Query 024605
Match_columns 265
No_of_seqs 129 out of 1251
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 1E-48 2.2E-53 337.3 25.1 242 1-245 86-335 (336)
2 COG0667 Tas Predicted oxidored 100.0 2.4E-48 5.2E-53 340.4 26.3 230 2-235 75-309 (316)
3 COG0656 ARA1 Aldo/keto reducta 100.0 6.8E-48 1.5E-52 326.4 21.8 195 1-237 67-266 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 4.5E-45 9.8E-50 321.5 24.8 230 1-233 71-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 2.1E-44 4.6E-49 320.5 25.3 233 2-236 89-334 (346)
6 PRK10625 tas putative aldo-ket 100.0 3.8E-44 8.3E-49 319.1 25.8 234 1-235 78-339 (346)
7 KOG1577 Aldo/keto reductase fa 100.0 5.2E-44 1.1E-48 302.8 19.6 199 1-237 71-287 (300)
8 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.3E-43 1.4E-47 303.2 20.9 220 1-234 59-282 (283)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.2E-42 2.6E-47 299.0 22.3 193 1-235 55-252 (267)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 2.9E-41 6.2E-46 293.1 24.7 212 1-232 70-284 (285)
11 PLN02587 L-galactose dehydroge 100.0 4.2E-41 9.2E-46 295.9 24.9 216 1-235 73-300 (314)
12 PRK10376 putative oxidoreducta 100.0 2.1E-40 4.5E-45 288.3 24.4 203 1-235 79-288 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 6.1E-40 1.3E-44 283.2 21.7 192 2-235 68-262 (275)
14 COG4989 Predicted oxidoreducta 100.0 7.3E-40 1.6E-44 267.1 18.1 212 1-235 73-293 (298)
15 PRK14863 bifunctional regulato 100.0 2.3E-39 4.9E-44 281.6 18.9 206 3-233 72-280 (292)
16 KOG1576 Predicted oxidoreducta 100.0 1.4E-32 3E-37 226.2 20.1 208 1-224 94-310 (342)
17 COG1453 Predicted oxidoreducta 100.0 7.6E-33 1.6E-37 237.6 17.5 197 2-234 75-284 (391)
18 KOG3023 Glutamate-cysteine lig 98.0 1.1E-05 2.5E-10 66.5 6.2 70 59-129 156-227 (285)
19 cd03174 DRE_TIM_metallolyase D 86.9 5.9 0.00013 33.6 9.2 107 21-129 14-135 (265)
20 PF07021 MetW: Methionine bios 85.4 5.5 0.00012 32.5 7.6 112 22-135 43-172 (193)
21 cd00739 DHPS DHPS subgroup of 84.2 19 0.00041 30.8 10.9 103 22-130 20-128 (257)
22 PRK07535 methyltetrahydrofolat 82.6 28 0.00062 29.8 11.4 134 24-188 23-158 (261)
23 PRK10558 alpha-dehydro-beta-de 82.0 18 0.00038 31.0 9.9 68 64-132 9-79 (256)
24 PRK13958 N-(5'-phosphoribosyl) 81.4 4.6 0.0001 33.3 5.9 74 24-104 10-84 (207)
25 COG0135 TrpF Phosphoribosylant 81.1 8 0.00017 32.0 7.1 78 36-122 18-97 (208)
26 COG1140 NarY Nitrate reductase 79.1 1 2.3E-05 40.2 1.4 53 72-124 264-317 (513)
27 TIGR01496 DHPS dihydropteroate 78.7 41 0.00088 28.7 12.4 99 23-129 20-125 (257)
28 cd00423 Pterin_binding Pterin 78.5 41 0.00088 28.6 12.0 103 23-131 21-129 (258)
29 PRK05692 hydroxymethylglutaryl 77.5 28 0.00062 30.2 9.9 107 21-130 21-141 (287)
30 PRK00730 rnpA ribonuclease P; 76.7 16 0.00035 28.1 7.1 60 4-71 49-110 (138)
31 PRK01222 N-(5'-phosphoribosyl) 75.3 7.9 0.00017 32.0 5.6 74 24-104 12-86 (210)
32 TIGR03239 GarL 2-dehydro-3-deo 75.0 34 0.00075 29.1 9.5 65 66-131 4-71 (249)
33 PRK10128 2-keto-3-deoxy-L-rham 74.4 43 0.00092 28.9 10.0 66 64-130 8-76 (267)
34 PRK09856 fructoselysine 3-epim 73.7 46 0.001 28.2 10.3 52 112-183 93-144 (275)
35 cd00308 enolase_like Enolase-s 73.7 51 0.0011 27.3 10.4 87 44-134 120-208 (229)
36 cd07939 DRE_TIM_NifV Streptomy 70.0 68 0.0015 27.2 13.9 98 21-126 15-127 (259)
37 PLN02746 hydroxymethylglutaryl 69.5 85 0.0018 28.2 11.0 102 21-128 63-181 (347)
38 smart00642 Aamy Alpha-amylase 69.4 9.3 0.0002 30.3 4.5 23 111-133 72-94 (166)
39 TIGR02311 HpaI 2,4-dihydroxyhe 67.4 68 0.0015 27.2 9.7 64 65-130 3-70 (249)
40 COG1121 ZnuC ABC-type Mn/Zn tr 67.3 42 0.0009 28.7 8.2 67 23-92 112-207 (254)
41 cd03322 rpsA The starvation se 67.3 40 0.00087 30.3 8.7 84 44-131 189-274 (361)
42 cd03319 L-Ala-DL-Glu_epimerase 66.0 24 0.00052 30.9 6.9 73 62-134 217-291 (316)
43 COG2102 Predicted ATPases of P 65.9 27 0.00059 29.1 6.6 100 57-185 74-177 (223)
44 TIGR00190 thiC thiamine biosyn 65.6 1.1E+02 0.0024 28.0 11.3 86 21-126 135-220 (423)
45 PLN02363 phosphoribosylanthran 65.5 33 0.00071 29.4 7.4 75 24-104 56-131 (256)
46 cd07943 DRE_TIM_HOA 4-hydroxy- 65.4 60 0.0013 27.6 9.1 106 21-128 17-131 (263)
47 TIGR01502 B_methylAsp_ase meth 64.8 51 0.0011 30.3 8.9 71 61-131 280-357 (408)
48 PRK09427 bifunctional indole-3 61.8 35 0.00076 31.8 7.3 73 24-105 266-339 (454)
49 PF07994 NAD_binding_5: Myo-in 61.8 28 0.00061 30.5 6.4 143 25-211 131-283 (295)
50 PRK15072 bifunctional D-altron 61.5 69 0.0015 29.2 9.2 70 62-131 246-317 (404)
51 PRK14461 ribosomal RNA large s 61.3 72 0.0016 28.9 8.9 86 47-133 232-352 (371)
52 PF00809 Pterin_bind: Pterin b 60.9 35 0.00076 28.1 6.6 101 26-131 19-125 (210)
53 cd03315 MLE_like Muconate lact 58.2 1.2E+02 0.0025 25.8 10.1 73 62-134 169-243 (265)
54 cd03314 MAL Methylaspartate am 58.1 1.5E+02 0.0032 26.9 11.2 86 46-131 229-321 (369)
55 PRK14017 galactonate dehydrata 57.7 70 0.0015 28.9 8.5 70 62-131 217-288 (382)
56 PRK04452 acetyl-CoA decarbonyl 57.5 41 0.0009 29.8 6.7 90 37-131 86-184 (319)
57 cd03316 MR_like Mandelate race 57.4 54 0.0012 29.2 7.7 68 62-129 229-298 (357)
58 cd03318 MLE Muconate Lactonizi 57.2 48 0.001 29.7 7.3 72 62-133 228-301 (365)
59 TIGR02660 nifV_homocitr homoci 56.6 1.5E+02 0.0033 26.6 12.7 98 21-126 18-130 (365)
60 PRK13803 bifunctional phosphor 56.5 61 0.0013 31.5 8.3 77 24-105 12-89 (610)
61 cd03325 D-galactonate_dehydrat 56.2 94 0.002 27.7 9.0 68 62-129 216-285 (352)
62 KOG0059 Lipid exporter ABCA1 a 55.8 66 0.0014 32.8 8.7 71 22-94 669-768 (885)
63 PRK13352 thiamine biosynthesis 55.4 1.7E+02 0.0037 26.9 10.9 91 21-135 138-228 (431)
64 PRK06424 transcription factor; 55.2 49 0.0011 25.6 6.1 80 113-193 24-109 (144)
65 TIGR00048 radical SAM enzyme, 55.1 41 0.00089 30.2 6.5 87 47-133 219-333 (355)
66 cd07944 DRE_TIM_HOA_like 4-hyd 55.0 1.4E+02 0.0029 25.6 9.6 104 21-127 15-127 (266)
67 PF14871 GHL6: Hypothetical gl 55.0 24 0.00052 26.9 4.3 25 108-132 43-67 (132)
68 COG4555 NatA ABC-type Na+ tran 54.3 70 0.0015 26.7 7.0 70 22-93 104-202 (245)
69 COG2861 Uncharacterized protei 53.6 60 0.0013 27.5 6.6 41 45-86 78-132 (250)
70 cd03323 D-glucarate_dehydratas 52.4 1.1E+02 0.0023 28.0 8.8 70 62-131 250-321 (395)
71 PRK02901 O-succinylbenzoate sy 51.3 1.6E+02 0.0035 26.1 9.5 82 45-134 162-244 (327)
72 PF07287 DUF1446: Protein of u 51.0 56 0.0012 29.5 6.6 66 61-129 11-78 (362)
73 cd00740 MeTr MeTr subgroup of 50.4 1.6E+02 0.0034 25.1 12.6 107 22-134 22-131 (252)
74 COG4130 Predicted sugar epimer 50.1 1.3E+02 0.0027 25.3 7.8 62 102-183 73-137 (272)
75 PF13378 MR_MLE_C: Enolase C-t 50.0 26 0.00056 25.3 3.7 54 80-134 3-57 (111)
76 COG1751 Uncharacterized conser 49.6 1.3E+02 0.0028 23.7 8.0 87 47-134 2-95 (186)
77 PRK13796 GTPase YqeH; Provisio 49.6 1.6E+02 0.0036 26.4 9.5 80 3-88 98-177 (365)
78 TIGR03597 GTPase_YqeH ribosome 49.2 1.8E+02 0.0038 26.2 9.6 79 3-87 92-170 (360)
79 cd03327 MR_like_2 Mandelate ra 48.9 74 0.0016 28.2 7.1 68 62-129 211-280 (341)
80 COG2185 Sbm Methylmalonyl-CoA 48.5 79 0.0017 24.5 6.2 58 76-137 19-78 (143)
81 PRK01313 rnpA ribonuclease P; 48.4 1.1E+02 0.0024 23.2 7.0 58 5-70 51-113 (129)
82 TIGR01928 menC_lowGC/arch o-su 48.3 73 0.0016 28.1 6.9 86 45-134 199-286 (324)
83 TIGR01927 menC_gamma/gm+ o-suc 48.3 1.8E+02 0.0038 25.5 9.3 85 45-135 184-270 (307)
84 TIGR00735 hisF imidazoleglycer 47.3 1.3E+02 0.0029 25.4 8.2 91 32-125 160-253 (254)
85 TIGR02534 mucon_cyclo muconate 47.1 65 0.0014 28.9 6.5 73 62-134 227-301 (368)
86 PRK12331 oxaloacetate decarbox 46.9 2.5E+02 0.0053 26.2 11.0 102 22-127 22-141 (448)
87 cd07940 DRE_TIM_IPMS 2-isoprop 46.4 1.9E+02 0.004 24.7 13.8 98 21-126 15-131 (268)
88 PF00682 HMGL-like: HMGL-like 46.1 1.7E+02 0.0037 24.2 10.8 98 22-125 10-124 (237)
89 PF11242 DUF2774: Protein of u 46.0 32 0.00069 22.4 3.1 23 172-194 15-37 (63)
90 PRK13753 dihydropteroate synth 44.4 2.1E+02 0.0046 24.8 12.8 102 23-132 22-129 (279)
91 PF00697 PRAI: N-(5'phosphorib 43.7 46 0.00099 27.1 4.6 67 35-105 14-81 (197)
92 COG2089 SpsE Sialic acid synth 43.1 64 0.0014 28.6 5.5 31 188-218 139-169 (347)
93 PRK03459 rnpA ribonuclease P; 43.0 1.4E+02 0.003 22.3 7.0 59 5-71 52-114 (122)
94 PRK14460 ribosomal RNA large s 42.9 2.5E+02 0.0054 25.2 9.6 97 36-133 208-332 (354)
95 COG2069 CdhD CO dehydrogenase/ 42.9 2.4E+02 0.0051 24.9 9.0 94 36-134 160-263 (403)
96 cd08583 PI-PLCc_GDPD_SF_unchar 42.7 2E+02 0.0042 23.9 9.4 18 112-129 195-212 (237)
97 cd03317 NAAAR N-acylamino acid 42.6 1.1E+02 0.0023 27.3 7.2 85 45-133 204-290 (354)
98 COG0159 TrpA Tryptophan syntha 42.6 2.2E+02 0.0048 24.5 10.6 29 96-124 96-124 (265)
99 TIGR03849 arch_ComA phosphosul 42.2 2.1E+02 0.0044 24.3 8.2 97 29-127 11-118 (237)
100 TIGR02082 metH 5-methyltetrahy 42.1 4.5E+02 0.0098 27.9 13.9 104 24-134 366-476 (1178)
101 PF00356 LacI: Bacterial regul 41.5 46 0.001 20.2 3.2 42 173-220 2-43 (46)
102 PRK08392 hypothetical protein; 40.6 1.5E+02 0.0032 24.3 7.3 80 41-126 86-178 (215)
103 TIGR01228 hutU urocanate hydra 40.1 1E+02 0.0022 29.0 6.5 51 36-93 195-245 (545)
104 PRK02714 O-succinylbenzoate sy 40.0 2.6E+02 0.0056 24.6 9.2 85 44-134 192-277 (320)
105 PRK09490 metH B12-dependent me 39.8 5E+02 0.011 27.8 13.5 102 25-134 383-492 (1229)
106 PRK05414 urocanate hydratase; 39.7 1.1E+02 0.0023 29.0 6.6 52 35-93 203-254 (556)
107 PRK09613 thiH thiamine biosynt 39.5 3.3E+02 0.0071 25.6 11.4 105 21-127 113-237 (469)
108 PF14502 HTH_41: Helix-turn-he 39.3 33 0.00073 21.2 2.3 30 170-199 6-37 (48)
109 PRK08195 4-hyroxy-2-oxovalerat 39.3 2.8E+02 0.0061 24.7 9.5 108 19-128 18-134 (337)
110 PF05913 DUF871: Bacterial pro 39.0 30 0.00064 31.2 3.0 120 67-217 106-235 (357)
111 COG0820 Predicted Fe-S-cluster 38.5 2.3E+02 0.005 25.5 8.4 86 47-133 216-330 (349)
112 TIGR03217 4OH_2_O_val_ald 4-hy 38.2 2.9E+02 0.0063 24.6 9.8 102 20-127 18-132 (333)
113 TIGR03822 AblA_like_2 lysine-2 38.1 2.8E+02 0.0061 24.4 13.4 109 24-135 120-240 (321)
114 PRK00499 rnpA ribonuclease P; 38.1 1.6E+02 0.0035 21.5 6.9 59 5-71 42-104 (114)
115 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.8 2.6E+02 0.0057 24.0 9.9 101 22-127 17-136 (275)
116 COG1523 PulA Type II secretory 37.3 41 0.00088 33.2 3.8 82 32-131 205-287 (697)
117 PRK14457 ribosomal RNA large s 37.2 3.1E+02 0.0067 24.6 14.2 133 2-135 100-266 (345)
118 PRK14464 ribosomal RNA large s 37.0 2.1E+02 0.0046 25.6 8.0 77 57-133 224-317 (344)
119 TIGR02127 pyrF_sub2 orotidine 36.6 2.7E+02 0.0059 23.8 11.9 95 25-122 36-140 (261)
120 TIGR03247 glucar-dehydr glucar 36.4 2.4E+02 0.0053 26.2 8.6 69 62-130 268-337 (441)
121 PRK01903 rnpA ribonuclease P; 36.2 1.9E+02 0.0042 21.9 6.8 48 23-70 65-128 (133)
122 PRK14454 ribosomal RNA large s 36.0 3.2E+02 0.0069 24.4 10.1 132 2-134 100-261 (342)
123 PLN00191 enolase 35.8 2.4E+02 0.0051 26.5 8.4 82 44-129 311-395 (457)
124 PRK14456 ribosomal RNA large s 35.6 1.9E+02 0.004 26.2 7.5 77 57-133 260-353 (368)
125 TIGR02402 trehalose_TreZ malto 35.6 70 0.0015 30.6 5.1 89 44-133 94-184 (542)
126 PRK08776 cystathionine gamma-s 35.6 1.8E+02 0.0039 26.6 7.6 75 60-134 111-187 (405)
127 PF02679 ComA: (2R)-phospho-3- 35.3 1.3E+02 0.0029 25.5 6.1 98 29-127 24-131 (244)
128 PRK03031 rnpA ribonuclease P; 35.1 1.9E+02 0.0041 21.5 6.8 49 23-71 62-114 (122)
129 PF01081 Aldolase: KDPG and KH 35.0 2.5E+02 0.0055 22.9 8.0 87 24-127 18-106 (196)
130 TIGR02026 BchE magnesium-proto 34.9 3.9E+02 0.0085 25.1 12.3 102 22-127 221-341 (497)
131 PRK14459 ribosomal RNA large s 34.8 3.5E+02 0.0076 24.6 9.6 88 46-133 241-359 (373)
132 COG0052 RpsB Ribosomal protein 34.0 3E+02 0.0065 23.5 8.5 97 25-128 73-185 (252)
133 PRK07945 hypothetical protein; 33.3 3.5E+02 0.0075 24.0 9.6 37 41-79 191-227 (335)
134 cd03321 mandelate_racemase Man 33.3 1.9E+02 0.004 25.8 7.2 66 62-127 226-293 (355)
135 TIGR01428 HAD_type_II 2-haloal 33.1 91 0.002 24.8 4.8 64 28-93 61-128 (198)
136 PRK14453 chloramphenicol/florf 32.9 3.6E+02 0.0079 24.1 9.6 92 42-133 203-330 (347)
137 PF05368 NmrA: NmrA-like famil 32.8 2.4E+02 0.0051 23.0 7.4 86 42-135 21-107 (233)
138 PRK06015 keto-hydroxyglutarate 32.7 1.2E+02 0.0026 25.0 5.3 87 24-127 14-102 (201)
139 PRK09856 fructoselysine 3-epim 32.4 3E+02 0.0066 23.1 8.8 58 77-134 3-72 (275)
140 COG0761 lytB 4-Hydroxy-3-methy 32.3 2.6E+02 0.0056 24.4 7.4 69 111-215 203-277 (294)
141 COG0820 Predicted Fe-S-cluster 32.2 3.4E+02 0.0074 24.4 8.4 91 2-92 100-207 (349)
142 COG2022 ThiG Uncharacterized e 32.1 2.2E+02 0.0047 24.2 6.7 55 20-74 77-132 (262)
143 cd00419 Ferrochelatase_C Ferro 32.0 1.6E+02 0.0035 22.3 5.7 49 25-73 40-91 (135)
144 PRK14463 ribosomal RNA large s 32.0 3.8E+02 0.0081 24.0 8.9 87 47-133 211-325 (349)
145 PLN03228 methylthioalkylmalate 32.0 4.5E+02 0.0098 25.0 12.1 106 21-133 101-233 (503)
146 PF01175 Urocanase: Urocanase; 31.9 1.6E+02 0.0034 27.9 6.4 61 35-102 193-256 (546)
147 cd01320 ADA Adenosine deaminas 31.8 2.7E+02 0.0059 24.2 8.0 108 23-130 66-194 (325)
148 cd00668 Ile_Leu_Val_MetRS_core 31.8 74 0.0016 27.8 4.3 49 25-76 81-131 (312)
149 PRK14463 ribosomal RNA large s 31.7 3.4E+02 0.0074 24.3 8.5 89 2-92 102-203 (349)
150 COG2949 SanA Uncharacterized m 31.7 3.1E+02 0.0066 22.9 9.5 98 26-129 76-180 (235)
151 TIGR00216 ispH_lytB (E)-4-hydr 31.6 2.8E+02 0.006 24.1 7.6 42 172-214 225-272 (280)
152 CHL00040 rbcL ribulose-1,5-bis 31.4 3.3E+02 0.0072 25.6 8.6 109 21-134 178-300 (475)
153 cd00814 MetRS_core catalytic c 31.0 76 0.0017 27.9 4.3 47 25-74 68-114 (319)
154 COG4152 ABC-type uncharacteriz 30.8 3.6E+02 0.0077 23.4 8.0 70 22-93 101-199 (300)
155 PF00072 Response_reg: Respons 30.6 1.6E+02 0.0035 20.3 5.3 66 36-104 36-103 (112)
156 PRK14455 ribosomal RNA large s 30.6 2.2E+02 0.0048 25.6 7.1 87 47-133 223-337 (356)
157 PRK08609 hypothetical protein; 30.0 3.9E+02 0.0085 25.8 9.1 18 170-187 536-553 (570)
158 PRK01492 rnpA ribonuclease P; 30.0 2.3E+02 0.005 21.0 6.9 58 4-68 49-113 (118)
159 PRK01045 ispH 4-hydroxy-3-meth 29.9 3.3E+02 0.0071 23.9 7.8 42 172-214 227-274 (298)
160 PRK15440 L-rhamnonate dehydrat 29.9 2.2E+02 0.0048 25.9 7.2 68 61-128 247-318 (394)
161 PF01402 RHH_1: Ribbon-helix-h 29.9 96 0.0021 17.5 3.3 20 169-188 10-29 (39)
162 PF06819 Arc_PepC: Archaeal Pe 29.8 1.3E+02 0.0028 22.2 4.5 53 23-75 53-105 (110)
163 COG1151 6Fe-6S prismane cluste 29.7 2.5E+02 0.0055 26.9 7.4 51 26-79 360-413 (576)
164 PRK00077 eno enolase; Provisio 29.7 4.5E+02 0.0098 24.2 10.9 95 24-127 262-361 (425)
165 PRK04390 rnpA ribonuclease P; 29.5 2.4E+02 0.0051 20.9 7.0 49 23-71 59-110 (120)
166 COG1131 CcmA ABC-type multidru 29.5 1.5E+02 0.0033 25.7 5.8 48 44-92 155-205 (293)
167 cd04742 NPD_FabD 2-Nitropropan 29.5 2.2E+02 0.0047 26.4 6.9 88 36-130 7-103 (418)
168 PRK10550 tRNA-dihydrouridine s 29.3 3.1E+02 0.0067 24.1 7.8 90 4-104 133-226 (312)
169 PRK12360 4-hydroxy-3-methylbut 29.3 3.7E+02 0.0079 23.4 8.0 42 172-214 226-273 (281)
170 cd00248 Mth938-like Mth938-lik 29.1 1.4E+02 0.0031 21.7 4.8 52 80-131 37-88 (109)
171 PF10171 DUF2366: Uncharacteri 29.0 1.3E+02 0.0028 24.2 4.7 51 30-83 67-117 (173)
172 PRK14461 ribosomal RNA large s 28.9 3.1E+02 0.0066 24.9 7.7 93 2-94 106-225 (371)
173 KOG4175 Tryptophan synthase al 28.8 3.4E+02 0.0074 22.5 7.5 21 200-220 211-231 (268)
174 PRK14465 ribosomal RNA large s 28.7 4.3E+02 0.0093 23.7 8.6 87 47-133 216-329 (342)
175 TIGR00188 rnpA ribonuclease P 28.7 2.2E+02 0.0049 20.4 6.6 56 5-68 45-103 (105)
176 PF06506 PrpR_N: Propionate ca 28.6 76 0.0017 25.2 3.5 99 28-131 19-134 (176)
177 COG0218 Predicted GTPase [Gene 28.3 3.4E+02 0.0073 22.3 7.3 58 5-71 139-198 (200)
178 PLN02449 ferrochelatase 28.2 3.6E+02 0.0079 25.5 8.2 66 25-90 299-373 (485)
179 COG0626 MetC Cystathionine bet 28.1 3E+02 0.0065 25.2 7.6 80 58-137 112-194 (396)
180 PF07476 MAAL_C: Methylasparta 27.6 2E+02 0.0042 24.3 5.7 78 48-127 108-194 (248)
181 cd07938 DRE_TIM_HMGL 3-hydroxy 27.3 4E+02 0.0087 22.9 9.8 101 21-127 15-132 (274)
182 cd07948 DRE_TIM_HCS Saccharomy 27.3 3.9E+02 0.0085 22.8 10.7 100 21-128 17-131 (262)
183 cd08562 GDPD_EcUgpQ_like Glyce 27.1 3.4E+02 0.0074 22.0 8.5 65 66-130 123-207 (229)
184 PF13167 GTP-bdg_N: GTP-bindin 26.9 29 0.00063 24.8 0.7 67 168-236 8-81 (95)
185 cd03324 rTSbeta_L-fuconate_deh 26.9 3.3E+02 0.0071 25.1 7.8 68 62-129 280-352 (415)
186 cd02930 DCR_FMN 2,4-dienoyl-Co 26.6 4.5E+02 0.0098 23.4 8.5 12 35-46 232-243 (353)
187 PF11020 DUF2610: Domain of un 26.6 1.4E+02 0.0031 20.6 3.9 30 164-194 48-77 (82)
188 PRK04820 rnpA ribonuclease P; 26.5 3.1E+02 0.0066 21.2 7.3 60 5-71 52-114 (145)
189 TIGR00381 cdhD CO dehydrogenas 26.3 5.1E+02 0.011 23.7 11.3 103 26-136 128-254 (389)
190 COG1104 NifS Cysteine sulfinat 26.1 1.2E+02 0.0027 27.6 4.7 107 28-134 46-183 (386)
191 PRK14469 ribosomal RNA large s 26.1 4E+02 0.0087 23.7 8.0 87 47-133 212-325 (343)
192 PF09989 DUF2229: CoA enzyme a 25.8 1.1E+02 0.0025 25.4 4.2 33 96-128 186-218 (221)
193 TIGR03569 NeuB_NnaB N-acetylne 25.7 1.4E+02 0.003 26.6 4.9 17 111-127 78-94 (329)
194 PRK00164 moaA molybdenum cofac 25.7 4.5E+02 0.0098 22.9 8.7 71 57-127 142-228 (331)
195 PRK11024 colicin uptake protei 25.4 1.9E+02 0.0042 22.0 5.1 52 24-80 86-137 (141)
196 TIGR03070 couple_hipB transcri 25.4 82 0.0018 19.1 2.6 20 172-191 6-25 (58)
197 PRK11267 biopolymer transport 25.4 2.1E+02 0.0046 21.7 5.4 54 23-81 81-134 (141)
198 PRK00396 rnpA ribonuclease P; 25.3 3E+02 0.0066 20.8 6.5 49 23-71 61-112 (130)
199 PRK11893 methionyl-tRNA synthe 25.2 1.1E+02 0.0023 28.8 4.4 49 25-76 69-117 (511)
200 TIGR03822 AblA_like_2 lysine-2 25.1 3.7E+02 0.0079 23.7 7.5 98 24-124 151-260 (321)
201 PF01053 Cys_Met_Meta_PP: Cys/ 25.0 2.1E+02 0.0045 26.1 6.0 79 58-136 104-185 (386)
202 PRK14462 ribosomal RNA large s 24.9 5.2E+02 0.011 23.3 9.2 85 49-133 226-338 (356)
203 PRK10508 hypothetical protein; 24.8 1.8E+02 0.004 25.8 5.6 43 23-70 286-328 (333)
204 cd01994 Alpha_ANH_like_IV This 24.8 3.7E+02 0.0081 21.7 7.0 97 30-134 48-149 (194)
205 PF03102 NeuB: NeuB family; I 24.7 80 0.0017 26.7 3.1 31 188-218 105-135 (241)
206 TIGR01163 rpe ribulose-phospha 24.4 3.7E+02 0.008 21.5 7.4 98 24-125 9-107 (210)
207 PRK14466 ribosomal RNA large s 24.4 3.7E+02 0.0079 24.2 7.3 88 46-133 210-325 (345)
208 KOG2534 DNA polymerase IV (fam 24.0 1E+02 0.0022 27.3 3.6 115 43-189 189-320 (353)
209 cd03328 MR_like_3 Mandelate ra 24.0 2.8E+02 0.0061 24.7 6.7 69 61-129 221-293 (352)
210 PF05690 ThiG: Thiazole biosyn 23.9 2.2E+02 0.0048 24.1 5.4 54 21-74 71-125 (247)
211 TIGR01182 eda Entner-Doudoroff 23.9 4.1E+02 0.0089 21.8 10.4 87 24-127 18-106 (204)
212 PF00762 Ferrochelatase: Ferro 23.9 2.3E+02 0.0049 25.0 5.9 88 25-133 206-299 (316)
213 cd03329 MR_like_4 Mandelate ra 23.8 4.4E+02 0.0095 23.6 7.9 67 62-128 229-298 (368)
214 PRK14466 ribosomal RNA large s 23.6 4.8E+02 0.01 23.5 7.9 89 2-93 102-204 (345)
215 PRK07027 cobalamin biosynthesi 23.5 1.9E+02 0.0042 21.6 4.7 62 22-90 13-74 (126)
216 cd00818 IleRS_core catalytic c 23.4 1.2E+02 0.0026 26.9 4.2 44 28-74 89-134 (338)
217 PRK15456 universal stress prot 23.3 3.1E+02 0.0068 20.2 7.5 35 100-134 83-117 (142)
218 TIGR01060 eno phosphopyruvate 23.3 5.9E+02 0.013 23.4 10.7 80 44-127 278-362 (425)
219 cd04728 ThiG Thiazole synthase 23.1 4.8E+02 0.01 22.3 12.8 107 20-128 70-181 (248)
220 PRK15005 universal stress prot 23.0 3.1E+02 0.0067 20.1 6.6 29 103-131 88-116 (144)
221 PRK13210 putative L-xylulose 5 22.9 4.6E+02 0.0099 22.0 12.2 51 112-182 97-147 (284)
222 TIGR01329 cysta_beta_ly_E cyst 22.5 4.5E+02 0.0097 23.6 7.7 59 76-134 113-173 (378)
223 cd00405 PRAI Phosphoribosylant 22.5 2.3E+02 0.0049 22.9 5.4 65 37-104 16-82 (203)
224 PF01680 SOR_SNZ: SOR/SNZ fami 22.4 44 0.00095 27.0 1.0 15 34-48 87-101 (208)
225 PTZ00081 enolase; Provisional 22.4 6.4E+02 0.014 23.5 10.3 96 23-127 281-381 (439)
226 PRK06294 coproporphyrinogen II 22.3 2E+02 0.0042 25.9 5.3 61 22-84 166-243 (370)
227 COG1313 PflX Uncharacterized F 22.2 4.9E+02 0.011 23.0 7.3 89 36-125 209-331 (335)
228 TIGR02814 pfaD_fam PfaD family 22.1 3.4E+02 0.0074 25.3 6.8 88 36-130 12-108 (444)
229 PF02401 LYTB: LytB protein; 22.1 3.3E+02 0.0072 23.6 6.5 43 172-215 226-274 (281)
230 PRK06582 coproporphyrinogen II 22.0 1.7E+02 0.0037 26.6 4.9 61 22-84 173-250 (390)
231 PF08418 Pol_alpha_B_N: DNA po 22.0 92 0.002 26.3 3.0 49 167-216 9-60 (253)
232 PF04476 DUF556: Protein of un 22.0 4.9E+02 0.011 22.0 7.2 100 23-124 64-182 (235)
233 PRK06552 keto-hydroxyglutarate 21.9 2.4E+02 0.0052 23.3 5.4 87 24-127 23-114 (213)
234 PF01890 CbiG_C: Cobalamin syn 21.8 2.9E+02 0.0064 20.5 5.4 63 22-91 11-73 (121)
235 PRK11858 aksA trans-homoaconit 21.6 6.1E+02 0.013 22.9 13.9 99 21-127 21-134 (378)
236 cd00671 ArgRS_core catalytic c 21.6 2E+02 0.0044 23.5 4.9 45 25-74 67-111 (212)
237 TIGR03471 HpnJ hopanoid biosyn 21.5 1.1E+02 0.0023 28.6 3.6 85 39-123 303-392 (472)
238 CHL00162 thiG thiamin biosynth 21.3 5.3E+02 0.012 22.2 14.4 54 21-74 79-139 (267)
239 cd00019 AP2Ec AP endonuclease 21.3 5E+02 0.011 21.9 8.0 51 112-183 88-138 (279)
240 PRK08247 cystathionine gamma-s 21.3 5.1E+02 0.011 23.1 7.8 61 74-134 116-178 (366)
241 PRK13352 thiamine biosynthesis 21.2 3.4E+02 0.0074 25.1 6.4 120 60-215 122-246 (431)
242 PRK09282 pyruvate carboxylase 21.2 3.7E+02 0.0081 26.1 7.2 105 22-127 22-141 (592)
243 PF08260 Kinin: Insect kinin p 21.0 55 0.0012 12.2 0.6 6 257-262 2-7 (8)
244 cd04438 DEP_dishevelled DEP (D 20.7 48 0.001 23.1 0.8 37 40-77 32-68 (84)
245 PRK11613 folP dihydropteroate 20.7 5.6E+02 0.012 22.2 8.4 101 23-130 35-141 (282)
246 smart00052 EAL Putative diguan 20.6 4.6E+02 0.0099 21.1 7.7 67 59-128 133-209 (241)
247 PRK14470 ribosomal RNA large s 20.4 6E+02 0.013 22.6 7.9 77 57-133 229-322 (336)
248 cd00812 LeuRS_core catalytic c 20.4 1.4E+02 0.0031 26.1 4.0 48 26-74 69-116 (314)
249 cd03320 OSBS o-Succinylbenzoat 20.2 5.3E+02 0.011 21.7 7.7 71 62-133 167-238 (263)
250 PRK09058 coproporphyrinogen II 20.1 1.9E+02 0.0042 26.8 4.9 28 22-50 226-253 (449)
251 cd03326 MR_like_1 Mandelate ra 20.0 5.2E+02 0.011 23.4 7.6 64 62-125 245-314 (385)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1e-48 Score=337.32 Aligned_cols=242 Identities=47% Similarity=0.677 Sum_probs=214.2
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS 80 (265)
+|++++|+||++......+....++..+.++++.|+++||++|||||++||+|+..++++++++|.+++++|||+|||+|
T Consensus 86 ~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlS 165 (336)
T KOG1575|consen 86 RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLS 165 (336)
T ss_pred cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEec
Confidence 58999999999987622245677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhccCC--ceeeccccCccccc-hhhhHHHHHHHhCCeeeeccccccccccCCCCc-ccccccchhhhcCC
Q 024605 81 EACAATIRRAHAVHP--ITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKL-VESFSKYDFRKCMP 156 (265)
Q Consensus 81 ~~~~~~l~~~~~~~~--~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~-~~~~~~~~~~~~~~ 156 (265)
+++.++++++....+ +.++|++||++.+. .+++++++|++.||++++||||++|+|+ |++. ....+.++.+...+
T Consensus 166 e~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt-gk~~~~e~~~~~~~~~~~~ 244 (336)
T KOG1575|consen 166 EWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT-GKYKLGEDSRNGDKRFQFL 244 (336)
T ss_pred cCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec-cCccccccccccccccccc
Confidence 999999999999876 99999999999998 4567999999999999999999999999 6643 34455555443333
Q ss_pred c----chhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHh
Q 024605 157 K----FQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDS 232 (265)
Q Consensus 157 ~----~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~ 232 (265)
. +... ...+...+++.++|+++|+|++|+||+|+++++.++++|||+++++||+||++++...|+++++.+|++
T Consensus 245 ~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~ 322 (336)
T KOG1575|consen 245 GLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEE 322 (336)
T ss_pred ccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHH
Confidence 2 2222 567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCC
Q 024605 233 IASADAVKGDRYP 245 (265)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (265)
+.+.....+.+|.
