.710 Sum_probs=11.5
Q ss_pred CCCCccccccccccCC
Q 024603 247 RNGSCPVCRECVCKDT 262 (265)
Q Consensus 247 ~~~sCPvCR~~v~~~~ 262 (265)
.|+.||+|-.+++.+.
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 4677888888776553
No 211
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=34.29 E-value=19 Score=22.72 Aligned_cols=32 Identities=28% Similarity=0.589 Sum_probs=20.1
Q ss_pred eecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 227 RKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 227 r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
+..|+||++||..=-- -+....|..|..++..
T Consensus 2 r~C~~Cg~~Yh~~~~p--P~~~~~Cd~cg~~L~q 33 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP--PKVEGVCDNCGGELVQ 33 (36)
T ss_dssp EEETTTTEEEETTTB----SSTTBCTTTTEBEBE
T ss_pred cCcCCCCCccccccCC--CCCCCccCCCCCeeEe
Confidence 3457899999954211 1244679999876643
No 212
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=34.22 E-value=21 Score=32.16 Aligned_cols=10 Identities=60% Similarity=0.966 Sum_probs=5.1
Q ss_pred hHHHHHHHhh
Q 024603 56 GAIVGTIFGA 65 (265)
Q Consensus 56 g~~~ga~~g~ 65 (265)
|++.||.+|+
T Consensus 119 ga~~Gaa~G~ 128 (243)
T PRK13731 119 GAAVGAALGA 128 (243)
T ss_pred hHHHHHHhhh
Confidence 4555555554
No 213
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=33.83 E-value=19 Score=35.51 Aligned_cols=50 Identities=20% Similarity=0.501 Sum_probs=33.3
Q ss_pred cCccccccccccc-CCCeeeecCCCCcccchhhHHHhhc----CC----CCcccccccc
Q 024603 209 NEIGCSICLEKFE-EGDSARKLPSCGHCFHSECVDKWLT----RN----GSCPVCRECV 258 (265)
Q Consensus 209 ~~~~C~ICle~~~-~~~~~r~LP~CgH~FH~~CI~~WL~----~~----~sCPvCR~~v 258 (265)
.+..|++|+..-. ....+..+.+|+-.||..|.....+ .. -.|-+|+...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4567999985543 3345556668999999999765433 11 2388888644
No 214
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=33.60 E-value=24 Score=32.10 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=32.2
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPV 253 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPv 253 (265)
+..|||=..++..|..-+ +|||+|-.+=|...+... ..||+
T Consensus 176 s~rdPis~~~I~nPviSk---kC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISK---KCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhchhhhc---CcCcchhhhhHHHHhccCceeeccc
Confidence 478999888888765543 799999999999988764 34876
No 215
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=33.44 E-value=1.6e+02 Score=21.71 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=24.1
Q ss_pred hhhcchhHHHHHHHhhh-ccchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 024603 12 MSLTCKETVSLWLFATM-CAFGTGVLIRAMKRVLYAALTCIFALGGA 57 (265)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 57 (265)
++++|+ |.+-+.+.. ++...|-+..--..+....+|..|.+..+
T Consensus 24 A~lTCP--CHLpil~~vLaGTaaGafl~e~w~iaal~l~~LF~lsl~ 68 (75)
T PF05052_consen 24 ALLTCP--CHLPILAPVLAGTAAGAFLGEHWVIAALTLTGLFVLSLT 68 (75)
T ss_pred HHhhCc--chHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467787 554333222 44455555444555666666666666554
No 216
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=33.17 E-value=33 Score=27.02 Aligned_cols=30 Identities=33% Similarity=0.355 Sum_probs=15.5
Q ss_pred HHHHHhhhcccccccccccccccccchhhHHHH
Q 024603 59 VGTIFGAMKGQTTETGFLHGAGIGAVAGAITAL 91 (265)
Q Consensus 59 ~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~ 91 (265)
-|+++|++-|... =+++++.|++.|++++.
T Consensus 90 aG~~aGa~~~~~~---g~~~~~~~~~~~a~~~~ 119 (128)
T PF02466_consen 90 AGAAAGAVLGLRS---GPRGMASGAALGAAFAA 119 (128)
T ss_pred HHHHHHHHHHhcc---ChHHHHHHHHHHHHHHH
Confidence 3444444444433 35566666666655554
No 217
>PRK04023 DNA polymerase II large subunit; Validated
Probab=32.89 E-value=26 Score=37.79 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=31.7
Q ss_pred CcccccccccccCCCeeeecCCCC-----cccchhhHHHhhcCCCCccccccccccC
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~Cg-----H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...|+-|=... ....+|+|| +.||..|- +......||-|.......
T Consensus 626 ~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 626 RRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPY 676 (1121)
T ss_pred CccCCCCCCcC----CcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCcc
Confidence 45788887663 335678898 46999993 333446799998877543
No 218
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=32.87 E-value=42 Score=23.27 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=4.6
Q ss_pred ccchhhHHHH
Q 024603 82 GAVAGAITAL 91 (265)
Q Consensus 82 Ga~~gav~s~ 91 (265)
||++||++++
T Consensus 17 aa~a~av~~~ 26 (54)
T PF11240_consen 17 AAIAGAVFTF 26 (54)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 219
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.70 E-value=36 Score=23.85 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=24.8
Q ss_pred cCcccccccccccC--CCeeeecCCCCcccchhhHH
Q 024603 209 NEIGCSICLEKFEE--GDSARKLPSCGHCFHSECVD 242 (265)
Q Consensus 209 ~~~~C~ICle~~~~--~~~~r~LP~CgH~FH~~CI~ 242 (265)
....|+.|-..... .......|.||+.+|.+-..
