Query 024603
Match_columns 265
No_of_seqs 301 out of 1830
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.4E-17 4.7E-22 126.2 6.0 80 179-260 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.1E-17 1E-21 119.5 2.3 71 189-262 4-74 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1.1E-15 3.7E-20 104.4 4.2 52 208-259 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 2.3E-15 8E-20 108.9 3.9 55 207-262 12-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 4E-15 1.4E-19 106.2 4.7 55 207-262 11-65 (69)
6 2ect_A Ring finger protein 126 99.5 4.3E-15 1.5E-19 108.6 4.3 54 207-261 12-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.7E-14 5.9E-19 106.9 2.9 51 210-260 15-76 (81)
8 2ecn_A Ring finger protein 141 99.4 2.6E-14 8.8E-19 102.3 2.9 54 207-265 12-65 (70)
9 3ng2_A RNF4, snurf, ring finge 99.4 2.4E-14 8.2E-19 102.4 2.6 54 207-261 7-64 (71)
10 1v87_A Deltex protein 2; ring- 99.4 7.7E-14 2.6E-18 109.0 4.8 52 209-261 24-95 (114)
11 2ecm_A Ring finger and CHY zin 99.4 6E-14 2.1E-18 95.5 3.4 50 209-259 4-54 (55)
12 2ea6_A Ring finger protein 4; 99.4 5.8E-14 2E-18 99.6 2.5 53 207-260 12-68 (69)
13 2xeu_A Ring finger protein 4; 99.4 6.1E-14 2.1E-18 98.0 2.5 52 209-261 2-57 (64)
14 2djb_A Polycomb group ring fin 99.4 2.1E-13 7.1E-18 98.3 3.0 53 207-262 12-64 (72)
15 3dpl_R Ring-box protein 1; ubi 99.3 4.2E-13 1.4E-17 104.7 4.2 50 209-259 36-100 (106)
16 1chc_A Equine herpes virus-1 r 99.3 3E-13 1E-17 96.0 3.0 49 209-260 4-52 (68)
17 2ct2_A Tripartite motif protei 99.3 5.4E-13 1.9E-17 99.0 3.7 54 207-261 12-69 (88)
18 2d8t_A Dactylidin, ring finger 99.3 3.8E-13 1.3E-17 96.7 2.5 50 207-260 12-61 (71)
19 2ecy_A TNF receptor-associated 99.3 1E-12 3.5E-17 93.0 3.8 51 207-261 12-63 (66)
20 2yur_A Retinoblastoma-binding 99.3 9.2E-13 3.1E-17 95.6 2.7 53 207-262 12-66 (74)
21 2ysl_A Tripartite motif-contai 99.3 1.4E-12 4.9E-17 93.6 3.5 52 207-262 17-71 (73)
22 4ayc_A E3 ubiquitin-protein li 99.3 9.9E-13 3.4E-17 106.6 2.6 50 208-261 51-100 (138)
23 2d8s_A Cellular modulator of i 99.3 1.8E-12 6.3E-17 96.1 3.4 54 207-262 12-72 (80)
24 2csy_A Zinc finger protein 183 99.3 1.4E-12 4.7E-17 96.0 2.4 49 207-259 12-60 (81)
25 1t1h_A Gspef-atpub14, armadill 99.2 3.2E-12 1.1E-16 93.1 3.7 51 207-261 5-56 (78)
26 1g25_A CDK-activating kinase a 99.2 3.9E-12 1.3E-16 89.7 3.9 52 209-261 2-56 (65)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 2.5E-12 8.6E-17 101.9 3.3 53 208-261 5-61 (133)
28 2y43_A E3 ubiquitin-protein li 99.2 2.4E-12 8.1E-17 98.2 2.8 51 207-260 19-69 (99)
29 3lrq_A E3 ubiquitin-protein li 99.2 1.3E-12 4.3E-17 100.4 0.9 53 206-261 18-71 (100)
30 4a0k_B E3 ubiquitin-protein li 99.2 9.7E-13 3.3E-17 104.4 0.2 51 209-259 47-111 (117)
31 2egp_A Tripartite motif-contai 99.2 2.3E-12 7.7E-17 93.9 1.8 50 207-260 9-65 (79)
32 2ecw_A Tripartite motif-contai 99.2 5.9E-12 2E-16 92.4 3.1 51 207-261 16-72 (85)
33 2ckl_A Polycomb group ring fin 99.2 7.4E-12 2.5E-16 97.0 3.8 53 206-261 11-63 (108)
34 2ecv_A Tripartite motif-contai 99.2 7.5E-12 2.6E-16 91.8 3.2 51 207-261 16-72 (85)
35 3ztg_A E3 ubiquitin-protein li 99.2 9.4E-12 3.2E-16 93.4 2.8 50 207-259 10-61 (92)
36 1e4u_A Transcriptional repress 99.2 2E-11 6.9E-16 90.0 4.5 58 207-265 8-67 (78)
37 3fl2_A E3 ubiquitin-protein li 99.1 1E-11 3.4E-16 98.6 2.6 50 207-260 49-99 (124)
38 2ysj_A Tripartite motif-contai 99.1 1.7E-11 5.9E-16 85.7 3.3 44 207-254 17-63 (63)
39 2ckl_B Ubiquitin ligase protei 99.1 1.9E-11 6.3E-16 101.6 3.5 50 208-260 52-102 (165)
40 2ct0_A Non-SMC element 1 homol 99.1 3.7E-11 1.3E-15 87.8 4.5 51 209-262 14-66 (74)
41 2ecj_A Tripartite motif-contai 99.1 2.7E-11 9.1E-16 82.9 3.3 44 207-254 12-58 (58)
42 4ap4_A E3 ubiquitin ligase RNF 99.1 1.5E-11 5E-16 97.4 2.0 53 208-261 70-126 (133)
43 1jm7_A BRCA1, breast cancer ty 99.1 2.4E-11 8.3E-16 94.1 2.7 50 208-261 19-71 (112)
44 1rmd_A RAG1; V(D)J recombinati 99.1 1.8E-11 6.2E-16 95.9 1.7 51 207-261 20-71 (116)
45 1z6u_A NP95-like ring finger p 99.1 2.2E-11 7.7E-16 100.3 1.3 51 207-261 75-126 (150)
46 2vje_A E3 ubiquitin-protein li 99.1 2.8E-11 9.6E-16 85.6 1.1 52 208-261 6-58 (64)
47 2kre_A Ubiquitin conjugation f 99.0 7E-11 2.4E-15 91.0 3.2 51 207-261 26-76 (100)
48 3l11_A E3 ubiquitin-protein li 99.0 2.6E-11 8.9E-16 94.8 0.3 48 208-259 13-61 (115)
49 3hct_A TNF receptor-associated 99.0 4.4E-11 1.5E-15 94.2 1.4 51 207-261 15-66 (118)
50 2kr4_A Ubiquitin conjugation f 99.0 1E-10 3.5E-15 87.3 2.3 51 207-261 11-61 (85)
51 1wgm_A Ubiquitin conjugation f 99.0 1.9E-10 6.4E-15 88.3 3.6 51 207-261 19-70 (98)
52 1bor_A Transcription factor PM 99.0 1.1E-10 3.8E-15 80.2 2.0 48 208-262 4-51 (56)
53 2vje_B MDM4 protein; proto-onc 99.0 7.8E-11 2.7E-15 83.1 1.2 52 208-261 5-57 (63)
54 1jm7_B BARD1, BRCA1-associated 99.0 1.7E-10 5.8E-15 90.7 2.3 50 206-260 18-67 (117)
55 3knv_A TNF receptor-associated 99.0 1.8E-10 6.2E-15 93.9 2.4 50 206-259 27-77 (141)
56 4ic3_A E3 ubiquitin-protein li 98.9 1.1E-10 3.7E-15 84.8 0.1 50 206-263 20-70 (74)
57 2ecg_A Baculoviral IAP repeat- 98.9 7.4E-10 2.5E-14 80.4 2.3 51 207-265 22-73 (75)
58 2y1n_A E3 ubiquitin-protein li 98.9 9.4E-10 3.2E-14 103.3 3.6 49 209-261 331-380 (389)
59 3hcs_A TNF receptor-associated 98.8 1.3E-09 4.4E-14 90.8 1.4 51 207-261 15-66 (170)
60 2yho_A E3 ubiquitin-protein li 98.8 9.7E-10 3.3E-14 80.9 0.5 47 207-261 15-62 (79)
61 3k1l_B Fancl; UBC, ring, RWD, 98.8 2.6E-09 9E-14 98.4 3.5 55 207-261 305-374 (381)
62 2c2l_A CHIP, carboxy terminus 98.8 1.8E-09 6.2E-14 95.4 2.2 49 208-260 206-255 (281)
63 2ea5_A Cell growth regulator w 98.8 2.8E-09 9.7E-14 76.2 2.6 48 208-263 13-61 (68)
64 2yu4_A E3 SUMO-protein ligase 98.7 2.2E-09 7.5E-14 81.4 1.4 47 208-257 5-59 (94)
65 1wim_A KIAA0161 protein; ring 98.7 4.8E-09 1.6E-13 79.2 2.8 48 209-257 4-61 (94)
66 2f42_A STIP1 homology and U-bo 98.6 1.3E-08 4.4E-13 86.2 2.2 50 207-260 103-153 (179)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.5E-08 8.5E-13 69.7 2.8 50 207-259 3-58 (60)
68 3t6p_A Baculoviral IAP repeat- 98.5 2.8E-08 9.6E-13 92.2 1.0 50 206-263 291-341 (345)
69 3htk_C E3 SUMO-protein ligase 98.5 4.5E-08 1.5E-12 87.3 2.1 50 208-260 179-232 (267)
70 2bay_A PRE-mRNA splicing facto 98.4 9.5E-08 3.2E-12 66.9 2.1 49 210-261 3-51 (61)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.1E-06 3.6E-11 67.2 3.5 46 212-260 3-49 (101)
72 3nw0_A Non-structural maintena 97.9 7.6E-06 2.6E-10 72.1 5.1 50 209-261 179-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.3 0.0095 3.3E-07 44.6 2.9 36 209-245 2-38 (101)
74 2ko5_A Ring finger protein Z; 95.2 0.0079 2.7E-07 45.2 2.1 50 207-261 25-74 (99)
75 2lri_C Autoimmune regulator; Z 94.5 0.03 1E-06 39.3 3.6 48 208-259 10-61 (66)
76 1we9_A PHD finger family prote 94.3 0.022 7.6E-07 39.3 2.3 51 208-258 4-59 (64)
77 2l5u_A Chromodomain-helicase-D 92.4 0.091 3.1E-06 36.1 3.0 47 207-257 8-58 (61)
78 2cs3_A Protein C14ORF4, MY039 92.1 0.11 3.7E-06 38.0 3.2 40 208-247 13-52 (93)
79 2k16_A Transcription initiatio 91.7 0.074 2.5E-06 37.8 1.9 53 208-261 16-72 (75)
80 2puy_A PHD finger protein 21A; 91.2 0.053 1.8E-06 37.0 0.7 51 209-263 4-58 (60)
81 1wil_A KIAA1045 protein; ring 90.3 0.18 6.3E-06 37.1 2.9 35 208-244 13-47 (89)
82 1mm2_A MI2-beta; PHD, zinc fin 90.3 0.085 2.9E-06 36.2 1.1 49 207-259 6-58 (61)
83 2xb1_A Pygopus homolog 2, B-ce 90.1 0.079 2.7E-06 40.5 0.8 49 210-258 3-62 (105)
84 2kgg_A Histone demethylase jar 89.1 0.33 1.1E-05 32.0 3.3 45 211-255 3-52 (52)
85 2yql_A PHD finger protein 21A; 88.6 0.098 3.3E-06 35.2 0.4 46 207-256 6-55 (56)
86 1fp0_A KAP-1 corepressor; PHD 87.1 0.35 1.2E-05 35.8 2.6 47 207-257 22-72 (88)
87 1wee_A PHD finger family prote 87.1 0.16 5.3E-06 35.9 0.6 51 209-260 15-69 (72)
88 2ku3_A Bromodomain-containing 86.9 0.27 9.1E-06 34.9 1.8 51 207-257 13-66 (71)
89 2l43_A N-teminal domain from h 86.8 0.26 8.7E-06 36.4 1.7 53 207-259 22-77 (88)
90 2vpb_A Hpygo1, pygopus homolog 86.4 0.48 1.6E-05 32.9 2.9 35 207-241 5-40 (65)
91 1f62_A Transcription factor WS 86.3 0.44 1.5E-05 31.0 2.5 44 212-256 2-49 (51)
92 1wep_A PHF8; structural genomi 86.2 0.48 1.7E-05 33.9 2.9 49 209-258 11-64 (79)
93 1xwh_A Autoimmune regulator; P 86.1 0.25 8.6E-06 34.2 1.3 47 208-258 6-56 (66)
94 3v43_A Histone acetyltransfera 86.0 0.33 1.1E-05 37.2 2.0 45 212-256 63-111 (112)
95 2ri7_A Nucleosome-remodeling f 85.5 0.45 1.6E-05 38.9 2.8 49 208-257 6-59 (174)
96 1wem_A Death associated transc 84.2 0.41 1.4E-05 34.0 1.7 49 210-260 16-73 (76)
97 2yt5_A Metal-response element- 84.1 0.35 1.2E-05 33.2 1.3 51 208-258 4-62 (66)
98 3o70_A PHD finger protein 13; 83.8 0.39 1.3E-05 33.7 1.4 47 208-256 17-66 (68)
99 1z60_A TFIIH basal transcripti 83.7 0.9 3.1E-05 31.1 3.2 44 210-254 15-58 (59)
100 1weu_A Inhibitor of growth fam 83.7 0.64 2.2E-05 34.6 2.6 48 208-260 34-88 (91)
101 3m62_A Ubiquitin conjugation f 83.3 0.57 2E-05 48.4 2.9 50 208-261 889-939 (968)
102 1wen_A Inhibitor of growth fam 83.2 0.76 2.6E-05 32.4 2.7 47 208-259 14-67 (71)
103 3c6w_A P28ING5, inhibitor of g 81.3 0.69 2.4E-05 31.4 1.9 43 209-256 8-57 (59)
104 2e6r_A Jumonji/ARID domain-con 81.1 0.3 1E-05 36.2 -0.0 49 208-257 14-66 (92)
105 2vnf_A ING 4, P29ING4, inhibit 80.7 0.72 2.5E-05 31.4 1.8 43 209-256 9-58 (60)
106 1wev_A Riken cDNA 1110020M19; 80.5 0.36 1.2E-05 35.5 0.2 53 208-260 14-75 (88)
107 1wew_A DNA-binding family prot 80.0 0.8 2.7E-05 32.7 1.9 52 208-261 14-76 (78)
108 1z2q_A LM5-1; membrane protein 79.7 0.32 1.1E-05 35.4 -0.3 54 208-261 19-80 (84)
109 2rsd_A E3 SUMO-protein ligase 79.4 0.26 9E-06 34.4 -0.9 46 209-256 9-64 (68)
110 1y02_A CARP2, FYVE-ring finger 77.3 0.5 1.7E-05 37.0 0.1 49 209-257 18-66 (120)
111 2g6q_A Inhibitor of growth pro 76.9 1.1 3.8E-05 30.7 1.8 44 209-257 10-60 (62)
112 2lv9_A Histone-lysine N-methyl 76.4 1.2 4.1E-05 33.3 2.0 45 210-256 28-75 (98)
113 3t7l_A Zinc finger FYVE domain 76.1 1.8 6.3E-05 31.7 3.0 51 209-259 19-75 (90)
114 1joc_A EEA1, early endosomal a 75.5 1.8 6.2E-05 33.7 3.0 37 209-245 68-104 (125)
115 2ysm_A Myeloid/lymphoid or mix 74.7 1.3 4.6E-05 33.4 2.0 38 208-246 5-42 (111)
116 3v43_A Histone acetyltransfera 74.2 3.8 0.00013 31.0 4.5 34 209-242 4-42 (112)
117 1zbd_B Rabphilin-3A; G protein 74.0 1 3.5E-05 35.8 1.1 50 208-257 53-107 (134)
118 2yw8_A RUN and FYVE domain-con 74.0 1.9 6.6E-05 31.0 2.5 52 208-259 17-74 (82)
119 3asl_A E3 ubiquitin-protein li 73.5 1.5 5.1E-05 30.7 1.8 45 212-257 20-69 (70)
120 2lbm_A Transcriptional regulat 73.2 3.5 0.00012 33.0 4.1 46 207-256 60-116 (142)
121 3ask_A E3 ubiquitin-protein li 72.5 1.5 5.2E-05 37.8 2.0 47 210-257 174-225 (226)
122 1vfy_A Phosphatidylinositol-3- 72.3 2.6 8.7E-05 29.6 2.8 34 211-244 12-45 (73)
123 1x4u_A Zinc finger, FYVE domai 71.8 2.1 7.4E-05 30.8 2.4 37 208-244 12-48 (84)
124 4gne_A Histone-lysine N-methyl 70.8 3.5 0.00012 31.4 3.5 47 207-259 12-64 (107)
125 2kwj_A Zinc finger protein DPF 70.0 3 0.0001 31.8 3.0 34 211-244 2-41 (114)
126 3o7a_A PHD finger protein 13 v 69.7 2 6.7E-05 28.1 1.6 41 215-256 8-51 (52)
127 3shb_A E3 ubiquitin-protein li 69.7 1.4 4.8E-05 31.6 0.9 45 212-257 28-77 (77)
128 1dvp_A HRS, hepatocyte growth 69.6 2.3 7.7E-05 36.1 2.4 35 210-244 161-195 (220)
129 1wfk_A Zinc finger, FYVE domai 69.2 3.1 0.00011 30.4 2.8 51 209-259 8-65 (88)
130 3i2d_A E3 SUMO-protein ligase 68.8 2.1 7.3E-05 39.6 2.2 47 210-259 249-299 (371)
131 3zyq_A Hepatocyte growth facto 68.7 2.4 8.4E-05 36.2 2.4 52 209-260 163-222 (226)
132 2e6s_A E3 ubiquitin-protein li 68.5 2.2 7.6E-05 30.5 1.8 46 210-256 26-76 (77)
133 2jmi_A Protein YNG1, ING1 homo 67.3 1.9 6.6E-05 31.9 1.3 44 208-256 24-75 (90)
134 4fo9_A E3 SUMO-protein ligase 67.3 2.4 8.2E-05 39.1 2.2 48 210-260 215-266 (360)
135 2zet_C Melanophilin; complex, 67.0 1.8 6E-05 35.2 1.1 48 209-257 67-117 (153)
136 3ql9_A Transcriptional regulat 66.6 6.5 0.00022 30.9 4.3 46 208-257 55-111 (129)
137 3kqi_A GRC5, PHD finger protei 66.1 2.6 8.9E-05 29.7 1.8 47 211-258 11-62 (75)