T Consensus 323 ~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 323 IIDKILGFGPRSI 335 (336)
T ss_pred hhccccCcCCCCC
Confidence 9998877777764
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.4e-48 Score=340.40 Aligned_cols=230 Identities=46% Similarity=0.693 Sum_probs=207.9
Q ss_pred CCcEEEEeecCcccCC-C-C-CCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEe
Q 024605 2 RERVELATKFGISFAD-G-G-KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG 78 (265)
Q Consensus 2 R~~~~I~TK~~~~~~~-~-~-~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iG 78 (265)
|++++|+||+|....+ + . ..+.++++|+++++.||+||||||||||++|||+...+.++++++|++|+++||||++|
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG 154 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIG 154 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 8999999999987642 2 2 35789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHhcc-CCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcC-C
Q 024605 79 LSEACAATIRRAHAV-HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCM-P 156 (265)
Q Consensus 79 vS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~-~ 156 (265)
+||++.+++.+++.. .+++++|.+||++++..+.+++++|+++||++++|+||++|+|+ |++... ..+.|... +
T Consensus 155 ~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Lt-gk~~~~---~~~~r~~~~~ 230 (316)
T COG0667 155 VSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLT-GKYLPG---PEGSRASELP 230 (316)
T ss_pred ecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccC-CCcCCC---cchhhccccc
Confidence 999999999999998 59999999999999877778999999999999999999999999 665443 22333322 5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhhhc
Q 024605 157 KFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIAS 235 (265)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~~~ 235 (265)
.+.....+...+..+.+.++|+++|+|++|+||+|++++|.+.++|+|+++++||++|+++++..|++++++.|++...
T Consensus 231 ~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~ 309 (316)
T COG0667 231 RFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISA 309 (316)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhh
Confidence 6667778888999999999999999999999999999999999999999999999999999999999999999998875
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.8e-48 Score=326.36 Aligned_cols=195 Identities=34% Similarity=0.469 Sum_probs=177.2
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC--CCHHHHHHHHHHHHHcCcccEEe
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIG 78 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~--~~~~~~~~~le~l~~~G~ir~iG 78 (265)
+|+++||+||+++. ++..+.+.+++++||++||+||||||++|||... ..+.++|++||+++++||||+||
T Consensus 67 ~ReelFittKvw~~-------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 67 PREELFITTKVWPS-------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred CHHHeEEEeecCCc-------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEE
Confidence 58999999999986 5678999999999999999999999999999763 23679999999999999999999
Q ss_pred ccCCcHHHHHHHhcc--CCceeeccccCccccchhhhHHHHHHHhCCeeeecccccccc-ccCCCCcccccccchhhhcC
Q 024605 79 LSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGF-LSSGPKLVESFSKYDFRKCM 155 (265)
Q Consensus 79 vS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-l~~g~~~~~~~~~~~~~~~~ 155 (265)
||||+.++++++++. ..++++|++||++.+.. ++++||+++||.+++||||+.|. +. .
T Consensus 140 VSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~----------------~- 200 (280)
T COG0656 140 VSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLL----------------D- 200 (280)
T ss_pred eeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccc----------------c-
Confidence 999999999999887 45899999999999954 59999999999999999999753 22 0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhhhc
Q 024605 156 PKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIAS 235 (265)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~~~ 235 (265)
-..+.+||++||.|++|++|+|+++++. ++||++++++|+++|++++++.||++||+.|+++..
T Consensus 201 --------------~~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~ 264 (280)
T COG0656 201 --------------NPVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDR 264 (280)
T ss_pred --------------ChHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcc
Confidence 1289999999999999999999999995 999999999999999999999999999999999987
Q ss_pred cC
Q 024605 236 AD 237 (265)
Q Consensus 236 ~~ 237 (265)
..
T Consensus 265 ~~ 266 (280)
T COG0656 265 GY 266 (280)
T ss_pred cc
Confidence 54
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.5e-45 Score=321.47 Aligned_cols=230 Identities=27% Similarity=0.408 Sum_probs=188.9
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS 80 (265)
+|++++|+||+++........+++++.+++++++||++|||||||+|++|||+...+.+++|++|++|+++||||+||+|
T Consensus 71 ~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvS 150 (317)
T TIGR01293 71 RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTS 150 (317)
T ss_pred CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 38999999998643110111356899999999999999999999999999999888899999999999999999999999
Q ss_pred CCcHHHHHHHhcc------CCceeeccccCccccch-hhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhh
Q 024605 81 EACAATIRRAHAV------HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRK 153 (265)
Q Consensus 81 ~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~ 153 (265)
|++.++++++... .+++++|++||++.+.. +..++++|+++||++++|+||++|+|+ |++... .++.. +.
T Consensus 151 n~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt-g~~~~~-~~~~~-~~ 227 (317)
T TIGR01293 151 RWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS-GKYDSG-IPPYS-RA 227 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC-CCCCCC-CCCcc-cc
Confidence 9999888776432 46789999999999863 668999999999999999999999999 554322 22221 11
Q ss_pred cCC---cch----hhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCC--CCCH
Q 024605 154 CMP---KFQ----AENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSV--KLAP 224 (265)
Q Consensus 154 ~~~---~~~----~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~--~L~~ 224 (265)
..+ ++. ........+..+.+..+|+++|+|++|+||+|++++|+|+++|+|+++++|+++|+++++. +|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~ 307 (317)
T TIGR01293 228 TLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSS 307 (317)
T ss_pred cccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCH
Confidence 111 111 1112234566788999999999999999999999999999999999999999999999987 9999
Q ss_pred HHHHHHHhh
Q 024605 225 EEMAELDSI 233 (265)
Q Consensus 225 ~~~~~i~~~ 233 (265)
++++.|+++
T Consensus 308 e~~~~l~~~ 316 (317)
T TIGR01293 308 SIIHEIDSI 316 (317)
T ss_pred HHHHHHHhh
Confidence 999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.1e-44 Score=320.48 Aligned_cols=233 Identities=30% Similarity=0.499 Sum_probs=190.1
Q ss_pred CCcEEEEeecCcccCCC-CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 024605 2 RERVELATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 2 R~~~~I~TK~~~~~~~~-~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS 80 (265)
|++++|+||+|....++ ...+.+++.+++++++||++|||||||+|++|+|+...+.++++++|++|+++||||+||||
T Consensus 89 Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvS 168 (346)
T PRK09912 89 RDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGIS 168 (346)
T ss_pred CCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEec
Confidence 89999999998531111 12346799999999999999999999999999999888899999999999999999999999
Q ss_pred CCcHHHHHHHhcc-----CCceeeccccCccccchh-hhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhh-
Q 024605 81 EACAATIRRAHAV-----HPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRK- 153 (265)
Q Consensus 81 ~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~- 153 (265)
||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+ +++... .+++....
T Consensus 169 n~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt-~~~~~~-~~~~~~~~~ 246 (346)
T PRK09912 169 SYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT-GKYLNG-IPQDSRMHR 246 (346)
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc-CCCCCC-CCCCccccc
Confidence 9999988765442 367899999999997644 47999999999999999999999999 554221 12111000
Q ss_pred ---cCCcchhhhh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccC-CCCCHHHHH
Q 024605 154 ---CMPKFQAENL-EHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALS-VKLAPEEMA 228 (265)
Q Consensus 154 ---~~~~~~~~~~-~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~-~~L~~~~~~ 228 (265)
..+.|.+..+ +...+..+.+.++|+++|+|++|+||+|++++|.|.++|+|+++++||++|++++. .+|++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~ 326 (346)
T PRK09912 247 EGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELA 326 (346)
T ss_pred cccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHH
Confidence 0011222211 33456678899999999999999999999999999999999999999999999984 799999999
Q ss_pred HHHhhhcc
Q 024605 229 ELDSIASA 236 (265)
Q Consensus 229 ~i~~~~~~ 236 (265)
.|+++.++
T Consensus 327 ~l~~~~~~ 334 (346)
T PRK09912 327 QIDQHIAD 334 (346)
T ss_pred HHHHhhCc
Confidence 99998754
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.8e-44 Score=319.14 Aligned_cols=234 Identities=29% Similarity=0.393 Sum_probs=188.5
Q ss_pred CCCcEEEEeecCcccC-CC----CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCC-----------------CCCH
Q 024605 1 MRERVELATKFGISFA-DG----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----------------KIPI 58 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~-~~----~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~-----------------~~~~ 58 (265)
.|++++|+||++.... .+ ...+++++.+++++++||++|||||||||++|||+. ..++
T Consensus 78 ~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T PRK10625 78 SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSL 157 (346)
T ss_pred CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCH
Confidence 3899999999864211 00 112468999999999999999999999999999964 2357
Q ss_pred HHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc------CCceeeccccCccccchhhhHHHHHHHhCCeeeeccccc
Q 024605 59 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV------HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 132 (265)
Q Consensus 59 ~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 132 (265)
+++|++|++|+++||||+||+||++.+++.++... ..+.++|++||++++..+.+++++|+++||++++|+||+
T Consensus 158 ~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~ 237 (346)
T PRK10625 158 LETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLA 237 (346)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEecccc
Confidence 89999999999999999999999999888765431 357889999999998766789999999999999999999
Q ss_pred cccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHH
Q 024605 133 QGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLN 212 (265)
Q Consensus 133 ~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~ 212 (265)
+|+|+ |++.....+........+.|.....+...+..+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 238 ~G~Lt-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 238 FGTLT-GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred Ceecc-CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999 55322211221110001112111123345667889999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHhhhc
Q 024605 213 ENIQALSVKLAPEEMAELDSIAS 235 (265)
Q Consensus 213 en~~~~~~~L~~~~~~~i~~~~~ 235 (265)
+|+++.+++|++++++.|+++.+
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999975
No 7
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=5.2e-44 Score=302.85 Aligned_cols=199 Identities=29% Similarity=0.427 Sum_probs=177.6
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC----------------CCHHHHHHH
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----------------IPIEVTIGE 64 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~----------------~~~~~~~~~ 64 (265)
+|+++||+||+++. .+.++.++.++++||++||+||+|||++|||..- ..+.++|++
T Consensus 71 ~RediFiTSKlw~~-------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 71 KREDIFITSKLWPT-------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred chhhheeeeccCcc-------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 58999999999985 4689999999999999999999999999999543 235689999
Q ss_pred HHHHHHcCcccEEeccCCcHHHHHHHhcc--CCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCc
Q 024605 65 LKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKL 142 (265)
Q Consensus 65 le~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~ 142 (265)
||+++++|++|+||||||+..++++++.. .+|.++|+++|++.+ +.++++||+++||.|.|||||+++.-. .
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~~----~ 217 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGRG----S 217 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCCc----c
Confidence 99999999999999999999999999887 678999999999888 568999999999999999999986310 0
Q ss_pred ccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCC
Q 024605 143 VESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKL 222 (265)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L 222 (265)
.+ + ....+.+||+++|.|++|++|||+++++. +|||.++|++||+||++++++.|
T Consensus 218 --~l-----------l----------~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~L 272 (300)
T KOG1577|consen 218 --DL-----------L----------EDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFEL 272 (300)
T ss_pred --cc-----------c----------cCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccC
Confidence 00 0 12379999999999999999999999998 99999999999999999999999
Q ss_pred CHHHHHHHHhhhccC
Q 024605 223 APEEMAELDSIASAD 237 (265)
Q Consensus 223 ~~~~~~~i~~~~~~~ 237 (265)
|++|++.|+......
T Consensus 273 t~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 273 TEEDMKKLDSLNSNE 287 (300)
T ss_pred CHHHHHHHhhccccc
Confidence 999999999887644
No 8
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=6.3e-43 Score=303.23 Aligned_cols=220 Identities=33% Similarity=0.475 Sum_probs=181.1
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCC-HHHHHHHHHHHHHcCcccEEec
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGL 79 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~-~~~~~~~le~l~~~G~ir~iGv 79 (265)
+|++++|+||+... ......++++.+++++++||++||+||||+|++|+|+.... ..++|++|++|+++|+||+|||
T Consensus 59 ~r~~~~i~tK~~~~--~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 136 (283)
T PF00248_consen 59 PRDDIFISTKVYGD--GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGV 136 (283)
T ss_dssp TGGGSEEEEEEESS--SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccc
Confidence 58999999999111 11224679999999999999999999999999999999888 8999999999999999999999
Q ss_pred cCCcHHHHHHH--hccCCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCccc-ccccchhhhcCC
Q 024605 80 SEACAATIRRA--HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVE-SFSKYDFRKCMP 156 (265)
Q Consensus 80 S~~~~~~l~~~--~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~-~~~~~~~~~~~~ 156 (265)
|||+++.++++ ....+|+++|++||++++....+++++|+++||++++|+||++|.|+ +++... ..+.....
T Consensus 137 s~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~-~~~~~~~~~~~~~~~---- 211 (283)
T PF00248_consen 137 SNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLT-GKYKSPPPPPSRASL---- 211 (283)
T ss_dssp ES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGG-TTTTTTTTSTTTSGS----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccc-cccccCCCccccccc----
Confidence 99999999998 55578999999999997777789999999999999999999999998 443221 11111000
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhhh
Q 024605 157 KFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIA 234 (265)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~~ 234 (265)
.........+.++++++|.|++|+||+|+++++.+.++|+|+++++|+++|+++++++||+++++.|++++
T Consensus 212 -------~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 212 -------RDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp -------STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred -------chhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 00234466899999999999999999999999999999999999999999999999999999999999875
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.2e-42 Score=299.00 Aligned_cols=193 Identities=27% Similarity=0.390 Sum_probs=173.3
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC--CCHHHHHHHHHHHHHcCcccEEe
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEGKIKYIG 78 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~--~~~~~~~~~le~l~~~G~ir~iG 78 (265)
+|++++|+||++.. ..+++.+++++++||++||+||||+|++|+|++. .+.+++|++|++++++||||+||
T Consensus 55 ~R~~v~i~TK~~~~-------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iG 127 (267)
T PRK11172 55 PRDELFITTKIWID-------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIG 127 (267)
T ss_pred ChhHeEEEEEeCCC-------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Confidence 38999999998643 4679999999999999999999999999999764 46789999999999999999999
Q ss_pred ccCCcHHHHHHHhcc---CCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcC
Q 024605 79 LSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCM 155 (265)
Q Consensus 79 vS~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~ 155 (265)
||||+.++++++++. .+++++|++||++++. .+++++|+++||+|++|+||++|.+. + .
T Consensus 128 vSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~-~---------------~ 189 (267)
T PRK11172 128 ISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVL-K---------------D 189 (267)
T ss_pred EccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCccc-C---------------C
Confidence 999999999888764 3689999999999874 58999999999999999999998654 0 0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhhhc
Q 024605 156 PKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIAS 235 (265)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~~~ 235 (265)
..+.++|+++|.|++|+||+|+++++. ++|+|+++++|+++|+++++++||+++++.|+++.+
T Consensus 190 ---------------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~ 252 (267)
T PRK11172 190 ---------------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDR 252 (267)
T ss_pred ---------------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhcc
Confidence 158889999999999999999999975 799999999999999999999999999999999875
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.9e-41 Score=293.13 Aligned_cols=212 Identities=42% Similarity=0.618 Sum_probs=185.3
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCC-HHHHHHHHHHHHHcCcccEEec
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP-IEVTIGELKKLVEEGKIKYIGL 79 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~-~~~~~~~le~l~~~G~ir~iGv 79 (265)
.|++++|+||++..... ..+++++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||+
T Consensus 70 ~R~~~~i~tK~~~~~~~--~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 147 (285)
T cd06660 70 PREEVFIATKVGPRPGD--GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGV 147 (285)
T ss_pred CcCcEEEEeeecCCCCC--CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Confidence 38999999999875311 13478999999999999999999999999999987766 8899999999999999999999
Q ss_pred cCCcHHHHHHHhcc--CCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCc
Q 024605 80 SEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPK 157 (265)
Q Consensus 80 S~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~ 157 (265)
||++.+.+.+++.. .+|+++|++||++++....+++++|+++||++++|+||++|.++.........+.
T Consensus 148 S~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~--------- 218 (285)
T cd06660 148 SNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE--------- 218 (285)
T ss_pred eCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh---------
Confidence 99999999999888 8999999999999987656799999999999999999999998722211110000
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHh
Q 024605 158 FQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDS 232 (265)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~ 232 (265)
......+..++++++.+++|+|++|++++|.++++|+|+++++|+++|+++..++|++++++.|++
T Consensus 219 ---------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 ---------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred ---------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 114567999999999999999999999999999999999999999999999999999999999976
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4.2e-41 Score=295.92 Aligned_cols=216 Identities=23% Similarity=0.331 Sum_probs=178.4
Q ss_pred CCCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC---CCHHHHHHHHHHHHHcCcccEE
Q 024605 1 MRERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IPIEVTIGELKKLVEEGKIKYI 77 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~---~~~~~~~~~le~l~~~G~ir~i 77 (265)
+|++++|+||++.... ..+++++.+++++++||++||+||||+|++|+|+.. ...+++|++|++|+++||||+|
T Consensus 73 ~R~~v~I~TK~~~~~~---~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 149 (314)
T PLN02587 73 PREKYVVSTKCGRYGE---GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFI 149 (314)
T ss_pred CcceEEEEeccccCCC---CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEE
Confidence 3899999999985321 125689999999999999999999999999999743 3457899999999999999999
Q ss_pred eccCCcHHHHHHHhcc---C--CceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhh
Q 024605 78 GLSEACAATIRRAHAV---H--PITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFR 152 (265)
Q Consensus 78 GvS~~~~~~l~~~~~~---~--~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~ 152 (265)
|+|||+.++++++... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+ +++...
T Consensus 150 GvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~-~~~~~~-------- 219 (314)
T PLN02587 150 GITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLT-ENGPPE-------- 219 (314)
T ss_pred EecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccC-CCCCCC--------
Confidence 9999999888776543 2 2334578888877643 48999999999999999999999998 432110
Q ss_pred hcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccC----CCCCHHHHH
Q 024605 153 KCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALS----VKLAPEEMA 228 (265)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~----~~L~~~~~~ 228 (265)
+.. ..+......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+++.. .+|++++++
T Consensus 220 -----~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~ 293 (314)
T PLN02587 220 -----WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLS 293 (314)
T ss_pred -----CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 100 0123455677889999999999999999999999999999999999999999999976 379999999
Q ss_pred HHHhhhc
Q 024605 229 ELDSIAS 235 (265)
Q Consensus 229 ~i~~~~~ 235 (265)
+|+++.+
T Consensus 294 ~l~~~~~ 300 (314)
T PLN02587 294 EVEAILA 300 (314)
T ss_pred HHHHhhc
Confidence 9999885
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-40 Score=288.34 Aligned_cols=203 Identities=28% Similarity=0.424 Sum_probs=175.3
Q ss_pred CCCcEEEEeecCcccCC-C-CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCC-----CCCHHHHHHHHHHHHHcCc
Q 024605 1 MRERVELATKFGISFAD-G-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGK 73 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~-~-~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~-----~~~~~~~~~~le~l~~~G~ 73 (265)
.|++++|+||+|....+ + ...+++++.+++++++||++|||||||+|++|+++. .....++|++|++|+++||
T Consensus 79 ~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gk 158 (290)
T PRK10376 79 YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGL 158 (290)
T ss_pred CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCc
Confidence 38999999999753321 1 224678999999999999999999999999988521 2346789999999999999
Q ss_pred ccEEeccCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhh
Q 024605 74 IKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRK 153 (265)
Q Consensus 74 ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~ 153 (265)
||+||+|||+.++++++.+..+++++|++||++++. ..+++++|+++||++++|+||+++...
T Consensus 159 ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~~~---------------- 221 (290)
T PRK10376 159 VRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFTPL---------------- 221 (290)
T ss_pred eeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCChh----------------
Confidence 999999999999999998888899999999999875 357999999999999999999743100
Q ss_pred cCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 024605 154 CMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSI 233 (265)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~ 233 (265)
..+.+.++|+++|+|++|+||+|+++++.+.++|+|+++++|+++|+++.++.|++++++.|+++
T Consensus 222 ---------------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~ 286 (290)
T PRK10376 222 ---------------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGI 286 (290)
T ss_pred ---------------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 02478899999999999999999999876678999999999999999999999999999999988
Q ss_pred hc
Q 024605 234 AS 235 (265)
Q Consensus 234 ~~ 235 (265)
.+
T Consensus 287 ~~ 288 (290)
T PRK10376 287 AR 288 (290)
T ss_pred Hh
Confidence 64
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=6.1e-40 Score=283.17 Aligned_cols=192 Identities=25% Similarity=0.341 Sum_probs=169.5
Q ss_pred CCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcccEEecc
Q 024605 2 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 2 R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~ir~iGvS 80 (265)
|++++|+||++.. +++.+++++++||++||+||||+|++|+|+... ...++|++|++++++|+||+||+|
T Consensus 68 R~~~~i~tK~~~~---------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 138 (275)
T PRK11565 68 REELFITTKLWND---------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVC 138 (275)
T ss_pred HHHEEEEEEecCc---------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeec
Confidence 7899999998642 578999999999999999999999999998653 467999999999999999999999
Q ss_pred CCcHHHHHHHhcc--CCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcc
Q 024605 81 EACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKF 158 (265)
Q Consensus 81 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~ 158 (265)
|++.+++++++.. ..+.++|++||++.+ ..+++++|+++||++++|+||++|... .+
T Consensus 139 n~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G~~~-------------------~~ 197 (275)
T PRK11565 139 NFQIHHLQRLIDETGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQGGKG-------------------VF 197 (275)
T ss_pred cCCHHHHHHHHHhCCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCCCcc-------------------cc
Confidence 9999999888754 357899999999887 357999999999999999999976310 00
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhhhc
Q 024605 159 QAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIAS 235 (265)
Q Consensus 159 ~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~~~ 235 (265)
. .+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++.++.|+++++++|+++..