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~na 62 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNA 62 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHH
Confidence 45689999877776 45566677888888877543
No 220
>PRK02935 hypothetical protein; Provisional
Probab=32.61 E-value=40 Score=26.63 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=13.9
Q ss_pred HHhhcCCCCccccccccccC
Q 024603 242 DKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 242 ~~WL~~~~sCPvCR~~v~~~ 261 (265)
.+.+.+...|+.|++++.-+
T Consensus 80 TKmLGrvD~CM~C~~PLTLd 99 (110)
T PRK02935 80 TKMLGRVDACMHCNQPLTLD 99 (110)
T ss_pred hhhccceeecCcCCCcCCcC
Confidence 34555667799999888643
No 221
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.38 E-value=41 Score=36.55 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=35.6
Q ss_pred cCccccccccccc---CCCeeeecCCCCcccchhhHHH-hhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDK-WLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~---~~~~~r~LP~CgH~FH~~CI~~-WL~~~~sCPvCR~~v~ 259 (265)
....|-||=+++. +++.-.-+..|+-=.|..|.+- .-+.++.||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4568999999875 3444444445777799999842 2335678999998765
No 222
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.00 E-value=19 Score=22.45 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=15.6
Q ss_pred cCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 229 LPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 229 LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.+.|||.|-..--..= .....||.|...+.
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~ 37 (41)
T smart00834 8 CEDCGHTFEVLQKISD-DPLATCPECGGDVR 37 (41)
T ss_pred cCCCCCEEEEEEecCC-CCCCCCCCCCCcce
Confidence 3467776643211000 23456999987553
No 223
>PLN02436 cellulose synthase A
Probab=31.96 E-value=42 Score=36.47 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=36.8
Q ss_pred cCccccccccccc---CCCeeeecCCCCcccchhhHHHhh-cCCCCccccccccc
Q 024603 209 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~---~~~~~r~LP~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 259 (265)
....|-||-+++. +++.-.-+..|+--.|..|.+-=- +.++.||.|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4468999999974 455555555677789999985322 24567999998775
No 224
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.91 E-value=15 Score=34.24 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=27.8
Q ss_pred CcccccccccccCCCeeeec---CCCCcccchhhHHHhhcCCCCcccccc
Q 024603 210 EIGCSICLEKFEEGDSARKL---PSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~L---P~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
...||||=..-.... ++.- ..=.|.+|.-|-.+|--....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 458999966532211 1110 112356677788888777788999865
No 225
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.41 E-value=43 Score=27.43 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=17.8
Q ss_pred HHHHHhhhHHHHHHHhhhccccc
Q 024603 49 TCIFALGGAIVGTIFGAMKGQTT 71 (265)
Q Consensus 49 ~~~~~~~g~~~ga~~g~~~g~~~ 71 (265)
+-+.|+.|-+||.++|+++-+-+
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45678889999999999876644
No 226
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=31.16 E-value=44 Score=24.52 Aligned_cols=35 Identities=31% Similarity=0.634 Sum_probs=23.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHH
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK 243 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~ 243 (265)
.....|.+|....-. ...-..++|...||..|..+
T Consensus 34 ~~~~~C~~C~~~~Ga-~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 34 RRKLKCSICKKKGGA-CIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HhCCCCcCCCCCCCe-EEEEeCCCCCcEEChHHHcc
Confidence 446799999866222 11223457999999999865
No 227
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.08 E-value=14 Score=31.10 Aligned_cols=44 Identities=36% Similarity=0.539 Sum_probs=30.2
Q ss_pred cccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 215 ICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 215 ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
||+..-...+....-|.=.+-||..|-.+-+ ..||.|..++...
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 6766666555555555566789999976643 4699998888643
No 228
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=30.71 E-value=75 Score=20.55 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=12.9
Q ss_pred HHHHHHHhhhccccccc
Q 024603 57 AIVGTIFGAMKGQTTET 73 (265)
Q Consensus 57 ~~~ga~~g~~~g~~~~~ 73 (265)
.+++++++|+.+.+..+
T Consensus 18 iVv~~i~~ali~VSq~D 34 (39)
T PF06596_consen 18 IVVIPIAGALIFVSQFD 34 (39)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred hhhhhhhhheEEEeccC
Confidence 68888888888776544
No 229
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.70 E-value=25 Score=38.82 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=21.5
Q ss_pred cccccccccccCCCeeeecCCCCcc-----cchhhHHHhhcC---CCCccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHC-----FHSECVDKWLTR---NGSCPVCRECVC 259 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~-----FH~~CI~~WL~~---~~sCPvCR~~v~ 259 (265)
..|+=|-..... ..+|.||+. .|..|-.+--.. ...||.|-.++.