138 3mpx_A FYVE, rhogef and PH dom 64.0 1.4 4.9E-05 40.6 0.0 51 209-259 374-431 (434)
139 2kwj_A Zinc finger protein DPF 61.9 1.7 5.8E-05 33.2 0.1 49 212-261 60-112 (114)
140 2a20_A Regulating synaptic mem 57.3 1.9 6.6E-05 29.4 -0.3 51 207-257 6-60 (62)
141 2jne_A Hypothetical protein YF 56.6 1 3.6E-05 33.9 -1.9 41 210-259 32-72 (101)
142 2ysm_A Myeloid/lymphoid or mix 56.5 4.4 0.00015 30.5 1.6 46 212-258 56-105 (111)
143 1weo_A Cellulose synthase, cat 55.2 19 0.00064 26.6 4.7 51 209-259 15-69 (93)
144 2gmg_A Hypothetical protein PF 52.9 3.3 0.00011 31.5 0.3 23 231-258 72-94 (105)
145 2jmo_A Parkin; IBR, E3 ligase, 49.8 2.8 9.4E-05 30.0 -0.5 20 231-252 55-74 (80)
146 2lbg_A Major prion protein; co 49.7 7.5 0.00026 22.1 1.4 15 54-68 8-22 (27)
147 1iml_A CRIP, cysteine rich int 49.3 11 0.00037 25.8 2.6 43 210-257 27-70 (76)
148 2cu8_A Cysteine-rich protein 2 47.4 12 0.00041 25.6 2.6 39 210-259 9-47 (76)
149 2ct7_A Ring finger protein 31; 46.3 3.1 0.00011 30.1 -0.7 32 226-257 43-76 (86)
150 3mjh_B Early endosome antigen 45.7 2.2 7.7E-05 25.8 -1.3 17 210-226 5-21 (34)
151 3kv5_D JMJC domain-containing 43.9 6.2 0.00021 37.7 0.8 47 210-257 37-88 (488)
152 3ldt_A Outer membrane protein, 42.5 5.3 0.00018 32.4 0.1 11 80-90 11-21 (169)
153 1wyh_A SLIM 2, skeletal muscle 40.4 26 0.00089 23.3 3.4 40 210-259 5-44 (72)
154 3a1b_A DNA (cytosine-5)-methyl 39.8 21 0.00073 29.0 3.3 35 208-246 77-113 (159)
155 2dj7_A Actin-binding LIM prote 39.6 22 0.00074 24.8 2.9 40 209-259 14-53 (80)
156 3arc_X Photosystem II PSBX pro 39.6 12 0.00041 23.3 1.3 21 54-74 15-35 (39)
157 2d8z_A Four and A half LIM dom 39.4 21 0.00073 23.7 2.8 26 211-240 6-31 (70)
158 3ldt_A Outer membrane protein, 39.3 5.1 0.00017 32.5 -0.6 11 55-65 4-14 (169)
159 2jrp_A Putative cytoplasmic pr 37.7 12 0.00042 27.0 1.4 12 211-222 3-14 (81)
160 1g47_A Pinch protein; LIM doma 37.3 21 0.00073 24.1 2.6 42 209-260 10-51 (77)
161 2co8_A NEDD9 interacting prote 36.9 25 0.00085 24.5 2.9 40 209-259 14-53 (82)
162 3bz1_X Photosystem II PSBX pro 36.4 18 0.00062 23.7 1.9 24 54-77 25-48 (50)
163 2lcq_A Putative toxin VAPC6; P 36.4 11 0.00038 30.1 1.1 29 227-261 133-161 (165)
164 1a7i_A QCRP2 (LIM1); LIM domai 36.3 13 0.00045 25.7 1.3 27 211-240 8-34 (81)
165 2cor_A Pinch protein; LIM doma 36.3 23 0.00078 24.5 2.6 38 210-259 15-52 (79)
166 2o35_A Hypothetical protein DU 36.2 11 0.00038 28.3 0.9 11 236-246 43-53 (105)
167 2d8y_A Eplin protein; LIM doma 36.0 33 0.0011 24.2 3.6 28 210-240 15-42 (91)
168 3fyb_A Protein of unknown func 35.8 11 0.00039 28.2 0.9 11 236-246 42-52 (104)
169 1x61_A Thyroid receptor intera 35.8 35 0.0012 22.7 3.5 10 212-221 7-16 (72)
170 2k1k_A Ephrin type-A receptor 35.7 20 0.00069 22.0 1.9 10 55-64 14-23 (38)
171 3pwf_A Rubrerythrin; non heme 35.7 20 0.00069 29.2 2.5 25 226-257 138-162 (170)
172 1x4i_A Inhibitor of growth pro 35.2 19 0.00066 24.9 2.0 47 209-258 5-56 (70)
173 1x4k_A Skeletal muscle LIM-pro 35.0 29 0.001 23.0 3.0 39 211-259 6-44 (72)
174 2d8x_A Protein pinch; LIM doma 34.9 28 0.00097 23.1 2.9 11 211-221 6-16 (70)
175 1lko_A Rubrerythrin all-iron(I 34.7 16 0.00053 30.3 1.7 25 227-257 156-180 (191)
176 1wd2_A Ariadne-1 protein homol 34.6 9.8 0.00034 25.7 0.4 38 210-247 6-47 (60)
177 2jvx_A NF-kappa-B essential mo 34.4 8.7 0.0003 22.2 0.1 12 249-260 4-15 (28)
178 1x64_A Alpha-actinin-2 associa 34.4 35 0.0012 23.9 3.4 40 209-260 24-63 (89)
179 2d8v_A Zinc finger FYVE domain 34.4 24 0.00082 24.5 2.3 33 207-244 5-38 (67)
180 2xjy_A Rhombotin-2; oncoprotei 34.3 25 0.00085 26.5 2.8 37 212-258 68-104 (131)
181 1x62_A C-terminal LIM domain p 34.0 29 0.001 23.8 2.9 39 209-259 14-52 (79)
182 2pv0_B DNA (cytosine-5)-methyl 33.5 24 0.00081 32.7 2.9 44 209-256 92-147 (386)
183 2dar_A PDZ and LIM domain prot 32.8 28 0.00096 24.5 2.7 39 209-259 24-62 (90)
184 1zfo_A LAsp-1; LIM domain, zin 32.8 22 0.00076 20.4 1.7 27 211-240 4-30 (31)
185 2cur_A Skeletal muscle LIM-pro 32.6 30 0.001 22.9 2.7 11 211-221 6-16 (69)
186 1x63_A Skeletal muscle LIM-pro 31.7 43 0.0015 22.8 3.5 40 210-259 15-54 (82)
187 1m3v_A FLIN4, fusion of the LI 31.5 29 0.00099 26.1 2.7 48 211-260 33-81 (122)
188 1nyp_A Pinch protein; LIM doma 31.5 26 0.00089 23.0 2.2 39 210-260 5-43 (66)
189 1wig_A KIAA1808 protein; LIM d 30.9 37 0.0013 23.0 3.0 10 212-221 7-16 (73)
190 2fiy_A Protein FDHE homolog; F 30.8 7.8 0.00027 34.9 -0.8 48 209-257 181-231 (309)
191 2kdx_A HYPA, hydrogenase/ureas 30.6 21 0.00071 27.1 1.7 25 227-257 74-99 (119)
192 1rut_X Flinc4, fusion protein 30.4 27 0.00092 28.3 2.5 38 212-259 71-108 (188)
193 1x4l_A Skeletal muscle LIM-pro 30.4 50 0.0017 21.9 3.5 39 210-259 5-46 (72)
194 4bbq_A Lysine-specific demethy 30.4 7.1 0.00024 29.4 -1.0 46 212-257 61-114 (117)
195 3f6q_B LIM and senescent cell 29.8 43 0.0015 22.0 3.1 42 209-260 10-51 (72)
196 2l4z_A DNA endonuclease RBBP8, 29.5 39 0.0013 25.6 3.1 39 210-259 61-99 (123)
197 1x6a_A LIMK-2, LIM domain kina 27.9 45 0.0015 22.7 3.0 36 211-258 16-51 (81)
198 1x68_A FHL5 protein; four-and- 27.2 37 0.0013 23.0 2.4 27 211-240 6-35 (76)
199 1yuz_A Nigerythrin; rubrythrin 27.1 32 0.0011 28.7 2.4 25 226-257 171-195 (202)
200 1v6g_A Actin binding LIM prote 25.9 41 0.0014 23.0 2.5 26 211-240 16-41 (81)
201 2cuq_A Four and A half LIM dom 25.7 53 0.0018 22.2 3.1 36 211-258 16-51 (80)
202 1tpx_A Prion protein, major pr 25.6 8.7 0.0003 29.8 -1.3 15 55-69 4-18 (121)
203 2lq6_A Bromodomain-containing 25.4 44 0.0015 24.1 2.6 34 210-244 17-51 (87)
204 2dlo_A Thyroid receptor-intera 24.8 45 0.0015 22.8 2.5 38 210-259 15-52 (81)
205 1x3h_A Leupaxin; paxillin fami 24.7 46 0.0016 22.6 2.6 37 211-259 16-52 (80)
206 2xqn_T Testin, TESS; metal-bin 23.8 70 0.0024 23.7 3.7 25 233-259 50-74 (126)
207 3vhs_A ATPase wrnip1; zinc fin 22.4 23 0.00079 20.0 0.4 10 250-259 8-17 (29)
208 2vrw_B P95VAV, VAV1, proto-onc 22.2 52 0.0018 29.7 3.1 35 209-243 356-391 (406)
209 2das_A Zinc finger MYM-type pr 21.8 70 0.0024 21.7 2.8 36 209-244 19-55 (62)
210 2kpi_A Uncharacterized protein 21.7 36 0.0012 22.5 1.4 29 208-236 8-38 (56)
211 2pk7_A Uncharacterized protein 21.5 24 0.00083 24.5 0.5 18 242-259 2-19 (69)
212 3lqh_A Histone-lysine N-methyl 21.5 34 0.0012 28.2 1.5 33 226-258 21-64 (183)
213 2jny_A Uncharacterized BCR; st 21.4 24 0.00082 24.4 0.4 18 242-259 4-21 (67)
214 2csz_A Synaptotagmin-like prot 20.6 39 0.0013 24.0 1.4 35 207-241 22-57 (76)
215 2egq_A FHL1 protein; LIM domai 20.3 75 0.0026 21.2 2.9 40 210-260 15-58 (77)
216 6rxn_A Rubredoxin; electron tr 20.3 48 0.0016 21.2 1.7 8 250-257 32-39 (46)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=126.21 Aligned_cols=80 Identities=35% Similarity=0.773 Sum_probs=69.3
Q ss_pred cccCCCCCCHHHHhcCCcccccchhhhhcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 179 DVTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 179 ~~~~~~gls~~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
.....++++++.++.+|...+..... ...++..|+||++++..++.++.+| |+|.||..||.+|+..+.+||+||+++
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHG-AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCS-SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCcCCCCCCHHHHHhCCCeeeccccc-ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 44567899999999999988765432 3456789999999999999999998 999999999999999999999999988
Q ss_pred cc
Q 024603 259 CK 260 (265)
Q Consensus 259 ~~ 260 (265)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-17 Score=119.47 Aligned_cols=71 Identities=34% Similarity=0.785 Sum_probs=59.3
Q ss_pred HHHhcCCcccccchhhhhcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 189 DMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 189 ~~i~~lp~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
+.++.+|...++..+ ...++..|+||++++..++.++.+| |+|.||..|+.+|++.+.+||+||+++...+
T Consensus 4 ~~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hhHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 445677777665432 2456789999999999999999998 9999999999999999999999999987654
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.57 E-value=1.1e-15 Score=104.36 Aligned_cols=52 Identities=50% Similarity=1.210 Sum_probs=47.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
+++.+|+||++++.+++....+|.|+|.||..|+.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567999999999998888888889999999999999999999999999864
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=108.93 Aligned_cols=55 Identities=36% Similarity=0.792 Sum_probs=49.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
...+..|+||++++..++.++.+| |+|.||..|+.+|++.+.+||+||+++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 455789999999999999998998 9999999999999999999999999987543
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=4e-15 Score=106.23 Aligned_cols=55 Identities=47% Similarity=1.021 Sum_probs=49.2
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
...+..|+||++.+..++.++.+| |+|.||..|+.+|+..+.+||+||+++....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 455689999999999888888898 9999999999999999999999999987543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=4.3e-15 Score=108.59 Aligned_cols=54 Identities=39% Similarity=1.046 Sum_probs=49.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...+..|+||++.+..++.++.+| |+|.||..||.+|++.+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 456789999999999998888898 999999999999999999999999998654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-14 Score=106.88 Aligned_cols=51 Identities=27% Similarity=0.692 Sum_probs=41.2
Q ss_pred Cccccccccccc-----------CCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 210 EIGCSICLEKFE-----------EGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~-----------~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
+..|+||++++. .++.++.+|.|+|.||.+||++|++.+.+||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 455666666664 455566777799999999999999999999999998754
No 8
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.6e-14 Score=102.29 Aligned_cols=54 Identities=35% Similarity=0.891 Sum_probs=47.2
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCCCCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDTDTW 265 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~~~~ 265 (265)
..++..|+||++.+.+ ..+| |+|.||..|+.+|+..+.+||+||+++...+..|
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3457899999999887 4566 9999999999999999999999999998877665
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=2.4e-14 Score=102.40 Aligned_cols=54 Identities=28% Similarity=0.724 Sum_probs=46.1
Q ss_pred cccCcccccccccccCC----CeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~----~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.+++..|+||++.+.++ .....+| |||.||..|+.+|++.+.+||+||+++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 34678999999999875 4445666 999999999999999999999999998754
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.43 E-value=7.7e-14 Score=109.01 Aligned_cols=52 Identities=29% Similarity=0.616 Sum_probs=42.4
Q ss_pred cCcccccccccccCCC---------------eeeecCCCCcccchhhHHHhh-----cCCCCccccccccccC
Q 024603 209 NEIGCSICLEKFEEGD---------------SARKLPSCGHCFHSECVDKWL-----TRNGSCPVCRECVCKD 261 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~---------------~~r~LP~CgH~FH~~CI~~WL-----~~~~sCPvCR~~v~~~ 261 (265)
.+..|+||+++|..+. .++.+| |+|.||..||.+|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999997654 333566 99999999999999 5677999999988644
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=6e-14 Score=95.48 Aligned_cols=50 Identities=36% Similarity=0.822 Sum_probs=43.3
Q ss_pred cCcccccccccccCC-CeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEG-DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~-~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
++..|+||++++.++ +....+| |+|.||..|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 567899999999764 3456676 9999999999999999999999999875