T Consensus 198 ~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 198 D----------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred c----------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 0 1368899999999999999999999976 699999999999999999999999999999999975
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=7.3e-40 Score=267.06 Aligned_cols=212 Identities=26% Similarity=0.402 Sum_probs=188.7
Q ss_pred CCCcEEEEeecCcccCCC-----CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCccc
Q 024605 1 MRERVELATKFGISFADG-----GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 75 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~-----~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir 75 (265)
.|+++.|+||||...... ..++++.++|..++++||.+|+|||+|++++|+||+-.+.+|+.+|+..|++.||+|
T Consensus 73 lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr 152 (298)
T COG4989 73 LREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVR 152 (298)
T ss_pred hhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCee
Confidence 389999999999764322 457889999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcHHHHHHHhcc--CCceeeccccCccccc-hhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhh
Q 024605 76 YIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFR 152 (265)
Q Consensus 76 ~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~ 152 (265)
++|||||++.+++-+.+. .++.++|++.|++... ..++.+++|+.+.|..++||||++|.+..|.
T Consensus 153 ~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~------------ 220 (298)
T COG4989 153 HFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD------------ 220 (298)
T ss_pred eeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC------------
Confidence 999999999999888776 3479999999999865 3478999999999999999999998665221
Q ss_pred hcCCcchhhhhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHH
Q 024605 153 KCMPKFQAENLEHNKKLFERVNEIAMRKG-CTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELD 231 (265)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~~-~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~ 231 (265)
+.......++..+|+++| .|..+++++|++.+|.-..+|+|+.++++|++.+++.+..||.+++-+|.
T Consensus 221 -----------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy 289 (298)
T COG4989 221 -----------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIY 289 (298)
T ss_pred -----------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHH
Confidence 112335668999999999 79999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 024605 232 SIAS 235 (265)
Q Consensus 232 ~~~~ 235 (265)
.+..
T Consensus 290 ~Aa~ 293 (298)
T COG4989 290 TAAI 293 (298)
T ss_pred HHhc
Confidence 8874
No 15
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.3e-39 Score=281.60 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=172.3
Q ss_pred CcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC-CCH-HHHHHHHHHHHHcCcccEEecc
Q 024605 3 ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPI-EVTIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 3 ~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~-~~~-~~~~~~le~l~~~G~ir~iGvS 80 (265)
++++|+||.. +.+++.+++++++||++|||||||+|++|+|+.. .+. .++|++|++|+++||||+||+|
T Consensus 72 ~~~~i~tk~~---------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvS 142 (292)
T PRK14863 72 FRVTLSTVRA---------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVS 142 (292)
T ss_pred eEeecccccc---------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeee
Confidence 5688888842 2468999999999999999999999999999763 233 5789999999999999999999
Q ss_pred CCcHHHHHHHhccCCceeeccccCccccchh-hhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcch
Q 024605 81 EACAATIRRAHAVHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQ 159 (265)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~ 159 (265)
||+++++.++....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|+ +.. ...+ ..
T Consensus 143 n~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~-~~~--~~~~--------~~-- 209 (292)
T PRK14863 143 AHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF-LPP--DRVP--------AQ-- 209 (292)
T ss_pred ccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc-CCc--ccCc--------cc--
Confidence 9999998888777889999999999998653 46999999999999999999999997 221 0000 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCHHHHHHHHhh
Q 024605 160 AENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSI 233 (265)
Q Consensus 160 ~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~~~~~~i~~~ 233 (265)
+......+..+..++.+.++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.++++..+++|..-
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 210 ---LKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred ---hhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCC
Confidence 11223445667778888899999999999999999999999999999999999999988988877666543
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.4e-32 Score=226.16 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=175.5
Q ss_pred CCCcEEEEeecCcccCCC-CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC----CCHHHHHHHHHHHHHcCccc
Q 024605 1 MRERVELATKFGISFADG-GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK----IPIEVTIGELKKLVEEGKIK 75 (265)
Q Consensus 1 ~R~~~~I~TK~~~~~~~~-~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~----~~~~~~~~~le~l~~~G~ir 75 (265)
+|+.+||+||+|....+. ...+|+++.+++++++||+||++||||++++|..+.. ..+.|++.+|++++++||||
T Consensus 94 PR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~R 173 (342)
T KOG1576|consen 94 PREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIR 173 (342)
T ss_pred ChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCcee
Confidence 699999999999865433 4578999999999999999999999999999988654 23569999999999999999
Q ss_pred EEeccCCcHHHHHHHhcc--CCceeec--cccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchh
Q 024605 76 YIGLSEACAATIRRAHAV--HPITAVQ--LEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDF 151 (265)
Q Consensus 76 ~iGvS~~~~~~l~~~~~~--~~~~~~q--~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~ 151 (265)
+||++.++...+.+..+. +.++++. .+|++.+.. .-..+++.+.+|++|++-++++.|+|+ ...
T Consensus 174 fiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt-~~g---------- 241 (342)
T KOG1576|consen 174 FIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT-NQG---------- 241 (342)
T ss_pred EeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh-cCC----------
Confidence 999999999999988877 4578877 566665554 246778889999999999999999998 221
Q ss_pred hhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCCCCCH
Q 024605 152 RKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSVKLAP 224 (265)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~~L~~ 224 (265)
.|.|++. .++.++...+-.++|++.|+++..+|+.|+++.++++++++|+++.++++.|+++....||.
T Consensus 242 ---p~~wHPa-S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 242 ---PPPWHPA-SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred ---CCCCCCC-CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 1223332 34566777788999999999999999999999999999999999999999999987767777
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.6e-33 Score=237.61 Aligned_cols=197 Identities=28% Similarity=0.377 Sum_probs=170.9
Q ss_pred CCcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHH-----HHHHHHHHHHHcCcccE
Q 024605 2 RERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-----VTIGELKKLVEEGKIKY 76 (265)
Q Consensus 2 R~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~-----~~~~~le~l~~~G~ir~ 76 (265)
|++++++||+...+ .-+++.+++-++++|++||+||+|+|++|+.+.+. ++ ++++++++++++|+||+
T Consensus 75 Rekv~LaTKlp~~~------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~-~~k~~~~g~~df~~kak~eGkIr~ 147 (391)
T COG1453 75 REKVKLATKLPSWP------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET-WEKIERLGVFDFLEKAKAEGKIRN 147 (391)
T ss_pred cceEEEEeecCCcc------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH-HHHHHccChHHHHHHHHhcCcEEE
Confidence 89999999998432 34799999999999999999999999999998743 22 47999999999999999
Q ss_pred EeccCC-cHHHHHHHhccCCceeeccccCccccchh--hhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhh
Q 024605 77 IGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRDVE--AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRK 153 (265)
Q Consensus 77 iGvS~~-~~~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~ 153 (265)
+|+|.| +.+.+.+++...+++++|++||.++..-. .+.+++|.++|++|+.++|+.+|-|. + +
T Consensus 148 ~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~---~---~-------- 213 (391)
T COG1453 148 AGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLL---Y---N-------- 213 (391)
T ss_pred eeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcc---c---C--------
Confidence 999998 46789999999999999999999997633 38999999999999999999999776 1 0
Q ss_pred cCCcchhhhhHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCC--C-CCHHHHH
Q 024605 154 CMPKFQAENLEHNKKLFERVNEIAMRKG--CTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSV--K-LAPEEMA 228 (265)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~ia~~~~--~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~--~-L~~~~~~ 228 (265)
.| +.+.+++++.+ .||+..|+||++++|.|+++++|+++++|++||++.++. + ||++|..
T Consensus 214 -vP--------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~ 278 (391)
T COG1453 214 -VP--------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQ 278 (391)
T ss_pred -CC--------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHH
Confidence 11 26777887764 689999999999999999999999999999999998863 3 9999888
Q ss_pred HHHhhh
Q 024605 229 ELDSIA 234 (265)
Q Consensus 229 ~i~~~~ 234 (265)
-|.++.
T Consensus 279 il~~v~ 284 (391)
T COG1453 279 ILEKVE 284 (391)
T ss_pred HHHHHH
Confidence 887765
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.03 E-value=1.1e-05 Score=66.48 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCceeeccccCccccchhhhHHHHHHHhCCeeeecc
Q 024605 59 EVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 59 ~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 129 (265)
.+.|+.||+++.+|+|..||+|.++..+++++++. ..|..+|+...-...-+ .+|.+||.+++|.+..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 47899999999999999999999999999999987 67888888777655443 589999999999988764
No 19
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.90 E-value=5.9 Score=33.55 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcC-cccEEeccCCcHHHHHHHhccCCceee
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAV 99 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~ 99 (265)
..++.+...+ +-+.|..+|+++|.+-..-.+.......+.++.++.+++.+ .++...++.-..+.++.+.+.+ ++.+
T Consensus 14 ~~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i 91 (265)
T cd03174 14 ATFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEV 91 (265)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEE
Confidence 3566776655 44558889999999888655422222345788888999988 5777677765556666666653 5556
Q ss_pred ccccCccc--------cc------hhhhHHHHHHHhCCeeeecc
Q 024605 100 QLEWSLWS--------RD------VEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 100 q~~~~~~~--------~~------~~~~l~~~~~~~gi~v~a~s 129 (265)
++.....+ +. .-...++++++.|+.+...-
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 65554431 11 11467888999998766544
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=85.39 E-value=5.5 Score=32.46 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=78.4
Q ss_pred CCCHHHHHHHH-----------HHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHH
Q 024605 22 RGDPAYVRACC-----------EASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 90 (265)
Q Consensus 22 ~~~~~~i~~~~-----------~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~ 90 (265)
+.+.+.+.+++ ++.|....-+.+|.+.|..- -+......+.|+++.+=|+---+++.||..++.+.-
T Consensus 43 Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~ 120 (193)
T PF07021_consen 43 EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQ 120 (193)
T ss_pred ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHH
Confidence 45667676664 44555666667777776431 122334556678888889988899999988776544
Q ss_pred hc-c-CCceeeccccCccccch-----hhhHHHHHHHhCCeeeecccccccc
Q 024605 91 HA-V-HPITAVQLEWSLWSRDV-----EAEIVPTCRELGIGIVAYGPLGQGF 135 (265)
Q Consensus 91 ~~-~-~~~~~~q~~~~~~~~~~-----~~~l~~~~~~~gi~v~a~spl~~G~ 135 (265)
+- . .-|.+-.++|+-++..- -++.-++|++.|+.+.-..++.++.
T Consensus 121 l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 121 LLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 33 3 34667788998887541 1678899999999999999998864
No 21
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=84.21 E-value=19 Score=30.79 Aligned_cols=103 Identities=20% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEE-eeccCCCC-C----HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCC
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTKI-P----IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHP 95 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~-lH~~~~~~-~----~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~ 95 (265)
.++.+.+.+...+.++. |-|+||+=. -.+|+... . ++.+...++.+++.-.+- +.+-++.++.++++++.+.
T Consensus 20 ~~~~~~~~~~a~~~~~~-GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAE-GADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHC-CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC
Confidence 35667666666666544 999999963 22344331 2 223445566677663443 7888999999999998753
Q ss_pred ceeeccccCccccchhhhHHHHHHHhCCeeeeccc
Q 024605 96 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 96 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
.-+| ..+....+ ..+++.+.+.|+.++.+..
T Consensus 98 ~iIN--disg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 98 DIIN--DVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CEEE--eCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 2222 22333221 5789999999999999543
No 22
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=82.60 E-value=28 Score=29.79 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCceeecc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAVQL 101 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~ 101 (265)
+.+.+.+...+.. .-|-|+||+=.- .......+.+...++.+++.-. .-+.+-++.++.++++++. +..-++-+
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 4455555444443 559999999753 2222334456666666665433 2478888999999999887 43333322
Q ss_pred ccCccccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhC
Q 024605 102 EWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKG 181 (265)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~ 181 (265)
+..... ...+++.+++.|+.++...--..|. | ...+...+..+.+.+.+.+.|
T Consensus 99 --s~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~--------------------P----~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 99 --SAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI--------------------P----KDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred --CCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC--------------------C----CCHHHHHHHHHHHHHHHHHcC
Confidence 222211 3478999999999988765332331 0 001223445556677777888
Q ss_pred CCHHHHH
Q 024605 182 CTPAQLA 188 (265)
Q Consensus 182 ~s~~q~a 188 (265)
++..++.
T Consensus 152 I~~~~Ii 158 (261)
T PRK07535 152 IPPEDIY 158 (261)
T ss_pred CCHhHEE
Confidence 8766554
No 23
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=82.04 E-value=18 Score=30.97 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=42.7
Q ss_pred HHHHHHHcCcccEEec-cCCcHHHHHHHhccCCcee--eccccCccccchhhhHHHHHHHhCCeeeeccccc
Q 024605 64 ELKKLVEEGKIKYIGL-SEACAATIRRAHAVHPITA--VQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 132 (265)
Q Consensus 64 ~le~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~--~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 132 (265)
.|.+..++|+. .+|+ .......+.+++....||+ +=.++.+++...-..++..|+..|+..+++-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566875 4554 2333344555555544444 4557888887655788888999999888876553
No 24
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=81.43 E-value=4.6 Score=33.34 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 102 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 102 (265)
+.+.++. +..+|.||+=+.+...-....+.+.+ ..+.+.. .+.++.+||. |.+++.+.++++...++++|++
T Consensus 10 ~~eda~~-----~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 10 TIKDVTA-----ASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 4555543 45599999999754321122233333 3333222 3568899996 7889999999998999999987
Q ss_pred cC
Q 024605 103 WS 104 (265)
Q Consensus 103 ~~ 104 (265)
-+
T Consensus 83 G~ 84 (207)
T PRK13958 83 GT 84 (207)
T ss_pred CC
Confidence 54
No 25
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=81.14 E-value=8 Score=31.97 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=52.7
Q ss_pred HhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCc-ccEEecc-CCcHHHHHHHhccCCceeeccccCccccchhhh
Q 024605 36 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLS-EACAATIRRAHAVHPITAVQLEWSLWSRDVEAE 113 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 113 (265)
...+|.||+=+++.-. .+..-..+...++.+... ++.+||. |.+.+.+.++++...++.+|++-.. ..+
T Consensus 18 a~~~gad~iG~If~~~----SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPK----SPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCC----CCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 4568999998887542 112222344444444444 8899997 5688899999999999999987763 345
Q ss_pred HHHHHHHhC
Q 024605 114 IVPTCRELG 122 (265)
Q Consensus 114 l~~~~~~~g 122 (265)
.++..+...
T Consensus 89 ~~~~l~~~~ 97 (208)
T COG0135 89 YIDQLKEEL 97 (208)
T ss_pred HHHHHHhhc
Confidence 666666654
No 26
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=79.10 E-value=1 Score=40.15 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=36.6
Q ss_pred CcccEEeccCCcHHHHHHHhccCC-ceeeccccCccccchhhhHHHHHHHhCCe
Q 024605 72 GKIKYIGLSEACAATIRRAHAVHP-ITAVQLEWSLWSRDVEAEIVPTCRELGIG 124 (265)
Q Consensus 72 G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 124 (265)
|+|||+||--++.+++.++.+... -+..+.+-.++....+..+++.+++.||.
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 999999999999999988876632 23333344444333345777777777765
No 27
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=78.70 E-value=41 Score=28.73 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEE-eeccCCCC-CHH-H---HHHHHHHHHHc-CcccEEeccCCcHHHHHHHhccCC
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYY-QHRVDTKI-PIE-V---TIGELKKLVEE-GKIKYIGLSEACAATIRRAHAVHP 95 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~-lH~~~~~~-~~~-~---~~~~le~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 95 (265)
.+++.+.+...+.++. |.|+||+=- --+|+... ..+ | +...++.+++. +. -+.+-++.++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~~~-GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERMLEE-GADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 5677777777766644 999999932 12333321 222 2 66666777666 43 47888999999999998754
Q ss_pred ceeeccccCccccchhhhHHHHHHHhCCeeeecc
Q 024605 96 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 96 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 129 (265)
.-++-+.. .. ..++++.+.+.|..++.+.
T Consensus 97 ~iINsis~--~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDVSG--GQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEECCC--CC---CchhHHHHHHcCCcEEEEe
Confidence 33333322 21 3478899999999999854
No 28
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.53 E-value=41 Score=28.64 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEe-eccCCC-----CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCc
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTK-----IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 96 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~l-H~~~~~-----~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 96 (265)
.+.+.+.+..++.+ .-|-|+||+=.- -+|+.. ...+.+...++.+++.-.+ -+.+-++.++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46677777666665 449999999752 334321 1223466777777766333 388889999999999987633
Q ss_pred eeeccccCccccchhhhHHHHHHHhCCeeeecccc
Q 024605 97 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 97 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
-++ ..+.... ...+++.+.+.|..++.+..-
T Consensus 99 iIN--dis~~~~--~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 99 IIN--DVSGGRG--DPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred EEE--eCCCCCC--ChHHHHHHHHcCCCEEEECcC
Confidence 222 2222222 157899999999998887643
No 29
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=77.53 E-value=28 Score=30.23 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeec
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQ 100 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 100 (265)
..++.+.. ..+-+.|.++|+++|.+-.+..|..-....+.++.+..+.+...++..++. .....++.+.+.+ ++.+.
T Consensus 21 ~~~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~ 97 (287)
T PRK05692 21 RFIPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVA 97 (287)
T ss_pred CCcCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEE
Confidence 45666654 447777999999999997555553221222235555555544445555554 4667777777652 22232
Q ss_pred cccCcc--------ccch------hhhHHHHHHHhCCeeeeccc
Q 024605 101 LEWSLW--------SRDV------EAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 101 ~~~~~~--------~~~~------~~~l~~~~~~~gi~v~a~sp 130 (265)
+-++.- .... -...+++++++|+.+.++-.
T Consensus 98 i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 98 VFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 222221 1111 14689999999998765433
No 30
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=76.70 E-value=16 Score=28.11 Aligned_cols=60 Identities=7% Similarity=0.187 Sum_probs=44.2
Q ss_pred cEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcC--CCcccEEEeeccCCCCCHHHHHHHHHHHHHc
Q 024605 4 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTKIPIEVTIGELKKLVEE 71 (265)
Q Consensus 4 ~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg--~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~ 71 (265)
-+.|+-|+|.. ..+..|++.+.++++.+. ....|++++..........++...|..+.++
T Consensus 49 G~sVSKKvg~A--------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 49 GITVSKKFGKA--------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred EEEEecccccc--------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 35666676652 468889999999988763 3568999999988776777777777666654
No 31
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.30 E-value=7.9 Score=32.01 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 102 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 102 (265)
+.+.++. +..+|.|++=+.+...-....+.+ ..+.+.... .+.+..+||. +.+++.+.++++...++++|++
T Consensus 12 ~~eda~~-----~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 84 (210)
T PRK01222 12 TPEDAEA-----AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLH 84 (210)
T ss_pred cHHHHHH-----HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 4555544 345899999987533211122233 222222222 3568999997 5788999999998999999997
Q ss_pred cC
Q 024605 103 WS 104 (265)
Q Consensus 103 ~~ 104 (265)
-+
T Consensus 85 g~ 86 (210)
T PRK01222 85 GD 86 (210)
T ss_pred CC
Confidence 64
No 32
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.99 E-value=34 Score=29.05 Aligned_cols=65 Identities=9% Similarity=-0.064 Sum_probs=39.8
Q ss_pred HHHHHcCcccEEec-cCCcHHHHHHHhccCCceee--ccccCccccchhhhHHHHHHHhCCeeeecccc
Q 024605 66 KKLVEEGKIKYIGL-SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 66 e~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
.+..++|+. .+|+ .+.....+.+++....||++ =.++.+++...-..++..++..|+..+++-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 344445764 4554 33333445555555445544 45788888755567888888888888876654
No 33
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=74.38 E-value=43 Score=28.86 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=40.5
Q ss_pred HHHHHHHcCcccEEec-cCCcHHHHHHHhccCCceee--ccccCccccchhhhHHHHHHHhCCeeeeccc
Q 024605 64 ELKKLVEEGKIKYIGL-SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 64 ~le~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
.|.+..++|+. .+|+ .......+.+++....||++ =.++++++......++..++..|+..+++-|
T Consensus 8 ~lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 8 PFKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 34555556775 3443 33333444455555445555 5588888876556788888888888777655
No 34
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=73.74 E-value=46 Score=28.20 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=36.3
Q ss_pred hhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCC
Q 024605 112 AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCT 183 (265)
Q Consensus 112 ~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s 183 (265)
+..+++|+..|...+...|...|... -....++...+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT--------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC--------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46889999999998877664333110 01234566777888999999998873
No 35
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=73.68 E-value=51 Score=27.31 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=61.0
Q ss_pred ccEEEeeccCCCCCHHHHHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHh
Q 024605 44 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCREL 121 (265)
Q Consensus 44 iDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~ 121 (265)
.++.++..|-.... ++.+.++++...+. ..+-|.++...+..++....++++|+.-+.+.. .....+..+|+.+
T Consensus 120 ~~i~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPDD----LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCccC----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 46667776654432 56677777777664 445556777788778887888999987766532 1135788999999
Q ss_pred CCeeeeccccccc
Q 024605 122 GIGIVAYGPLGQG 134 (265)
Q Consensus 122 gi~v~a~spl~~G 134 (265)
|+.+...+.+.++
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776554
No 36
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=70.01 E-value=68 Score=27.23 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcC-cccEEeccCCcHHHHHHHhccCCceee
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVHPITAV 99 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~ 99 (265)
..++.+...+ +-+.|.++|+++|.+-+ |.. -+.-++.++.+.+.+ .++..+.+....+.++.+.+. .++.+
T Consensus 15 ~~~~~~~k~~-i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i 86 (259)
T cd07939 15 VAFSREEKLA-IARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAV 86 (259)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEE
Confidence 4566776555 56669999999999963 221 122356667777643 366777776667777777664 23344
Q ss_pred ccccCcccc--------c------hhhhHHHHHHHhCCeee
Q 024605 100 QLEWSLWSR--------D------VEAEIVPTCRELGIGIV 126 (265)
Q Consensus 100 q~~~~~~~~--------~------~~~~l~~~~~~~gi~v~ 126 (265)
.+.++.-+. . .-...+++|++.|+.|.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 333222111 0 01367889999998654
No 37
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=69.48 E-value=85 Score=28.18 Aligned_cols=102 Identities=10% Similarity=0.005 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC---CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCce
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI---PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPIT 97 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~---~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 97 (265)
..++.+. +..+-+.|.++|+++|++-..-+|..-. +.+++.+.+. +....++.++. .....++.+++... +
T Consensus 63 ~~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~ 136 (347)
T PLN02746 63 NIVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-K 136 (347)
T ss_pred CCCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-C
Confidence 3455554 5557777999999999987554543211 2234555553 32335555553 46777888777632 2
Q ss_pred eeccccCc--c------ccchh------hhHHHHHHHhCCeeeec
Q 024605 98 AVQLEWSL--W------SRDVE------AEIVPTCRELGIGIVAY 128 (265)
Q Consensus 98 ~~q~~~~~--~------~~~~~------~~l~~~~~~~gi~v~a~ 128 (265)
.+.+-++. . +...+ .+++++++++|+.|.++
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 22222111 1 11111 47899999999988644
No 38
>smart00642 Aamy Alpha-amylase domain.
Probab=69.38 E-value=9.3 Score=30.30 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=18.7
Q ss_pred hhhHHHHHHHhCCeeeecccccc
Q 024605 111 EAEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 111 ~~~l~~~~~~~gi~v~a~spl~~ 133 (265)
-+.+++.|+++||.|+.=-++..
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
Confidence 37899999999999987655543
No 39
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.45 E-value=68 Score=27.20 Aligned_cols=64 Identities=16% Similarity=0.003 Sum_probs=35.1
Q ss_pred HHHHHHcCcccEEec--cCCcHHHHHHHhccCCceee--ccccCccccchhhhHHHHHHHhCCeeeeccc
Q 024605 65 LKKLVEEGKIKYIGL--SEACAATIRRAHAVHPITAV--QLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 65 le~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
|.+..++|+. .+|+ ...++ .+.+.+....+|++ =.++++++.+....++..|+..|+.++++-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p-~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADP-YAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCc-HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3444556875 3444 22333 34444444435444 4578887654334577777777777776543
No 40
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=67.27 E-value=42 Score=28.70 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHhHcC--------------------------CCcccEEEeeccCCCCCH---HHHHHHHHHHHHcCc
Q 024605 23 GDPAYVRACCEASLKRLD--------------------------IDCIDLYYQHRVDTKIPI---EVTIGELKKLVEEGK 73 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg--------------------------~dyiDl~~lH~~~~~~~~---~~~~~~le~l~~~G~ 73 (265)
.+++. ++.++++|+++| ...-|+++|..|....+. .++++-|.+++++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 34454 688889999888 456799999999776654 478999999999987
Q ss_pred ccEEeccCCcHHHHHHHhc
Q 024605 74 IKYIGLSEACAATIRRAHA 92 (265)
Q Consensus 74 ir~iGvS~~~~~~l~~~~~ 92 (265)
.|=+.+|+...+....+
T Consensus 191 --tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 --TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred --EEEEEeCCcHHhHhhCC
Confidence 56677787776655443
No 41
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=67.26 E-value=40 Score=30.25 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=61.3
Q ss_pred ccEEEeeccCCCCCHHHHHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCccc-cchhhhHHHHHHHh
Q 024605 44 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEIVPTCREL 121 (265)
Q Consensus 44 iDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~ 121 (265)
++++++..|-... -++.+.+|++...+. ..|=|-++...+..++....++++|+...... -....++.+.|+.+
T Consensus 189 ~~l~~iEeP~~~~----d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~ 264 (361)
T cd03322 189 YRLFWMEDPTPAE----NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLY 264 (361)
T ss_pred cCCCEEECCCCcc----cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 3566666554322 367777888887664 77788889999999998888999998876543 11236899999999
Q ss_pred CCeeeecccc
Q 024605 122 GIGIVAYGPL 131 (265)
Q Consensus 122 gi~v~a~spl 131 (265)
|+.+..++..
T Consensus 265 gi~~~~h~~~ 274 (361)
T cd03322 265 GVRTGWHGPT 274 (361)
T ss_pred CCeeeccCCC
Confidence 9999876543
No 42
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.01 E-value=24 Score=30.90 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCccc-cchhhhHHHHHHHhCCeeeeccccccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
++.+.++++...|. ..|=+-++.+.++.+++....+++|+.-..+- -.....+..+|+++|+.++..+-+.++
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 55666777776665 44555678888888888888888888766543 112367899999999999887555443
No 43
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=65.90 E-value=27 Score=29.11 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHcCcccEEec----cCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeeeccccc
Q 024605 57 PIEVTIGELKKLVEEGKIKYIGL----SEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 132 (265)
Q Consensus 57 ~~~~~~~~le~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 132 (265)
..+++.++|+.++ +..|.. |.+-...++.+++...+. .|.|+-.....+++...-+.|..++.-+.-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~----~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK----VYAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE----EeecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 3456777777776 444443 334455566666654443 3567665556788888999998888877777
Q ss_pred cccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHH
Q 024605 133 QGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPA 185 (265)
Q Consensus 133 ~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 185 (265)
.|+-. . +.- -.+ ..+.++.+..+++++|+.++
T Consensus 146 ~gL~~---~--------~lG---r~i-------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDE---S--------WLG---RRI-------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCCh---H--------HhC---Ccc-------CHHHHHHHHHHHHhcCCCcc
Confidence 77521 0 000 001 12346688888999998663
No 44
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=65.64 E-value=1.1e+02 Score=28.01 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeec
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQ 100 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 100 (265)
.+++++.+.+.+++..+. | ||.+-+|.-- ..+.++.+++.|+ ..|+-+-.-.-+..++....