T Consensus 668 rkCPkCG~~t~~----~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 668 RRCPSCGTETYE----NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EECCCCCCcccc----ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 456666554322 155666643 355554331111 124777765554
No 230
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=30.01 E-value=12 Score=25.49 Aligned_cols=33 Identities=33% Similarity=0.697 Sum_probs=18.2
Q ss_pred cccc--ccccccCCCe----eeecCCCCcccchhhHHHh
Q 024603 212 GCSI--CLEKFEEGDS----ARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 212 ~C~I--Cle~~~~~~~----~r~LP~CgH~FH~~CI~~W 244 (265)
.||- |-..+..... ....|.|++.||..|-..|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 5554 5554443221 1456679999999998888
No 231
>PLN02400 cellulose synthase
Probab=29.96 E-value=41 Score=36.63 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=35.3
Q ss_pred cCccccccccccc---CCCeeeecCCCCcccchhhHHH-hhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFE---EGDSARKLPSCGHCFHSECVDK-WLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~---~~~~~r~LP~CgH~FH~~CI~~-WL~~~~sCPvCR~~v~ 259 (265)
....|-||=+++. +++.-.-+..|+-=.|..|.+- .-+.++.||.|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 4568999999975 3444444445777799999842 2235567999998775
No 232
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=29.95 E-value=35 Score=32.07 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=33.7
Q ss_pred ccCcccccccccccCCC----------eeeecCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 208 DNEIGCSICLEKFEEGD----------SARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~----------~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
.....|-.|...|..+. .-...+.|...||.+|-.---+.-..||-|..
T Consensus 360 ~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~ 418 (421)
T COG5151 360 PKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCEL 418 (421)
T ss_pred CCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcC
Confidence 34567999999886542 23456679999999995443334456999864
No 233
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=29.61 E-value=42 Score=27.53 Aligned_cols=32 Identities=31% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHhhhcccccccccccccccccchhhHHH
Q 024603 49 TCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITA 90 (265)
Q Consensus 49 ~~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s 90 (265)
+..-+.+|+++|.+.+... |..+|++.||.+.
T Consensus 64 ~~~ga~iG~IvG~f~~~p~----------G~iiG~~~Ga~l~ 95 (140)
T PF04306_consen 64 GIWGAIIGGIVGFFVLPPL----------GLIIGPFLGAFLG 95 (140)
T ss_pred HHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHHH
No 234
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=29.25 E-value=1.4e+02 Score=19.96 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 024603 39 AMKRVLYAALTCIFALGGAIVGTIFGA 65 (265)
Q Consensus 39 ~~~~~~~~~~~~~~~~~g~~~ga~~g~ 65 (265)
-+-..++++-|=+-.++|+++|.++|.
T Consensus 10 ~Vttai~~a~t~i~~ig~avL~v~V~i 36 (46)
T PF10389_consen 10 EVTTAISAAKTDIATIGGAVLGVIVGI 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 344455666666666677777666654
No 235
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=29.21 E-value=36 Score=20.26 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=19.7
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhH
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECV 241 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI 241 (265)
.|.+|.+...... ......|....|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5888877766654 5444567778887773
No 236
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=23 Score=34.50 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=28.4
Q ss_pred cCcccccccccccCCCee----eecCCCCcccchhhHHHhhcCC
Q 024603 209 NEIGCSICLEKFEEGDSA----RKLPSCGHCFHSECVDKWLTRN 248 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~----r~LP~CgH~FH~~CI~~WL~~~ 248 (265)
+...||.|....+..... ..-+.|.|.||..|+..|-.+.
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 344599999988775521 1122499999999998887653
No 237
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=28.81 E-value=28 Score=24.65 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=13.7
Q ss_pred CCCCccccccccccCCC
Q 024603 247 RNGSCPVCRECVCKDTD 263 (265)
Q Consensus 247 ~~~sCPvCR~~v~~~~~ 263 (265)
.|+.||+|-+.++.++.
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
Confidence 56789999999987764
No 238
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=28.65 E-value=33 Score=29.45 Aligned_cols=20 Identities=45% Similarity=0.461 Sum_probs=10.8
Q ss_pred ccccccccccccchhhHHHH
Q 024603 72 ETGFLHGAGIGAVAGAITAL 91 (265)
Q Consensus 72 ~~g~~~ga~~Ga~~gav~s~ 91 (265)
...++-+.++|+++++++..
T Consensus 30 ~~~~~l~~l~~~~~~~~~~~ 49 (199)
T PF10112_consen 30 DHSFLLSLLIGAVAFAVVYL 49 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33344456666666666543
No 239
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=28.38 E-value=39 Score=30.39 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=17.8
Q ss_pred cchhhHHHhhcCCCCcccccccccc
Q 024603 236 FHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 236 FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
-|..|-.+--+.-+.||+|+..-.+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcccc
Confidence 4566666665677899999976543
No 240
>PF07863 CtnDOT_TraJ: Homologues of TraJ from Bacteroides conjugative transposon; InterPro: IPR012424 Proteins in this entry are designated TraJ and are found in a proposed transfer region of a class of conjugative transposon found primarily in the Bacteroides lineage. They are related to conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6. This entry represents the C-terminal domain of these proteins.