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-14 Score=99.59 Aligned_cols=53 Identities=28% Similarity=0.735 Sum_probs=44.9
Q ss_pred cccCcccccccccccCC----CeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~----~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..++..|+||++.+.++ ..+..+| |+|.||..|+.+|+..+.+||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34678999999999875 3345666 99999999999999999999999998864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=6.1e-14 Score=98.03 Aligned_cols=52 Identities=29% Similarity=0.747 Sum_probs=44.5
Q ss_pred cCcccccccccccCC----CeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 209 NEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 209 ~~~~C~ICle~~~~~----~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
++.+|+||++.+.++ .....+| |||.||..|+.+|++.+.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 467899999999875 3445666 999999999999999999999999998754
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.1e-13 Score=98.32 Aligned_cols=53 Identities=26% Similarity=0.550 Sum_probs=44.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
.+++..|+||++.+.++..+ +| |+|.||..||.+|+..+.+||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~--~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTI--TE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEEC--SS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCcCEE--CC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 45678999999999884332 35 9999999999999999999999999987654
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=4.2e-13 Score=104.69 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=42.4
Q ss_pred cCcccccccccccCCC---------------eeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGD---------------SARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~---------------~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
++..|+||++.|.++. .++.+| |+|.||..||++||..+.+||+||++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4678999999998651 245566 9999999999999999999999999853
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.34 E-value=3e-13 Score=96.04 Aligned_cols=49 Identities=35% Similarity=0.804 Sum_probs=42.4
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
.+..|+||++.+.++. ..+| |||.||..|+.+|+..+.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCE--EETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCc--EecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4678999999987643 4576 99999999999999999999999998753
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.4e-13 Score=99.03 Aligned_cols=54 Identities=31% Similarity=0.755 Sum_probs=45.5
Q ss_pred cccCcccccccccccCCCe-eeecCCCCcccchhhHHHhhcCC---CCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDS-ARKLPSCGHCFHSECVDKWLTRN---GSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~-~r~LP~CgH~FH~~CI~~WL~~~---~sCPvCR~~v~~~ 261 (265)
..+..+|+||++.+.+.+. ...+| |||.||..|+.+|+..+ .+||+||+++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4567899999999998654 56676 99999999999999875 7899999987543
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.8e-13 Score=96.68 Aligned_cols=50 Identities=28% Similarity=0.520 Sum_probs=43.0
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..++..|+||++.+.++ ..+| |+|.||..|+.+|+..+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34568999999999875 3456 99999999999999999999999998863
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=92.96 Aligned_cols=51 Identities=25% Similarity=0.673 Sum_probs=43.4
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.++..+ | |||.||..|+.+|+. .+..||+||+++..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~---~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQT---E-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESSCCCC---S-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcCeeEC---C-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 34578999999999987664 4 999999999999994 567899999998765
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=9.2e-13 Score=95.57 Aligned_cols=53 Identities=25% Similarity=0.697 Sum_probs=43.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~~~~ 262 (265)
..++..|+||++.+.++.. +|.|||.||..||.+|+..+ .+||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4567899999999998655 44599999999999999865 68999999865443
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=93.60 Aligned_cols=52 Identities=31% Similarity=0.731 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc---CCCCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~---~~~sCPvCR~~v~~~~ 262 (265)
..++..|+||++.+.++.. +| |||.||..|+.+|++ .+..||+||+++..++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVT---ID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEE---CT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEE---cC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4567899999999987443 45 999999999999997 4568999999987653
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=9.9e-13 Score=106.56 Aligned_cols=50 Identities=40% Similarity=0.947 Sum_probs=43.2
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
+++..|+||++.+.++. .+| |||.||..||.+|+..+.+||+||+++...
T Consensus 51 ~~~~~C~iC~~~~~~~~---~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAV---TLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEE---EET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCce---ECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 44678999999998854 456 999999999999999999999999998643
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=96.10 Aligned_cols=54 Identities=22% Similarity=0.600 Sum_probs=44.6
Q ss_pred cccCcccccccccccCCCeeeecCCCC-----cccchhhHHHhhcCC--CCccccccccccCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCG-----HCFHSECVDKWLTRN--GSCPVCRECVCKDT 262 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~Cg-----H~FH~~CI~~WL~~~--~sCPvCR~~v~~~~ 262 (265)
..++..|.||++++.+++.+ .+| |+ |.||..||++|+..+ .+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34567899999999877766 588 86 999999999999865 48999999886443
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.4e-12 Score=95.98 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=42.7
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.+....|+||++.+.++. .+| |||.||..|+.+|+....+||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345689999999998854 456 9999999999999999999999999975
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.24 E-value=3.2e-12 Score=93.12 Aligned_cols=51 Identities=22% Similarity=0.538 Sum_probs=43.7
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-CCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.++..+ | |||.||..||.+|+.. +.+||+||+++...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~---~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIV---S-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEE---T-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccCCEEc---C-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 35678999999999986554 5 9999999999999987 78899999988643
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=3.9e-12 Score=89.71 Aligned_cols=52 Identities=31% Similarity=0.698 Sum_probs=41.9
Q ss_pred cCcccccccc-cccCCCeee-ecCCCCcccchhhHHHhhcC-CCCccccccccccC
Q 024603 209 NEIGCSICLE-KFEEGDSAR-KLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 261 (265)
Q Consensus 209 ~~~~C~ICle-~~~~~~~~r-~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 261 (265)
++..|+||++ .+.++.... .+| |||.||..|+.+|+.+ +.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3578999999 788876543 355 9999999999999764 46799999998654
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.5e-12 Score=101.87 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=45.3
Q ss_pred ccCcccccccccccCC----CeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~----~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.++.+|+||++.+.++ .....+| |||.||..||.+|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4578999999999875 3445666 999999999999999999999999988644
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=98.22 Aligned_cols=51 Identities=31% Similarity=0.727 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..++..|+||++.+.++..+ +| |||.||..|+.+|+..+.+||+||.++..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~--~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMII--PQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEEC--TT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEE--CC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 44568999999999884332 35 99999999999999999999999998864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=1.3e-12 Score=100.37 Aligned_cols=53 Identities=26% Similarity=0.664 Sum_probs=43.8
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-CCccccccccccC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 261 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~~ 261 (265)
...++..|+||++.+.++.. .+| |||.||..||.+|+..+ ..||+||.++...
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~--~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARL--CPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEE--CTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCCCCCCccCCccccCccc--cCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45567899999999987443 155 99999999999999987 6999999998643
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.23 E-value=9.7e-13 Score=104.39 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=1.1
Q ss_pred cCcccccccccccCCCe--------------eeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDS--------------ARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~--------------~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
+++.|+||+++|.++.. ...++.|+|.||..||++||+.+.+||+||++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45799999999976321 2222349999999999999999999999999853
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=93.87 Aligned_cols=50 Identities=36% Similarity=0.725 Sum_probs=42.8
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-------CCCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-------NGSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-------~~sCPvCR~~v~~ 260 (265)
..++..|+||++.+.++.. +| |||.||..|+.+|+.. ...||+||+++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567899999999988655 45 9999999999999986 5689999998864
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=5.9e-12 Score=92.39 Aligned_cols=51 Identities=33% Similarity=0.718 Sum_probs=43.2
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC------CCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~------~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.++. .+| |+|.||..|+.+|+.. ...||+||+++..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 445789999999998865 456 9999999999999987 67899999988643
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=7.4e-12 Score=97.01 Aligned_cols=53 Identities=26% Similarity=0.672 Sum_probs=44.6
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...++..|+||++.+.++.. .+| |||.||..|+.+|+..+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATT--IIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEE--ETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred ccCCcCCCccCChHHhCcCE--eCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34567899999999987432 236 999999999999999999999999998754
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=7.5e-12 Score=91.84 Aligned_cols=51 Identities=37% Similarity=0.808 Sum_probs=43.3
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC------CCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR------NGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~------~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.++.. +| |||.||..|+.+|+.. ...||+||+.+...