T Consensus 135 ~~mt~d~~~~~ie~qa~d-G---VDfmTiH~Gi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~----- 196 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAKD-G---VDFMTIHAGV-------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH----- 196 (423)
T ss_pred hhCCHHHHHHHHHHHHHh-C---CCEEEEccch-------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC-----
Confidence 357788888888888775 4 5778889742 4688889999885 46665554444444433221
Q ss_pred cccCccccchhhhHHHHHHHhCCeee
Q 024605 101 LEWSLWSRDVEAEIVPTCRELGIGIV 126 (265)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~gi~v~ 126 (265)
.=|++...+ +.+++.|+++++.+-
T Consensus 197 -~ENPlye~f-D~lLeI~~~yDVtlS 220 (423)
T TIGR00190 197 -KENPLYKNF-DYILEIAKEYDVTLS 220 (423)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeeee
Confidence 224544443 578999999998873
No 45
>PLN02363 phosphoribosylanthranilate isomerase
Probab=65.53 E-value=33 Score=29.35 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 102 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 102 (265)
+.+.++.+ .++|.||+=+++...-......+ ..+.+-+......++.+||- +.+++.+.++++...++++|++
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555444 35899999997543211112333 33333333333246789996 7888999999998999999997
Q ss_pred cC
Q 024605 103 WS 104 (265)
Q Consensus 103 ~~ 104 (265)
-.
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 54
No 46
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.38 E-value=60 Score=27.62 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCC-----CCCHHHHHHHHHHHHHc-CcccEEecc---CCcHHHHHHHh
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEE-GKIKYIGLS---EACAATIRRAH 91 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~-----~~~~~~~~~~le~l~~~-G~ir~iGvS---~~~~~~l~~~~ 91 (265)
..++.+...+ +-+.|.++|+++|.+-+...... .......++.++.+++. +.++...+. ......++.+.
T Consensus 17 ~~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 17 HQFTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred eecCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 3566776555 56669999999999986532110 01112245566666443 346666554 22345566665
Q ss_pred ccCCceeeccccCccccchhhhHHHHHHHhCCeeeec
Q 024605 92 AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 92 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 128 (265)
+. .++.+.+..+.-+...-.+.+++++++|+.+...
T Consensus 96 ~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 96 DL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred Hc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 53 4555555444433222367899999999876553
No 47
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=64.79 E-value=51 Score=30.27 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=50.5
Q ss_pred HHHHHHHHHHc------CcccEEeccCCcHHHHHHHhccCCceeeccccCccccc-hhhhHHHHHHHhCCeeeecccc
Q 024605 61 TIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 61 ~~~~le~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl 131 (265)
-++.+.++++. +.=-..+=|.++.+.+.+++...-.+++|+..+-+-.- ...++.++|+.+||.+...+..
T Consensus 280 ~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 280 QIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 45666666655 33344555667788888888888888988877764311 1368999999999999987655
No 48
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=61.79 E-value=35 Score=31.82 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 102 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 102 (265)
+.+.++.+ ..+|.|++=+.+...-......+.+ ..+.+.. + ++.+||- |.+++.+.++++...++++|++
T Consensus 266 ~~eda~~a-----~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l--~-v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH 336 (454)
T PRK09427 266 RPQDAKAA-----YDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAA--P-LRYVGVFRNADIEDIVDIAKQLSLAAVQLH 336 (454)
T ss_pred CHHHHHHH-----HhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhC--C-CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC
Confidence 45555444 3479999988753321112233322 2222222 2 8899997 6788899999988999999997
Q ss_pred cCc
Q 024605 103 WSL 105 (265)
Q Consensus 103 ~~~ 105 (265)
-+-
T Consensus 337 G~e 339 (454)
T PRK09427 337 GDE 339 (454)
T ss_pred CCC
Confidence 754
No 49
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=61.75 E-value=28 Score=30.45 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCCC------CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcee
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITA 98 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~------~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 98 (265)
.+.+++.+.+-+++.|+|. ++.+.....+. .....+++|++..+++.-. +--|. ......+. ....+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~--vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~~aS~--~YA~AAl~--~g~~f 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDR--VVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-ISASM--LYAYAALE--AGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SC--EEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-HHHHH--HHHHHHHH--TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCc--EEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-CChHH--HHHHHHHH--CCCCe
Confidence 4667888999999999884 34444333332 2235788888888876643 22211 11122222 22222
Q ss_pred e-ccccCccccchhhhHHHHHHHhCCeeeec---cccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHH
Q 024605 99 V-QLEWSLWSRDVEAEIVPTCRELGIGIVAY---GPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVN 174 (265)
Q Consensus 99 ~-q~~~~~~~~~~~~~l~~~~~~~gi~v~a~---spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (265)
+ =++-+..+ ...+.+.++++|+.+..- ++++.+ ..-.+-++.
T Consensus 204 vN~tP~~~a~---~P~l~ela~~~gvpi~GdD~KT~lAAp-------------------------------lvlDLirl~ 249 (295)
T PF07994_consen 204 VNGTPSNIAD---DPALVELAEEKGVPIAGDDGKTPLAAP-------------------------------LVLDLIRLA 249 (295)
T ss_dssp EE-SSSTTTT---SHHHHHHHHHHTEEEEESSBS-HHHHH-------------------------------HHHHHHHHH
T ss_pred EeccCccccC---CHHHHHHHHHcCCCeecchHhhhhhhH-------------------------------HHHHHHHHH
Confidence 2 22222221 247999999999986652 122222 333455789
Q ss_pred HHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHH
Q 024605 175 EIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQL 211 (265)
Q Consensus 175 ~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l 211 (265)
++|.+.|+.-.+-.+.|.+-+|. +=.|......+
T Consensus 250 ~la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 250 KLALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 99999999878888999998885 23455544444
No 50
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=61.53 E-value=69 Score=29.24 Aligned_cols=70 Identities=7% Similarity=-0.039 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCccc-cchhhhHHHHHHHhCCeeeecccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
++.+.+|++...|. ..|=|.++...++.+++..-++++|+...-.. -.....+.+.|+.+|+.+..++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57777888876664 77777889999999999888999998766543 112368899999999999886554
No 51
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=61.30 E-value=72 Score=28.91 Aligned_cols=86 Identities=10% Similarity=0.161 Sum_probs=57.2
Q ss_pred EEeeccCCC-----------CCHHHHHHHHHHHHHcCcccEEec-----c--CCcHHHHHHHhcc---C------Cceee
Q 024605 47 YYQHRVDTK-----------IPIEVTIGELKKLVEEGKIKYIGL-----S--EACAATIRRAHAV---H------PITAV 99 (265)
Q Consensus 47 ~~lH~~~~~-----------~~~~~~~~~le~l~~~G~ir~iGv-----S--~~~~~~l~~~~~~---~------~~~~~ 99 (265)
+-||.|+.+ .+++++++++.+..+... |.|-+ . |.+.++..++.+. . +.-++
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 568888642 357788998888765432 23333 2 5666666555443 4 56899
Q ss_pred ccccCccccc----hh----hhHHHHHHHhCCeeeecccccc
Q 024605 100 QLEWSLWSRD----VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 100 q~~~~~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
.|+||+.... +. ....+.+.++||.+..+...+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999996432 11 3567778899999999887765
No 52
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=60.86 E-value=35 Score=28.08 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEee-ccCCCC-----CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceee
Q 024605 26 AYVRACCEASLKRLDIDCIDLYYQH-RVDTKI-----PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAV 99 (265)
Q Consensus 26 ~~i~~~~~~SL~~Lg~dyiDl~~lH-~~~~~~-----~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 99 (265)
+...+...+. ..-|.|+||+=--- +|.... .++.+...++.++++.-=--+.+-++.++.++++++. ..+.+
T Consensus 19 ~~a~~~a~~~-~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~i 96 (210)
T PF00809_consen 19 DEAVKRAREQ-VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADII 96 (210)
T ss_dssp HHHHHHHHHH-HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEE
T ss_pred HHHHHHHHHH-HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceE
Confidence 3333443333 34499999996532 222211 1234566666666511122577778899999999887 33332
Q ss_pred ccccCccccchhhhHHHHHHHhCCeeeecccc
Q 024605 100 QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 100 q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
--..+. .. ..++++.++++|..++.+..-
T Consensus 97 nd~~~~-~~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 97 NDISGF-ED--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EETTTT-SS--STTHHHHHHHHTSEEEEESES
T ss_pred Eecccc-cc--cchhhhhhhcCCCEEEEEecc
Confidence 211221 11 458999999999999987665
No 53
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=58.16 E-value=1.2e+02 Score=25.79 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeeccccccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
++.+.++++.-.+. ..|=+-++...+.++++...++++|+.-+.... .....+...|+.+|+.+...+.+.++
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 45666676665554 445556777888888887888888887665442 22368899999999999887665444
No 54
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.06 E-value=1.5e+02 Score=26.92 Aligned_cols=86 Identities=17% Similarity=0.052 Sum_probs=59.5
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHc------CcccEEeccCCcHHHHHHHhccCCceeeccccCccccc-hhhhHHHHH
Q 024605 46 LYYQHRVDTKIPIEVTIGELKKLVEE------GKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-VEAEIVPTC 118 (265)
Q Consensus 46 l~~lH~~~~~~~~~~~~~~le~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~l~~~~ 118 (265)
++++..|-+....++-++.+.++++. +.=-..|-|.++...+.++++..-.+++|+..+-.-.- ....+.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 35666665443322346667777766 33355666778889999998888889999887764321 136889999
Q ss_pred HHhCCeeeecccc
Q 024605 119 RELGIGIVAYGPL 131 (265)
Q Consensus 119 ~~~gi~v~a~spl 131 (265)
+.+|+.++..+..
T Consensus 309 ~a~Gi~~~~h~~~ 321 (369)
T cd03314 309 KEHGVGAYLGGSC 321 (369)
T ss_pred HHcCCcEEEeCCC
Confidence 9999999986543
No 55
>PRK14017 galactonate dehydratase; Provisional
Probab=57.75 E-value=70 Score=28.93 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl 131 (265)
++.+.++++...+. ..|=|.++...+..+++..-++++|+..+.+-. .....+.+.|+.+|+.+..++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56777788776664 667778889999999888888999988776531 22368999999999998887543
No 56
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=57.48 E-value=41 Score=29.76 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=52.9
Q ss_pred hHcCCCcccEEEeec-cCC-CCCHHHHHHHHHHHHHcCcccE-EeccC---CcHHHHHHHhcc---CCceeeccccCccc
Q 024605 37 KRLDIDCIDLYYQHR-VDT-KIPIEVTIGELKKLVEEGKIKY-IGLSE---ACAATIRRAHAV---HPITAVQLEWSLWS 107 (265)
Q Consensus 37 ~~Lg~dyiDl~~lH~-~~~-~~~~~~~~~~le~l~~~G~ir~-iGvS~---~~~~~l~~~~~~---~~~~~~q~~~~~~~ 107 (265)
+.+|.|+|||-+.-. |+. +...++.....+...+.=.+=- |..|. -+++.++++++. .++-++ +.-.
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLIn----Sat~ 161 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLG----SAEE 161 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEE----ECCH
Confidence 478999999886443 221 2234455555555544333322 55553 267777777665 223222 2211
Q ss_pred cchhhhHHHHHHHhCCeeeecccc
Q 024605 108 RDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 108 ~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
.+ -..+.+.|+++|..|++.+|.
T Consensus 162 en-~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 162 DN-YKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HH-HHHHHHHHHHhCCeEEEEcHH
Confidence 22 368999999999999998755
No 57
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=57.37 E-value=54 Score=29.18 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCccc-cchhhhHHHHHHHhCCeeeecc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~s 129 (265)
++.+..+++.-.|. ..|=|.++.+.+.++++...++++|+.....- -.....+...|+.+|+.++..+
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 55666677765554 44455678888888888888889888766543 1123688999999999987765
No 58
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=57.19 E-value=48 Score=29.69 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecccccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~ 133 (265)
++.+.++++...|. ..|=|-++...+..++....++++|+....+-. ....++..+|+.+|+.++..+-+.+
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 56677777766554 666666788888888887778888876555421 1136788999999999876544433
No 59
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=56.57 E-value=1.5e+02 Score=26.64 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCceee
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAV 99 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 99 (265)
..++.+...+ +-+.|.++|+++|.+- .|.. -+.-++.++.+.+.+. .+..+++....+.++.+.+.. ++.+
T Consensus 18 ~~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i 89 (365)
T TIGR02660 18 VAFTAAEKLA-IARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAV 89 (365)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEE
Confidence 3567776544 6667999999999985 2322 1333677777777643 677777766777887776652 2333
Q ss_pred ccccCccc--------cchh------hhHHHHHHHhCCeee
Q 024605 100 QLEWSLWS--------RDVE------AEIVPTCRELGIGIV 126 (265)
Q Consensus 100 q~~~~~~~--------~~~~------~~l~~~~~~~gi~v~ 126 (265)
.+-.+.-+ ...+ .+.+++++++|+.|.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33322211 1111 367899999998754
No 60
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=56.48 E-value=61 Score=31.51 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLE 102 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 102 (265)
+.+.++.+ ..+|.||+=+++...-......+.+...+.+......++.+||- |.+++.+.++.+...++++|++
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555544 45899999998655322223344413333333333357789996 7888999999988999999997
Q ss_pred cCc
Q 024605 103 WSL 105 (265)
Q Consensus 103 ~~~ 105 (265)
-..
T Consensus 87 G~e 89 (610)
T PRK13803 87 GAE 89 (610)
T ss_pred CCC
Confidence 653
No 61
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.17 E-value=94 Score=27.73 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCccc-cchhhhHHHHHHHhCCeeeecc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~s 129 (265)
++.+.+|++..-+. +.|=|.++...+..++...-++++|+....+- -.....+.+.|+++|+.+...+
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 67777787775553 66667788888888888777889988765543 1123689999999999988654
No 62
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=55.76 E-value=66 Score=32.75 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHhHcC--------------------------CCcccEEEeeccCCCCC---HHHHHHHHHHHHHcC
Q 024605 22 RGDPAYVRACCEASLKRLD--------------------------IDCIDLYYQHRVDTKIP---IEVTIGELKKLVEEG 72 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg--------------------------~dyiDl~~lH~~~~~~~---~~~~~~~le~l~~~G 72 (265)
...+.++.+.++..|+.+| +....+++|..|....+ ...+|....++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4456678888999988877 34567888888876554 348999999999999
Q ss_pred cccEEeccCCcHHHHHHHhccC
Q 024605 73 KIKYIGLSEACAATIRRAHAVH 94 (265)
Q Consensus 73 ~ir~iGvS~~~~~~l~~~~~~~ 94 (265)
+ ++=+.+|+.++.+.++...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhhh
Confidence 9 9999999999998887763
No 63
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=55.39 E-value=1.7e+02 Score=26.91 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeec
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQ 100 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 100 (265)
.+++++.+.+.+++..+. | ||.+-+|.-- ..+.++.+++.|+ ..|+-+-.-.-+..++....
T Consensus 138 ~~mt~d~~~~~ie~qa~~-G---VDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~----- 199 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAKD-G---VDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN----- 199 (431)
T ss_pred hhCCHHHHHHHHHHHHHh-C---CCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC-----
Confidence 367888888888888875 4 5778899743 4688889999885 46665555444444443211
Q ss_pred cccCccccchhhhHHHHHHHhCCeeeecccccccc
Q 024605 101 LEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGF 135 (265)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 135 (265)
.=|++...+ +.+++.|++++|.+ +|+.|+
T Consensus 200 -~ENPlye~f-D~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 200 -KENPLYEHF-DYLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 234555543 58999999999987 455554
No 64
>PRK06424 transcription factor; Provisional
Probab=55.20 E-value=49 Score=25.62 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=39.3
Q ss_pred hHHHHHHHhCCeeeec---ccccc--ccccCCCC-cccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHH
Q 024605 113 EIVPTCRELGIGIVAY---GPLGQ--GFLSSGPK-LVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQ 186 (265)
Q Consensus 113 ~l~~~~~~~gi~v~a~---spl~~--G~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q 186 (265)
.+=+-|.+.|..|..+ +|... ...+.+.. ..........++. .+......+......+.++.+-++.|+|..+
T Consensus 24 ~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~e 102 (144)
T PRK06424 24 NVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMSQAD 102 (144)
T ss_pred ehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4667799999999998 55533 11110100 0000000000000 1111111222334456677778888999999
Q ss_pred HHHHHHH
Q 024605 187 LALAWVH 193 (265)
Q Consensus 187 ~al~~~l 193 (265)
+|-+--.
T Consensus 103 LA~~iGv 109 (144)
T PRK06424 103 LAAKIFE 109 (144)
T ss_pred HHHHhCC
Confidence 8855443
No 65
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=55.15 E-value=41 Score=30.25 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=54.0
Q ss_pred EEeeccCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEecc--CCcHHHHHHH---hccCCceeeccccCcc
Q 024605 47 YYQHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLS--EACAATIRRA---HAVHPITAVQLEWSLW 106 (265)
Q Consensus 47 ~~lH~~~~~-----------~~~~~~~~~le~l~~-~G~---ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~~~~ 106 (265)
+-||.++++ .+++++++++.+..+ .|+ |+++=+. |.+.+.+.++ +...++.++.++||++
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668988632 236788888876654 442 2444333 3444555444 4444567888999986
Q ss_pred ccc----hh----hhHHHHHHHhCCeeeecccccc
Q 024605 107 SRD----VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 107 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
... +. ..+.++..++|+.|..+...+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 531 11 2456677788999999877754
No 66
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=54.99 E-value=1.4e+02 Score=25.63 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC------CHHHHHHHHHHHHHcCcccEEeccCCc---HHHHHHHh
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI------PIEVTIGELKKLVEEGKIKYIGLSEAC---AATIRRAH 91 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~------~~~~~~~~le~l~~~G~ir~iGvS~~~---~~~l~~~~ 91 (265)
..|+.+...+ +-+.|.++|+|+|++-+........ ...+.++.+..+.+ +..+..+++... .+.+..+.
T Consensus 15 ~~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 4677776555 6667999999999998765432110 11344555544442 346666666443 45555554
Q ss_pred ccCCceeeccccCccccchhhhHHHHHHHhCCeeee
Q 024605 92 AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 92 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
+ ..++.+.+.+..-.-..-.+.+++++++|+.|..
T Consensus 93 ~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 93 G-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred c-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 3 3345555544333322236789999999986654
No 67
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=54.99 E-value=24 Score=26.87 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=21.2
Q ss_pred cchhhhHHHHHHHhCCeeeeccccc
Q 024605 108 RDVEAEIVPTCRELGIGIVAYGPLG 132 (265)
Q Consensus 108 ~~~~~~l~~~~~~~gi~v~a~spl~ 132 (265)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445799999999999999997775
No 68
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=54.28 E-value=70 Score=26.68 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeeccCCCCCH---HHHHHHHHHHHHcC
Q 024605 22 RGDPAYVRACCEASLKRLDI--------------------------DCIDLYYQHRVDTKIPI---EVTIGELKKLVEEG 72 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~--------------------------dyiDl~~lH~~~~~~~~---~~~~~~le~l~~~G 72 (265)
+.+...+.+.+++--++||+ ...+++.+..|....++ .++-+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 45566677777777777773 23455666555544433 47889999999999
Q ss_pred cccEEeccCCcHHHHHHHhcc
Q 024605 73 KIKYIGLSEACAATIRRAHAV 93 (265)
Q Consensus 73 ~ir~iGvS~~~~~~l~~~~~~ 93 (265)
+ .+=+|+|..+.++++++.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 8 688999999999888764
No 69
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.55 E-value=60 Score=27.48 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=27.7
Q ss_pred cEEEeeccCCC--------------CCHHHHHHHHHHHHHcCcccEEeccCCcHHH
Q 024605 45 DLYYQHRVDTK--------------IPIEVTIGELKKLVEEGKIKYIGLSEACAAT 86 (265)
Q Consensus 45 Dl~~lH~~~~~--------------~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~ 86 (265)
+-+++|-|-.. ...+++.+-+++++.. ---++|+.||.-..
T Consensus 78 ~evlih~PmeP~~~~~~e~gtL~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~ 132 (250)
T COG2861 78 HEVLIHMPMEPFSYPKIEPGTLRPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGSR 132 (250)
T ss_pred CEEEEeccCCcccCCCCCCCCcccCCCHHHHHHHHHHHHhh-Cccceeehhhhhhh
Confidence 45688988321 2245788888877765 45789999986443
No 70
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=52.39 E-value=1.1e+02 Score=27.97 Aligned_cols=70 Identities=7% Similarity=0.134 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl 131 (265)
++.+.++++...+- ..|-|.++...+..+++..-++++|......-. ....++...|+.+|+.+..++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 56777777776654 666667788888888888888999887765431 11368999999999999887654
No 71
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=51.34 E-value=1.6e+02 Score=26.13 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=55.0
Q ss_pred cEEEeeccCCCCCHHHHHHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCC
Q 024605 45 DLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGI 123 (265)
Q Consensus 45 Dl~~lH~~~~~~~~~~~~~~le~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi 123 (265)
++.++..|-.. ++.+.++++.-.| -+.|=|-++...+.+++.....+++|+..+.+.. -.++++.|+.+|+
T Consensus 162 ~l~~iEqP~~~------~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi 233 (327)
T PRK02901 162 PLEYVEQPCAT------VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGL 233 (327)
T ss_pred CceEEecCCCC------HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCC
Confidence 55555554321 4555566554333 3455566777778888877888888888777654 2467788999999
Q ss_pred eeeeccccccc
Q 024605 124 GIVAYGPLGQG 134 (265)
Q Consensus 124 ~v~a~spl~~G 134 (265)
.++..+.+.++
T Consensus 234 ~v~v~s~~es~ 244 (327)
T PRK02901 234 PVVVSSALDTS 244 (327)
T ss_pred cEEEeCCcccH
Confidence 99887777554
No 72
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=51.05 E-value=56 Score=29.52 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCcccEEeccCCcHHHHHHHh--ccCCceeeccccCccccchhhhHHHHHHHhCCeeeecc
Q 024605 61 TIGELKKLVEEGKIKYIGLSEACAATIRRAH--AVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 61 ~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~--~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 129 (265)
-.+++.++.+.|.+.+|-.---.--.|..+. ....+. --|.....+..+.+++.|.++||.|+.-+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA 78 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 3566677777888888765332211111111 011111 22444443335789999999999998863
No 73
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=50.36 E-value=1.6e+02 Score=25.05 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCceee
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--HPITAV 99 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~ 99 (265)
..+.+.+.+...+.++ -|-|+||+=. .|......++....+..+++.-. .-|.+-++.++.++++++. +..-++
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 3466777777777665 4999999865 23322222333333333333212 2477778899999999886 333233
Q ss_pred ccccCcccc-chhhhHHHHHHHhCCeeeeccccccc
Q 024605 100 QLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 100 q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
- .+.... .....+++.+.+.|..++.+..-..|
T Consensus 98 s--Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 S--INLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred e--CCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 2 232221 11357889999999998887654333
No 74
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=50.11 E-value=1.3e+02 Score=25.25 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=42.5
Q ss_pred ccCccccc---hhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHH
Q 024605 102 EWSLWSRD---VEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAM 178 (265)
Q Consensus 102 ~~~~~~~~---~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 178 (265)
+||.++.. ..+++.+|++.-|-.-+...|+..|... +. ....+.....+.+++.|.+
T Consensus 73 pFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~-~~-------------------~vr~~~lv~AlkaLkpil~ 132 (272)
T COG4130 73 PFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWP-GT-------------------AVRREDLVEALKALKPILD 132 (272)
T ss_pred cccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCC-Cc-------------------ccchHHHHHHHHHhhHHHH
Confidence 57776643 2368999999999999999999887533 11 0112334556777888888
Q ss_pred HhCCC
Q 024605 179 RKGCT 183 (265)
Q Consensus 179 ~~~~s 183 (265)
++|++
T Consensus 133 ~~gi~ 137 (272)
T COG4130 133 EYGIT 137 (272)
T ss_pred HhCcc
Confidence 88773
No 75
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=49.99 E-value=26 Score=25.32 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=40.4
Q ss_pred cCCcHHHHHHHhccCCceeeccccCccc-cchhhhHHHHHHHhCCeeeeccccccc
Q 024605 80 SEACAATIRRAHAVHPITAVQLEWSLWS-RDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 80 S~~~~~~l~~~~~~~~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
|.++...++++++...++++|+.....- -.....+.+.|+.+|+.+...+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 5677888899999888899988765542 11236899999999999999886 443
No 76
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=49.64 E-value=1.3e+02 Score=23.73 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=53.8
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccC--CceeeccccCccccc-----hhhhHHHHHH
Q 024605 47 YYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVH--PITAVQLEWSLWSRD-----VEAEIVPTCR 119 (265)
Q Consensus 47 ~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~~~~~~~-----~~~~l~~~~~ 119 (265)
+|+..|..+ ..+++++..-+=-+++-|+++-|.+-+-+....+++.. .+.++-+.|+.-... .+.++-+..+
T Consensus 2 ~yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHH
Confidence 344455433 34456655555556677889988876666655555542 244555666654332 3468889999
Q ss_pred HhCCeeeeccccccc
Q 024605 120 ELGIGIVAYGPLGQG 134 (265)
Q Consensus 120 ~~gi~v~a~spl~~G 134 (265)
++|..|..-|-..+|
T Consensus 81 erGa~v~~~sHalSg 95 (186)
T COG1751 81 ERGAKVLTQSHALSG 95 (186)
T ss_pred HcCceeeeehhhhhc
Confidence 999998886644444
No 77
>PRK13796 GTPase YqeH; Provisional
Probab=49.61 E-value=1.6e+02 Score=26.43 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=55.9
Q ss_pred CcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCC
Q 024605 3 ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA 82 (265)
Q Consensus 3 ~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~ 82 (265)
.-++|.||.--.. .....+.+.+-+....+.+|....|++++.. .....++++.+.+.+..+.+.+--+|.+|.
T Consensus 98 pviLViNK~DLl~-----~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA-k~g~gI~eL~~~I~~~~~~~~v~vvG~~Nv 171 (365)
T PRK13796 98 PVLLVGNKADLLP-----KSVKKNKVKNWLRQEAKELGLRPVDVVLISA-QKGHGIDELLEAIEKYREGRDVYVVGVTNV 171 (365)
T ss_pred CEEEEEEchhhCC-----CccCHHHHHHHHHHHHHhcCCCcCcEEEEEC-CCCCCHHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 4477889976432 1224556666666667778876567777754 345567888898888877888999999998
Q ss_pred cHHHHH
Q 024605 83 CAATIR 88 (265)
Q Consensus 83 ~~~~l~ 88 (265)
.-..+-
T Consensus 172 GKSTLi 177 (365)
T PRK13796 172 GKSTLI 177 (365)
T ss_pred cHHHHH
Confidence 765543
No 78
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=49.24 E-value=1.8e+02 Score=26.15 Aligned_cols=79 Identities=10% Similarity=0.172 Sum_probs=54.6
Q ss_pred CcEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCC
Q 024605 3 ERVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA 82 (265)
Q Consensus 3 ~~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~ 82 (265)
.-++|.||+-... .....+.+.+-+.+.++.+|....|++++ +......++++++.+.++++.+.+--+|.+|-
T Consensus 92 piilV~NK~DLl~-----k~~~~~~~~~~l~~~~k~~g~~~~~i~~v-SAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nv 165 (360)
T TIGR03597 92 PVLLVGNKIDLLP-----KSVNLSKIKEWMKKRAKELGLKPVDIILV-SAKKGNGIDELLDKIKKARNKKDVYVVGVTNV 165 (360)
T ss_pred CEEEEEEchhhCC-----CCCCHHHHHHHHHHHHHHcCCCcCcEEEe-cCCCCCCHHHHHHHHHHHhCCCeEEEECCCCC
Confidence 3467889976432 12345666666666777788654566665 44555678889999988877778999999997
Q ss_pred cHHHH
Q 024605 83 CAATI 87 (265)
Q Consensus 83 ~~~~l 87 (265)
.-..+
T Consensus 166 GKStl 170 (360)
T TIGR03597 166 GKSSL 170 (360)
T ss_pred CHHHH
Confidence 65543
No 79
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.89 E-value=74 Score=28.24 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~s 129 (265)
++.+.++++...|. ..|=|.++...+..+++...++++|+..+..-. .....+...|+.+|+.+..+.