Probab=28.17 E-value=72 Score=23.18 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=19.7
Q ss_pred hcchhHHHHHHHhhhccchhhHHHHHHHHHHH
Q 024603 14 LTCKETVSLWLFATMCAFGTGVLIRAMKRVLY 45 (265)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (265)
+-|-++|+-|.. .+.|-|-+.|-+....+
T Consensus 9 YFtVPtVA~wII---~AGG~g~~~~~vn~~a~ 37 (68)
T PF07863_consen 9 YFTVPTVANWII---QAGGGGAYGRNVNQTAS 37 (68)
T ss_pred EEEccchhheee---ecCchhHHHHHHHHHHH
Confidence 457788999998 67766766665544443
No 241
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.06 E-value=53 Score=35.64 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=35.7
Q ss_pred cCcccccccccccC---CCeeeecCCCCcccchhhHHHhh-cCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEE---GDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~---~~~~r~LP~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 259 (265)
....|-||=++... ++.-.-+..|+--.|..|.+-=. +.++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45789999998753 44444444577779999984322 35567999998775
No 242
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=27.94 E-value=29 Score=24.49 Aligned_cols=15 Identities=20% Similarity=0.727 Sum_probs=10.1
Q ss_pred CCCCccccccccccC
Q 024603 247 RNGSCPVCRECVCKD 261 (265)
Q Consensus 247 ~~~sCPvCR~~v~~~ 261 (265)
..+.||+|..+....
T Consensus 38 ~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSG 52 (59)
T ss_pred CCccCCCcCCccccc
Confidence 345688888776544
No 243
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.70 E-value=41 Score=25.80 Aligned_cols=34 Identities=32% Similarity=0.744 Sum_probs=22.9
Q ss_pred cCcccccccccccCCCeee-ecCCCCcccchhhHHHh
Q 024603 209 NEIGCSICLEKFEEGDSAR-KLPSCGHCFHSECVDKW 244 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r-~LP~CgH~FH~~CI~~W 244 (265)
....|.||... .+..+. .-+.|...||..|..+.
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 46789999887 332221 12248889999998764
No 244
>PF09719 C_GCAxxG_C_C: Putative redox-active protein (C_GCAxxG_C_C); InterPro: IPR010181 This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.; PDB: 1H21_A.
Probab=27.63 E-value=45 Score=26.09 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=19.4
Q ss_pred HHhhhcccccccccccccccccchhhHHHHHHHhh
Q 024603 62 IFGAMKGQTTETGFLHGAGIGAVAGAITALQLLES 96 (265)
Q Consensus 62 ~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~~~ 96 (265)
++-++.|+.-+-| -.|...||++||+.++.++-.
T Consensus 22 ~~~~a~gfggG~g-~~g~~CGAl~Ga~~~lgl~~g 55 (120)
T PF09719_consen 22 AIRMATGFGGGMG-GSGGTCGALSGAVMALGLVYG 55 (120)
T ss_dssp -GGGGGGGTTTTT-T---B-HHHHHHHHHHHHHS-
T ss_pred HHHHHHhhCCCcC-CCCCcccCcHHHHHHHHHHcC
Confidence 4455556644444 367778999999999987553
No 245
>PRK01343 zinc-binding protein; Provisional
Probab=27.39 E-value=42 Score=23.54 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=6.0
Q ss_pred CCccccccccc
Q 024603 249 GSCPVCRECVC 259 (265)
Q Consensus 249 ~sCPvCR~~v~ 259 (265)
..||+|++++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 34666665543
No 246
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=27.09 E-value=59 Score=27.83 Aligned_cols=18 Identities=22% Similarity=0.443 Sum_probs=13.1
Q ss_pred hcCCCCccccccccccCC
Q 024603 245 LTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 245 L~~~~sCPvCR~~v~~~~ 262 (265)
+.....||.|-..+...+
T Consensus 133 ~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred hhcCCcCCCCCCCCeecc
Confidence 345778999998876544
No 247
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=27.07 E-value=26 Score=32.79 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=29.2
Q ss_pred cCcccccccccccCCCeeee--cCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARK--LPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~--LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
....||+|=..-.... ++. -..=.|..|.-|-..|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4578999966532211 110 0122456777788889777888999975
No 248
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=27.06 E-value=1.1e+02 Score=29.42 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=37.6
Q ss_pred ccchhhhhhhhhcchhHHHHHHHhhhccchhhHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHhh
Q 024603 3 KGLVSEVIKMSLTCKETVSLWLFATMCAFGTGVLIRAMK-RVLYAALTCIFALGGAIVGTIFGA 65 (265)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ga~~g~ 65 (265)
-|||+|+.++-+| |+.|.- |.++... ..+....+ +++.-+|.++++=.|+.+|.++|+
T Consensus 314 ~G~~ag~vea~~r-~p~v~D--~~~l~~~--~s~~~~~~n~~~rvllv~~l~nlGs~igt~~~~ 372 (380)
T TIGR00261 314 TGMVAGLVEAYIR-KPTVKD--FENLQEA--ESIKEYFKNKVFRVLLVAILVNLGSTIGTIYGL 372 (380)
T ss_pred HHHHHHHHHhhcc-CCCHHH--HHHHhhc--ccHHHHHhcchHHHHHHHHHhhhHHHHHHHHHH
Confidence 5899999997666 444543 3333222 12333333 466667788888889999998887
No 249
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=26.51 E-value=60 Score=27.12 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=12.7
Q ss_pred CCCCccccccccccCCC
Q 024603 247 RNGSCPVCRECVCKDTD 263 (265)
Q Consensus 247 ~~~sCPvCR~~v~~~~~ 263 (265)
....||.|-..+...++
T Consensus 127 ~~F~Cp~Cg~~L~~~dn 143 (158)
T TIGR00373 127 LNFTCPRCGAMLDYLDN 143 (158)
T ss_pred cCCcCCCCCCEeeeccC
Confidence 47789999988765543
No 250
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.98 E-value=49 Score=29.63 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=19.0
Q ss_pred cchhhHHHhhcCCCCccccccccccC
Q 024603 236 FHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 236 FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
-|..|-..--+.-..||+|+..-.+.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccC
Confidence 46777777666778999999866443
No 251
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.94 E-value=60 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHhh
Q 024603 44 LYAALTCIFALGGAIVGTIFGA 65 (265)
Q Consensus 44 ~~~~~~~~~~~~g~~~ga~~g~ 65 (265)
+.++.|...+++|-++|+++|-
T Consensus 79 ~~g~~t~a~g~lG~L~GP~~G~ 100 (173)
T PF08566_consen 79 VYGLATLACGALGWLVGPSLGN 100 (173)
T ss_pred HHHHHHHHHHHHHHHhcchHHH
Confidence 4444555555566666666554
No 252
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.75 E-value=49 Score=24.44 Aligned_cols=44 Identities=23% Similarity=0.558 Sum_probs=27.0
Q ss_pred ccccccccccCCC-eeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 212 GCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 212 ~C~ICle~~~~~~-~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
.|--|-.|+..+. ..++.. =.|.||.+|...- -+..||.|-..+
T Consensus 7 nCECCDrDLpp~s~dA~ICt-fEcTFCadCae~~--l~g~CPnCGGel 51 (84)
T COG3813 7 NCECCDRDLPPDSTDARICT-FECTFCADCAENR--LHGLCPNCGGEL 51 (84)
T ss_pred CCcccCCCCCCCCCceeEEE-EeeehhHhHHHHh--hcCcCCCCCchh
Confidence 3444655554332 222221 3589999999864 377899997554
No 253
>PLN02248 cellulose synthase-like protein
Probab=25.37 E-value=51 Score=35.99 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=26.8
Q ss_pred CCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 231 SCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 231 ~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
.|++..|.+|...-++....||-|+.+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 489999999999999999999999998753
No 254
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=24.69 E-value=32 Score=19.98 Aligned_cols=9 Identities=56% Similarity=1.176 Sum_probs=7.1
Q ss_pred Ccccccccc
Q 024603 250 SCPVCRECV 258 (265)
Q Consensus 250 sCPvCR~~v 258 (265)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589998776
No 255
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=24.67 E-value=22 Score=25.73 Aligned_cols=18 Identities=33% Similarity=0.744 Sum_probs=13.3
Q ss_pred cccccccccccchhhHHH
Q 024603 73 TGFLHGAGIGAVAGAITA 90 (265)
Q Consensus 73 ~g~~~ga~~Ga~~gav~s 90 (265)
-|++.|+++|...|+|..
T Consensus 9 mG~~MG~~VG~~~G~l~G 26 (67)
T PF10247_consen 9 MGFMMGGAVGGAFGALFG 26 (67)
T ss_pred HHHHHhhHHHhhhhhhhh
Confidence 367777788888887774
No 256
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=24.51 E-value=41 Score=28.58 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=7.0
Q ss_pred hhhHHHHHHHhhh
Q 024603 54 LGGAIVGTIFGAM 66 (265)
Q Consensus 54 ~~g~~~ga~~g~~ 66 (265)
++|+++|++.++=
T Consensus 94 ~AG~~TGa~l~~r 106 (164)
T PTZ00236 94 ASGFFTGGVLAIR 106 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555555553
No 257
>PLN02195 cellulose synthase A
Probab=24.51 E-value=84 Score=33.93 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=36.0
Q ss_pred cCcccccccccccC---CCeeeecCCCCcccchhhHHHhh-cCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEE---GDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~---~~~~r~LP~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~~ 260 (265)
....|-||=++... ++.-.-+..|+--.|..|.+-=- +.++.||.|+....+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 34589999887753 34444455688889999984222 245679999998873
No 258
>COG2261 Predicted membrane protein [Function unknown]
Probab=23.99 E-value=1.4e+02 Score=22.56 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=28.4
Q ss_pred HHHHHhhhHHHHHHHhhhcccccccccccccccccchhhHHHHHHHh
Q 024603 49 TCIFALGGAIVGTIFGAMKGQTTETGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 49 ~~~~~~~g~~~ga~~g~~~g~~~~~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
+.+..++||++|-.....-|... .|+-=.+.+.|+-||++-+-+..
T Consensus 32 nIilGIVGA~vg~~l~~~~g~~~-~~~~~~~~i~avIGAvIll~i~~ 77 (82)
T COG2261 32 NIILGIVGAFVGGWLLGALGFGG-PGGNIASFIVAVIGAVILLAIVR 77 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555444 55555566688888887766554
No 259
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=23.71 E-value=49 Score=29.89 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=7.2
Q ss_pred HhhhHHHHHHHhh
Q 024603 53 ALGGAIVGTIFGA 65 (265)
Q Consensus 53 ~~~g~~~ga~~g~ 65 (265)
|++|+.+|+.+|+
T Consensus 120 a~~Gaa~G~~~~~ 132 (243)
T PRK13731 120 AAVGAALGAGITG 132 (243)
T ss_pred HHHHHHhhhhhhc
Confidence 4455556655554
No 260
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=23.71 E-value=51 Score=31.08 Aligned_cols=44 Identities=2% Similarity=-0.123 Sum_probs=31.9
Q ss_pred cCcccccccccccCCCeeeecCCCCc-ccchhhHHHhhcCCCCcccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH-~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
...+|..|-+.... .... .|+| .||.+|.. +.-..+||+|...+
T Consensus 342 s~~~~~~~~~~~~s---t~~~-~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWS-GGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee---eEee-cCCcccChhhhhh--cccCCccccccccc
Confidence 34678888766554 2333 5999 79999987 56778999997654
No 261
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=23.53 E-value=54 Score=30.12 Aligned_cols=44 Identities=32% Similarity=0.526 Sum_probs=28.3
Q ss_pred cCcccccccccccCCCeeeecCCCC-cccchhhHHHh-hcCCCCcc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKW-LTRNGSCP 252 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~Cg-H~FH~~CI~~W-L~~~~sCP 252 (265)
.-..|.||++--..+..-..|+.=. -.=|.+|..+| +.-+..||
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 3467888887766654433333121 14679999999 55677898
No 262
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.39 E-value=35 Score=30.81 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=31.6
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPV 253 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPv 253 (265)
+..|||-+..+.-+..-+ +|+|.|-.+-|.+.+... ..||.