T Consensus 16 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567899999999988654 45 9999999999999987 77899999988743
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.16 E-value=9.4e-12 Score=93.44 Aligned_cols=50 Identities=26% Similarity=0.719 Sum_probs=41.8
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 259 (265)
..++..|+||++.+.++..+ |.|||.||..||.+|+..+ ..||+||+++.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~---~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVI---PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCEEC---TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCceEC---CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678999999999986544 4499999999999999743 58999999873
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.16 E-value=2e-11 Score=89.98 Aligned_cols=58 Identities=28% Similarity=0.604 Sum_probs=43.7
Q ss_pred cccCcccccccccccCCC-eeeecCCCCcccchhhHHHhhc-CCCCccccccccccCCCCC
Q 024603 207 LDNEIGCSICLEKFEEGD-SARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKDTDTW 265 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~-~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~~~~~ 265 (265)
.+++.+|+||++.+...+ ....+| |||.||..|+.+++. ....||+||+++...+..|
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 456789999999886432 222244 999999999999875 4568999999997665443
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.15 E-value=1e-11 Score=98.56 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=42.4
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC-Ccccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~ 260 (265)
..++..|+||++.+.++.. +| |||.||..|+.+|+..+. .||+||+++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPIT---TV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEE---ee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3456899999999998644 45 999999999999998554 89999999865
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.7e-11 Score=85.69 Aligned_cols=44 Identities=32% Similarity=0.788 Sum_probs=37.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc---CCCCcccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVC 254 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~---~~~sCPvC 254 (265)
.+++..|+||++.+.++.. +| |||.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVT---ID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEE---CT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEE---eC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999999998544 45 999999999999998 45689998
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=1.9e-11 Score=101.64 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=41.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-CCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~ 260 (265)
.++..|+||++.+.++.. .+| |||.||..|+.+|+.. +..||+||.++..
T Consensus 52 ~~~~~C~IC~~~~~~p~~--~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMT--TKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEE--ETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCE--eCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 346799999999987432 245 9999999999999997 7789999998853
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=87.78 Aligned_cols=51 Identities=29% Similarity=0.654 Sum_probs=42.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccccccccccCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVCKDT 262 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~~~~ 262 (265)
...+|+||++.+..++.. +.|+|.||..||.+||+.+ .+||+||++.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 458999999999875543 3699999999999999987 78999999876443
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=82.95 Aligned_cols=44 Identities=43% Similarity=1.040 Sum_probs=36.9
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhh---cCCCCcccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVC 254 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL---~~~~sCPvC 254 (265)
..++..|+||++.+.++.. +| |+|.||..|+.+|+ ..+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999998754 45 99999999999995 456789998
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=1.5e-11 Score=97.44 Aligned_cols=53 Identities=28% Similarity=0.752 Sum_probs=44.8
Q ss_pred ccCcccccccccccCC----CeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEG----DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~----~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
++...|+||++.+.++ .....++ |||.||..|+++|++.+.+||+||.++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4578899999999864 2334555 999999999999999999999999998765
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.4e-11 Score=94.09 Aligned_cols=50 Identities=34% Similarity=0.731 Sum_probs=42.1
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC---CccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG---SCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~---sCPvCR~~v~~~ 261 (265)
.+...|+||++.+.++.. +| |||.||..|+.+|+..+. +||+||.++...
T Consensus 19 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 456799999999988655 45 999999999999998654 899999988653
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=1.8e-11 Score=95.88 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-CCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.++.. +| |||.||..|+.+|+.. +.+||+||.++...
T Consensus 20 ~~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred ccCCCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4456899999999988654 45 9999999999999986 67899999998653
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=2.2e-11 Score=100.26 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=43.4
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC-CccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.++.. +| |||.||..||.+|+.... .||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4456899999999988655 55 999999999999998765 899999998765
No 46
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.05 E-value=2.8e-11 Score=85.64 Aligned_cols=52 Identities=29% Similarity=0.469 Sum_probs=42.1
Q ss_pred ccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
+++.+|+||++...+.. +..+| |||. ||.+|+.+|.+.+..||+||+++...
T Consensus 6 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp GGGSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCcCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 35678999999876632 21348 9999 89999999999889999999998653
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=7e-11 Score=91.01 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=45.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
..++..||||++.+.+|..+ .|||+||..||.+|+..+.+||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 35678999999999997776 4999999999999999899999999988653
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=2.6e-11 Score=94.84 Aligned_cols=48 Identities=31% Similarity=0.709 Sum_probs=41.1
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-CCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-NGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~sCPvCR~~v~ 259 (265)
.++..|+||++.+.++..+ | |||.||..|+.+|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~---~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTL---P-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEEC---T-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEc---C-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3468999999999886544 5 9999999999999976 668999999875
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=4.4e-11 Score=94.20 Aligned_cols=51 Identities=35% Similarity=0.788 Sum_probs=43.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC-CccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~~~ 261 (265)
.+++..|+||++.+.++. .+| |||.||..|+.+|+..+. +||+||.++...
T Consensus 15 ~~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCeE---ECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 456789999999998863 355 999999999999998765 999999988653
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.00 E-value=1e-10 Score=87.33 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=44.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.+|..+ | |||+||..||.+|+..+.+||+||+++...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~---~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRL---P-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEEC---T-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CchheECcccCchhcCCeEC---C-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 44678999999999997665 4 999999999999999889999999988643
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=1.9e-10 Score=88.29 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=44.8
Q ss_pred cccCcccccccccccCCCeeeecCCCC-cccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~Cg-H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.+|..+ .|| |+||..||.+|+..+.+||+||+++...
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 34678999999999997765 499 9999999999999989999999988643
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.1e-10 Score=80.22 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=39.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccCC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKDT 262 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~~ 262 (265)
.++..|+||++.+.++. .+| |||.||..|+.+| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeE---EcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 45788999999999864 455 9999999999884 678999999986543
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=7.8e-11 Score=83.08 Aligned_cols=52 Identities=21% Similarity=0.455 Sum_probs=41.9
Q ss_pred ccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
+.+..|+||++...+.. +..+| |||. ||..|+.+|.+.+..||+||+++...
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 34678999999876632 22347 9998 99999999998889999999998653
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=1.7e-10 Score=90.66 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=41.5
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
...++..|+||++.+.++..+ .| |||.||..||.+|+. ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~--~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCL--GG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCC--CS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hchhCCCCCCCChHhhCccEe--CC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 345678999999999885433 25 999999999999987 889999999853
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.95 E-value=1.8e-10 Score=93.90 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=42.1
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC-Cccccccccc
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG-SCPVCRECVC 259 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~-sCPvCR~~v~ 259 (265)
..+++..|+||++.+.++.. ++ |||.||..||.+|+.... +||+||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~---~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQ---AQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEE---CC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567899999999998744 45 999999999999998665 8999999763
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=1.1e-10 Score=84.78 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=40.8
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccCCC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 263 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 263 (265)
..+++..|+||++.+.++ ..+| |||. ||..|+.+| ..||+||+++.....
T Consensus 20 ~~~~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHHHHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEEEE
T ss_pred cCccCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccCcEE
Confidence 345567999999998774 4456 9999 999999998 889999999876543
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=7.4e-10 Score=80.39 Aligned_cols=51 Identities=25% Similarity=0.638 Sum_probs=40.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccCCCCC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTDTW 265 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~~~ 265 (265)
.+++..|+||++.+.++. .+| |||. ||..|+.+ ...||+||+++......|
T Consensus 22 ~~~~~~C~IC~~~~~~~~---~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIV---FVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHHSCSSSCSSCCCBC---CSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCCcCCCCCCCEE---Eec-CCCHHHHHHHhhC----CCCCccCCceecCcEEEe
Confidence 345678999999987744 456 9999 99999965 378999999998765544
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.85 E-value=9.4e-10 Score=103.28 Aligned_cols=49 Identities=29% Similarity=0.690 Sum_probs=41.7
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCccccccccccC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCKD 261 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~~ 261 (265)
....|+||++.+.++ ..+| |||.||..|+.+|+. .+.+||+||+++...
T Consensus 331 ~~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 347999999998774 4456 999999999999998 788999999988653
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.77 E-value=1.3e-09 Score=90.75 Aligned_cols=51 Identities=33% Similarity=0.727 Sum_probs=42.9
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-CCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~~ 261 (265)
.+++..|+||++.+.++.. +| |||.||..|+.+|+... .+||+||.++...
T Consensus 15 ~~~~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQ---TP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCcEE---CC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4567899999999998643 55 99999999999999865 4999999988653
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.77 E-value=9.7e-10 Score=80.92 Aligned_cols=47 Identities=34% Similarity=0.706 Sum_probs=38.2
Q ss_pred cccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
..++..|+||++.+.+ ...+| |||. ||..|+.+| ..||+||+++...
T Consensus 15 l~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3456789999998776 45567 9999 999999887 4999999988643
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.77 E-value=2.6e-09 Score=98.40 Aligned_cols=55 Identities=24% Similarity=0.665 Sum_probs=42.2
Q ss_pred cccCcccccccccccCCC----eeeecCCCCcccchhhHHHhhcCC-----------CCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGD----SARKLPSCGHCFHSECVDKWLTRN-----------GSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~----~~r~LP~CgH~FH~~CI~~WL~~~-----------~sCPvCR~~v~~~ 261 (265)
.+...+|+||++.+.+.. ..-..++|+|.||..|+.+|++.. ++||+||+++...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 345689999999998722 222234799999999999999742 4699999998654
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=1.8e-09 Score=95.44 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=42.0
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-CCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~ 260 (265)
.+...|+||++.+.+|..+ | |||+||..||.+|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~---~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCIT---P-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEEC---S-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeEC---C-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4578999999999997665 4 99999999999999864 459999998864
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.8e-09 Score=76.24 Aligned_cols=48 Identities=29% Similarity=0.643 Sum_probs=38.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccCCC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 263 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 263 (265)
.++..|.||++...+ +..+| |+|. ||..|+.. ...||+||+++....+
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 456789999998665 55677 9999 99999984 4789999999876443
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.2e-09 Score=81.38 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=39.6
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC------CCccc--cccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN------GSCPV--CREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~------~sCPv--CR~~ 257 (265)
..+..||||++.|.+|..+ |.|||+||..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~---~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN---KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE---SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEc---CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4578999999999997665 3499999999999999854 48999 9865
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=4.8e-09 Score=79.18 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=40.6
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC--------CCCccc--cccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR--------NGSCPV--CREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~--------~~sCPv--CR~~ 257 (265)
+..+|+||++++..++.+...| |+|.||.+|+.+++.. ..+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999999887776666 9999999999999863 236999 9988
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.59 E-value=1.3e-08 Score=86.24 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=42.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-CCcccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-GSCPVCRECVCK 260 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-~sCPvCR~~v~~ 260 (265)
..+...||||++.+.+|..+ | |||+||..||.+|+..+ .+||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~---~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCIT---P-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEEC---T-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeEC---C-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34578999999999997666 4 99999999999999864 469999998864
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.56 E-value=2.5e-08 Score=69.70 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=37.7
Q ss_pred cccCcccccccccccCCCeeeecC-CCCc---ccchhhHHHhhcC--CCCccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLP-SCGH---CFHSECVDKWLTR--NGSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP-~CgH---~FH~~CI~~WL~~--~~sCPvCR~~v~ 259 (265)
.++...|.||+++..+ .+ .+| .|.| .||..|+.+|+.. +.+||+||.++.
T Consensus 3 ~~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456789999998433 23 477 3445 9999999999974 578999998764
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.46 E-value=2.8e-08 Score=92.16 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=41.1
Q ss_pred hcccCcccccccccccCCCeeeecCCCCcc-cchhhHHHhhcCCCCccccccccccCCC
Q 024603 206 QLDNEIGCSICLEKFEEGDSARKLPSCGHC-FHSECVDKWLTRNGSCPVCRECVCKDTD 263 (265)
Q Consensus 206 ~~~~~~~C~ICle~~~~~~~~r~LP~CgH~-FH~~CI~~WL~~~~sCPvCR~~v~~~~~ 263 (265)
..+++..|+||++.+.++ ..+| |||. ||..|+.+| ..||+||.++...-.
T Consensus 291 ~l~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKGTVR 341 (345)
T ss_dssp HHHTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCEEEE
T ss_pred hCcCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccCeEE
Confidence 345678999999998874 4456 9999 999999998 789999999875433
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.5e-08 Score=87.28 Aligned_cols=50 Identities=24% Similarity=0.576 Sum_probs=41.6
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC--CCccc--ccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPV--CRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPv--CR~~v~~ 260 (265)
..+..||||++.|.+|... . .|||.||..||.+|+..+ .+||+ ||+.+..
T Consensus 179 ~~el~CPIcl~~f~DPVts--~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLIS--R-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEE--S-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeee--C-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4567999999999997753 3 599999999999999864 46999 9997753
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=9.5e-08 Score=66.89 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=41.2
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
...|+||++.+.++. .+|.|||+|...||.+|++.+.+||++++++...