T Consensus 211 ~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 211 IEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 56777788777665 667677888899999888888899887665431 123688999999999977653
No 80
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.45 E-value=79 Score=24.49 Aligned_cols=58 Identities=22% Similarity=0.227 Sum_probs=42.6
Q ss_pred EEeccCCc--HHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeeecccccccccc
Q 024605 76 YIGLSEAC--AATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQGFLS 137 (265)
Q Consensus 76 ~iGvS~~~--~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~ 137 (265)
.+|...|+ ...+..++....|+++- ..+.+.+ .+.+..+.+.++.++.-|.+.++.++
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~---~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVIN---LGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEe---cCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHH
Confidence 45666664 45678888888888763 3334443 58888899999999999999998544
No 81
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=48.42 E-value=1.1e+02 Score=23.17 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=41.1
Q ss_pred EEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCC----CcccEEEeeccCCC-CCHHHHHHHHHHHHH
Q 024605 5 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI----DCIDLYYQHRVDTK-IPIEVTIGELKKLVE 70 (265)
Q Consensus 5 ~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~----dyiDl~~lH~~~~~-~~~~~~~~~le~l~~ 70 (265)
+.|+-|+|. ...+..|++-+.++++.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 51 ~~VSKKvG~--------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 51 FTVTKKNGN--------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEecccCc--------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 455556654 24688899999999887754 45799999988754 456677777766554
No 82
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=48.34 E-value=73 Score=28.08 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=61.6
Q ss_pred cEEEeeccCCCCCHHHHHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhC
Q 024605 45 DLYYQHRVDTKIPIEVTIGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 122 (265)
Q Consensus 45 Dl~~lH~~~~~~~~~~~~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~g 122 (265)
++.++..|-.. +-++.+.++++...+. ..|=|.++...+..++....++++|+....+.. .....+...|+.+|
T Consensus 199 ~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~g 274 (324)
T TIGR01928 199 QLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHG 274 (324)
T ss_pred CCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcC
Confidence 45555554322 3457788888776653 677788899999999988889999987765431 12368999999999
Q ss_pred Ceeeeccccccc
Q 024605 123 IGIVAYGPLGQG 134 (265)
Q Consensus 123 i~v~a~spl~~G 134 (265)
+.++..+.+.+|
T Consensus 275 i~~~~~~~~es~ 286 (324)
T TIGR01928 275 AKVWIGGMLETG 286 (324)
T ss_pred CeEEEcceEccc
Confidence 999887656544
No 83
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=48.31 E-value=1.8e+02 Score=25.49 Aligned_cols=85 Identities=8% Similarity=0.005 Sum_probs=55.3
Q ss_pred cEEEeeccCCCCCHHHHHHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhC
Q 024605 45 DLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 122 (265)
Q Consensus 45 Dl~~lH~~~~~~~~~~~~~~le~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~g 122 (265)
++.++..|-... +.+..+++.-.+ -..|=|-++...+..+++....+++++....... .....+.+.|+.+|
T Consensus 184 ~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~g 257 (307)
T TIGR01927 184 RIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLG 257 (307)
T ss_pred CceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcC
Confidence 555555544221 455555555332 3555666777888888877777888877665431 12368899999999
Q ss_pred Ceeeecccccccc
Q 024605 123 IGIVAYGPLGQGF 135 (265)
Q Consensus 123 i~v~a~spl~~G~ 135 (265)
+.++..+.+.+|.
T Consensus 258 i~~~~~~~~es~i 270 (307)
T TIGR01927 258 LQAVFSSVFESSI 270 (307)
T ss_pred CCEEEECccchHH
Confidence 9999877665553
No 84
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=47.29 E-value=1.3e+02 Score=25.38 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=52.5
Q ss_pred HHHHHhHcCCCcccEEEeeccCCCCCHH-HHHHHHHHHHHcCcccEEeccC-CcHHHHHHHhccCCceeeccccCccccc
Q 024605 32 CEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVHPITAVQLEWSLWSRD 109 (265)
Q Consensus 32 ~~~SL~~Lg~dyiDl~~lH~~~~~~~~~-~~~~~le~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 109 (265)
+-+-|..+|. |.+.+|..+.+.... --++.+.++++.-.+.-+.... .+.+.+.+++....++.+.+---+....
T Consensus 160 ~~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 3444566666 556666654322111 1245566666665666666554 4677888888776666655422222211
Q ss_pred h-hhhHHHHHHHhCCee
Q 024605 110 V-EAEIVPTCRELGIGI 125 (265)
Q Consensus 110 ~-~~~l~~~~~~~gi~v 125 (265)
. ..++.++|++.|+.|
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 1 357889999999865
No 85
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=47.12 E-value=65 Score=28.93 Aligned_cols=73 Identities=12% Similarity=0.002 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeeccccccc
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
++.+.++++...+. ..|=|-++...+..++....++++|+....... .....+...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 56677777776664 677778888888888888778888886665431 11357889999999998766444443
No 86
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.89 E-value=2.5e+02 Score=26.24 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC----CHHHHHHHHHHHHHcC-cccE---------EeccCCcHHHH
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI----PIEVTIGELKKLVEEG-KIKY---------IGLSEACAATI 87 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~----~~~~~~~~le~l~~~G-~ir~---------iGvS~~~~~~l 87 (265)
.++.+...+ +-+.|.++|++.|.+. +....+. ..++.|+.++.+++.. .++. +|.++++-+.+
T Consensus 22 ~~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 466666555 5566899999999993 1111111 1123577777777752 2332 45666544433
Q ss_pred H----HHhccCCceeeccccCccccchhhhHHHHHHHhCCeeee
Q 024605 88 R----RAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 88 ~----~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
. .+.+ ..++++.+-.++-+..--...++++++.|+.+.+
T Consensus 99 ~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3 3333 3456665554443322135688999999986644
No 87
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=46.36 E-value=1.9e+02 Score=24.68 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEe-eccCCCCCHHHHHHHHHHHHHcC-cccEEeccCCcHHHHHHHhccC---C
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQ-HRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEACAATIRRAHAVH---P 95 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~l-H~~~~~~~~~~~~~~le~l~~~G-~ir~iGvS~~~~~~l~~~~~~~---~ 95 (265)
..++.+...+ +-+.|.++|+++|.+-+. ++++ -++.++.+.+.. .++..+++......++.+.+.. +
T Consensus 15 ~~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 15 VSLTPEEKLE-IARQLDELGVDVIEAGFPAASPG-------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEeCCCCCHH-------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCC
Confidence 3566776555 555699999999998642 1221 245666666533 3777777755566666666553 2
Q ss_pred ceeeccccCcc--------ccch------hhhHHHHHHHhCCeee
Q 024605 96 ITAVQLEWSLW--------SRDV------EAEIVPTCRELGIGIV 126 (265)
Q Consensus 96 ~~~~q~~~~~~--------~~~~------~~~l~~~~~~~gi~v~ 126 (265)
++.+.+-++.- .... -.+.++++++.|+.|.
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 55555543321 1110 1367889999998755
No 88
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.09 E-value=1.7e+02 Score=24.17 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhc---cCCcee
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA---VHPITA 98 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~ 98 (265)
.++.+...+ +-+.|.++|+++|.+- .|.......+.++.+.+.... .+-.+++......++...+ ...++.
T Consensus 10 ~~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLE-IAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 456665544 5567999999999988 222222222344445444455 3444455455555544333 244444
Q ss_pred eccccCccc--------------cchhhhHHHHHHHhCCee
Q 024605 99 VQLEWSLWS--------------RDVEAEIVPTCRELGIGI 125 (265)
Q Consensus 99 ~q~~~~~~~--------------~~~~~~l~~~~~~~gi~v 125 (265)
+.+..+.-+ ...-...+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444333322 101257899999999988
No 89
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=45.97 E-value=32 Score=22.43 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 024605 172 RVNEIAMRKGCTPAQLALAWVHH 194 (265)
Q Consensus 172 ~l~~ia~~~~~s~~q~al~~~l~ 194 (265)
...+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999853
No 90
>PRK13753 dihydropteroate synthase; Provisional
Probab=44.40 E-value=2.1e+02 Score=24.81 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEee-ccCCC-CC----HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCc
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTK-IP----IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 96 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH-~~~~~-~~----~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 96 (265)
++.+.+.+..++.++ -|.|-||+=--- +|... .+ +.-+...++.+++.+. .|.|-++.++.++++++.+ .
T Consensus 22 ~~~d~a~~~a~~m~~-~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aG-a 97 (279)
T PRK13753 22 LDPAGAVTAAIEMLR-VGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRG-V 97 (279)
T ss_pred CCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcC-C
Confidence 566777777777654 488888886533 34433 12 2234578888887753 4888999999999998864 2
Q ss_pred eeeccccCccccchhhhHHHHHHHhCCeeeeccccc
Q 024605 97 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLG 132 (265)
Q Consensus 97 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 132 (265)
+++. ..+-+. ...+.+.+.+.++.++.+...+
T Consensus 98 diIN-DVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GYLN-DIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CEEE-eCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 3321 112222 3578888999999988877654
No 91
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=43.66 E-value=46 Score=27.06 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccccCc
Q 024605 35 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWSL 105 (265)
Q Consensus 35 SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~ 105 (265)
.+..+|.||+=+.+ .+..... -..+.+.++.+.-.-+.+||- +.+.+.+.+++....++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 45678999988875 3432222 224445555555555588886 4678888888888999999987664
No 92
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=43.08 E-value=64 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=21.5
Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHhcc
Q 024605 188 ALAWVHHQGDDVCPIPGTTKIEQLNENIQAL 218 (265)
Q Consensus 188 al~~~l~~~~v~~~i~G~~~~~~l~en~~~~ 218 (265)
.|.|+.+.+-....-.|+.+.+.+.+.++.+
T Consensus 139 lik~iA~~~kPiIlSTGma~~~ei~~av~~~ 169 (347)
T COG2089 139 LIKYIAKKGKPIILSTGMATIEEIEEAVAIL 169 (347)
T ss_pred HHHHHHhcCCCEEEEcccccHHHHHHHHHHH
Confidence 3566666655446667888888888888644
No 93
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=43.01 E-value=1.4e+02 Score=22.31 Aligned_cols=59 Identities=3% Similarity=-0.118 Sum_probs=41.1
Q ss_pred EEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCC---cccEEEeeccCCC-CCHHHHHHHHHHHHHc
Q 024605 5 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID---CIDLYYQHRVDTK-IPIEVTIGELKKLVEE 71 (265)
Q Consensus 5 ~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d---yiDl~~lH~~~~~-~~~~~~~~~le~l~~~ 71 (265)
+.|+-|+|.. ..+..+++-+.++++.+..+ -.|++++-.+... .+..++.+.|+.+.+.
T Consensus 52 ~~VsKKvG~A--------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 52 LVVSKAVGNA--------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred EEEeeeccch--------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 5566666652 46788888888888887653 3699999887654 4566777777666554
No 94
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.95 E-value=2.5e+02 Score=25.22 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=56.3
Q ss_pred HhHcCCCcccEEEeeccCCC-----------CCHHHHHHHHHHHHHc-Cc---ccEEecc--CCcHHHHHHHh---ccCC
Q 024605 36 LKRLDIDCIDLYYQHRVDTK-----------IPIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAH---AVHP 95 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~~-----------~~~~~~~~~le~l~~~-G~---ir~iGvS--~~~~~~l~~~~---~~~~ 95 (265)
|...+...+++ -||.++++ ..++++++++.....+ |+ |+++=+. |.+.+.+.++. ...+
T Consensus 208 L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~ 286 (354)
T PRK14460 208 LGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTK 286 (354)
T ss_pred HHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 33444434444 47777542 2466788877765443 22 3444443 45555554443 3345
Q ss_pred ceeeccccCccccc----hh----hhHHHHHHHhCCeeeecccccc
Q 024605 96 ITAVQLEWSLWSRD----VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 96 ~~~~q~~~~~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
..++-++||+.... +. ....+..+++|+.+..+...+.
T Consensus 287 ~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 287 CKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred CcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 57888899986432 11 2456677788999988777654
No 95
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=42.90 E-value=2.4e+02 Score=24.90 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=63.0
Q ss_pred HhHcCCCcccEEEeeccCC-----CCCHHHHHHHHHHHHHcCcc-cEEeccCC---cHHHHHHHhccCCce-eeccccCc
Q 024605 36 LKRLDIDCIDLYYQHRVDT-----KIPIEVTIGELKKLVEEGKI-KYIGLSEA---CAATIRRAHAVHPIT-AVQLEWSL 105 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~-----~~~~~~~~~~le~l~~~G~i-r~iGvS~~---~~~~l~~~~~~~~~~-~~q~~~~~ 105 (265)
.++.|. |++-+|-... +.+..|..+.||++.+.=++ --||=|.. +++.+.++.+...-. +.....|+
T Consensus 160 Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanl 236 (403)
T COG2069 160 VKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANL 236 (403)
T ss_pred HHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecccc
Confidence 345555 7777886643 34677899999999888777 45677764 567777766653222 22223333
Q ss_pred cccchhhhHHHHHHHhCCeeeeccccccc
Q 024605 106 WSRDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 106 ~~~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
+.. -..+.+.+.++|=.|++|+++.-.
T Consensus 237 -dlD-y~~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 237 -DLD-YERIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred -ccC-HHHHHHHHHhcCceEEEeeccChH
Confidence 332 257889999999999999998654
No 96
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=42.70 E-value=2e+02 Score=23.89 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=13.0
Q ss_pred hhHHHHHHHhCCeeeecc
Q 024605 112 AEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 112 ~~l~~~~~~~gi~v~a~s 129 (265)
..+++.|++.|+.|.+|.
T Consensus 195 ~~~v~~~~~~Gl~v~vwT 212 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYT 212 (237)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 467777777777777773
No 97
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=42.64 E-value=1.1e+02 Score=27.27 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=56.7
Q ss_pred cEEEeeccCCCCCHHHHHHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhC
Q 024605 45 DLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELG 122 (265)
Q Consensus 45 Dl~~lH~~~~~~~~~~~~~~le~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~g 122 (265)
++.++..|-.. +-++.+.++++.-.+ -..|=|.++...+..+++...++++|+....+.. .....+...|+.+|
T Consensus 204 ~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~g 279 (354)
T cd03317 204 GLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHG 279 (354)
T ss_pred CccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcC
Confidence 45555554322 235566666655432 4667777888899999888888899887665432 12368899999999
Q ss_pred Ceeeecccccc
Q 024605 123 IGIVAYGPLGQ 133 (265)
Q Consensus 123 i~v~a~spl~~ 133 (265)
+.++..+.+.+
T Consensus 280 i~~~~g~~~es 290 (354)
T cd03317 280 IPVWCGGMLES 290 (354)
T ss_pred CcEEecCcccc
Confidence 99876544433
No 98
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.59 E-value=2.2e+02 Score=24.51 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=21.9
Q ss_pred ceeeccccCccccchhhhHHHHHHHhCCe
Q 024605 96 ITAVQLEWSLWSRDVEAEIVPTCRELGIG 124 (265)
Q Consensus 96 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 124 (265)
+-+.+..||++.+.-....+..|++.|+.
T Consensus 96 Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd 124 (265)
T COG0159 96 PIVLMTYYNPIFNYGIEKFLRRAKEAGVD 124 (265)
T ss_pred CEEEEEeccHHHHhhHHHHHHHHHHcCCC
Confidence 56788889987765445677888888884
No 99
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=42.22 E-value=2.1e+02 Score=24.27 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=62.7
Q ss_pred HHHHHHHHhHcCCCcccEEEeeccCCCCCH-HHHHHHHHHHHHcCcccEEeccCC-c-------HHHHHHHhccCCceee
Q 024605 29 RACCEASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYIGLSEA-C-------AATIRRAHAVHPITAV 99 (265)
Q Consensus 29 ~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~-~~~~~~le~l~~~G~ir~iGvS~~-~-------~~~l~~~~~~~~~~~~ 99 (265)
.+.+++.|+-.| +|||++=+-|-...... +.+-+..+-+++.|---+.| -++ . .+++.+.+..-.|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 345788888888 79999999886544333 34556666677788877777 321 1 1222233344667887
Q ss_pred ccccCccccchh--hhHHHHHHHhCCeeee
Q 024605 100 QLEWSLWSRDVE--AEIVPTCRELGIGIVA 127 (265)
Q Consensus 100 q~~~~~~~~~~~--~~l~~~~~~~gi~v~a 127 (265)
.+.-..+.-..+ ..+++.++++|+.|.+
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 776555443322 4788999999888775
No 100
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=42.13 E-value=4.5e+02 Score=27.95 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCH-HHHHHHHHHHHHcCcc--cEEeccCCcHHHHHHHhcc--CCcee
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKI--KYIGLSEACAATIRRAHAV--HPITA 98 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~-~~~~~~le~l~~~G~i--r~iGvS~~~~~~l~~~~~~--~~~~~ 98 (265)
+.+.+.+...+.. .-|-+.||+-.= ....+- ++.-..+..++.+-.+ --|-+-++.++.++.+++. ++.-+
T Consensus 366 d~~~a~~~A~~qv-e~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQQV-ENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 3444444444333 559999999862 122222 3343444444443223 3466668889999999887 44333
Q ss_pred eccccCcc--ccchhhhHHHHHHHhCCeeeeccccccc
Q 024605 99 VQLEWSLW--SRDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 99 ~q~~~~~~--~~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
| ..|.. +.+. ..+++.|++.|..++.+.--..|
T Consensus 442 N--sIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 442 N--SISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred E--eCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 3 34443 2222 37999999999999998633334
No 101
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=41.51 E-value=46 Score=20.22 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhccCC
Q 024605 173 VNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQALSV 220 (265)
Q Consensus 173 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~~~ 220 (265)
|.+||+..|+|.+-+ ..+|..+. -++..+.++|.+.++.+++
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 678899999998854 45555542 5566677777777766554
No 102
>PRK08392 hypothetical protein; Provisional
Probab=40.56 E-value=1.5e+02 Score=24.32 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=43.3
Q ss_pred CCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCC--------cHHHHHHHh----ccC-CceeeccccCccc
Q 024605 41 IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEA--------CAATIRRAH----AVH-PITAVQLEWSLWS 107 (265)
Q Consensus 41 ~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~--------~~~~l~~~~----~~~-~~~~~q~~~~~~~ 107 (265)
.||+ +.-+|..........-.+.+.++.+.|.+.-+|=-.. ..+.+.+++ +.+ .+.+|- .+
T Consensus 86 ~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~~---- 159 (215)
T PRK08392 86 LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-RY---- 159 (215)
T ss_pred CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-CC----
Confidence 4666 6777843333334456677777888888777765321 112322222 222 233332 11
Q ss_pred cchhhhHHHHHHHhCCeee
Q 024605 108 RDVEAEIVPTCRELGIGIV 126 (265)
Q Consensus 108 ~~~~~~l~~~~~~~gi~v~ 126 (265)
+.+...+++.|++.|+.++
T Consensus 160 ~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 160 RVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCHHHHHHHHHcCCEEE
Confidence 1234578888888886543
No 103
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=40.11 E-value=1e+02 Score=29.00 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=43.8
Q ss_pred HhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 024605 36 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 93 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~ 93 (265)
-+|+.+.|+|.+- ..++++++-.++.+++|+...||+-.--.+.+.++.+.
T Consensus 195 ~kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 195 DKRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred HHHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 4678889998764 35789999999999999999999998888888888776
No 104
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=40.05 E-value=2.6e+02 Score=24.56 Aligned_cols=85 Identities=8% Similarity=0.011 Sum_probs=58.4
Q ss_pred ccEEEeeccCCCCCHHHHHHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhC
Q 024605 44 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELG 122 (265)
Q Consensus 44 iDl~~lH~~~~~~~~~~~~~~le~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~g 122 (265)
.++.++..|-... -++.+.++++.-.+ -..|=|-++...+..+++..-.+++|+....... -..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4666776665432 24566666665433 4667777888888888887778888877776543 246778999999
Q ss_pred Ceeeeccccccc
Q 024605 123 IGIVAYGPLGQG 134 (265)
Q Consensus 123 i~v~a~spl~~G 134 (265)
+.++..+.+.+|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 998887655444
No 105
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=39.82 E-value=5e+02 Score=27.78 Aligned_cols=102 Identities=17% Similarity=0.084 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCC-CCHHHHH-HHHHHHHHcCcc--cEEeccCCcHHHHHHHhcc--CCcee
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVTI-GELKKLVEEGKI--KYIGLSEACAATIRRAHAV--HPITA 98 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~-~~~~~~~-~~le~l~~~G~i--r~iGvS~~~~~~l~~~~~~--~~~~~ 98 (265)
.+.+.+...+.. +-|-+.||+-. +.. .+.++.+ ..+..+...-.+ --|-+-+..++.++.+++. ++.-+
T Consensus 383 ~~~al~~A~~qv-e~GA~iIDVn~----g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~II 457 (1229)
T PRK09490 383 YDEALDVARQQV-ENGAQIIDINM----DEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIV 457 (1229)
T ss_pred HHHHHHHHHHHH-HCCCCEEEECC----CCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEE
Confidence 334444333333 45999999963 322 2333333 333333322111 2366667888999999887 44434
Q ss_pred eccccCccc--cchhhhHHHHHHHhCCeeeeccccccc
Q 024605 99 VQLEWSLWS--RDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 99 ~q~~~~~~~--~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
| ..|... .+. ..+++.|++.|..|+++.-=..|
T Consensus 458 N--SIs~~~~~~~~-~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 458 N--SISLKEGEEKF-IEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred E--eCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 3 344432 222 37899999999999998643334
No 106
>PRK05414 urocanate hydratase; Provisional
Probab=39.74 E-value=1.1e+02 Score=29.01 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=44.3
Q ss_pred HHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 024605 35 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 93 (265)
Q Consensus 35 SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~ 93 (265)
.-+|+.+.|+|.+- ..++++++-.++.+++|+...||+-.--.+.+.++.+.
T Consensus 203 i~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 203 IDKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred HHHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 34688889999764 35789999999999999999999998888888888776
No 107
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=39.50 E-value=3.3e+02 Score=25.59 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHH----cCcccEEeccC--CcHHHHHHHhccC
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE----EGKIKYIGLSE--ACAATIRRAHAVH 94 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~----~G~ir~iGvS~--~~~~~l~~~~~~~ 94 (265)
...+.+.|.+.++. +...|...+-|+.=..| ...+++.+.+.++.+++ .|.++.++++- .+.+.+.++.+.+
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 35689999998875 57789877766432222 34467777788888776 57787777753 5677888877663
Q ss_pred --CceeeccccCc--------cc--cchh--hhHHHHHHHhCCeeee
Q 024605 95 --PITAVQLEWSL--------WS--RDVE--AEIVPTCRELGIGIVA 127 (265)
Q Consensus 95 --~~~~~q~~~~~--------~~--~~~~--~~l~~~~~~~gi~v~a 127 (265)
.+.++|=.||. .. ..++ -..++.+++.|+.-+.
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg 237 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVG 237 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeC
Confidence 44555555542 11 1111 3567788888886333
No 108
>PF14502 HTH_41: Helix-turn-helix domain
Probab=39.31 E-value=33 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHhcCCce
Q 024605 170 FERVNEIAMRKGCT--PAQLALAWVHHQGDDV 199 (265)
Q Consensus 170 ~~~l~~ia~~~~~s--~~q~al~~~l~~~~v~ 199 (265)
+..+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 34788899999887 6899999999887754
No 109
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.30 E-value=2.8e+02 Score=24.71 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccC-----CCCCHHHHHHHHHHHHHc-CcccEEeccC---CcHHHHHH
Q 024605 19 GKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVD-----TKIPIEVTIGELKKLVEE-GKIKYIGLSE---ACAATIRR 89 (265)
Q Consensus 19 ~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~-----~~~~~~~~~~~le~l~~~-G~ir~iGvS~---~~~~~l~~ 89 (265)
..+.++.+.+.+ +-+.|.+.|+++|.+-+.-... .......-++.++.+++. ...+...+.. ...+.++.
T Consensus 18 ~~~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 18 VRHQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CCCccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Confidence 345677887666 5566999999999996432110 011111124444454332 3355444332 24566666
Q ss_pred HhccCCceeeccccCccccchhhhHHHHHHHhCCeeeec
Q 024605 90 AHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 90 ~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 128 (265)
+.+. .++.+.+..+.-......+.+++++++|+.+...
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 6554 4555555554433333468899999999876653
No 110
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=39.04 E-value=30 Score=31.20 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=58.4
Q ss_pred HHHHcCcccEEeccCCcHHHHHHHhccC-CceeeccccCccccch-------hhhHHHHHHHhCCeeeeccccccccccC
Q 024605 67 KLVEEGKIKYIGLSEACAATIRRAHAVH-PITAVQLEWSLWSRDV-------EAEIVPTCRELGIGIVAYGPLGQGFLSS 138 (265)
Q Consensus 67 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~-------~~~l~~~~~~~gi~v~a~spl~~G~l~~ 138 (265)
+|-+.|.--.+=.|+.+.+.+..+.+.. .++-+..-+|.+-+.. -.+.-.+.++.|+.+.|+-|-..+...
T Consensus 106 ~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rG- 184 (357)
T PF05913_consen 106 KLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRG- 184 (357)
T ss_dssp HHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BT-
T ss_pred HHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccC-
Confidence 3333366666666777777787777764 3554545555554432 145567788999999998776543211
Q ss_pred CCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCC--CHHHHHHHHh
Q 024605 139 GPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTT--KIEQLNENIQ 216 (265)
Q Consensus 139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~--~~~~l~en~~ 216 (265)
. ....+|. . +.|---+..+|.+.....+.|+-|++|-. +.++++....
T Consensus 185 -P-l~~GLPT---------l-------------------E~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~ 234 (357)
T PF05913_consen 185 -P-LYEGLPT---------L-------------------EKHRNLPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQ 234 (357)
T ss_dssp -T-T-S--BS---------B-------------------GGGTTS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHH
T ss_pred -C-ccCCCCc---------c-------------------HHHcCCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHH
Confidence 1 0111111 1 11211234456777777888899999876 5555666555
Q ss_pred c
Q 024605 217 A 217 (265)
Q Consensus 217 ~ 217 (265)
.
T Consensus 235 ~ 235 (357)
T PF05913_consen 235 Y 235 (357)
T ss_dssp C
T ss_pred H
Confidence 4
No 111
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=38.47 E-value=2.3e+02 Score=25.45 Aligned_cols=86 Identities=9% Similarity=0.155 Sum_probs=54.6
Q ss_pred EEeeccCCC-----------CCHHHHHHHHHHHHHcCcccEEecc-------CCcHHHHHHHhcc---CCceeeccccCc
Q 024605 47 YYQHRVDTK-----------IPIEVTIGELKKLVEEGKIKYIGLS-------EACAATIRRAHAV---HPITAVQLEWSL 105 (265)
Q Consensus 47 ~~lH~~~~~-----------~~~~~~~~~le~l~~~G~ir~iGvS-------~~~~~~l~~~~~~---~~~~~~q~~~~~ 105 (265)
+-||.|+.+ .++++++++.+....... +.|-+- |.+.++..++.+. .+..++.++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 457888542 345677888777775544 433331 4556655555444 556899999999
Q ss_pred cccch--------hhhHHHHHHHhCCeeeecccccc
Q 024605 106 WSRDV--------EAEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 106 ~~~~~--------~~~l~~~~~~~gi~v~a~spl~~ 133 (265)
..... -....+..+++||.+..+..-+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 76431 13456667778898888776654
No 112
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.22 E-value=2.9e+02 Score=24.57 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeec---------cCCCCCHHHHHHHHHHHHHcC-cccEEeccC---CcHHH
Q 024605 20 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHR---------VDTKIPIEVTIGELKKLVEEG-KIKYIGLSE---ACAAT 86 (265)
Q Consensus 20 ~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~---------~~~~~~~~~~~~~le~l~~~G-~ir~iGvS~---~~~~~ 86 (265)
.+.++.+.+.+ +-+.|.+.|+++|.+-+.-. +.... -++.++++++.. ..+...+.. ...+.
T Consensus 18 ~~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~----~~e~i~~~~~~~~~~~~~~ll~pg~~~~~d 92 (333)
T TIGR03217 18 RHQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT----DLEYIEAAADVVKRAKVAVLLLPGIGTVHD 92 (333)
T ss_pred CCcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCC----hHHHHHHHHHhCCCCEEEEEeccCccCHHH
Confidence 35677777655 66679999999999963211 11112 233333333322 233333322 24566
Q ss_pred HHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeee
Q 024605 87 IRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 87 l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
++.+.+. .++.+.+..+.-.-..-.+.++++++.|+.+..