T Consensus 189 ~nrCpitl~p~~~pils~---kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYPILSS---KCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhHHHHh---hhcccccHHHHHHHhcCCceeecch
Confidence 478999888877654432 799999999999998844 44773
No 263
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=22.80 E-value=34 Score=22.69 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=14.6
Q ss_pred cCCCCcccchhhHHHhhcCCCCcccccc
Q 024603 229 LPSCGHCFHSECVDKWLTRNGSCPVCRE 256 (265)
Q Consensus 229 LP~CgH~FH~~CI~~WL~~~~sCPvCR~ 256 (265)
.++|||.|-..--.. -.....||.|..
T Consensus 8 C~~Cg~~fe~~~~~~-~~~~~~CP~Cg~ 34 (52)
T TIGR02605 8 CTACGHRFEVLQKMS-DDPLATCPECGG 34 (52)
T ss_pred eCCCCCEeEEEEecC-CCCCCCCCCCCC
Confidence 346888776331100 012346999986
No 264
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.70 E-value=33 Score=32.32 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=30.9
Q ss_pred cCcccccccccccCCCeeeecCCCCc-ccchhhHHHh-hcCCCCcccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGH-CFHSECVDKW-LTRNGSCPVCRECV 258 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH-~FH~~CI~~W-L~~~~sCPvCR~~v 258 (265)
....|.+|... ....... .|+| .||..|..+- .++..+||+|...+
T Consensus 135 ~ti~~iqq~tn---t~I~T~v-~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~ 182 (394)
T KOG2113|consen 135 ATIKRIQQFTN---TYIATPV-RCGEPVFCVTGAPKNCVKRARSCEIEQTAV 182 (394)
T ss_pred Cccchheeccc---ceEeeec-cCCCceEEEecCCcchhhhccccchhhhhh
Confidence 34567666443 3334344 4998 8999997665 66777899997644
No 265
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=22.69 E-value=46 Score=26.57 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCCeeeecCCCCc---ccchhhHHHhhcCC---CCcccccccccc
Q 024603 222 EGDSARKLPSCGH---CFHSECVDKWLTRN---GSCPVCRECVCK 260 (265)
Q Consensus 222 ~~~~~r~LP~CgH---~FH~~CI~~WL~~~---~sCPvCR~~v~~ 260 (265)
.+..-++.|+||| .||-.=++.-=+.+ -+||-|......
T Consensus 70 ga~I~~kCpkCghe~m~Y~T~QlRSADEGQTVFYTC~kC~~k~~e 114 (116)
T KOG2907|consen 70 GAVIKHKCPKCGHEEMSYHTLQLRSADEGQTVFYTCPKCKYKFTE 114 (116)
T ss_pred ccchhccCcccCCchhhhhhhhcccccCCceEEEEcCccceeeec
Confidence 3445567889999 56654433321222 259999875543
No 266
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=22.65 E-value=41 Score=19.92 Aligned_cols=12 Identities=33% Similarity=1.085 Sum_probs=5.9
Q ss_pred CccccccccccC
Q 024603 250 SCPVCRECVCKD 261 (265)
Q Consensus 250 sCPvCR~~v~~~ 261 (265)
.||.|...+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 489998888643
No 267
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=22.59 E-value=44 Score=28.06 Aligned_cols=26 Identities=35% Similarity=0.879 Sum_probs=13.6
Q ss_pred cccccccccccC-------CCeeeecCCCCcccc
Q 024603 211 IGCSICLEKFEE-------GDSARKLPSCGHCFH 237 (265)
Q Consensus 211 ~~C~ICle~~~~-------~~~~r~LP~CgH~FH 237 (265)
.-| +|.+|-.. .......|.|||.|-
T Consensus 112 VGC-~c~eD~~~V~Wmwl~Kge~~rc~eCG~~fk 144 (153)
T KOG3352|consen 112 VGC-GCEEDSHAVVWMWLEKGETQRCPECGHYFK 144 (153)
T ss_pred Eee-cccCCCcceEEEEEEcCCcccCCcccceEE
Confidence 457 78776433 112223556777664
No 268
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.50 E-value=58 Score=25.63 Aligned_cols=17 Identities=24% Similarity=0.874 Sum_probs=11.6
Q ss_pred CCCcccchhhH----HHhhcC
Q 024603 231 SCGHCFHSECV----DKWLTR 247 (265)
Q Consensus 231 ~CgH~FH~~CI----~~WL~~ 247 (265)
.|+|.+|..|- .+|+..