T Consensus 3 ~~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 367999999999863 3434999999999999999888999999988644
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.16 E-value=1.1e-06 Score=67.21 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=36.8
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhc-CCCCcccccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-RNGSCPVCRECVCK 260 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-~~~sCPvCR~~v~~ 260 (265)
.|++|--.+. ...|..| |+|.||.+|+..|.+ +.++||.||.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777754443 4677888 999999999999985 56889999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.94 E-value=7.6e-06 Score=72.07 Aligned_cols=50 Identities=28% Similarity=0.662 Sum_probs=41.4
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC--CccccccccccC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG--SCPVCRECVCKD 261 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~--sCPvCR~~v~~~ 261 (265)
....|.||.+....+ ..+|.|+|.||..|+.+|++.+. .||.|+.+.+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 357899999998875 44567999999999999998654 899999987644
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.32 E-value=0.0095 Score=44.55 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=27.1
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHH-hh
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDK-WL 245 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~-WL 245 (265)
++..|+||.+++..+....-++ |+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 4578999998765444443465 999999999998 53
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.21 E-value=0.0079 Score=45.21 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=39.2
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
......|..|....+. .+ . ...|+.|..|+...|.....||+|..+++..
T Consensus 25 ~~G~~nCKsCWf~~k~--LV-~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG--LV-E--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS--EE-E--CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC--ee-e--ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3456789999876553 33 1 2479999999999999999999999988643
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.54 E-value=0.03 Score=39.30 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=35.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Cccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 259 (265)
.....|.||.+. ..+.....|...||..|++..+.... .||.|+....
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999753 33555667999999999988876543 5999987543
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.25 E-value=0.022 Score=39.31 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=37.4
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----CCCCcccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECV 258 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v 258 (265)
++...|++|...+.+.........|...||..|+.--.. ..-.||.|+..-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 456789999998876565666667999999999853221 345699998653
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.40 E-value=0.091 Score=36.06 Aligned_cols=47 Identities=23% Similarity=0.565 Sum_probs=33.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC----CCccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCREC 257 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~----~sCPvCR~~ 257 (265)
...+..|.+|.+. ..+.....|...||..|+..-+... =.||.|+..
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 3455566799999999998755432 259999763
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.14 E-value=0.11 Score=37.98 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=30.7
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR 247 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~ 247 (265)
...+.|.+|.+.+++...+.--..=+|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4568999999999998877211122799999999988874
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.68 E-value=0.074 Score=37.77 Aligned_cols=53 Identities=23% Similarity=0.425 Sum_probs=37.5
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcC----CCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR----NGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~----~~sCPvCR~~v~~~ 261 (265)
.+...|.||..... ++.......|...||..|+..-... .-.||.|+..+.+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 34567999987753 4555566679999999999754432 33599999877543
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.15 E-value=0.053 Score=37.01 Aligned_cols=51 Identities=27% Similarity=0.625 Sum_probs=36.2
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----CccccccccccCCC
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVCKDTD 263 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~~~~~ 263 (265)
.+..|.+|.+. + .+.....|...||..|+..=+...+ .||.|+....+.++
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~ 58 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEE 58 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTT
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhc
Confidence 46789999864 3 3445667999999999986544322 49999887665543
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.30 E-value=0.18 Score=37.05 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=24.1
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHh
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W 244 (265)
..+..|.||- .+...+... ...|+..||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 4678999994 344433331 2248999999999985
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.28 E-value=0.085 Score=36.20 Aligned_cols=49 Identities=20% Similarity=0.418 Sum_probs=33.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Cccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 259 (265)
...+..|.+|.+. + .+.....|...||..|+..-+.... .||.|+....
T Consensus 6 d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456789999752 3 3444556889999999986544322 4999987543
No 83
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.07 E-value=0.079 Score=40.45 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=34.8
Q ss_pred CcccccccccccCCCeeeecC-CCCcccchhhHHHh------h----cCCCCcccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKW------L----TRNGSCPVCRECV 258 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP-~CgH~FH~~CI~~W------L----~~~~sCPvCR~~v 258 (265)
...|+||...+.+........ .|...||..|+.-= + ..+-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999987665555664 79999999997311 1 0234699998754
No 84
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=89.13 E-value=0.33 Score=32.00 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=32.4
Q ss_pred cccccccccccCCCeeeecC-CCCcccchhhHHHh----hcCCCCccccc
Q 024603 211 IGCSICLEKFEEGDSARKLP-SCGHCFHSECVDKW----LTRNGSCPVCR 255 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP-~CgH~FH~~CI~~W----L~~~~sCPvCR 255 (265)
-.|.+|...+.++....... .|...||..|+.-- ...+-.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35789999887666666666 69999999997421 12556799986
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.64 E-value=0.098 Score=35.15 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=32.5
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Ccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 256 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~ 256 (265)
...+..|.+|.+. + .+.....|...||..|+..=+.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999874 3 3445567999999999986554332 4999864
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.11 E-value=0.35 Score=35.84 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=34.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Cccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 257 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~ 257 (265)
...+..|.+|.+. + .+.....|.-.||..|++.=+...+ .||.|+..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4456789999864 3 3555667899999999977655432 49999864
No 87
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.06 E-value=0.16 Score=35.92 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=35.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHh----hcCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW----LTRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W----L~~~~sCPvCR~~v~~ 260 (265)
....| ||.....+++.......|...||..|+.-- ...+-.||.|+..-.+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 34678 798877666656666679999999998532 1234569999875443
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.88 E-value=0.27 Score=34.87 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=35.9
Q ss_pred cccCcccccccccc-cCCCeeeecCCCCcccchhhHHHhhcCC--CCccccccc
Q 024603 207 LDNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCREC 257 (265)
Q Consensus 207 ~~~~~~C~ICle~~-~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~ 257 (265)
..++..|.||.+.- .+++.+.....|.-.||..|+..-.... =.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44678899998763 3455666777899999999997432222 249999764
No 89
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.84 E-value=0.26 Score=36.37 Aligned_cols=53 Identities=21% Similarity=0.421 Sum_probs=36.9
Q ss_pred cccCcccccccccc-cCCCeeeecCCCCcccchhhHHHhhcCC--CCccccccccc
Q 024603 207 LDNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTRN--GSCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~-~~~~~~r~LP~CgH~FH~~CI~~WL~~~--~sCPvCR~~v~ 259 (265)
.+++..|.||.+.- .+++.+.....|.-.||..|+..-+... =.||.|+....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 34568899998753 3445666777899999999997533222 24999987543
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.43 E-value=0.48 Score=32.91 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=27.4
Q ss_pred cccCcccccccccccCCCeeeecC-CCCcccchhhH
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLP-SCGHCFHSECV 241 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP-~CgH~FH~~CI 241 (265)
.+....|++|...+.+.+..+... .|.-.||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345678999999998877777777 79999999997
No 91
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.28 E-value=0.44 Score=31.05 Aligned_cols=44 Identities=30% Similarity=0.644 Sum_probs=30.3
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Ccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 256 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~ 256 (265)
.|.||.+.-.. ..+.....|...||..|++.=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765433 34555667999999999975444322 4999975
No 92
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.19 E-value=0.48 Score=33.92 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=33.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHh---h--cCCCCcccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW---L--TRNGSCPVCRECV 258 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W---L--~~~~sCPvCR~~v 258 (265)
....| ||...+.+.........|...||..|+.-- . ...-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34566 998887655555566679999999998421 1 1345699999754
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.07 E-value=0.25 Score=34.25 Aligned_cols=47 Identities=26% Similarity=0.572 Sum_probs=33.3
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Ccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECV 258 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~v 258 (265)
..+..|.||.+. + .+.....|...||..|+..=+.... .||.|+..-
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 457789999863 3 3555667999999999986544322 499998643
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.97 E-value=0.33 Score=37.20 Aligned_cols=45 Identities=38% Similarity=0.688 Sum_probs=32.2
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Ccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRE 256 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~ 256 (265)
.|.||.+.-.++..+.....|...||..|++.-|.... .||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 68888765444445656667999999999976555332 5999985
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.52 E-value=0.45 Score=38.86 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=34.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhh-----cCCCCccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL-----TRNGSCPVCREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL-----~~~~sCPvCR~~ 257 (265)
++...| +|.....+.........|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456778 9998876555566677899999999984211 234569999864
No 96
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.19 E-value=0.41 Score=33.96 Aligned_cols=49 Identities=22% Similarity=0.431 Sum_probs=33.3
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHh---------hcCCCCcccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW---------LTRNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W---------L~~~~sCPvCR~~v~~ 260 (265)
...| ||....... .......|...||..|+.-- ...+-.||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 4567 898877643 44455579999999998421 1245679999876543
No 97
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=84.06 E-value=0.35 Score=33.23 Aligned_cols=51 Identities=20% Similarity=0.467 Sum_probs=36.2
Q ss_pred ccCccccccccccc-CCCeeeecCCCCcccchhhHHHhhc-------CCCCcccccccc
Q 024603 208 DNEIGCSICLEKFE-EGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECV 258 (265)
Q Consensus 208 ~~~~~C~ICle~~~-~~~~~r~LP~CgH~FH~~CI~~WL~-------~~~sCPvCR~~v 258 (265)
.++..|.||..... ++..+.....|...||..|+..=+. ..=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45688999987643 3455666778999999999875432 223599997654
No 98
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=83.81 E-value=0.39 Score=33.67 Aligned_cols=47 Identities=21% Similarity=0.556 Sum_probs=32.3
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhh---cCCCCcccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVCRE 256 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL---~~~~sCPvCR~ 256 (265)
.+...| ||..... ++.......|...||..|+.--- ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445678 9987765 44455566799999999985322 23346999975
No 99
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.75 E-value=0.9 Score=31.06 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=31.6
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVC 254 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvC 254 (265)
...|--|...+.+.. ....|+|++.||.+|=.---+.=..||-|
T Consensus 15 ~~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 15 ERFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CCEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CCcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 356999999886432 35688999999999943332333579988
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.73 E-value=0.64 Score=34.56 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=30.3
Q ss_pred ccCcccccccccccCCCeeeecCC--CC-cccchhhHHHhhcC----CCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTR----NGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~--Cg-H~FH~~CI~~WL~~----~~sCPvCR~~v~~ 260 (265)
.+...| ||.+... ++ ...... |. ..||..|+. |.. +-.||.|+..-.+
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 345667 9988653 33 333444 55 689999996 332 2359999876543
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.30 E-value=0.57 Score=48.44 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=42.6
Q ss_pred ccCcccccccccccCCCeeeecCCCC-cccchhhHHHhhcCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCG-HCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~Cg-H~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
.++..|||-++-+.+|..+ | -| |+|-..+|.+|+..+.+||+=|+++...
T Consensus 889 P~~F~cPIs~~lM~DPVil---p-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVIL---P-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSEEEC---T-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCCeEc---C-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4467899999999997666 4 76 6999999999999999999999988643
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=83.24 E-value=0.76 Score=32.43 Aligned_cols=47 Identities=28% Similarity=0.576 Sum_probs=30.1
Q ss_pred ccCcccccccccccCCCeeeecCC--CC-cccchhhHHHhhcCC----CCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~--Cg-H~FH~~CI~~WL~~~----~sCPvCR~~v~ 259 (265)
.+...| ||.+... +. ...... |. ..||..|+. |... -.||.|+..-.
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 345677 8987543 44 334445 65 699999997 3332 35999987543
No 103
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=81.33 E-value=0.69 Score=31.40 Aligned_cols=43 Identities=33% Similarity=0.665 Sum_probs=28.3
Q ss_pred cCcccccccccccCCCeeeecCC--CC-cccchhhHHHhhcCC----CCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~--Cg-H~FH~~CI~~WL~~~----~sCPvCR~ 256 (265)
+...| ||.+.. .++ ...... |. ..||..|+. +... -.||.|++
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45567 998764 343 444555 66 699999997 3322 35999975
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.06 E-value=0.3 Score=36.23 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=34.4
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Cccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~ 257 (265)
.++..|.||.+.-. +..+.....|...||..|+..=+...+ .||.|+..
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45568999987643 344556667999999999975443322 49999864
No 105
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=80.68 E-value=0.72 Score=31.37 Aligned_cols=43 Identities=30% Similarity=0.658 Sum_probs=27.7
Q ss_pred cCcccccccccccCCCeeeecCC--CC-cccchhhHHHhhcCC----CCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTRN----GSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~--Cg-H~FH~~CI~~WL~~~----~sCPvCR~ 256 (265)
+...| ||.+... +. .....+ |. ..||..|+. |... -.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44566 8987643 33 444445 55 689999997 4332 35999975
No 106
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.45 E-value=0.36 Score=35.50 Aligned_cols=53 Identities=17% Similarity=0.458 Sum_probs=37.4
Q ss_pred ccCcccccccccccC-CCeeeecCCCCcccchhhHHHhhc--------CCCCcccccccccc
Q 024603 208 DNEIGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVCK 260 (265)
Q Consensus 208 ~~~~~C~ICle~~~~-~~~~r~LP~CgH~FH~~CI~~WL~--------~~~sCPvCR~~v~~ 260 (265)
+.+..|.+|...-.. ...+.....|...||..|+..=+. ..=.||.|+.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 356789999876432 345666778999999999976543 12259999876543
No 107
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.02 E-value=0.8 Score=32.73 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=34.1
Q ss_pred ccCcccccccccccCCCeeeecC--CCCcccchhhHHHhh---------cCCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWL---------TRNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP--~CgH~FH~~CI~~WL---------~~~~sCPvCR~~v~~~ 261 (265)
.....| ||-.....+ ..+... .|...||..|+.--- ..+-.||.|+..-.+.