T Consensus 93 l~~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 93 LKAAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 7666654 455666555543333346889999999987654
No 113
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.10 E-value=2.8e+02 Score=24.41 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcccEEeccC---------CcHHHHHHHhcc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSE---------ACAATIRRAHAV 93 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 93 (265)
+.+.+.+.++..-...++ -+++ |-.-++-. ....+.+.++.+++-|.++.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I--~~Vi-lSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI--WEVI-LTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc--cEEE-EeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555443333332 2344 43333332 2456778888888888776555533 233444444444
Q ss_pred CCceeeccccCccc--cchhhhHHHHHHHhCCeeeecccccccc
Q 024605 94 HPITAVQLEWSLWS--RDVEAEIVPTCRELGIGIVAYGPLGQGF 135 (265)
Q Consensus 94 ~~~~~~q~~~~~~~--~~~~~~l~~~~~~~gi~v~a~spl~~G~ 135 (265)
+....+.++.|-.. .......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 42233444443211 1112467788899999999999998874
No 114
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=38.06 E-value=1.6e+02 Score=21.55 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=40.6
Q ss_pred EEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCC---CcccEEEeeccCCC-CCHHHHHHHHHHHHHc
Q 024605 5 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDI---DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 71 (265)
Q Consensus 5 ~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~---dyiDl~~lH~~~~~-~~~~~~~~~le~l~~~ 71 (265)
+.|+-|+|.. ..+..|++.+.+.++.... ...|++++-.+... .+..++.+.|..+.+.
T Consensus 42 isVsKKvgkA--------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 42 ISVSKKVGNA--------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEecccCch--------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 5566666652 4688888888888887643 35799999887654 4566777766666554
No 115
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.75 E-value=2.6e+02 Score=23.95 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCC-C----CCHHHHHHHHHHHHHcC---cccE-------EeccCCc---
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDT-K----IPIEVTIGELKKLVEEG---KIKY-------IGLSEAC--- 83 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~-~----~~~~~~~~~le~l~~~G---~ir~-------iGvS~~~--- 83 (265)
.++.++..+ +-..|.++|+++|++-. |.. . ...++-++.++.+++.+ ++.. +|++.++
T Consensus 17 ~~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~ 92 (275)
T cd07937 17 RMRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDV 92 (275)
T ss_pred eccHHHHHH-HHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHH
Confidence 456665555 58899999999999873 221 0 00112355555555432 2222 2222222
Q ss_pred -HHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeee
Q 024605 84 -AATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 84 -~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
...++.+.+ ..++.+.+-+..-+-..-.+.+++++++|+.+..
T Consensus 93 ~~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 93 VELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 222333333 3455555544433322236788999999987765
No 116
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=37.33 E-value=41 Score=33.18 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=51.4
Q ss_pred HHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeeccccCccccc-h
Q 024605 32 CEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRD-V 110 (265)
Q Consensus 32 ~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~ 110 (265)
+-.-|+.||+.+|-|+=+|......... +.|+.-++|-+...--... +..+. -+. +..+- .
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~----------~~gl~n~WGYdP~~fFAp~-----~~Yss--~p~-p~~~i~E 266 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLD----------KSGLNNNWGYDPLNFFAPE-----GRYAS--NPE-PATRIKE 266 (697)
T ss_pred HHHHHHHhCCceEEEecceEEecccccc----------ccccccccCCCcccccCCC-----ccccC--CCC-cchHHHH
Confidence 3567999999999999988775543222 7788888888754311110 00000 111 22222 1
Q ss_pred hhhHHHHHHHhCCeeeecccc
Q 024605 111 EAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 111 ~~~l~~~~~~~gi~v~a~spl 131 (265)
.+.++..+|+.||+||--..+
T Consensus 267 fK~mV~~lHkaGI~VILDVVf 287 (697)
T COG1523 267 FKDMVKALHKAGIEVILDVVF 287 (697)
T ss_pred HHHHHHHHHHcCCEEEEEEec
Confidence 378999999999999865444
No 117
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.18 E-value=3.1e+02 Score=24.58 Aligned_cols=133 Identities=12% Similarity=0.061 Sum_probs=77.8
Q ss_pred CCcEEEEeecCcccC--------CCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeecc-CCCCCHHHHHHHHHHHHHc-
Q 024605 2 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRV-DTKIPIEVTIGELKKLVEE- 71 (265)
Q Consensus 2 R~~~~I~TK~~~~~~--------~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~-~~~~~~~~~~~~le~l~~~- 71 (265)
|.-++|+|.+|..-. .|.....+++.|..++....+.++. .++-+.+-.. .+-...+.+.++++.+.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 567888888776432 1233467899999999888777653 3453333332 2333567899999999875
Q ss_pred Cc-ccEEeccCC-cHHHHHHHhccC------CceeeccccCccccch------------h----hhHHHHHHHhCCeeee
Q 024605 72 GK-IKYIGLSEA-CAATIRRAHAVH------PITAVQLEWSLWSRDV------------E----AEIVPTCRELGIGIVA 127 (265)
Q Consensus 72 G~-ir~iGvS~~-~~~~l~~~~~~~------~~~~~q~~~~~~~~~~------------~----~~l~~~~~~~gi~v~a 127 (265)
|. .|.+-+|+- .++.+.++.+.. ....+.+..|..+... . ..+..++.+.|-.|..
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~i 258 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSF 258 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEE
Confidence 43 356667764 345566665443 1122334434332210 1 2344666667777777
Q ss_pred cccccccc
Q 024605 128 YGPLGQGF 135 (265)
Q Consensus 128 ~spl~~G~ 135 (265)
.-|+-.|.
T Consensus 259 ey~LIpGv 266 (345)
T PRK14457 259 EYILLGGV 266 (345)
T ss_pred EEEEECCc
Confidence 77776663
No 118
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.97 E-value=2.1e+02 Score=25.62 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHc-Cc---ccEEecc--CCcHHHHHHHhcc---CCceeeccccCccccc-----hh---hhHHHHHH
Q 024605 57 PIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAHAV---HPITAVQLEWSLWSRD-----VE---AEIVPTCR 119 (265)
Q Consensus 57 ~~~~~~~~le~l~~~-G~---ir~iGvS--~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~-----~~---~~l~~~~~ 119 (265)
+++++.+++.+..+. |+ +-|+=+. |.+.+.+.++.+. .++.++.++||+.... .. ....+..+
T Consensus 224 ~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~ 303 (344)
T PRK14464 224 APEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLH 303 (344)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHH
Confidence 567888888777654 32 1333332 5677776665554 4577889999985432 11 35677778
Q ss_pred HhCCeeeecccccc
Q 024605 120 ELGIGIVAYGPLGQ 133 (265)
Q Consensus 120 ~~gi~v~a~spl~~ 133 (265)
.+|+.+..+...+.
T Consensus 304 ~~gi~~tiR~~~G~ 317 (344)
T PRK14464 304 RRGVLTKVRNSAGQ 317 (344)
T ss_pred HCCceEEEECCCCC
Confidence 89999999887765
No 119
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=36.57 E-value=2.7e+02 Score=23.81 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCCCC----HHHHHHHHHHHHHcCcccEEeccCCcHH-HHH---H-HhccCC
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIP----IEVTIGELKKLVEEGKIKYIGLSEACAA-TIR---R-AHAVHP 95 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~----~~~~~~~le~l~~~G~ir~iGvS~~~~~-~l~---~-~~~~~~ 95 (265)
.+.+.+-+.+-++.++ +++..|=++..-.... +.++.+.++.+++.|..-..=+--++.. .+. + +.+...
T Consensus 36 ~~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~g 114 (261)
T TIGR02127 36 AAGLQAFCLRIIDATA-EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHLH 114 (261)
T ss_pred HHHHHHHHHHHHHhcC-CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhcC
Confidence 3445455667778887 7888888777643321 2345566677777775433322223321 222 2 221223
Q ss_pred ceeeccccCcccc-chhhhHHHHHHHhC
Q 024605 96 ITAVQLEWSLWSR-DVEAEIVPTCRELG 122 (265)
Q Consensus 96 ~~~~q~~~~~~~~-~~~~~l~~~~~~~g 122 (265)
++. +..|++.. ..-...++.++++|
T Consensus 115 ~D~--vTvh~~~G~d~l~~~~~~~~~~~ 140 (261)
T TIGR02127 115 ADA--LTVSPYLGLDSLRPFLEYARANG 140 (261)
T ss_pred CCE--EEECCcCCHHHHHHHHHHHhhcC
Confidence 344 34445443 22245666666554
No 120
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=36.36 E-value=2.4e+02 Score=26.15 Aligned_cols=69 Identities=6% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeeeccc
Q 024605 62 IGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 62 ~~~le~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
++.+.++++...| -..|-+.++...+..+++..-++++|.......-.....+.+.|+.+|+.+..++.
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~ 337 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSN 337 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCC
Confidence 4556666665444 34455667788888888877788887765321111136889999999998877654
No 121
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=36.15 E-value=1.9e+02 Score=21.95 Aligned_cols=48 Identities=6% Similarity=-0.007 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhHc----CC----------CcccEEEeeccCC--CCCHHHHHHHHHHHHH
Q 024605 23 GDPAYVRACCEASLKRL----DI----------DCIDLYYQHRVDT--KIPIEVTIGELKKLVE 70 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~L----g~----------dyiDl~~lH~~~~--~~~~~~~~~~le~l~~ 70 (265)
..+..|++-+.++++.. .. .++|++++..+.. ..+..++-+.|+.+.+
T Consensus 65 V~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 65 VKRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 45777888787777663 32 2479999998733 2345666666655543
No 122
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.96 E-value=3.2e+02 Score=24.42 Aligned_cols=132 Identities=13% Similarity=0.044 Sum_probs=76.4
Q ss_pred CCcEEEEeecCcccC--------CCCCCCCCHHHHHHHHHHHHhHcCCCcc-cEEEeeccCCCCCHHHHHHHHHHHHH-c
Q 024605 2 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDIDCI-DLYYQHRVDTKIPIEVTIGELKKLVE-E 71 (265)
Q Consensus 2 R~~~~I~TK~~~~~~--------~~~~~~~~~~~i~~~~~~SL~~Lg~dyi-Dl~~lH~~~~~~~~~~~~~~le~l~~-~ 71 (265)
|..+.|+|-+|..-. .|...+.++++|.+++......++. .+ -++++-.-.+-...+.+.++++.+++ .
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~~ 178 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSPY 178 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhccc
Confidence 456778877776422 1234568999999999887776652 23 34555443444567789999999997 5
Q ss_pred Cc---ccEEeccCC-cHHHHHHHhccCCceeeccccCccccchh------------hhHHH----HHHHhCCeeeecccc
Q 024605 72 GK---IKYIGLSEA-CAATIRRAHAVHPITAVQLEWSLWSRDVE------------AEIVP----TCRELGIGIVAYGPL 131 (265)
Q Consensus 72 G~---ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~~~~~~~~~------------~~l~~----~~~~~gi~v~a~spl 131 (265)
|. -|++-||+- ..+.+.++.+......+.+..+..+.... .++++ +..+.+-.+.-.-|+
T Consensus 179 gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~L 258 (342)
T PRK14454 179 GLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYAL 258 (342)
T ss_pred ccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEe
Confidence 76 357777762 22346666654322224444444433211 13332 334556666666666
Q ss_pred ccc
Q 024605 132 GQG 134 (265)
Q Consensus 132 ~~G 134 (265)
-.|
T Consensus 259 I~g 261 (342)
T PRK14454 259 VKG 261 (342)
T ss_pred ECC
Confidence 665
No 123
>PLN00191 enolase
Probab=35.82 E-value=2.4e+02 Score=26.46 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=59.1
Q ss_pred ccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEe-cc-CCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHH
Q 024605 44 IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIG-LS-EACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRE 120 (265)
Q Consensus 44 iDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iG-vS-~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~ 120 (265)
.++.++..|-... -|+.+.++.+..++.-+| =+ ..++..+.++++....+++++..|-+.. ....++.+.|+.
T Consensus 311 y~I~~IEDPl~~~----D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~ 386 (457)
T PLN00191 311 YPIVSIEDPFDQD----DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKA 386 (457)
T ss_pred CCcEEEECCCCcc----cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHH
Confidence 3677777765433 377778888888887666 22 2567888888888888888888776442 123678999999
Q ss_pred hCCeeeecc
Q 024605 121 LGIGIVAYG 129 (265)
Q Consensus 121 ~gi~v~a~s 129 (265)
+|+.++.-.
T Consensus 387 ~G~~~~ish 395 (457)
T PLN00191 387 AGWGVMTSH 395 (457)
T ss_pred CCCEEEeCC
Confidence 999987643
No 124
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.62 E-value=1.9e+02 Score=26.25 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=50.0
Q ss_pred CHHHHHHHHHH-HHHcC---cccEEecc--CCcHHHHHHH---hccCCceeeccccCccccch--------hhhHHHHHH
Q 024605 57 PIEVTIGELKK-LVEEG---KIKYIGLS--EACAATIRRA---HAVHPITAVQLEWSLWSRDV--------EAEIVPTCR 119 (265)
Q Consensus 57 ~~~~~~~~le~-l~~~G---~ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~~~~~~~~--------~~~l~~~~~ 119 (265)
+++++++++.. +.+.| +|+++=+. |.+.+.+..+ +......++-++||++.... -....+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 56788888875 45556 34555554 4555454444 44345677888999875421 135677788
Q ss_pred HhCCeeeecccccc
Q 024605 120 ELGIGIVAYGPLGQ 133 (265)
Q Consensus 120 ~~gi~v~a~spl~~ 133 (265)
++|+.|..+...+.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 89999999877754
No 125
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=35.60 E-value=70 Score=30.58 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=44.1
Q ss_pred ccEEEeeccCC--CCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHh
Q 024605 44 IDLYYQHRVDT--KIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCREL 121 (265)
Q Consensus 44 iDl~~lH~~~~--~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~ 121 (265)
.=||-+|=-+. ...+.++.+.|+.|++.|- .+|=+.......-..-..+...+...+.-+.-.....+.+++.||++
T Consensus 94 ~viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv-~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~ 172 (542)
T TIGR02402 94 AVIYELHVGTFTPEGTFDAAIEKLPYLADLGI-TAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGL 172 (542)
T ss_pred cEEEEEEhhhcCCCCCHHHHHHhhHHHHHcCC-CEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHC
Confidence 34677774332 3456778888887777664 23332221000000000111111111211111222237899999999
Q ss_pred CCeeeecccccc
Q 024605 122 GIGIVAYGPLGQ 133 (265)
Q Consensus 122 gi~v~a~spl~~ 133 (265)
||.||-=.++..
T Consensus 173 Gi~VilD~V~NH 184 (542)
T TIGR02402 173 GLGVILDVVYNH 184 (542)
T ss_pred CCEEEEEEccCC
Confidence 999988666643
No 126
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=35.55 E-value=1.8e+02 Score=26.56 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-CCceeeccccCccccch-hhhHHHHHHHhCCeeeeccccccc
Q 024605 60 VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 60 ~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
.++..+..+.+.+.++.+-+...+.+.++++++. .++.++..+.|+...-. -.++.+.|+++|+-++.-...+.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4455555555555566666655567778777643 34455555667654322 268899999999988876665543
No 127
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=35.32 E-value=1.3e+02 Score=25.52 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcccEEeccCC-------cHHHHHHHhccCCceeec
Q 024605 29 RACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEA-------CAATIRRAHAVHPITAVQ 100 (265)
Q Consensus 29 ~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~ir~iGvS~~-------~~~~l~~~~~~~~~~~~q 100 (265)
...+++.|+-.| +|||++=+-|-.... +.+.+-+.++-+++.|---+.|=.-+ ..+++.+.+..-.|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 445777888888 899999998865443 33345566666666666555553322 234444455556778877
Q ss_pred cccCccccchh--hhHHHHHHHhCCeeee
Q 024605 101 LEWSLWSRDVE--AEIVPTCRELGIGIVA 127 (265)
Q Consensus 101 ~~~~~~~~~~~--~~l~~~~~~~gi~v~a 127 (265)
+.-..+.-..+ ..++..+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76555443222 4788888888887766
No 128
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=35.10 E-value=1.9e+02 Score=21.50 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhHcCC---CcccEEEeeccCCC-CCHHHHHHHHHHHHHc
Q 024605 23 GDPAYVRACCEASLKRLDI---DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 71 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~---dyiDl~~lH~~~~~-~~~~~~~~~le~l~~~ 71 (265)
..+..|++.+.+.++.+.. ...|++++-.+... .+..++.+.|..+.+.
T Consensus 62 V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 62 VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4688888888888887642 35799999988754 4667788877776654
No 129
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=34.96 E-value=2.5e+02 Score=22.92 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccC-CcHHHHHHHhccC-Cceeecc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQL 101 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~ 101 (265)
+.+...+ +-+.|-.-|+..+-+=+= . .. ..+.++.++++--=-.+|..+ .+.++++.+++.+ .|.+
T Consensus 18 ~~~~a~~-~~~al~~gGi~~iEiT~~---t--~~---a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 18 DPEDAVP-IAEALIEGGIRAIEITLR---T--PN---ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV--- 85 (196)
T ss_dssp SGGGHHH-HHHHHHHTT--EEEEETT---S--TT---HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE---
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEecC---C--cc---HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE---
Confidence 3444433 455566667766655441 1 11 334444444432335689987 5788888888763 4432
Q ss_pred ccCccccchhhhHHHHHHHhCCeeee
Q 024605 102 EWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
++ ..+.+++++|+++|+.++.
T Consensus 86 --SP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 --SP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --ES---S--HHHHHHHHHHTSEEEE
T ss_pred --CC---CCCHHHHHHHHHcCCcccC
Confidence 22 2246899999999999887
No 130
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.89 E-value=3.9e+02 Score=25.12 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcC-cccEEeccC----C--cHHHHHHHhccC
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSE----A--CAATIRRAHAVH 94 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G-~ir~iGvS~----~--~~~~l~~~~~~~ 94 (265)
..+++.|.+.++...++.|+.++ .+.........+.+.+.+++++++| .--.+++++ . +.+.+..+.+ .
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~-a 296 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR-A 296 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH-h
Confidence 35788999999998888887654 3333333334556778888888887 323344432 1 2333433333 3
Q ss_pred CceeeccccCccccc------------hhhhHHHHHHHhCCeeee
Q 024605 95 PITAVQLEWSLWSRD------------VEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 95 ~~~~~q~~~~~~~~~------------~~~~l~~~~~~~gi~v~a 127 (265)
.+..+.+..--.+.. ...+.+..|+++||.+.+
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 333333322221111 124678899999987654
No 131
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.78 E-value=3.5e+02 Score=24.56 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=58.1
Q ss_pred EEEeeccCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEecc--CCcHHHHHH---HhccC---Cceeeccc
Q 024605 46 LYYQHRVDTK-----------IPIEVTIGELKKLV-EEGK---IKYIGLS--EACAATIRR---AHAVH---PITAVQLE 102 (265)
Q Consensus 46 l~~lH~~~~~-----------~~~~~~~~~le~l~-~~G~---ir~iGvS--~~~~~~l~~---~~~~~---~~~~~q~~ 102 (265)
.+-||.++.+ .+++++++++.+.. +.|+ |+|+=+. |.+.+.+.+ ++... +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3668888642 34678899977776 4454 4556555 455555444 44434 56889999
Q ss_pred cCccccc----hh----hhHHHHHHHhCCeeeecccccc
Q 024605 103 WSLWSRD----VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 103 ~~~~~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
||++... +. ....+..+++||.+..+...+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9996531 11 3577778899999999877755
No 132
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.02 E-value=3e+02 Score=23.49 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCC-CCHHHH---HHHHHHHHHcCcccEEeccCCc-------HHHHHHHhcc
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTK-IPIEVT---IGELKKLVEEGKIKYIGLSEAC-------AATIRRAHAV 93 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~-~~~~~~---~~~le~l~~~G~ir~iGvS~~~-------~~~l~~~~~~ 93 (265)
..+..+.+.+.-++.|.-||.==+|-..-.. .++... +..||++-+.| .-|++--. .+.++..+.-
T Consensus 73 K~~a~~~V~~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~---~~~~tKkE~l~l~re~~kL~k~lgG 149 (252)
T COG0052 73 KKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG---FDGLTKKEALMLTRELEKLEKSLGG 149 (252)
T ss_pred hHHHHHHHHHHHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcc---cccccHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888899999888764443322222 122222 33345555666 23333211 2223333322
Q ss_pred CC-----ceeeccccCccccchhhhHHHHHHHhCCeeeec
Q 024605 94 HP-----ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 94 ~~-----~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 128 (265)
.+ |+++= +.++..+...+..|++.||.|++.
T Consensus 150 Ik~m~~~Pd~l~----ViDp~~e~iAv~EA~klgIPVvAl 185 (252)
T COG0052 150 IKDMKGLPDVLF----VIDPRKEKIAVKEANKLGIPVVAL 185 (252)
T ss_pred hhhccCCCCEEE----EeCCcHhHHHHHHHHHcCCCEEEE
Confidence 22 45432 345555778899999999999984
No 133
>PRK07945 hypothetical protein; Provisional
Probab=33.33 E-value=3.5e+02 Score=24.05 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEec
Q 024605 41 IDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL 79 (265)
Q Consensus 41 ~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGv 79 (265)
.||+ |.-+|+... ....+..+.+.++.+.|.+..+|-
T Consensus 191 ~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 191 LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEec
Confidence 4555 666776532 223445577777777777777774
No 134
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.33 E-value=1.9e+02 Score=25.84 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeee
Q 024605 62 IGELKKLVEEGKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 62 ~~~le~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a 127 (265)
++.+.++++..-| -..|=+.++...+..++....++++|+..+..-. ....++.+.|+.+|+.++.
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 4566666665433 3455566778888888887778888877665431 1135788999999998753
No 135
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=33.11 E-value=91 Score=24.82 Aligned_cols=64 Identities=20% Similarity=0.148 Sum_probs=38.2
Q ss_pred HHHHHHHHHhHcCCCc----ccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 024605 28 VRACCEASLKRLDIDC----IDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV 93 (265)
Q Consensus 28 i~~~~~~SL~~Lg~dy----iDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~ 93 (265)
.++.++..++++|.+. ++.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3566777777888752 11111111 11223457888999999988 55566788776666655543
No 136
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=32.93 E-value=3.6e+02 Score=24.15 Aligned_cols=92 Identities=14% Similarity=0.270 Sum_probs=56.4
Q ss_pred CcccEEE-eeccCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEecc--CCcHHHHHHHhcc---C-----C
Q 024605 42 DCIDLYY-QHRVDTK-----------IPIEVTIGELKKLVE-EGK---IKYIGLS--EACAATIRRAHAV---H-----P 95 (265)
Q Consensus 42 dyiDl~~-lH~~~~~-----------~~~~~~~~~le~l~~-~G~---ir~iGvS--~~~~~~l~~~~~~---~-----~ 95 (265)
.++||.+ ||.++.+ ..++++++++.+..+ .|. |+++=+. |.+.+.+.++.+. . .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577755 7777432 235667776666555 343 3444443 4565665555443 2 3
Q ss_pred ceeeccccCccccc------hh----hhHHHHHHHhCCeeeecccccc
Q 024605 96 ITAVQLEWSLWSRD------VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 96 ~~~~q~~~~~~~~~------~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
..++-++||++... +. ....+..+++|+.+..+...+.
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 56788999987432 11 3567778888999998877754
No 137
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.77 E-value=2.4e+02 Score=23.00 Aligned_cols=86 Identities=8% Similarity=0.008 Sum_probs=54.4
Q ss_pred CcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeeccccC-ccccchhhhHHHHHHH
Q 024605 42 DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWS-LWSRDVEAEIVPTCRE 120 (265)
Q Consensus 42 dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~l~~~~~~ 120 (265)
.-..+..+.+.. --+....+.+.|-. .+...-.+.+.+.++++.....++-+... .-.......+++.|.+
T Consensus 21 ~~~~V~~l~R~~-------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP-------SSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS-------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-------chhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 345777777754 12345566677774 56666667888888887655444444432 2222234789999999
Q ss_pred hCCeeeecccccccc
Q 024605 121 LGIGIVAYGPLGQGF 135 (265)
Q Consensus 121 ~gi~v~a~spl~~G~ 135 (265)
.||..+.++.++...
T Consensus 93 agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 93 AGVKHFVPSSFGADY 107 (233)
T ss_dssp HT-SEEEESEESSGT
T ss_pred cccceEEEEEecccc
Confidence 999999999887753
No 138
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.73 E-value=1.2e+02 Score=24.95 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccC-CcHHHHHHHhccC-Cceeecc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQL 101 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~ 101 (265)
+++...+ +-+.|.+-|+.-+-+=+= . .+..+.+++++++..=-.||.-+ .+.++++.+++.+ .|-
T Consensus 14 ~~~~a~~-ia~al~~gGi~~iEit~~-t-------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi---- 80 (201)
T PRK06015 14 DVEHAVP-LARALAAGGLPAIEITLR-T-------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI---- 80 (201)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEeCC-C-------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE----
Confidence 4555544 455666668877766551 1 12456666676654435789877 5788888888763 342
Q ss_pred ccCccccchhhhHHHHHHHhCCeeee
Q 024605 102 EWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
.++. .+.+++++|+++||.++.
T Consensus 81 -vSP~---~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 -VSPG---TTQELLAAANDSDVPLLP 102 (201)
T ss_pred -ECCC---CCHHHHHHHHHcCCCEeC
Confidence 2232 246899999999998887
No 139
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.36 E-value=3e+02 Score=23.08 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=33.4
Q ss_pred EeccCC-----cHHHHHHHhccCCceeeccccC------c-cccchhhhHHHHHHHhCCeeeeccccccc
Q 024605 77 IGLSEA-----CAATIRRAHAVHPITAVQLEWS------L-WSRDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 77 iGvS~~-----~~~~l~~~~~~~~~~~~q~~~~------~-~~~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
+|+|++ +.++..+.+....++.+++..+ . +.....+.+.+.+.+.|+.+.++.+...+
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 455543 3444444444456666665321 1 11112357888999999999988775543
No 140
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=32.30 E-value=2.6e+02 Score=24.42 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=50.7
Q ss_pred hhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCC------CH
Q 024605 111 EAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGC------TP 184 (265)
Q Consensus 111 ~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~ 184 (265)
+..+.+.+.+-++-++.-++=.+. -.+|.++|++.|. ++
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSN-----------------------------------s~rL~eiA~~~g~~aylId~~ 247 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSN-----------------------------------SNRLAEIAKRHGKPAYLIDDA 247 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCcc-----------------------------------HHHHHHHHHHhCCCeEEeCCh
Confidence 567788888878777764443331 1378999999887 56
Q ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Q 024605 185 AQLALAWVHHQGDDVCPIPGTTKIEQLNENI 215 (265)
Q Consensus 185 ~q~al~~~l~~~~v~~~i~G~~~~~~l~en~ 215 (265)
.++-..|..... ...+..|+|+|+-|-+++
T Consensus 248 ~ei~~~w~~~~~-~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 248 EEIDPEWLKGVK-TVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HhCCHHHhcCcc-EEEEecCCCCCHHHHHHH
Confidence 888888987744 458889999999887765
No 141
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=32.21 E-value=3.4e+02 Score=24.41 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=61.4
Q ss_pred CCcEEEEeecCcccC--------CCCCCCCCHHHHHHHHHHHHhHcCCC----cccEEEeeccCCCCCHHHHHHHHHHHH
Q 024605 2 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDID----CIDLYYQHRVDTKIPIEVTIGELKKLV 69 (265)
Q Consensus 2 R~~~~I~TK~~~~~~--------~~~~~~~~~~~i~~~~~~SL~~Lg~d----yiDl~~lH~~~~~~~~~~~~~~le~l~ 69 (265)
|.-+.|+|-+|+.-. .|...+.+..+|..++....+.+|.. ---++++---.+-..++.+..+++-+.
T Consensus 100 r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~ 179 (349)
T COG0820 100 RNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIIN 179 (349)
T ss_pred CceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhc
Confidence 456788888876432 12456889999999999999999874 334555443334445778888888887
Q ss_pred H-cCc--c-cEEeccCCc-HHHHHHHhc
Q 024605 70 E-EGK--I-KYIGLSEAC-AATIRRAHA 92 (265)
Q Consensus 70 ~-~G~--i-r~iGvS~~~-~~~l~~~~~ 92 (265)
+ .|. . |.|-+|+-. ...+.++.+
T Consensus 180 ~~~G~~ls~R~iTvSTsGi~~~I~~l~~ 207 (349)
T COG0820 180 DDEGLGLSKRRITVSTSGIVPRIRKLAD 207 (349)
T ss_pred CcccccccceEEEEecCCCchhHHHHHh
Confidence 3 332 1 777888755 567777764
No 142
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=32.10 E-value=2.2e+02 Score=24.18 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcc
Q 024605 20 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 20 ~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~i 74 (265)
....+.++...-.+-+.+-+++|+|-|=.+-..+.-. +.-+++++.|.|+++|-+
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 3467788888888888999999999888876665544 355899999999999975
No 143
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=32.04 E-value=1.6e+02 Score=22.29 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHcC--CCcccEEEeeccCCCCCHH-HHHHHHHHHHHcCc
Q 024605 25 PAYVRACCEASLKRLD--IDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGK 73 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg--~dyiDl~~lH~~~~~~~~~-~~~~~le~l~~~G~ 73 (265)
..++.+..+...++|| .+-+.+.+.-......+.+ .+-++|+++.++|.