T Consensus 57 SCk~R~CP~C~~~~~~~W~~~ 77 (111)
T PF14319_consen 57 SCKNRHCPSCQAKATEQWIEK 77 (111)
T ss_pred cccCcCCCCCCChHHHHHHHH
Confidence 58888887773 567653
No 269
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=22.45 E-value=62 Score=24.65 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=9.8
Q ss_pred HHhhhHHHHHHHhhhcccc
Q 024603 52 FALGGAIVGTIFGAMKGQT 70 (265)
Q Consensus 52 ~~~~g~~~ga~~g~~~g~~ 70 (265)
..++++++||+++++.++.
T Consensus 24 ~~i~~~~~~a~i~~l~~~~ 42 (112)
T PF14015_consen 24 ASIILSVLGAVIPVLASLS 42 (112)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555566544444
No 270
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=22.35 E-value=52 Score=25.19 Aligned_cols=39 Identities=23% Similarity=0.623 Sum_probs=28.9
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...|-||-....+ =||.||..|.- ++..|.+|=+.+.+.
T Consensus 44 ~~~C~~CK~~v~q---------~g~~YCq~CAY----kkGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQ---------PGAKYCQTCAY----KKGICAMCGKKILDT 82 (90)
T ss_pred Ccccccccccccc---------CCCccChhhhc----ccCcccccCCeeccc
Confidence 4689999765443 47789999964 367899999888543
No 271
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=22.31 E-value=20 Score=33.30 Aligned_cols=44 Identities=23% Similarity=0.535 Sum_probs=31.3
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
-...|+-|.+.+.....+|+- =.|+||..|. .|-+|++.+...+
T Consensus 91 fGTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~TGd 134 (383)
T KOG4577|consen 91 FGTKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLATGD 134 (383)
T ss_pred hCCcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhcccccCC
Confidence 356799998888776666654 4789998885 4677777665443
No 272
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=22.29 E-value=29 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred cccccccccccccccchhhHHHHHHHh
Q 024603 69 QTTETGFLHGAGIGAVAGAITALQLLE 95 (265)
Q Consensus 69 ~~~~~g~~~ga~~Ga~~gav~s~e~~~ 95 (265)
+...++++-|...|+|+|+++++-++-
T Consensus 4 ~~~~~~vlaavIaG~Vvgll~ailLIl 30 (64)
T PF01034_consen 4 IFERSEVLAAVIAGGVVGLLFAILLIL 30 (64)
T ss_dssp ---------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345677887777788889888887664
No 273
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=22.11 E-value=17 Score=33.74 Aligned_cols=50 Identities=16% Similarity=0.472 Sum_probs=0.0
Q ss_pred hhcccCcccccccc-cccCCCeeeecCCCCcccchhhHHHhhcCCCC-------cccc
Q 024603 205 IQLDNEIGCSICLE-KFEEGDSARKLPSCGHCFHSECVDKWLTRNGS-------CPVC 254 (265)
Q Consensus 205 ~~~~~~~~C~ICle-~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~s-------CPvC 254 (265)
..+.+...|.+|-. .|..-+.--..-.||++||..|-..-+.-+.. |+.|
T Consensus 163 ~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~C 220 (288)
T KOG1729|consen 163 LPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDIC 220 (288)
T ss_pred cCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHH
No 274
>PF04829 PT-VENN: Pre-toxin domain with VENN motif; InterPro: IPR006914 This group of proteins, mainly from Neisseria meningitidis, may have haemagglutinin or haemolysin activity. A number of them have a second conserved domain, IPR006915 from INTERPRO, which is found in possible Pseudomonas aeruginosa haemagglutinins []. Filamentous haemagglutinin (FHA) is a major virulence attachment factor produced by certain bacterial species that functions as both a primary adhesin and an immunomodulator. Haemolysin is pore-forming toxin.
Probab=22.09 E-value=42 Score=23.27 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=5.1
Q ss_pred HHHHHHhhhcc
Q 024603 58 IVGTIFGAMKG 68 (265)
Q Consensus 58 ~~ga~~g~~~g 68 (265)
++|.++|++.|
T Consensus 19 l~ag~ag~~~g 29 (55)
T PF04829_consen 19 LAAGVAGALAG 29 (55)
T ss_pred HHHHHHHHHHc
Confidence 44444444444
No 275
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=22.01 E-value=2e+02 Score=27.68 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred CccchhhhhhhhhcchhHHHH-HHHhhhccchhhHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHhhh
Q 024603 2 SKGLVSEVIKMSLTCKETVSL-WLFATMCAFGTGVLIRAMK-RVLYAALTCIFALGGAIVGTIFGAM 66 (265)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ga~~g~~ 66 (265)
-.|||.|+.++-++ ++.+-- -.+ ...- .+.-..+ +++.-+|+..|.=.|+++|.++|+.