T Consensus 14 ~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 14 EIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 345678 898875444 344444 699999999985211 1345699998765443
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.66 E-value=0.32 Score=35.38 Aligned_cols=54 Identities=15% Similarity=0.369 Sum_probs=37.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc--------CCCCccccccccccC
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVCKD 261 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~--------~~~sCPvCR~~v~~~ 261 (265)
.+...|.+|...|..-..-.....||++||..|...... ....|-.|-..+...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS 80 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence 345789999999987555555667999999999876532 223577776655443
No 109
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=79.36 E-value=0.26 Score=34.38 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=29.0
Q ss_pred cCcccccccccccCCCeeeecC--CCCcccchhhHHHh---hc-----CCCCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKW---LT-----RNGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP--~CgH~FH~~CI~~W---L~-----~~~sCPvCR~ 256 (265)
+...| ||-.....+..+ ... .|...||..|+.-- .. .+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34567 897766655544 332 48889999997311 01 1346999985
No 110
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=77.29 E-value=0.5 Score=36.96 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=33.3
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
....|..|...|..-..-.....||.+||..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3468999999987654445566899999999987765556667777543
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=76.87 E-value=1.1 Score=30.67 Aligned_cols=44 Identities=32% Similarity=0.615 Sum_probs=28.3
Q ss_pred cCcccccccccccCCCeeeecCC--CC-cccchhhHHHhhcC----CCCccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPS--CG-HCFHSECVDKWLTR----NGSCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~--Cg-H~FH~~CI~~WL~~----~~sCPvCR~~ 257 (265)
+...| ||.+.. .++ ...... |. ..||..|+. |.. +-.||.|+..
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 45567 998763 343 444555 55 899999996 222 2359999763
No 112
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.39 E-value=1.2 Score=33.27 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=30.7
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhc---CCCCcccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT---RNGSCPVCRE 256 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~---~~~sCPvCR~ 256 (265)
...| ||-.....+. ......|...||..|+..=.. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~-mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGY-MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSC-EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCc-EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 8977665544 445667999999999864322 2235999974
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=76.11 E-value=1.8 Score=31.71 Aligned_cols=51 Identities=24% Similarity=0.526 Sum_probs=36.1
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc------CCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~------~~~sCPvCR~~v~ 259 (265)
+...|.+|...|..-..-.....||++||..|...... ....|-.|-..+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 45689999999986555555668999999999876542 1234777765543
No 114
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.49 E-value=1.8 Score=33.73 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=28.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhh
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL 245 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL 245 (265)
+...|.+|...|..-..-.....||++||..|.....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 4568999999998655555566899999999976553
No 115
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=74.69 E-value=1.3 Score=33.40 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=27.2
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT 246 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~ 246 (265)
.++..|.||.+.=+. +.+.....|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 457789999776332 22344557999999999987654
No 116
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.24 E-value=3.8 Score=31.03 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=25.3
Q ss_pred cCcccccccccc-----cCCCeeeecCCCCcccchhhHH
Q 024603 209 NEIGCSICLEKF-----EEGDSARKLPSCGHCFHSECVD 242 (265)
Q Consensus 209 ~~~~C~ICle~~-----~~~~~~r~LP~CgH~FH~~CI~ 242 (265)
....|.+|+..= ..++.+.....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998763 2344566666899999999995
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=74.03 E-value=1 Score=35.80 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=34.7
Q ss_pred ccCcccccccccc-cCCCeeeecCCCCcccchhhHHHhhcC-CC---Cccccccc
Q 024603 208 DNEIGCSICLEKF-EEGDSARKLPSCGHCFHSECVDKWLTR-NG---SCPVCREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~-~~~~~~r~LP~CgH~FH~~CI~~WL~~-~~---sCPvCR~~ 257 (265)
..+..|.+|...| .....-+....|.|.+|..|-..-... +. .|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 3567899999999 444555677789999999996532111 11 28888753
No 118
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=73.97 E-value=1.9 Score=30.96 Aligned_cols=52 Identities=23% Similarity=0.545 Sum_probs=35.9
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc------CCCCccccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT------RNGSCPVCRECVC 259 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~------~~~sCPvCR~~v~ 259 (265)
.+...|.+|...|..-..-.....||++||..|....+. ....|-.|-..+.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 345689999999986555555668999999999876432 1124777765553
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=73.51 E-value=1.5 Score=30.71 Aligned_cols=45 Identities=29% Similarity=0.624 Sum_probs=29.7
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcC-----CCCccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-----NGSCPVCREC 257 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-----~~sCPvCR~~ 257 (265)
.|.||...- ++..+.....|...||..|++.=|.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566776542 23445556679999999999854432 2259999753
No 120
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.16 E-value=3.5 Score=33.03 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=32.6
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----------CCCCcccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----------RNGSCPVCRE 256 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----------~~~sCPvCR~ 256 (265)
...+..|.+|-+. ++ +.....|...||..|++.-+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456889999763 33 445557899999999996653 1235999984
No 121
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.52 E-value=1.5 Score=37.85 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=28.1
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-----CCccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 257 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-----~sCPvCR~~ 257 (265)
+..|.+|...- ++..+.....|...||..|++.=|... =.||.|+.+
T Consensus 174 ~c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34688887642 234455666799999999998544421 249999754
No 122
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.30 E-value=2.6 Score=29.59 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=26.6
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHh
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W 244 (265)
..|.+|...|..-..-.....||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999998765544555679999999997644
No 123
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.81 E-value=2.1 Score=30.81 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=27.9
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHh
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W 244 (265)
.+...|.+|...|..-..-.....||++||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3456899999998765444445579999999997654
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=70.84 E-value=3.5 Score=31.37 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=30.5
Q ss_pred cccCcccccccccccCCCeeeecC--CCCcccchhhHHHhhcCCC----Cccccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLTRNG----SCPVCRECVC 259 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP--~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~ 259 (265)
..++..|.+|.+ .+ .+.... .|...||..|+. |.... .||-|+-.+.
T Consensus 12 ~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 345678999973 23 344444 588999999997 44322 3887765443
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=69.95 E-value=3 Score=31.76 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=24.6
Q ss_pred ccccccccccc------CCCeeeecCCCCcccchhhHHHh
Q 024603 211 IGCSICLEKFE------EGDSARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 211 ~~C~ICle~~~------~~~~~r~LP~CgH~FH~~CI~~W 244 (265)
..|.+|+.+-. +++.+.....|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46899987652 23455666679999999998754
No 126
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=69.69 E-value=2 Score=28.11 Aligned_cols=41 Identities=22% Similarity=0.540 Sum_probs=27.5
Q ss_pred cccccccCCCeeeecCCCCcccchhhHHHhh---cCCCCcccccc
Q 024603 215 ICLEKFEEGDSARKLPSCGHCFHSECVDKWL---TRNGSCPVCRE 256 (265)
Q Consensus 215 ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL---~~~~sCPvCR~ 256 (265)
||..... +........|...||..|+.--- ..+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6876654 43444555799999999985322 23456999975
No 127
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.66 E-value=1.4 Score=31.57 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=29.2
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCC-----CCccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN-----GSCPVCREC 257 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~-----~sCPvCR~~ 257 (265)
.|.+|.+.- ++..+.....|...||..|++.-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 566776543 334455566799999999998655422 259999863
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.56 E-value=2.3 Score=36.10 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=28.2
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHh
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~W 244 (265)
+..|.+|...|..-..-.....||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999999765555566689999999997654
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.25 E-value=3.1 Score=30.41 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=36.0
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-------CCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-------~~~sCPvCR~~v~ 259 (265)
+...|.+|...|..-..-.....||++||..|...... ....|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 45689999999887655555667999999999865432 2234777766554
No 130
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=68.77 E-value=2.1 Score=39.59 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=30.8
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhh--HHHhhc--CCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSEC--VDKWLT--RNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~C--I~~WL~--~~~sCPvCR~~v~ 259 (265)
.+.||+=...+..|.+- . .|.|.-|.+- +.+... ..-.||+|.+++.
T Consensus 249 SL~CPlS~~ri~~PvRg--~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKS--I-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEE--T-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcC--C-cCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 47899988888776544 4 5999855543 222222 2346999998774
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.74 E-value=2.4 Score=36.22 Aligned_cols=52 Identities=23% Similarity=0.512 Sum_probs=37.1
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc--------CCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT--------RNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~--------~~~sCPvCR~~v~~ 260 (265)
++..|.+|...|..-..-.....||++||..|...... ....|-.|-..+..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 34689999999987655556678999999999875532 12347777665543
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.50 E-value=2.2 Score=30.46 Aligned_cols=46 Identities=24% Similarity=0.566 Sum_probs=31.1
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcC-----CCCcccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTR-----NGSCPVCRE 256 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~-----~~sCPvCR~ 256 (265)
+..|.||...-. +..+.....|...||..|++.=|.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 347889976433 3445556679999999999854432 225999975
No 133
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=67.28 E-value=1.9 Score=31.86 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=27.9
Q ss_pred ccCcccccccccccCCCeeeecCCCC---cccchhhHHHhhc----CCCCccc-ccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCG---HCFHSECVDKWLT----RNGSCPV-CRE 256 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~Cg---H~FH~~CI~~WL~----~~~sCPv-CR~ 256 (265)
++...| ||.+... ++ ......|. ..||..|+. |. .+-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345677 9987533 34 44444554 689999985 22 2235999 985
No 134
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=67.26 E-value=2.4 Score=39.09 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=31.1
Q ss_pred CcccccccccccCCCeeeecCCCCcccchh--hHHHhhcC--CCCcccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSE--CVDKWLTR--NGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~--CI~~WL~~--~~sCPvCR~~v~~ 260 (265)
.+.||+=...+..|.+. . .|.|.-|.+ =+.+...+ .-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg--~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRA--V-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEE--T-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcC--C-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 47899988888776544 4 599985444 22222222 3469999988753
No 135
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=67.02 E-value=1.8 Score=35.19 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=33.5
Q ss_pred cCcccccccccccC-CCeeeecCCCCcccchhhHHHhhcCCC--Cccccccc
Q 024603 209 NEIGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRNG--SCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~-~~~~r~LP~CgH~FH~~CI~~WL~~~~--sCPvCR~~ 257 (265)
++..|.+|...|.- ...-+....|.|.+|..|- .|..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 56899999998642 2334556679999999997 3544333 38888753
No 136
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.57 E-value=6.5 Score=30.94 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=31.8
Q ss_pred ccCcccccccccccCCCeeeecCCCCcccchhhHHHhh------c-----CCCCccccccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWL------T-----RNGSCPVCREC 257 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL------~-----~~~sCPvCR~~ 257 (265)
..+..|.||-+. ..+.-...|-..||.+|+.+-+ + ..=.|++|+-.
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345779999754 3344555799999999998752 1 12359999753
No 137
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=66.11 E-value=2.6 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=32.4
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhc-----CCCCcccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCRECV 258 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----~~~sCPvCR~~v 258 (265)
..| ||...+..+........|.-.||..|+.---. ..-.||.|+..-
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 344 89887765555566667999999999853211 345699998653
No 138
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=63.96 E-value=1.4 Score=40.63 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhc-------CCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-------RNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-------~~~sCPvCR~~v~ 259 (265)
+...|.+|...|..-..-..+..||++||..|...... ....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 35689999998875444444557999999999876542 1244777766553
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.92 E-value=1.7 Score=33.20 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=33.2
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----CccccccccccC
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCRECVCKD 261 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~v~~~ 261 (265)
.|.||.+.-.. ..+.....|...||..|+..=+...+ .||.|+....+.
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 57888765433 34445567999999999985444322 499998766543
No 140
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=57.32 E-value=1.9 Score=29.45 Aligned_cols=51 Identities=20% Similarity=0.441 Sum_probs=32.1
Q ss_pred cccCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCC----Cccccccc
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNG----SCPVCREC 257 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~----sCPvCR~~ 257 (265)
..+...|.||+..=.....-...--|.-.||..|-.+|-.+.. .|-+||+.
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 3467899999876444333333334667788888777754333 28888763
No 141
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=56.64 E-value=1 Score=33.85 Aligned_cols=41 Identities=22% Similarity=0.578 Sum_probs=26.4
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
+..||.|..++... =++.+|..|-.. +.....||-|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHH
Confidence 37899998876541 234446666433 345567999988775
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.47 E-value=4.4 Score=30.46 Aligned_cols=46 Identities=22% Similarity=0.555 Sum_probs=31.3
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCC----CCcccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRN----GSCPVCRECV 258 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~----~sCPvCR~~v 258 (265)
.|.+|.+.-.+ +.+.....|...||..|++.=+... -.||.|+...
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57778665433 3455666799999999998655432 2499997644
No 143
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.22 E-value=19 Score=26.58 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=36.3
Q ss_pred cCcccccccccccC---CCeeeecCCCCcccchhhHHHhh-cCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEE---GDSARKLPSCGHCFHSECVDKWL-TRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~---~~~~r~LP~CgH~FH~~CI~~WL-~~~~sCPvCR~~v~ 259 (265)
....|-||=+++-. ++...-...|+--.|..|.+-=. +.++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999998753 33333334577788999987443 46778999998875
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.89 E-value=3.3 Score=31.52 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=16.2
Q ss_pred CCCcccchhhHHHhhcCCCCcccccccc
Q 024603 231 SCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 231 ~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
+||+.| .+=+.....||.|+..-
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCc
Confidence 699999 12234557899999753
No 145
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=49.78 E-value=2.8 Score=30.00 Aligned_cols=20 Identities=35% Similarity=1.014 Sum_probs=16.1
Q ss_pred CCCcccchhhHHHhhcCCCCcc
Q 024603 231 SCGHCFHSECVDKWLTRNGSCP 252 (265)
Q Consensus 231 ~CgH~FH~~CI~~WL~~~~sCP 252 (265)
.|+|.||..|-..|-. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 7999999999999843 4553
No 146
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=49.65 E-value=7.5 Score=22.13 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=8.0
Q ss_pred hhhHHHHHHHhhhcc
Q 024603 54 LGGAIVGTIFGAMKG 68 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g 68 (265)
.+|++||+.-|-+.|
T Consensus 8 AAGaVvGglGgy~lg 22 (27)
T 2lbg_A 8 AAGAVVGGLGGYMLG 22 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHH
Confidence 356666655554444
No 147
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.28 E-value=11 Score=25.80 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=26.5
Q ss_pred CcccccccccccCCCeeeecCCCCcccch-hhHHHhhcCCCCccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHS-ECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~-~CI~~WL~~~~sCPvCR~~ 257 (265)
-..|..|...+....-.. .=+..||. .|..+- ....|..|...