T Consensus 40 ~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~ 91 (135)
T cd00419 40 PDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGV 91 (135)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 5667777777788888 4445565554333322222 47788889999883
No 144
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.03 E-value=3.8e+02 Score=24.05 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=55.3
Q ss_pred EEeeccCCC-----------CCHHHHHHHHHHHHHcC--c--ccEEecc--CCcHHHHHHHhc---cCCceeeccccCcc
Q 024605 47 YYQHRVDTK-----------IPIEVTIGELKKLVEEG--K--IKYIGLS--EACAATIRRAHA---VHPITAVQLEWSLW 106 (265)
Q Consensus 47 ~~lH~~~~~-----------~~~~~~~~~le~l~~~G--~--ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~~~ 106 (265)
+-||.++.. .+++++++++.+....+ + ++|+=+. |.+.+.+.++.+ ..+..++-++||++
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 458887532 23467788877766644 2 3455555 445565555444 34567888999987
Q ss_pred ccc----hh----hhHHHHHHHhCCeeeecccccc
Q 024605 107 SRD----VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 107 ~~~----~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
... +. .......+++||.+..+...+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 421 11 3556777889999999887764
No 145
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=31.96 E-value=4.5e+02 Score=24.96 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCc----------ccEEeccCCcHHHHHHH
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK----------IKYIGLSEACAATIRRA 90 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~----------ir~iGvS~~~~~~l~~~ 90 (265)
..++.+.-. .+-+.|.++|+|+|.+-+ |... .+..++++.+.+.++ .+-.+++....+.++.+
T Consensus 101 v~fs~eeKi-~Ia~~L~~~GVd~IEvG~---Pa~s---~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 101 GSLTPPQKL-EIARQLAKLRVDIMEVGF---PGSS---EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCCHHHHH-HHHHHHHHcCCCEEEEeC---CCCC---HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 457777644 477779999999988854 3322 223444555544321 23345555555555555
Q ss_pred hccC---Cceeeccc--cCccc------cch------hhhHHHHHHHhCCeeeecccccc
Q 024605 91 HAVH---PITAVQLE--WSLWS------RDV------EAEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 91 ~~~~---~~~~~q~~--~~~~~------~~~------~~~l~~~~~~~gi~v~a~spl~~ 133 (265)
.+.. ..+.+.+. .|.+. ... -.+.+++++++|...+.+++-..
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa 233 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDG 233 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccc
Confidence 5431 22222221 11111 110 14688899999876455555433
No 146
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=31.87 E-value=1.6e+02 Score=27.94 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc---CCceeeccc
Q 024605 35 SLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITAVQLE 102 (265)
Q Consensus 35 SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~ 102 (265)
.-+|+.+.|+|.+- ..+++.++-.++.+++|+...||+-.--.+.+.++.+. +.+.+-|..
T Consensus 193 i~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS 256 (546)
T PF01175_consen 193 IEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTS 256 (546)
T ss_dssp HHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SS
T ss_pred HHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCc
Confidence 34677788999875 34789999999999999999999998888888888776 233444654
No 147
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=31.79 E-value=2.7e+02 Score=24.19 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHhHc---CCCcccEEEeeccC--CCCCHH----HHHHHHHHHHHcCcccE-Eec---cCCcHHHHHH
Q 024605 23 GDPAYVRACCEASLKRL---DIDCIDLYYQHRVD--TKIPIE----VTIGELKKLVEEGKIKY-IGL---SEACAATIRR 89 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~L---g~dyiDl~~lH~~~--~~~~~~----~~~~~le~l~~~G~ir~-iGv---S~~~~~~l~~ 89 (265)
.+++.+.......++.+ ||-|+|+.+--... .....+ .+.+++++++++--|+. +.+ ...+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 46777776666665554 88899987432211 112233 34567777766543432 222 2234444444
Q ss_pred Hhc----cCCceeeccccCc----cccchhhhHHHHHHHhCCeeeeccc
Q 024605 90 AHA----VHPITAVQLEWSL----WSRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 90 ~~~----~~~~~~~q~~~~~----~~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
.++ ...-.++-+.... ........+++.|++.|+.+..+..
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCC
Confidence 332 2111122222211 1111236889999999998887754
No 148
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=31.75 E-value=74 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhHcCCCcc--cEEEeeccCCCCCHHHHHHHHHHHHHcCcccE
Q 024605 25 PAYVRACCEASLKRLDIDCI--DLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY 76 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyi--Dl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~ 76 (265)
.+...+.+.+.|++||+.+= ..+.-+.+ ...+.+++.+++|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 34556778899999998542 23332222 235679999999999999844
No 149
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.67 E-value=3.4e+02 Score=24.32 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCcEEEEeecCcccC-----C---CCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHH-cC
Q 024605 2 RERVELATKFGISFA-----D---GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE-EG 72 (265)
Q Consensus 2 R~~~~I~TK~~~~~~-----~---~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~-~G 72 (265)
|..+.|+|-.|.... . +.....+.+.|..++.......++++| .++-.-.+-...+++.++++.+.+ .|
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~g 179 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDG 179 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccc
Confidence 566777777665322 1 123457899999888887766665544 444322333456789999998886 56
Q ss_pred c---ccEEeccCCc-HHHHHHHhc
Q 024605 73 K---IKYIGLSEAC-AATIRRAHA 92 (265)
Q Consensus 73 ~---ir~iGvS~~~-~~~l~~~~~ 92 (265)
. .+.+.||+-. .+.+.++..
T Consensus 180 l~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 180 LQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred cCcCCceEEEECCCchHHHHHHhh
Confidence 5 4677777643 455555544
No 150
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=31.66 E-value=3.1e+02 Score=22.89 Aligned_cols=98 Identities=13% Similarity=0.246 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcc------cEEeccCC-cHHHHHHHhccCCcee
Q 024605 26 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI------KYIGLSEA-CAATIRRAHAVHPITA 98 (265)
Q Consensus 26 ~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~i------r~iGvS~~-~~~~l~~~~~~~~~~~ 98 (265)
.+....++..-+--....|+-++|...+......|.+.-.++|.+.|-- .|-|+++. |+-+..++.+...|.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 4556667777777777889999998877777888999999999999963 56788774 5567777777777776
Q ss_pred eccccCccccchhhhHHHHHHHhCCeeeecc
Q 024605 99 VQLEWSLWSRDVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 99 ~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 129 (265)
+-=.||- + ..+=.|+.+||.-+++.
T Consensus 156 ItQ~FHc-----e-RAlfiA~~~gIdAic~~ 180 (235)
T COG2949 156 ITQRFHC-----E-RALFIARQMGIDAICFA 180 (235)
T ss_pred Eeccccc-----H-HHHHHHHHhCCceEEec
Confidence 6555553 3 34456899999877653
No 151
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=31.61 E-value=2.8e+02 Score=24.14 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Q 024605 172 RVNEIAMRKGC------TPAQLALAWVHHQGDDVCPIPGTTKIEQLNEN 214 (265)
Q Consensus 172 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en 214 (265)
.|.++|++.|. ++.++-..|.-... ...+..|+|+|+.+-+.
T Consensus 225 rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~li~e 272 (280)
T TIGR00216 225 RLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDWIIEE 272 (280)
T ss_pred HHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHHHHHH
Confidence 68888988874 67888888887654 46889999999977554
No 152
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=31.42 E-value=3.3e+02 Score=25.63 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC---CC----HHHHHHHHHHHHH-cCccc--EEeccCCcHHHHHH-
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK---IP----IEVTIGELKKLVE-EGKIK--YIGLSEACAATIRR- 89 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~---~~----~~~~~~~le~l~~-~G~ir--~iGvS~~~~~~l~~- 89 (265)
...+++...+.+.+... =|+| ++==...-.+ .+ +..+++++++..+ .|+-+ ++-++..+.+++.+
T Consensus 178 ~GLsp~~~A~~~y~~~~-GGvD---~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~r 253 (475)
T CHL00040 178 LGLSAKNYGRAVYECLR-GGLD---FTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKR 253 (475)
T ss_pred cCCCHHHHHHHHHHHHc-CCCc---ccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHH
Confidence 46788887777666652 2544 3321111111 12 3357777777665 45533 44444334555443
Q ss_pred ---HhccCCceeeccccCccccchhhhHHHHHHHhCCeeeeccccccc
Q 024605 90 ---AHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 90 ---~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
+.+ ....++++.++..--.....+.+.|++.++.++++..+.+.
T Consensus 254 a~~a~e-~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~ga 300 (475)
T CHL00040 254 AVFARE-LGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300 (475)
T ss_pred HHHHHH-cCCceEEEeccccccchHHHHHHHhhhcCceEEeccccccc
Confidence 333 33345677666654444567888888899999998888764
No 153
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=31.03 E-value=76 Score=27.87 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcc
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~i 74 (265)
.+...+.+.+.+++||++ +|.+.-. ........+.+.+++|+++|.|
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 345577789999999996 5864322 1112345688999999999998
No 154
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=30.76 E-value=3.6e+02 Score=23.37 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeeccCCCC---CHHHHHHHHHHHHHcC
Q 024605 22 RGDPAYVRACCEASLKRLDI--------------------------DCIDLYYQHRVDTKI---PIEVTIGELKKLVEEG 72 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~--------------------------dyiDl~~lH~~~~~~---~~~~~~~~le~l~~~G 72 (265)
......+++.++.-|++|.+ -..+|+.|..|.... ..+-+-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 45677889999999999873 234556665554332 2344667888999999
Q ss_pred cccEEeccCCcHHHHHHHhcc
Q 024605 73 KIKYIGLSEACAATIRRAHAV 93 (265)
Q Consensus 73 ~ir~iGvS~~~~~~l~~~~~~ 93 (265)
. .|=+|+|..++++++++.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 8 688999999999998875
No 155
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=30.60 E-value=1.6e+02 Score=20.33 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcC-cccEEeccCC-cHHHHHHHhccCCceeeccccC
Q 024605 36 LKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG-KIKYIGLSEA-CAATIRRAHAVHPITAVQLEWS 104 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~~ 104 (265)
+..++....|++++-......... +.++.+++.+ .++-|.+++. +.....++++.+-.+++.-+++
T Consensus 36 ~~~~~~~~~d~iiid~~~~~~~~~---~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPDGDGL---ELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHHHHHSTESEEEEESSSSSSBHH---HHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred HHHhcccCceEEEEEeeecccccc---ccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 333344458999987655554434 4444555555 7777878764 4456666666554445444443
No 156
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.58 E-value=2.2e+02 Score=25.61 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=55.0
Q ss_pred EEeeccCCC-----------CCHHHHHHHHHHHHHcC----cccEEecc--CCcHHHHHHHh---ccCCceeeccccCcc
Q 024605 47 YYQHRVDTK-----------IPIEVTIGELKKLVEEG----KIKYIGLS--EACAATIRRAH---AVHPITAVQLEWSLW 106 (265)
Q Consensus 47 ~~lH~~~~~-----------~~~~~~~~~le~l~~~G----~ir~iGvS--~~~~~~l~~~~---~~~~~~~~q~~~~~~ 106 (265)
+-||.++.+ .+.++++++++.+.+.+ +|+++=+. |.+.+.+.++. ...+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 557777532 23578999999887754 23455444 44445554444 334466788899987
Q ss_pred ccc----h-h---hhHHHHHHHhCCeeeecccccc
Q 024605 107 SRD----V-E---AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 107 ~~~----~-~---~~l~~~~~~~gi~v~a~spl~~ 133 (265)
... + . ..+.+.+.++|+.+..+...+.
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 531 1 1 3556668889999988776654
No 157
>PRK08609 hypothetical protein; Provisional
Probab=30.05 E-value=3.9e+02 Score=25.75 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhCCCHHHH
Q 024605 170 FERVNEIAMRKGCTPAQL 187 (265)
Q Consensus 170 ~~~l~~ia~~~~~s~~q~ 187 (265)
++.-..++++-+.++.++
T Consensus 536 ~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 536 MKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHHHHHHcCCCHHHc
Confidence 344556666666665543
No 158
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=30.03 E-value=2.3e+02 Score=20.98 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=39.5
Q ss_pred cEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCC------cccEEEeeccCCC-CCHHHHHHHHHHH
Q 024605 4 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDID------CIDLYYQHRVDTK-IPIEVTIGELKKL 68 (265)
Q Consensus 4 ~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~d------yiDl~~lH~~~~~-~~~~~~~~~le~l 68 (265)
.+.|+-|++.. ...+..+++-+.++++.+..+ -.|++++-.+... .+..++.+.|+.+
T Consensus 49 G~sVSKKv~~k-------AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l 113 (118)
T PRK01492 49 GIKVSRKLNKK-------AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKI 113 (118)
T ss_pred EEEEecccCCc-------hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHH
Confidence 45666664432 346889999999999887542 5799999887654 3555666666554
No 159
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=29.89 E-value=3.3e+02 Score=23.93 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=32.4
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Q 024605 172 RVNEIAMRKGC------TPAQLALAWVHHQGDDVCPIPGTTKIEQLNEN 214 (265)
Q Consensus 172 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en 214 (265)
.|.++|++.+. +..++-..|..... ...+..|+|+|+-+-+.
T Consensus 227 kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~e 274 (298)
T PRK01045 227 RLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQE 274 (298)
T ss_pred HHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHH
Confidence 68888888774 67888889986543 45888999999976543
No 160
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=29.88 E-value=2.2e+02 Score=25.95 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCc--c-cEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeec
Q 024605 61 TIGELKKLVEEGK--I-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 61 ~~~~le~l~~~G~--i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~ 128 (265)
-++.+.+|++.-. | -..|-+.++...++.+++...++++|+...-.-. .....+...|+.+|+.+..+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 3567777777654 2 2347778888999999998889999988776431 12368899999999998665
No 161
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.86 E-value=96 Score=17.49 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCCHHHHH
Q 024605 169 LFERVNEIAMRKGCTPAQLA 188 (265)
Q Consensus 169 ~~~~l~~ia~~~~~s~~q~a 188 (265)
..+.+..+|++.|+|..++.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 45689999999999988754
No 162
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=29.81 E-value=1.3e+02 Score=22.21 Aligned_cols=53 Identities=30% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCccc
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIK 75 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir 75 (265)
.++..+...+...++.-....+-=-.+-.++.+.-.++..+.|.+|+++|||.
T Consensus 53 ~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 53 RDRSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred EecccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 34566667777777766555541122334566666788999999999999984
No 163
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=29.67 E-value=2.5e+02 Score=26.91 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeeccCCCC---CHHHHHHHHHHHHHcCcccEEec
Q 024605 26 AYVRACCEASLKRLDIDCIDLYYQHRVDTKI---PIEVTIGELKKLVEEGKIKYIGL 79 (265)
Q Consensus 26 ~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~---~~~~~~~~le~l~~~G~ir~iGv 79 (265)
+...+-++..++..+-.+.+ -|-.-... .+.+.+..+-+++++|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 56677788888888777776 22221111 23356667788899999998755
No 164
>PRK00077 eno enolase; Provisional
Probab=29.67 E-value=4.5e+02 Score=24.22 Aligned_cols=95 Identities=7% Similarity=0.041 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcC--cccEEeccC--CcHHHHHHHhccCCceee
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLSE--ACAATIRRAHAVHPITAV 99 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~~ 99 (265)
+++....-+.+.++. .+++++..|-...+ |+.+.+|.+.- ++.-.|=-. .++..++.+++....+++
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v 332 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSI 332 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEE
Confidence 455555444554444 46888888765443 56666666653 454433322 358899999988888899
Q ss_pred ccccCcccc-chhhhHHHHHHHhCCeeee
Q 024605 100 QLEWSLWSR-DVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 100 q~~~~~~~~-~~~~~l~~~~~~~gi~v~a 127 (265)
|+..+-+-. ....++...|+.+|+.++.
T Consensus 333 ~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 333 LIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 988776542 1236789999999998665
No 165
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=29.54 E-value=2.4e+02 Score=20.93 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhHcCC--CcccEEEeeccCCC-CCHHHHHHHHHHHHHc
Q 024605 23 GDPAYVRACCEASLKRLDI--DCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 71 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~--dyiDl~~lH~~~~~-~~~~~~~~~le~l~~~ 71 (265)
..+..|++-+.++++.... +..|++++..+... .+..++.+.|..|.+.
T Consensus 59 V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 59 VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4678888888888876543 34699999988654 3555666666655443
No 166
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=29.51 E-value=1.5e+02 Score=25.71 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=37.7
Q ss_pred ccEEEeeccCCCCC---HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhc
Q 024605 44 IDLYYQHRVDTKIP---IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA 92 (265)
Q Consensus 44 iDl~~lH~~~~~~~---~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~ 92 (265)
.++++|..|....+ ..++++.+.++.++|. +.|=+|+|..+.++.+++
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 46677766655543 3589999999999997 688999999999888755
No 167
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.48 E-value=2.2e+02 Score=26.38 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=54.6
Q ss_pred HhHcCCCcccEEEeeccCC-CCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--------CCceeeccccCcc
Q 024605 36 LKRLDIDCIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV--------HPITAVQLEWSLW 106 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~-~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~--------~~~~~~q~~~~~~ 106 (265)
++.||++|- ++..|.. ..... +-...+=+.|-+..+|....+++++++.+.. .+|-+|.+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss~---eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIASA---ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCCH---HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 466777764 3334433 12222 3334555789999999999898887665433 25666654 3332
Q ss_pred ccchhhhHHHHHHHhCCeeeeccc
Q 024605 107 SRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 107 ~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
+...+..+++.|.++||.++.-+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 332246789999999998776553
No 168
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=29.29 E-value=3.1e+02 Score=24.12 Aligned_cols=90 Identities=9% Similarity=0.043 Sum_probs=54.8
Q ss_pred cEEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHH---HHHHHHHHHHcCcccEEecc
Q 024605 4 RVELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEV---TIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 4 ~~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~---~~~~le~l~~~G~ir~iGvS 80 (265)
++-|+.|+...+ + +.+. ...+-+.|+..|+ |.+.+|.-........ -|+...++++.-.|--||..
T Consensus 133 ~~pVsvKiR~g~------~-~~~~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nG 201 (312)
T PRK10550 133 HLPVTVKVRLGW------D-SGER-KFEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANG 201 (312)
T ss_pred CcceEEEEECCC------C-CchH-HHHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeC
Confidence 356777865432 1 1122 2356666777775 6667786433222111 26777777777677777777
Q ss_pred C-CcHHHHHHHhccCCceeeccccC
Q 024605 81 E-ACAATIRRAHAVHPITAVQLEWS 104 (265)
Q Consensus 81 ~-~~~~~l~~~~~~~~~~~~q~~~~ 104 (265)
. .+++.+.++++....+.+++-=.
T Consensus 202 dI~t~~da~~~l~~~g~DgVmiGRg 226 (312)
T PRK10550 202 EIWDWQSAQQCMAITGCDAVMIGRG 226 (312)
T ss_pred CcCCHHHHHHHHhccCCCEEEEcHH
Confidence 6 47778888777777777776433
No 169
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=29.26 E-value=3.7e+02 Score=23.40 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=32.7
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Q 024605 172 RVNEIAMRKGC------TPAQLALAWVHHQGDDVCPIPGTTKIEQLNEN 214 (265)
Q Consensus 172 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en 214 (265)
.|.++|++.+. ++.++-..|..... ...+..|+|+|+.+-+.
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~e 273 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEE 273 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHH
Confidence 68888888774 67888888987654 45888999999977554
No 170
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=29.14 E-value=1.4e+02 Score=21.68 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=31.4
Q ss_pred cCCcHHHHHHHhccCCceeeccccCccccchhhhHHHHHHHhCCeeeecccc
Q 024605 80 SEACAATIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 80 S~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
+.-+.+.+..+....+++++-+--..-.+....++.++++++||++-.+..-
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445566666555433555544333222233467899999999999887543
No 171
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=28.99 E-value=1.3e+02 Score=24.17 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCc
Q 024605 30 ACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEAC 83 (265)
Q Consensus 30 ~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~ 83 (265)
.+++++|..- .-+|++++..-.....++-+..|+.+..+|++|++-+--++
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 3455555543 45788887655555566778999999999999998664443
No 172
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.90 E-value=3.1e+02 Score=24.95 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=59.6
Q ss_pred CCcEEEEeecCcccC--------CCCCCCCCHHHHHHHHHHHHhHcCC-------------Ccc-cEEEeeccCCCCCHH
Q 024605 2 RERVELATKFGISFA--------DGGKIRGDPAYVRACCEASLKRLDI-------------DCI-DLYYQHRVDTKIPIE 59 (265)
Q Consensus 2 R~~~~I~TK~~~~~~--------~~~~~~~~~~~i~~~~~~SL~~Lg~-------------dyi-Dl~~lH~~~~~~~~~ 59 (265)
|..+.|||-+|+.-. .|...+.++.+|..++...-+.|+. ..| -++++-.-.+-..++
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 667889998887432 1356788999999998877666532 112 334433323334567
Q ss_pred HHHHHHHHHHHc-Cc---ccEEeccCCc-HHHHHHHhccC
Q 024605 60 VTIGELKKLVEE-GK---IKYIGLSEAC-AATIRRAHAVH 94 (265)
Q Consensus 60 ~~~~~le~l~~~-G~---ir~iGvS~~~-~~~l~~~~~~~ 94 (265)
.++++++.+.+. |. -|.|-||+-. +..+.++.+..
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~ 225 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANER 225 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcc
Confidence 899999999775 22 3677777754 45676766543
No 173
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.76 E-value=3.4e+02 Score=22.52 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=16.6
Q ss_pred EecCCCCCHHHHHHHHhccCC
Q 024605 200 CPIPGTTKIEQLNENIQALSV 220 (265)
Q Consensus 200 ~~i~G~~~~~~l~en~~~~~~ 220 (265)
++=.|.+++||.++.....+.
T Consensus 211 AVGFGvst~EHf~qVgsvaDG 231 (268)
T KOG4175|consen 211 AVGFGVSTPEHFKQVGSVADG 231 (268)
T ss_pred eEeeccCCHHHHHhhhhhccc
Confidence 777788999999887776554
No 174
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.71 E-value=4.3e+02 Score=23.67 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred EEeecc-----------CCCCCHHHHHHHHHHHHHcCccc----EEeccCCcH-----HHHHHHhccCCceeeccccCcc
Q 024605 47 YYQHRV-----------DTKIPIEVTIGELKKLVEEGKIK----YIGLSEACA-----ATIRRAHAVHPITAVQLEWSLW 106 (265)
Q Consensus 47 ~~lH~~-----------~~~~~~~~~~~~le~l~~~G~ir----~iGvS~~~~-----~~l~~~~~~~~~~~~q~~~~~~ 106 (265)
+-||.| ....+++++++++..+.++-+-+ |+=+...+- +.+.+++...+..++.++||+-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Q ss_pred ccchh-------hhHHHHHHHhCCeeeecccccc
Q 024605 107 SRDVE-------AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 107 ~~~~~-------~~l~~~~~~~gi~v~a~spl~~ 133 (265)
..... ....+..+++|+.+..+...+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 175
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=28.65 E-value=2.2e+02 Score=20.39 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=37.3
Q ss_pred EEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcC--CCcccEEEeeccCCC-CCHHHHHHHHHHH
Q 024605 5 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKL 68 (265)
Q Consensus 5 ~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg--~dyiDl~~lH~~~~~-~~~~~~~~~le~l 68 (265)
+.|+-|+|. ...+..+++.+.++++... ....|++++-.+... .+..++.+.|+.|
T Consensus 45 i~vsKK~g~--------AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l 103 (105)
T TIGR00188 45 LSVSKKVKN--------AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQL 103 (105)
T ss_pred EEEecccCc--------hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHH
Confidence 455566554 2467778888888777553 235798888887654 4667777777765
No 176
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.57 E-value=76 Score=25.16 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=56.8
Q ss_pred HHHHHHHHHhHcCCCcccEEEeeccCC--------------CCCHHHHHHHHHHHHHcC-cccEEeccCCc--HHHHHHH
Q 024605 28 VRACCEASLKRLDIDCIDLYYQHRVDT--------------KIPIEVTIGELKKLVEEG-KIKYIGLSEAC--AATIRRA 90 (265)
Q Consensus 28 i~~~~~~SL~~Lg~dyiDl~~lH~~~~--------------~~~~~~~~~~le~l~~~G-~ir~iGvS~~~--~~~l~~~ 90 (265)
+.++++...+.+-.+-.|++.-..... .....+++++|..++..| +|-.+|..+.. ...+.++
T Consensus 19 ~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~l 98 (176)
T PF06506_consen 19 LEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEEL 98 (176)
T ss_dssp HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHH
Confidence 444555555443446778888776521 112347889999888766 66666666643 4566666
Q ss_pred hccCCceeeccccCccccchhhhHHHHHHHhCCeeeecccc
Q 024605 91 HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 91 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
+. +++.+..|+- ...-...+..+.+.|+.++.-+..
T Consensus 99 l~---~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 99 LG---VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp HT----EEEEEEESS--HHHHHHHHHHHHHTT--EEEESHH
T ss_pred hC---CceEEEEECC--HHHHHHHHHHHHHcCCcEEECCHH
Confidence 53 3444444442 222367888899999988875443
No 177
>COG0218 Predicted GTPase [General function prediction only]
Probab=28.31 E-value=3.4e+02 Score=22.34 Aligned_cols=58 Identities=12% Similarity=-0.047 Sum_probs=40.9
Q ss_pred EEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcCCCcccE--EEeeccCCCCCHHHHHHHHHHHHHc
Q 024605 5 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLDIDCIDL--YYQHRVDTKIPIEVTIGELKKLVEE 71 (265)
Q Consensus 5 ~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl--~~lH~~~~~~~~~~~~~~le~l~~~ 71 (265)
+++.||+--. ......+.+....+.|+.+.-|- +.+........+++++..+.....+
T Consensus 139 ~vv~tK~DKi---------~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 139 IVVLTKADKL---------KKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEEEccccC---------ChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 6788887643 56667777888888888777665 5555555555688888888776543
No 178
>PLN02449 ferrochelatase
Probab=28.18 E-value=3.6e+02 Score=25.46 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhHcCCC----cccEEEeeccCCCCCHH-HHHHHHHHHHHcCc----ccEEeccCCcHHHHHHH
Q 024605 25 PAYVRACCEASLKRLDID----CIDLYYQHRVDTKIPIE-VTIGELKKLVEEGK----IKYIGLSEACAATIRRA 90 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~d----yiDl~~lH~~~~~~~~~-~~~~~le~l~~~G~----ir~iGvS~~~~~~l~~~ 90 (265)
.+++++.++...++|+.+ ...+.+--...+..++. .+-++|++|.++|. |-.+|+.+...|.+.++
T Consensus 299 ~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~Ei 373 (485)
T PLN02449 299 KAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEI 373 (485)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHH
Confidence 577888888888898874 23454444334333322 46678888999985 23344445555555443
No 179
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.08 E-value=3e+02 Score=25.23 Aligned_cols=80 Identities=9% Similarity=0.029 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhc--cCCceeeccccCccccchh-hhHHHHHHHhCCeeeeccccccc
Q 024605 58 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHA--VHPITAVQLEWSLWSRDVE-AEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 58 ~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G 134 (265)
+..+...++.+.++.-|....+-....+.+.+++. ..+...+..+-|++..-.+ ..+.+.|+++|+-++.-..++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 55788888888888888888887777766665554 4677888889999876543 68899999999888887777776
Q ss_pred ccc
Q 024605 135 FLS 137 (265)
Q Consensus 135 ~l~ 137 (265)
.+.