T Consensus 321 a~G~faglvEa~~r-~p~v~D~~~L---~~~~--~~~g~~~N~~~rvlLv~~~tNlGs~iGt~~~~~ 381 (388)
T COG1916 321 AVGWFAGLVEAWYR-KPTVKDFETL---ADDL--SFKGMYKNKFFRVLLVVAFTNLGSMIGTFIGLP 381 (388)
T ss_pred hhHHHHHHHHHHhc-CccHhHHHHH---hhHH--HHHHHHhchhHHHHHHHHHhhhhhHHHHHHHHH
Confidence 46899999997665 444422 122 1111 1333343 3455567788888999999998874
No 276
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.98 E-value=54 Score=23.51 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=5.2
Q ss_pred hhHHHHHHHhhh
Q 024603 55 GGAIVGTIFGAM 66 (265)
Q Consensus 55 ~g~~~ga~~g~~ 66 (265)
-|+++||+++++
T Consensus 54 ~r~iiGaiI~~i 65 (71)
T PF10779_consen 54 WRTIIGAIITAI 65 (71)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 277
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=40 Score=25.94 Aligned_cols=12 Identities=25% Similarity=0.916 Sum_probs=10.5
Q ss_pred ccchhhHHHhhc
Q 024603 235 CFHSECVDKWLT 246 (265)
Q Consensus 235 ~FH~~CI~~WL~ 246 (265)
-||..|+.+|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 278
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=29 Score=35.51 Aligned_cols=47 Identities=28% Similarity=0.547 Sum_probs=32.3
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc--------CCCCcccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVC 254 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~--------~~~sCPvC 254 (265)
.+.+.|-.|.-.|..-.+-..+-.||-+||..|-.+-+. ..+.|-.|
T Consensus 163 ~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C 217 (634)
T KOG1818|consen 163 IDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSC 217 (634)
T ss_pred ccccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhh
Confidence 345899999999876443333447999999999765543 22457777
No 279
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=21.01 E-value=31 Score=31.53 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=19.1
Q ss_pred CCC-cccchhhHHHhhcCCC--Cccccccccc
Q 024603 231 SCG-HCFHSECVDKWLTRNG--SCPVCRECVC 259 (265)
Q Consensus 231 ~Cg-H~FH~~CI~~WL~~~~--sCPvCR~~v~ 259 (265)
.|. -.||..|+.--..... .||-|+....
T Consensus 239 ~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 239 GCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 577 7999999843222122 3999987543
No 280
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.92 E-value=53 Score=34.76 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=25.4
Q ss_pred cccccccccccCCC---eeee--cCCCCcccchhhHHHhh
Q 024603 211 IGCSICLEKFEEGD---SARK--LPSCGHCFHSECVDKWL 245 (265)
Q Consensus 211 ~~C~ICle~~~~~~---~~r~--LP~CgH~FH~~CI~~WL 245 (265)
..|..|...|..-. ..|+ +-+||++||..|-.+..
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 56999999996421 1222 55899999999987654
No 281
>PHA00380 tail protein
Probab=20.89 E-value=70 Score=31.95 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-----cccccccccccccchhhHHHHHHHhhh
Q 024603 44 LYAALTCIFALGGAIVGTIFGAMKGQT-----TETGFLHGAGIGAVAGAITALQLLESA 97 (265)
Q Consensus 44 ~~~~~~~~~~~~g~~~ga~~g~~~g~~-----~~~g~~~ga~~Ga~~gav~s~e~~~~~ 97 (265)
=++++..|...+|..++|+-||+.|.+ ++.|++.-|+ -||+.++-+.+.
T Consensus 429 ds~~~~gi~~~~g~~~~a~gsa~~g~a~g~a~s~~~~~~tag-----nav~~~q~~qA~ 482 (599)
T PHA00380 429 DSILFNGIMNMIGSGISAVGSAAAGSALGTASSATGMVSTAG-----NAVLQIQGMQAK 482 (599)
T ss_pred hhhhhhhHHHHhhcchhhcccccccccccccccccchhhhhh-----hHHHhHHhhHhh
Confidence 356678888888988888888888775 4445544433 367777766654
No 282
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.70 E-value=64 Score=22.45 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=5.4
Q ss_pred Cccccccc
Q 024603 250 SCPVCREC 257 (265)
Q Consensus 250 sCPvCR~~ 257 (265)
-||-||+.
T Consensus 30 yCpKCK~E 37 (55)
T PF14205_consen 30 YCPKCKQE 37 (55)
T ss_pred cCCCCCce
Confidence 37777764
No 283
>PF14353 CpXC: CpXC protein
Probab=20.64 E-value=58 Score=25.80 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=4.8
Q ss_pred Ccccccccc
Q 024603 250 SCPVCRECV 258 (265)
Q Consensus 250 sCPvCR~~v 258 (265)
+||.|....
T Consensus 40 ~CP~Cg~~~ 48 (128)
T PF14353_consen 40 TCPSCGHKF 48 (128)
T ss_pred ECCCCCCce
Confidence 366665543
No 284
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=20.04 E-value=43 Score=21.82 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=14.4
Q ss_pred cCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 229 LPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 229 LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.|+||..|..+=.. ....||.|..++.
T Consensus 6 C~~CG~~~~~~~~~----~~~~Cp~CG~~~~ 32 (46)
T PRK00398 6 CARCGREVELDEYG----TGVRCPYCGYRIL 32 (46)
T ss_pred CCCCCCEEEECCCC----CceECCCCCCeEE
Confidence 44566655532110 1356888877664
No 285
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=20.01 E-value=63 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.1
Q ss_pred cccccccccccccchhhHHHHH
Q 024603 71 TETGFLHGAGIGAVAGAITALQ 92 (265)
Q Consensus 71 ~~~g~~~ga~~Ga~~gav~s~e 92 (265)
.|.++.+-..--|++|+++++-
T Consensus 39 ~~~~~~e~l~~Aaisgav~avv 60 (78)
T PF14019_consen 39 PDRSLREALAFAAISGAVFAVV 60 (78)
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 4557777777788888888766
Done!