T Consensus 27 CF~C~~C~~~L~~~~~~~---~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAE---HEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp TCBCTTTCCBCCTTTEEE---ETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCCccccCccCCCCceEC---cCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 367888887776653221 24677887 587664 34557777643
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.38 E-value=12 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=25.3
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+.|-+.+..++.+.. -+..||.+| ..|..|++++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccC
Confidence 4578888888776665542 356677666 45677776664
No 149
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=46.33 E-value=3.1 Score=30.06 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=22.9
Q ss_pred eeecCCCCcccchhhHHHhhcCCC--Cccccccc
Q 024603 226 ARKLPSCGHCFHSECVDKWLTRNG--SCPVCREC 257 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~WL~~~~--sCPvCR~~ 257 (265)
....|.|+|.||..|-..|=+.|. +|..-++-
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w 76 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNW 76 (86)
T ss_dssp CEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHH
T ss_pred ceEeCCCCCccccccCCchhhcCCCCChHHHHHH
Confidence 356778999999999999844443 57655443
No 150
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.67 E-value=2.2 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=12.2
Q ss_pred CcccccccccccCCCee
Q 024603 210 EIGCSICLEKFEEGDSA 226 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~ 226 (265)
...||+|+.++...+.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 46788888888765544
No 151
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.93 E-value=6.2 Score=37.73 Aligned_cols=47 Identities=21% Similarity=0.477 Sum_probs=32.3
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhc-----CCCCccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT-----RNGSCPVCREC 257 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~-----~~~sCPvCR~~ 257 (265)
...| ||...+..+.....+..|.-.||..|+.---. .+-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3445 99888764555666667999999999842211 23469999854
No 152
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=42.51 E-value=5.3 Score=32.40 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=2.1
Q ss_pred ccccchhhHHH
Q 024603 80 GIGAVAGAITA 90 (265)
Q Consensus 80 ~~Ga~~gav~s 90 (265)
++||++|+.++
T Consensus 11 ~~g~~~g~~ig 21 (169)
T 3ldt_A 11 AAGGTVGLVAS 21 (169)
T ss_dssp ------CCTTH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 153
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.44 E-value=26 Score=23.32 Aligned_cols=40 Identities=28% Similarity=0.571 Sum_probs=21.3
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+-|-+.+...+.... .-+..||..| .+|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCC
Confidence 3467777777665322211 1355666655 34566665554
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.82 E-value=21 Score=28.98 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=26.1
Q ss_pred ccCcccccccccccCCCeeeecC--CCCcccchhhHHHhhc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLT 246 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP--~CgH~FH~~CI~~WL~ 246 (265)
..+..|.||-+. ..+.... .|...||..||+.++.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 346789999753 3454544 5899999999998875
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.61 E-value=22 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.504 Sum_probs=27.5
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
....|+-|-+.+.+++.+.. -+..||.+| ..|..|++++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 45679999888876666543 356777766 45777777664
No 156
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=39.58 E-value=12 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=14.5
Q ss_pred hhhHHHHHHHhhhcccccccc
Q 024603 54 LGGAIVGTIFGAMKGQTTETG 74 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g~~~~~g 74 (265)
.+|.++++++||+++.+..+-
T Consensus 15 aG~vvvv~i~~ali~VSq~D~ 35 (39)
T 3arc_X 15 SGAVVLGLTFAVLIAISQIDK 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHheeEeccCc
Confidence 356778888888887665443
No 157
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.37 E-value=21 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=12.2
Q ss_pred cccccccccccCCCeeeecCCCCcccchhh
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 240 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~C 240 (265)
..|+-|-+.+.. +.+. .-+..||.+|
T Consensus 6 ~~C~~C~~~I~~-~~~~---a~~~~~H~~C 31 (70)
T 2d8z_A 6 SGCVQCKKPITT-GGVT---YREQPWHKEC 31 (70)
T ss_dssp CBCSSSCCBCCS-SEEE---SSSSEEETTT
T ss_pred CCCcccCCeecc-ceEE---ECccccCCCC
Confidence 356666665543 2221 1345555554
No 158
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=39.30 E-value=5.1 Score=32.54 Aligned_cols=11 Identities=27% Similarity=0.749 Sum_probs=0.0
Q ss_pred hhHHHHHHHhh
Q 024603 55 GGAIVGTIFGA 65 (265)
Q Consensus 55 ~g~~~ga~~g~ 65 (265)
.|+++||.+|+
T Consensus 4 ~ga~~ga~~g~ 14 (169)
T 3ldt_A 4 SGTLIGAAAGG 14 (169)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 159
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.73 E-value=12 Score=26.99 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=6.8
Q ss_pred cccccccccccC
Q 024603 211 IGCSICLEKFEE 222 (265)
Q Consensus 211 ~~C~ICle~~~~ 222 (265)
..||.|..++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 456666655544
No 160
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.28 E-value=21 Score=24.13 Aligned_cols=42 Identities=19% Similarity=0.466 Sum_probs=24.7
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
....|+-|-+.+...+.+... -+..||..| ..|-.|++++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 356788888887654433211 356677666 346666666543
No 161
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.90 E-value=25 Score=24.48 Aligned_cols=40 Identities=25% Similarity=0.497 Sum_probs=25.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
....|.-|-+.+...+.+.. -+..||..| .+|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcC
Confidence 45689999988876666542 456777777 34555555543
No 162
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=36.37 E-value=18 Score=23.65 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=16.1
Q ss_pred hhhHHHHHHHhhhccccccccccc
Q 024603 54 LGGAIVGTIFGAMKGQTTETGFLH 77 (265)
Q Consensus 54 ~~g~~~ga~~g~~~g~~~~~g~~~ 77 (265)
.+|.++++++||+++.+..+-+-|
T Consensus 25 aG~vVvv~i~~aLi~VSq~D~v~R 48 (50)
T 3bz1_X 25 SGAVVLGLTFAVLIAISQIDKVQR 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHheeeeccCcccc
Confidence 356678888888888776554443
No 163
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=36.36 E-value=11 Score=30.14 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=18.3
Q ss_pred eecCCCCcccchhhHHHhhcCCCCccccccccccC
Q 024603 227 RKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCKD 261 (265)
Q Consensus 227 r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~~ 261 (265)
..++.|||.|-.. .....||.|-.++...
T Consensus 133 y~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 133 YVCIGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp EEESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred EECCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 3455688887533 2234799998876543
No 164
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=36.33 E-value=13 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=14.5
Q ss_pred cccccccccccCCCeeeecCCCCcccchhh
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 240 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~C 240 (265)
..|+.|-+.+.+++.+.. -+..||.+|
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc
Confidence 456666666655554432 345555554
No 165
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.32 E-value=23 Score=24.48 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=22.1
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+-|-+.+.+ +.+. --+..||.+| .+|..|++++.
T Consensus 15 ~~~C~~C~~~I~~-~~v~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDE-QPLI---FKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCS-CCCC---CSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEecc-eEEE---ECcceeCCCC--------CEeCCCCCccC
Confidence 4567888777763 3332 2455666655 35666666654
No 166
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.16 E-value=11 Score=28.32 Aligned_cols=11 Identities=27% Similarity=1.060 Sum_probs=10.1
Q ss_pred cchhhHHHhhc
Q 024603 236 FHSECVDKWLT 246 (265)
Q Consensus 236 FH~~CI~~WL~ 246 (265)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 167
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.96 E-value=33 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=14.2
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhh
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSEC 240 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~C 240 (265)
...|.-|-+.+...+.+. .-+..||..|
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C 42 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC 42 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC
Confidence 345666666665544432 1344555554
No 168
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.83 E-value=11 Score=28.23 Aligned_cols=11 Identities=45% Similarity=1.217 Sum_probs=10.1
Q ss_pred cchhhHHHhhc
Q 024603 236 FHSECVDKWLT 246 (265)
Q Consensus 236 FH~~CI~~WL~ 246 (265)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 169
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.75 E-value=35 Score=22.67 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=4.7
Q ss_pred cccccccccc
Q 024603 212 GCSICLEKFE 221 (265)
Q Consensus 212 ~C~ICle~~~ 221 (265)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4555544444
No 170
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=35.72 E-value=20 Score=22.00 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.2
Q ss_pred hhHHHHHHHh
Q 024603 55 GGAIVGTIFG 64 (265)
Q Consensus 55 ~g~~~ga~~g 64 (265)
+|.++|.++|
T Consensus 14 AGiVvG~v~g 23 (38)
T 2k1k_A 14 VAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeeehHHHHH
Confidence 4444444433
No 171
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=35.68 E-value=20 Score=29.16 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=15.4
Q ss_pred eeecCCCCcccchhhHHHhhcCCCCccccccc
Q 024603 226 ARKLPSCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
..+++.|||++-. .....||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 4445678887651 233479999754
No 172
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.23 E-value=19 Score=24.92 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=27.2
Q ss_pred cCcccccccccccCCCeeeecCCCC---cccchhhHHHhh--cCCCCcccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCG---HCFHSECVDKWL--TRNGSCPVCRECV 258 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~Cg---H~FH~~CI~~WL--~~~~sCPvCR~~v 258 (265)
+...| ||.+. ..+..+ ....|. ..||..|+.--- ...-.||.|+...
T Consensus 5 ~~~yC-~C~~~-~~g~MI-~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQV-SYGEMV-GCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCC-CCSSEE-CCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCC-CCCCEe-EeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34556 58775 344433 333443 689999996211 1223499998654
No 173
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.99 E-value=29 Score=23.04 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=19.2
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
..|+.|-+.+...+..... -+..||..| ..|-.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccC
Confidence 4566676666654322111 344555555 34555555443
No 174
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.85 E-value=28 Score=23.08 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=6.1
Q ss_pred ccccccccccc
Q 024603 211 IGCSICLEKFE 221 (265)
Q Consensus 211 ~~C~ICle~~~ 221 (265)
..|.-|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8x_A 6 SGCHQCGEFII 16 (70)
T ss_dssp SBCSSSCCBCC
T ss_pred CcCccCCCEec
Confidence 45666655554
No 175
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=34.69 E-value=16 Score=30.26 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=14.8
Q ss_pred eecCCCCcccchhhHHHhhcCCCCccccccc
Q 024603 227 RKLPSCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 227 r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
.+++.|||++-.+ .....||+|..+
T Consensus 156 ~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 4445677775422 123379999875
No 176
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.63 E-value=9.8 Score=25.67 Aligned_cols=38 Identities=18% Similarity=0.465 Sum_probs=24.5
Q ss_pred CcccccccccccCCCeeee--cCC--CCcccchhhHHHhhcC
Q 024603 210 EIGCSICLEKFEEGDSARK--LPS--CGHCFHSECVDKWLTR 247 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~--LP~--CgH~FH~~CI~~WL~~ 247 (265)
.-.||-|...++..+--.. .+. |+|.||..|..+|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3467777777665432211 223 8899999999888654
No 177
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=34.43 E-value=8.7 Score=22.16 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=8.4
Q ss_pred CCcccccccccc
Q 024603 249 GSCPVCRECVCK 260 (265)
Q Consensus 249 ~sCPvCR~~v~~ 260 (265)
..||+|+...++
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468888876654
No 178
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.41 E-value=35 Score=23.95 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=26.5
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
....|.-|-+.+.. +.+. .-+..||.+| ..|-.|++.+..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 45679999888875 3332 2567788777 457777776643
No 179
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=34.36 E-value=24 Score=24.49 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=24.7
Q ss_pred cccCcccccccccccCCCeeeecCCC-CcccchhhHHHh
Q 024603 207 LDNEIGCSICLEKFEEGDSARKLPSC-GHCFHSECVDKW 244 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~~~~~r~LP~C-gH~FH~~CI~~W 244 (265)
.++..-|.||.++ ..+|-+ .| +-.||..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEET-TTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEec-CCCCceehHHHHHHH
Confidence 3456789999988 235555 49 789999998765
No 180
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=34.28 E-value=25 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.531 Sum_probs=18.3
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
.|..|-+.+...+.+.. .-++.||..| ..|-.|++++
T Consensus 68 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 104 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 104 (131)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEEEGGG--------CBCTTTCCBC
T ss_pred ChhhcCCccCccceeEe--eCCceECccC--------cccCCCCCCC
Confidence 56666555544332211 1345556555 3466666655
No 181
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.01 E-value=29 Score=23.76 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.0
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
....|.-|-+.+... .+. .-+..||.+|. +|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~-~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS-CEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc-EEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 356899998887753 332 25677887773 4666666553
No 182
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.47 E-value=24 Score=32.73 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=31.1
Q ss_pred cCcccccccccccCCCeeeecC--CCCcccchhhHHHhhcC----------CCCcccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLP--SCGHCFHSECVDKWLTR----------NGSCPVCRE 256 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP--~CgH~FH~~CI~~WL~~----------~~sCPvCR~ 256 (265)
.+..|.+|-+. ..+.... .|...||..||+.++-. .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 46789999753 3444554 79999999999998732 225777764
No 183
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.81 E-value=28 Score=24.54 Aligned_cols=39 Identities=21% Similarity=0.462 Sum_probs=23.9
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
....|+-|-+.+. ++.+. .-+..||..| ..|..|++++.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV---ALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE---ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEEE---ECCccccccC--------CccCCCCCCCC
Confidence 3467888887774 33332 2466777666 45667766664
No 184
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.77 E-value=22 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=19.8
Q ss_pred cccccccccccCCCeeeecCCCCcccchhh
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 240 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~C 240 (265)
..|+.|-......+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 57899988887766653 2467888887
No 185
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.63 E-value=30 Score=22.85 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 024603 211 IGCSICLEKFE 221 (265)
Q Consensus 211 ~~C~ICle~~~ 221 (265)
..|+-|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 34555555554
No 186
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.69 E-value=43 Score=22.84 Aligned_cols=40 Identities=23% Similarity=0.633 Sum_probs=24.1
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+.|-+.+..++.... .-+..||.+| .+|-.|++++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccC
Confidence 3578888887776544322 1356677666 35666666654
No 187
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.54 E-value=29 Score=26.06 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=34.1
Q ss_pred cccccccccccC-CCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 211 IGCSICLEKFEE-GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 211 ~~C~ICle~~~~-~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
..|..|-..+.+ +... . +.=+..||..|..+-+..+..|..|.++|..
T Consensus 33 F~C~~C~~~L~~~~~~~-~-~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-Y-TKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECC-E-EETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeE-E-EECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 578888877753 1111 1 1357789999998877666689999998864
No 188
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.51 E-value=26 Score=22.96 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=23.9
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
...|+-|-+.+. ++.+. .-+..||..| ..|..|++++..
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCc--------CEECCCCCCCCC
Confidence 356888877777 34332 2456777666 457777776643
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.94 E-value=37 Score=22.96 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=4.6
Q ss_pred cccccccccc
Q 024603 212 GCSICLEKFE 221 (265)
Q Consensus 212 ~C~ICle~~~ 221 (265)
.|+-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (73)
T 1wig_A 7 GCDSCEKYIT 16 (73)
T ss_dssp SCSSSCCCCS
T ss_pred CcccCCCEec
Confidence 4445544443
No 190
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.82 E-value=7.8 Score=34.87 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=31.4
Q ss_pred cCcccccccccccCCCeeee---cCCCCcccchhhHHHhhcCCCCccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARK---LPSCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~---LP~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
....||+|=..-... .++. -.+=.|.+|..|-..|--....||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 457899996654432 1111 11223677888888998888889999764
No 191
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=30.59 E-value=21 Score=27.09 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=16.3
Q ss_pred eecCCCCcccchhhHHHhhcCCC-Cccccccc
Q 024603 227 RKLPSCGHCFHSECVDKWLTRNG-SCPVCREC 257 (265)
Q Consensus 227 r~LP~CgH~FH~~CI~~WL~~~~-sCPvCR~~ 257 (265)
...+.|||.|-.+ .... .||.|..+
T Consensus 74 ~~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 74 LECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp EECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EEcCCCCCEEeCC------CCCCCcCccccCC
Confidence 3444688887752 2456 79999765
No 192
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.44 E-value=27 Score=28.34 Aligned_cols=38 Identities=24% Similarity=0.684 Sum_probs=19.4
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
.|..|-+.+...+.+.. --++.||..| .+|-.|++.+.
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCCC
Confidence 46666655554332211 1355666655 35666666553
No 193
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.41 E-value=50 Score=21.93 Aligned_cols=39 Identities=21% Similarity=0.512 Sum_probs=21.3
Q ss_pred CcccccccccccC--C-CeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEE--G-DSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~--~-~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+-|-+.+.. . ..+. --+..||.+| .+|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~---a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS---FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE---CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE---ECCcccCccc--------CEeccCCCcCC
Confidence 3467777777664 2 2221 1456666665 34666665553
No 194
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=30.38 E-value=7.1 Score=29.43 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=28.2
Q ss_pred ccccccccccCCCeeeecCCCCcccchhhHHHhhc----C----CCCccccccc
Q 024603 212 GCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLT----R----NGSCPVCREC 257 (265)
Q Consensus 212 ~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~----~----~~sCPvCR~~ 257 (265)
.|..|.++...+..+.....|.+.||..|...-.. . .-.||.|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 45555555555555555667999999999764221 1 1349999753
No 195
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=29.78 E-value=43 Score=21.97 Aligned_cols=42 Identities=19% Similarity=0.508 Sum_probs=27.5
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
....|.-|-+.+...+.+... =+..||..|. .|-.|++++..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 346799998888876654221 4566777774 57777776643
No 196
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=29.52 E-value=39 Score=25.62 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=28.4
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+-|-+.+.....+.. -+..||..| .+|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4689999998887654432 567788777 46788887775
No 197
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.89 E-value=45 Score=22.74 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=18.1
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
..|+.|-+.+. +..+. .-+..||.+| ..|..|++++
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L 51 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPEC--------FACMSCKVII 51 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTS--------CBCTTTCCBC
T ss_pred CcCccCCCCcC-ceEEE---ECCceecccc--------CCccCCCCcc
Confidence 35666666665 22221 2345555554 3455555555
No 198
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.18 E-value=37 Score=22.95 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=14.5
Q ss_pred cccccccccccC---CCeeeecCCCCcccchhh
Q 024603 211 IGCSICLEKFEE---GDSARKLPSCGHCFHSEC 240 (265)
Q Consensus 211 ~~C~ICle~~~~---~~~~r~LP~CgH~FH~~C 240 (265)
..|+-|-+.+.. .+.+.. -+..||.+|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a---~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF---QDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE---TTEEEEGGG
T ss_pred CCCccCCCcccCCCCceeEEE---CCcccCccc
Confidence 457777776664 222221 345666665
No 199
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.07 E-value=32 Score=28.68 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=16.1
Q ss_pred eeecCCCCcccchhhHHHhhcCCCCccccccc
Q 024603 226 ARKLPSCGHCFHSECVDKWLTRNGSCPVCREC 257 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~ 257 (265)
..+++.|||++-. .....||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4556678887542 223579999765
No 200
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.95 E-value=41 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=16.1
Q ss_pred cccccccccccCCCeeeecCCCCcccchhh
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSEC 240 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~C 240 (265)
..|+-|-+.+.. +.+.. -+..||.+|
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVSA---LGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCCS-CCEEE---TTEEECTTT
T ss_pred CcCccccCEecc-ceEEE---CCceeCccC
Confidence 478888887763 33332 456677666
No 201
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.71 E-value=53 Score=22.23 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=19.0
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCcccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 258 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v 258 (265)
..|+-|-+.+... .+. .-+..||..| .+|-.|++++
T Consensus 16 ~~C~~C~~~I~~~-~v~---a~~~~~H~~C--------F~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GVT---YRDQPWHREC--------LVCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC-CEE---SSSSEECTTT--------CBCSSSCCBC
T ss_pred CcCCCCCCEecCc-EEE---ECCchhhhhh--------CCcccCCCcC
Confidence 4566676666542 222 2455666555 3455565555
No 202
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=25.62 E-value=8.7 Score=29.85 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=3.4
Q ss_pred hhHHHHHHHhhhccc
Q 024603 55 GGAIVGTIFGAMKGQ 69 (265)
Q Consensus 55 ~g~~~ga~~g~~~g~ 69 (265)
+++-+||++|.|.|.
T Consensus 4 gaaaaGAvvGgl~Gy 18 (121)
T 1tpx_A 4 GAAAAGAVVGGLGGY 18 (121)
T ss_dssp ----------CCTTC
T ss_pred hhHHHhHHhhcchhH
Confidence 445567777776666
No 203
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=25.39 E-value=44 Score=24.06 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=21.7
Q ss_pred CcccccccccccCCCee-eecCCCCcccchhhHHHh
Q 024603 210 EIGCSICLEKFEEGDSA-RKLPSCGHCFHSECVDKW 244 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~-r~LP~CgH~FH~~CI~~W 244 (265)
.+.|.||.+.= .+..+ -..++|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 57899996531 12222 112358899999998753
No 204
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.75 E-value=45 Score=22.77 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=19.8
Q ss_pred CcccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 210 EIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 210 ~~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
...|+-|-+.+.+ ..+.. -+..||..| .+|..|++++.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccC
Confidence 3456666666653 22221 345566555 34666665553
No 205
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.73 E-value=46 Score=22.56 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred cccccccccccCCCeeeecCCCCcccchhhHHHhhcCCCCccccccccc
Q 024603 211 IGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 211 ~~C~ICle~~~~~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
..|+-|-+.+.+ +.+.. -+..||.+| .+|..|++++.
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSC
T ss_pred CccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCC
Confidence 467777666664 22322 345566555 34666666554
No 206
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.80 E-value=70 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=12.2
Q ss_pred CcccchhhHHHhhcCCCCccccccccc
Q 024603 233 GHCFHSECVDKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 233 gH~FH~~CI~~WL~~~~sCPvCR~~v~ 259 (265)
+..||..|..+- ....|+.|.++|.
T Consensus 50 g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CEEechHHhCcC--cCccCcccCCcCC
Confidence 445555555442 2344555555554
No 207
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.42 E-value=23 Score=19.97 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=6.1
Q ss_pred Cccccccccc
Q 024603 250 SCPVCRECVC 259 (265)
Q Consensus 250 sCPvCR~~v~ 259 (265)
.||+|.+..+
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4777766543
No 208
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=22.24 E-value=52 Score=29.73 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=25.5
Q ss_pred cCccccccccccc-CCCeeeecCCCCcccchhhHHH
Q 024603 209 NEIGCSICLEKFE-EGDSARKLPSCGHCFHSECVDK 243 (265)
Q Consensus 209 ~~~~C~ICle~~~-~~~~~r~LP~CgH~FH~~CI~~ 243 (265)
....|..|-..+. ....-..+..||..+|..|..+
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 4578999988874 2333334557999999999865
No 209
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=21.76 E-value=70 Score=21.72 Aligned_cols=36 Identities=25% Similarity=0.626 Sum_probs=30.3
Q ss_pred cCcccccccccccCCCeeeecCCCCcccchh-hHHHh
Q 024603 209 NEIGCSICLEKFEEGDSARKLPSCGHCFHSE-CVDKW 244 (265)
Q Consensus 209 ~~~~C~ICle~~~~~~~~r~LP~CgH~FH~~-CI~~W 244 (265)
-...|.-|..++..+.....-...-|.||.. ||...
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 4578999999999998887777789999975 88775
No 210
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.67 E-value=36 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=16.9
Q ss_pred ccCcccccccccccCCCeeeecC--CCCccc
Q 024603 208 DNEIGCSICLEKFEEGDSARKLP--SCGHCF 236 (265)
Q Consensus 208 ~~~~~C~ICle~~~~~~~~r~LP--~CgH~F 236 (265)
-+-..||+|...+...+..-..+ .|++.|
T Consensus 8 L~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred HhheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 35678999988765433222333 466554
No 211
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=21.50 E-value=24 Score=24.50 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=11.2
Q ss_pred HHhhcCCCCccccccccc
Q 024603 242 DKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 242 ~~WL~~~~sCPvCR~~v~ 259 (265)
++||..--.||+|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 345555566888877664
No 212
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.47 E-value=34 Score=28.21 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=23.5
Q ss_pred eeecCCCCcccchhhHHH------hhc-----CCCCcccccccc
Q 024603 226 ARKLPSCGHCFHSECVDK------WLT-----RNGSCPVCRECV 258 (265)
Q Consensus 226 ~r~LP~CgH~FH~~CI~~------WL~-----~~~sCPvCR~~v 258 (265)
......|.+.||..|..- -+. ..-.||.|+..-
T Consensus 21 MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 21 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp EEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred eEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 666778999999999732 111 156899999753
No 213
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.43 E-value=24 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.216 Sum_probs=10.7
Q ss_pred HHhhcCCCCccccccccc
Q 024603 242 DKWLTRNGSCPVCRECVC 259 (265)
Q Consensus 242 ~~WL~~~~sCPvCR~~v~ 259 (265)
++||..--.||+|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 345555556777776654
No 214
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=39 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=25.5
Q ss_pred cccCcccccccccccC-CCeeeecCCCCcccchhhH
Q 024603 207 LDNEIGCSICLEKFEE-GDSARKLPSCGHCFHSECV 241 (265)
Q Consensus 207 ~~~~~~C~ICle~~~~-~~~~r~LP~CgH~FH~~CI 241 (265)
.+.+..|..|.+.|-- .......+.|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3457899999998853 2334456689999999884
No 215
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=75 Score=21.23 Aligned_cols=40 Identities=18% Similarity=0.420 Sum_probs=26.3
Q ss_pred CcccccccccccC----CCeeeecCCCCcccchhhHHHhhcCCCCcccccccccc
Q 024603 210 EIGCSICLEKFEE----GDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECVCK 260 (265)
Q Consensus 210 ~~~C~ICle~~~~----~~~~r~LP~CgH~FH~~CI~~WL~~~~sCPvCR~~v~~ 260 (265)
...|+-|-+.+.. .+.+.. =+..||..| .+|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE---CcceeCccc--------CEehhcCCCCCC
Confidence 3578899888874 233332 356778776 468888877753
No 216
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.30 E-value=48 Score=21.16 Aligned_cols=8 Identities=50% Similarity=1.302 Sum_probs=6.4
Q ss_pred Cccccccc
Q 024603 250 SCPVCREC 257 (265)
Q Consensus 250 sCPvCR~~ 257 (265)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999864
Done!