T Consensus 192 ~~q 194 (396)
T COG0626 192 VLQ 194 (396)
T ss_pred ccc
Confidence 544
No 180
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=27.63 E-value=2e+02 Score=24.26 Aligned_cols=78 Identities=24% Similarity=0.170 Sum_probs=44.1
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHc----CcccEEeccCC--cHHHHHHHhccCCceeeccccCcc---ccchhhhHHHHH
Q 024605 48 YQHRVDTKIPIEVTIGELKKLVEE----GKIKYIGLSEA--CAATIRRAHAVHPITAVQLEWSLW---SRDVEAEIVPTC 118 (265)
Q Consensus 48 ~lH~~~~~~~~~~~~~~le~l~~~----G~ir~iGvS~~--~~~~l~~~~~~~~~~~~q~~~~~~---~~~~~~~l~~~~ 118 (265)
++..|-.....++.+++|.+|++. |---.|-.-.| +.+.+.+..+..-.+.+|+--==+ +. .-+.+-||
T Consensus 108 ~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~n--tieAvlyC 185 (248)
T PF07476_consen 108 RIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINN--TIEAVLYC 185 (248)
T ss_dssp EEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHH--HHHHHHHH
T ss_pred eeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhh--HHHHHHHH
Confidence 445665555666677777766653 33333333344 567788888877788888753221 12 24678899
Q ss_pred HHhCCeeee
Q 024605 119 RELGIGIVA 127 (265)
Q Consensus 119 ~~~gi~v~a 127 (265)
+++|++...
T Consensus 186 k~~gvgaY~ 194 (248)
T PF07476_consen 186 KEHGVGAYL 194 (248)
T ss_dssp HHTT-EEEE
T ss_pred HhcCCceee
Confidence 999998654
No 181
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.34 E-value=4e+02 Score=22.86 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccC-CC--CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCce
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVD-TK--IPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPIT 97 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~-~~--~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 97 (265)
..++.+. +..+-+.|.++|+++|.+=..=.|. .. ...+++...+.. ...++..++. -....++.+++.. ++
T Consensus 15 ~~~s~e~-K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~ 88 (274)
T cd07938 15 TFIPTED-KIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VD 88 (274)
T ss_pred CCcCHHH-HHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cC
Confidence 3456565 4557777999999999997432332 11 233445554443 2246666665 3556677777653 22
Q ss_pred eeccccCccc--------cc------hhhhHHHHHHHhCCeeee
Q 024605 98 AVQLEWSLWS--------RD------VEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 98 ~~q~~~~~~~--------~~------~~~~l~~~~~~~gi~v~a 127 (265)
.+.+..+.-+ .. .-...+++++++|+.+..
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3322222211 11 014568899999998764
No 182
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.27 E-value=3.9e+02 Score=22.76 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCceee
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAV 99 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 99 (265)
..++.+...+ +-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+.++......+.++.+.+. .++.+
T Consensus 17 ~~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i 88 (262)
T cd07948 17 AFFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGV 88 (262)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEE
Confidence 4567776555 55669999999888874 4332 334555555555454 34455556677777777765 22333
Q ss_pred ccccCc--------cccch------hhhHHHHHHHhCCeeeec
Q 024605 100 QLEWSL--------WSRDV------EAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 100 q~~~~~--------~~~~~------~~~l~~~~~~~gi~v~a~ 128 (265)
-+.++. +.... -.+++.+++++|+.|...
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 332211 11111 146778899999876554
No 183
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=27.15 E-value=3.4e+02 Score=22.03 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHcCcc-cEEeccCCcHHHHHHHhccCC-ceeeccccC------------------ccccchhhhHHHHHHHhCCee
Q 024605 66 KKLVEEGKI-KYIGLSEACAATIRRAHAVHP-ITAVQLEWS------------------LWSRDVEAEIVPTCRELGIGI 125 (265)
Q Consensus 66 e~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~------------------~~~~~~~~~l~~~~~~~gi~v 125 (265)
+.+++.|.. ..+=+++|+.+.+..+.+..+ +....+.+. +-......++++.|+++|+.|
T Consensus 123 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v 202 (229)
T cd08562 123 AALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPADWLELLAALGAVSIHLNYRGLTEEQVKALKDAGYKL 202 (229)
T ss_pred HHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcCHHHHHHHcCCeEEecChhhCCHHHHHHHHHCCCEE
Confidence 334455553 667788888777666654321 111111000 000001246888899999998
Q ss_pred eeccc
Q 024605 126 VAYGP 130 (265)
Q Consensus 126 ~a~sp 130 (265)
.+|..
T Consensus 203 ~~wTv 207 (229)
T cd08562 203 LVYTV 207 (229)
T ss_pred EEEeC
Confidence 88843
No 184
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.91 E-value=29 Score=24.84 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHhcc-------CCCCCHHHHHHHHhhhcc
Q 024605 168 KLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNENIQAL-------SVKLAPEEMAELDSIASA 236 (265)
Q Consensus 168 ~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~~~~-------~~~L~~~~~~~i~~~~~~ 236 (265)
+.++++..+++..|..+..-.. ....+| -....+|.-+.+.|.+.++.. +-+||+.+...|++.+.-
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~-q~~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~ 81 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVV-QKRRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALGV 81 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEE-ecCCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCC
Confidence 3466788888887775432111 111222 247789999999999988744 347999999999999853
No 185
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.89 E-value=3.3e+02 Score=25.05 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=47.8
Q ss_pred HHHHHHHHHcC----cccEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecc
Q 024605 62 IGELKKLVEEG----KIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 62 ~~~le~l~~~G----~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~s 129 (265)
++.+.++++.. .=-..|=|.++...+..++....++++|+...-.-. .....+...|+.+|+.+..+.
T Consensus 280 ~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 280 ILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 55666666653 223455566788888888888888999887765431 123688999999999887753
No 186
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=26.62 E-value=4.5e+02 Score=23.40 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.8
Q ss_pred HHhHcCCCcccE
Q 024605 35 SLKRLDIDCIDL 46 (265)
Q Consensus 35 SL~~Lg~dyiDl 46 (265)
.|+.+|+|||++
T Consensus 232 ~Le~~G~d~i~v 243 (353)
T cd02930 232 ALEAAGADILNT 243 (353)
T ss_pred HHHHcCCCEEEe
Confidence 344455555444
No 187
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=26.58 E-value=1.4e+02 Score=20.55 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Q 024605 164 EHNKKLFERVNEIAMRKGCTPAQLALAWVHH 194 (265)
Q Consensus 164 ~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~ 194 (265)
+...+.+..|.++|++.|++..+++. |+|.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~-YAL~ 77 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCV-YALG 77 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH-HHHH
Confidence 35567788999999999999999763 4443
No 188
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=26.49 E-value=3.1e+02 Score=21.25 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=40.2
Q ss_pred EEEEeecCcccCCCCCCCCCHHHHHHHHHHHHhHcC--CCcccEEEeeccCCC-CCHHHHHHHHHHHHHc
Q 024605 5 VELATKFGISFADGGKIRGDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 71 (265)
Q Consensus 5 ~~I~TK~~~~~~~~~~~~~~~~~i~~~~~~SL~~Lg--~dyiDl~~lH~~~~~-~~~~~~~~~le~l~~~ 71 (265)
+.|+-|++.. ...+..|++-+.++++.+. +...|++++-.+... ....++.+.|..+.+.
T Consensus 52 ~sVSKKvg~~-------AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 52 LAVSRKVDTR-------AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEeccccCc-------chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4555565432 2468888888888887653 234498888877643 4677888888877765
No 189
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=26.25 E-value=5.1e+02 Score=23.70 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-----------hHcCCCcccEEEeeccCCC-----CCHHHHHHHHHHHHHcCcc-cEEecc---CCcHH
Q 024605 26 AYVRACCEASL-----------KRLDIDCIDLYYQHRVDTK-----IPIEVTIGELKKLVEEGKI-KYIGLS---EACAA 85 (265)
Q Consensus 26 ~~i~~~~~~SL-----------~~Lg~dyiDl~~lH~~~~~-----~~~~~~~~~le~l~~~G~i-r~iGvS---~~~~~ 85 (265)
+.+++.+++-. +.+| +|++.||.-..+ ...++..+..++..+.=.+ --|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55776666655 4454 578888876433 2344666666665443333 222222 45777
Q ss_pred HHHHHhccC---CceeeccccCcccc-chhhhHHHHHHHhCCeeeeccccccccc
Q 024605 86 TIRRAHAVH---PITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQGFL 136 (265)
Q Consensus 86 ~l~~~~~~~---~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~G~l 136 (265)
.++++++.. ++-+ |+.-.. + -..+.+.|+++|..|++++|..-+.+
T Consensus 205 VLeaaLe~~~G~kpLL----~SAt~e~N-y~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 205 VLEKAAEVAEGERCLL----ASANLDLD-YEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHhCCCCcEE----EecCchhh-HHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 887776652 3322 222111 2 35899999999999999998876643
No 190
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.08 E-value=1.2e+02 Score=27.55 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHHHHhHcCCCcccEEEeeccCCCC-----------------------CHH--HHHHHHHHHHHcC-cccEEeccC
Q 024605 28 VRACCEASLKRLDIDCIDLYYQHRVDTKI-----------------------PIE--VTIGELKKLVEEG-KIKYIGLSE 81 (265)
Q Consensus 28 i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-----------------------~~~--~~~~~le~l~~~G-~ir~iGvS~ 81 (265)
++++=++.-+-||.+-=++++--.-.... .++ -+++.+..|..+| .|.|+.|-.
T Consensus 46 ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~ 125 (386)
T COG1104 46 VEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS 125 (386)
T ss_pred HHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 34444444456688877777765542110 011 4788888897778 899999986
Q ss_pred C---cHHHHHHHhccC-CceeeccccCccc-cchhhhHHHHHHHhCCeeeeccccccc
Q 024605 82 A---CAATIRRAHAVH-PITAVQLEWSLWS-RDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 82 ~---~~~~l~~~~~~~-~~~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
. +.+++++++... ...++|.--|-.- -.+-.++-+.|+++|+-+..-...+-|
T Consensus 126 ~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~G 183 (386)
T COG1104 126 NGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183 (386)
T ss_pred CCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcC
Confidence 4 678888887642 3344443333221 112368899999998777665555444
No 191
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.08 E-value=4e+02 Score=23.68 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=53.7
Q ss_pred EEeeccCCC-----------CCHHHHHHHHHHHHHc-Cc---ccEEecc--CCcHHHHHHHhc---cCCceeeccccCcc
Q 024605 47 YYQHRVDTK-----------IPIEVTIGELKKLVEE-GK---IKYIGLS--EACAATIRRAHA---VHPITAVQLEWSLW 106 (265)
Q Consensus 47 ~~lH~~~~~-----------~~~~~~~~~le~l~~~-G~---ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~~~ 106 (265)
+-||.++.. .+++++++.++.+.+. |. |+++-+. |.+.+.+.++.+ ..+..++.++||+.
T Consensus 212 iSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~ 291 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPT 291 (343)
T ss_pred EEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCC
Confidence 456777542 2467888888877765 42 4555554 455555555443 34456777899986
Q ss_pred ccc---hh----hhHHHHHHHhCCeeeecccccc
Q 024605 107 SRD---VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 107 ~~~---~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
... +. ..+.+..+++|+.+..+...+.
T Consensus 292 ~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~ 325 (343)
T PRK14469 292 VPGLEKPSRERIERFKEILLKNGIEAEIRREKGS 325 (343)
T ss_pred CccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 532 11 3456667778999888765543
No 192
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=25.80 E-value=1.1e+02 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.0
Q ss_pred ceeeccccCccccchhhhHHHHHHHhCCeeeec
Q 024605 96 ITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 96 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 128 (265)
+.++=-+||+++...+-++.+..++.|+.|+..
T Consensus 186 Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 186 IVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred EEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 444445899988877778999999999998864
No 193
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=25.68 E-value=1.4e+02 Score=26.60 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.4
Q ss_pred hhhHHHHHHHhCCeeee
Q 024605 111 EAEIVPTCRELGIGIVA 127 (265)
Q Consensus 111 ~~~l~~~~~~~gi~v~a 127 (265)
...+.++|++.||.+++
T Consensus 78 ~~~L~~~~~~~Gi~~~s 94 (329)
T TIGR03569 78 HRELKEYCESKGIEFLS 94 (329)
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 36899999999998876
No 194
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.68 E-value=4.5e+02 Score=22.94 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHcCc----ccEEeccCCcHHHHHHH---hccCCceeeccccCccccc---------hhhhHHHHHHH
Q 024605 57 PIEVTIGELKKLVEEGK----IKYIGLSEACAATIRRA---HAVHPITAVQLEWSLWSRD---------VEAEIVPTCRE 120 (265)
Q Consensus 57 ~~~~~~~~le~l~~~G~----ir~iGvS~~~~~~l~~~---~~~~~~~~~q~~~~~~~~~---------~~~~l~~~~~~ 120 (265)
..+.++++++.+++.|. |..+.+...+.+.+.++ +....+.+.-++|.++... ...++++...+
T Consensus 142 ~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~ 221 (331)
T PRK00164 142 RLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAE 221 (331)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHh
Confidence 45678888888888775 22333333333333333 3223344444444443321 01356666666
Q ss_pred hCCeeee
Q 024605 121 LGIGIVA 127 (265)
Q Consensus 121 ~gi~v~a 127 (265)
.|+.+..
T Consensus 222 ~~~~~~~ 228 (331)
T PRK00164 222 RGWTLQP 228 (331)
T ss_pred ccCcccc
Confidence 6654433
No 195
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.45 E-value=1.9e+02 Score=21.98 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLS 80 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS 80 (265)
+.+.+...+.+.+.. .-|...+=..|.+.+++.+.+.|+.+++.|- ..+++.
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 445555555554442 1233333346788889999999999999984 456664
No 196
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=25.41 E-value=82 Score=19.10 Aligned_cols=20 Identities=30% Similarity=0.047 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCHHHHHHHH
Q 024605 172 RVNEIAMRKGCTPAQLALAW 191 (265)
Q Consensus 172 ~l~~ia~~~~~s~~q~al~~ 191 (265)
.+..+.++.|+|..++|-+.
T Consensus 6 ~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 45666667788887777544
No 197
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=25.36 E-value=2.1e+02 Score=21.75 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccC
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE 81 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~ 81 (265)
.+.+.+...+++....- .-..+ .+ ..|.+.+++.+.+.|+.+++.| +..+|+.+
T Consensus 81 v~~~~L~~~L~~~~~~~--~~~~V-~I-~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK--KDTTI-FF-RADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC--CCceE-EE-EcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 44555555555544321 11222 33 4577888999999999999999 45677765
No 198
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=25.31 E-value=3e+02 Score=20.79 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhHcC--CCcccEEEeeccCCC-CCHHHHHHHHHHHHHc
Q 024605 23 GDPAYVRACCEASLKRLD--IDCIDLYYQHRVDTK-IPIEVTIGELKKLVEE 71 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg--~dyiDl~~lH~~~~~-~~~~~~~~~le~l~~~ 71 (265)
..+..|++-+.++++... ..-.|++++-.+... ....++.+.|..+.+.
T Consensus 61 V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 61 VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 467888888888887643 245799999888654 3555666666655443
No 199
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=25.25 E-value=1.1e+02 Score=28.80 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccE
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY 76 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~ 76 (265)
.+...+.+.+.|++||++ +|.+. ..........+.+.+++|+++|.|-.
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 344567788999999997 67542 12222246688999999999999843
No 200
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.10 E-value=3.7e+02 Score=23.69 Aligned_cols=98 Identities=19% Similarity=0.107 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcccEEeccCCcHH----HHHH----HhccC
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAA----TIRR----AHAVH 94 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~ir~iGvS~~~~~----~l~~----~~~~~ 94 (265)
+.+.+.+-++... . ..++..+-+|.-.... +..-.-+.++.|++.|+.-++|+-..... ...+ +.+.+
T Consensus 151 ~~~~L~~ll~~l~-~--i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~G 227 (321)
T TIGR03822 151 SPRRLGDIMARLA-A--IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAG 227 (321)
T ss_pred CHHHHHHHHHHHH-h--CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcC
Confidence 3444444443332 2 3456666666421111 11112245556677785556666543222 2222 22223
Q ss_pred CceeeccccC-ccccch--hhhHHHHHHHhCCe
Q 024605 95 PITAVQLEWS-LWSRDV--EAEIVPTCRELGIG 124 (265)
Q Consensus 95 ~~~~~q~~~~-~~~~~~--~~~l~~~~~~~gi~ 124 (265)
-...+|.-.. -.+.+. -.++++++.+.|+.
T Consensus 228 i~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 228 IPMVSQSVLLRGVNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred CEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence 2223443221 112222 25778888888876
No 201
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=25.01 E-value=2.1e+02 Score=26.10 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-CCceeeccccCccccchh-hhHHHHHHHhC-Ceeeeccccccc
Q 024605 58 IEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDVE-AEIVPTCRELG-IGIVAYGPLGQG 134 (265)
Q Consensus 58 ~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~g-i~v~a~spl~~G 134 (265)
+..+.+.++.+....-|...=+...+.+.++.+++. .+...+..+-|+...-.+ ..+.+.|+++| +.++.-..++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 456777777655554454444444567888887765 556777888888765443 68899999999 999998888776
Q ss_pred cc
Q 024605 135 FL 136 (265)
Q Consensus 135 ~l 136 (265)
.+
T Consensus 184 ~~ 185 (386)
T PF01053_consen 184 YN 185 (386)
T ss_dssp TT
T ss_pred ee
Confidence 44
No 202
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.87 E-value=5.2e+02 Score=23.31 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=54.4
Q ss_pred eeccCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEecc--CCcHHHHHHHhc---cCCceeeccccCcccc
Q 024605 49 QHRVDTK-----------IPIEVTIGELKKLV-EEGK---IKYIGLS--EACAATIRRAHA---VHPITAVQLEWSLWSR 108 (265)
Q Consensus 49 lH~~~~~-----------~~~~~~~~~le~l~-~~G~---ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~~~~~ 108 (265)
||.++++ .+++++++++.... +.|+ |+|+=+. |.+.+.+.++.+ ..+..++.++||++..
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 8988643 23567888887554 4444 4666665 456666655544 3456788899998753
Q ss_pred c----hh----hhHHHHHHHhCCeeeecccccc
Q 024605 109 D----VE----AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 109 ~----~~----~~l~~~~~~~gi~v~a~spl~~ 133 (265)
. +. ....+..+++|+.+..+...+.
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 1 22 2345566778999988877654
No 203
>PRK10508 hypothetical protein; Provisional
Probab=24.83 E-value=1.8e+02 Score=25.77 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHH
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVE 70 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~ 70 (265)
.+++.|.+.|++-.+++|+|.+ + ++... .+.++.++.++.|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~--~~~~~--~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-M--VNGQI--FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-E--EECCC--CCHHHHHHHHHHHHH
Confidence 5899999999999999999887 3 33332 345555666655543
No 204
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=24.80 E-value=3.7e+02 Score=21.69 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=54.4
Q ss_pred HHHHHHHhHcCCCcccEEEeecc-CCCCCHHHHHHHHHHHHHcCcccEEeccC-CcH---HHHHHHhccCCceeeccccC
Q 024605 30 ACCEASLKRLDIDCIDLYYQHRV-DTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACA---ATIRRAHAVHPITAVQLEWS 104 (265)
Q Consensus 30 ~~~~~SL~~Lg~dyiDl~~lH~~-~~~~~~~~~~~~le~l~~~G~ir~iGvS~-~~~---~~l~~~~~~~~~~~~q~~~~ 104 (265)
+.++...+.||+..+ .+.-+ +.+.-.+++.+.|.+++++| +..+-.-. .+- ..++.+++...+. .+.
T Consensus 48 e~~~~~A~~lgipl~---~i~~~~~~e~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~~~~~~gl~----~~~ 119 (194)
T cd01994 48 ELLELQAEAMGIPLI---RIEISGEEEDEVEDLKELLRKLKEEG-VDAVVFGAILSEYQRTRVERVCERLGLE----PLA 119 (194)
T ss_pred HHHHHHHHHcCCcEE---EEeCCCCchHHHHHHHHHHHHHHHcC-CCEEEECccccHHHHHHHHHHHHHcCCE----EEe
Confidence 445666788898653 22212 22222356778888888774 55444332 232 2344444443332 244
Q ss_pred ccccchhhhHHHHHHHhCCeeeeccccccc
Q 024605 105 LWSRDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 105 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
|+-+....+++..+-+.|+..+.-+.-+.|
T Consensus 120 PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~ 149 (194)
T cd01994 120 PLWGRDQEELLREMIEAGFKAIIIKVAAEG 149 (194)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEEeccCC
Confidence 555554578999999999876554444444
No 205
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.67 E-value=80 Score=26.73 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=20.6
Q ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHhcc
Q 024605 188 ALAWVHHQGDDVCPIPGTTKIEQLNENIQAL 218 (265)
Q Consensus 188 al~~~l~~~~v~~~i~G~~~~~~l~en~~~~ 218 (265)
.|+.+.+.+-...+-.|+++.++|++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 5666666666557778999999999999877
No 206
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=24.45 E-value=3.7e+02 Score=21.46 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccE-EeccCCcHHHHHHHhccCCceeeccc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY-IGLSEACAATIRRAHAVHPITAVQLE 102 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~-iGvS~~~~~~l~~~~~~~~~~~~q~~ 102 (265)
+...+.+.++ .+.+.|.|+|-+-....+.... .....+.++++++...+.- +++-........+.+.....+.++++
T Consensus 9 ~~~~~~~~~~-~~~~~g~d~i~~~~~Dg~~~~~-~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 9 DFARLGEEVK-AVEEAGADWIHVDVMDGHFVPN-LTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEcCCCCCCCCC-cccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 3444444443 3456688776665332222111 1134556666665433221 55555555554444445567777776
Q ss_pred cCccccchhhhHHHHHHHhCCee
Q 024605 103 WSLWSRDVEAEIVPTCRELGIGI 125 (265)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~gi~v 125 (265)
...... ....++.+++.|+.+
T Consensus 87 ~~~~~~--~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 87 PEASEH--IHRLLQLIKDLGAKA 107 (210)
T ss_pred cCCchh--HHHHHHHHHHcCCcE
Confidence 543221 246677788888654
No 207
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.40 E-value=3.7e+02 Score=24.17 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=56.2
Q ss_pred EEEeeccCCC-----------CCHHHHHHHHHHHHHcC--cc--cEEecc--CCcHHHHHHHhc---cCCceeeccccCc
Q 024605 46 LYYQHRVDTK-----------IPIEVTIGELKKLVEEG--KI--KYIGLS--EACAATIRRAHA---VHPITAVQLEWSL 105 (265)
Q Consensus 46 l~~lH~~~~~-----------~~~~~~~~~le~l~~~G--~i--r~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~~ 105 (265)
.+-||.|+.+ .+++++.+++++..++. +| -|+=+. |.+.+.+.++.+ ..+..++.++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4778988532 34678888888865432 22 334343 566666555544 3557888999997
Q ss_pred cccc----h-h---hhHHHHHHHhCCeeeecccccc
Q 024605 106 WSRD----V-E---AEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 106 ~~~~----~-~---~~l~~~~~~~gi~v~a~spl~~ 133 (265)
.... + . ....+..+++|+.+..+...+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 4321 1 1 3556677889999999877654
No 208
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=23.99 E-value=1e+02 Score=27.30 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=60.6
Q ss_pred cccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEec--cCCcHHHHHH---Hhc-cC-----------CceeeccccCc
Q 024605 43 CIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGL--SEACAATIRR---AHA-VH-----------PITAVQLEWSL 105 (265)
Q Consensus 43 yiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGv--S~~~~~~l~~---~~~-~~-----------~~~~~q~~~~~ 105 (265)
-||+++.|--...+...-.-.-|..+.+.|+|-++-- |+.....+.. .+. .. +.+..|..+|.
T Consensus 189 DvD~LithP~~~s~~~~~~~~l~~~le~~g~il~~~~~~S~~Ek~~l~~~~s~~~~~~~~mgv~~LPr~~~~~~~~S~n~ 268 (353)
T KOG2534|consen 189 DVDFLITHPGSTSTEAKLLQLLMILLEKKGLLLYYDQLHSCGEKLRLPSRKSALDHFKKFMGVFRLPRQRVDSDQSSWNE 268 (353)
T ss_pred CeeEEEeCCCCCchhhhHHHHHHHHHHhcCeEEEEeeeccccccccccchhhhHhhhhhEEEEEEcCcccccccccccCC
Confidence 4788888854333322223345566778899886643 3332211100 000 01 12222222332
Q ss_pred cccchhhhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHH
Q 024605 106 WSRDVEAEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPA 185 (265)
Q Consensus 106 ~~~~~~~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 185 (265)
-. + -.|++-++.|+.|+-++.|+|- |+.. ..--+.++.+|...|++..
T Consensus 269 ~~-----~--~~~rRvDivv~P~~~~~~alLg--------------------wTGS-----~~FnR~lR~~A~~kG~~l~ 316 (353)
T KOG2534|consen 269 GK-----G--WKARRVDIVVCPYDEFGFALLG--------------------WTGS-----KEFNRDLRRYATHKGFSLD 316 (353)
T ss_pred CC-----C--CceeeeEEEEechHHcceeeee--------------------ecch-----HHHHHHHHHHHHhcCceec
Confidence 11 1 2478889999999999998874 1110 1112357777777888776
Q ss_pred HHHH
Q 024605 186 QLAL 189 (265)
Q Consensus 186 q~al 189 (265)
+-+|
T Consensus 317 ~h~L 320 (353)
T KOG2534|consen 317 EHAL 320 (353)
T ss_pred cccc
Confidence 6443
No 209
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.96 E-value=2.8e+02 Score=24.70 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=50.3
Q ss_pred HHHHHHHHHHc--Ccc-cEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecc
Q 024605 61 TIGELKKLVEE--GKI-KYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYG 129 (265)
Q Consensus 61 ~~~~le~l~~~--G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~s 129 (265)
-++.+.++++. -.| -..|=|.++...+.++++..-++++|+...-.-. .....+.+.|+.+|+.+..+.
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 36777777776 322 3566677888999999988888999987775431 123688999999999988753
No 210
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=23.91 E-value=2.2e+02 Score=24.11 Aligned_cols=54 Identities=15% Similarity=0.024 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcc
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~i 74 (265)
...+.++..+..+-+.+-+++|+|=|=.+..+..-. +.-+++++-+.|+++|-+
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 456788888888888899999998887766554433 356899999999999974
No 211
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.88 E-value=4.1e+02 Score=21.83 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccC-CcHHHHHHHhccC-Cceeecc
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSE-ACAATIRRAHAVH-PITAVQL 101 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~-~~~~~l~~~~~~~-~~~~~q~ 101 (265)
+++...+ +-+.|-+-|+..+-+=+ +. ....+.+++++++..=-.+|.-+ .+.++++.+++.+ .|-
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 4555444 56677777887776655 22 23566677777664445789987 5788888888763 342
Q ss_pred ccCccccchhhhHHHHHHHhCCeeee
Q 024605 102 EWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
.++. .+.+++++|+++||.++.
T Consensus 85 -vsP~---~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 -VSPG---LTPELAKHAQDHGIPIIP 106 (204)
T ss_pred -ECCC---CCHHHHHHHHHcCCcEEC
Confidence 2232 245899999999998877
No 212
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=23.86 E-value=2.3e+02 Score=25.02 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHH-HHHHHHHHHHHcCcccEEec-----cCCcHHHHHHHhccCCcee
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIE-VTIGELKKLVEEGKIKYIGL-----SEACAATIRRAHAVHPITA 98 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~-~~~~~le~l~~~G~ir~iGv-----S~~~~~~l~~~~~~~~~~~ 98 (265)
.+++.+..+...++||...+.+.+.-......+.. .+-+.|++|.++| ++.|=| .....|.+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl----------- 273 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETL----------- 273 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHH-----------
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHH-----------
Confidence 56778888888889998776776665444433332 4778899999999 444433 33333333
Q ss_pred eccccCccccchhhhHHHHHHHhCCeeeecccccc
Q 024605 99 VQLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 99 ~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 133 (265)
|-+ +-+..+.+.+.|+.-..+-|.-.
T Consensus 274 ----~ei-----die~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 274 ----YEI-----DIEYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp ----CCC-----CCHHHHHHHHHTCCEEEE---ST
T ss_pred ----HHH-----HHHHHHHHHHcCCceEEEeCCCC
Confidence 211 23566888999997777766655
No 213
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.84 E-value=4.4e+02 Score=23.56 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCccc-EEeccCCc-HHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeec
Q 024605 62 IGELKKLVEEGKIK-YIGLSEAC-AATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~ 128 (265)
++.+.+++++-.|. ..|=+-++ ...+..+++..-++++|+..+.... .....+...|+.+|+.+...
T Consensus 229 ~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 229 ISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELH 298 (368)
T ss_pred HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 46666777764443 23334456 7788888888788888887776432 12368899999999998664
No 214
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.57 E-value=4.8e+02 Score=23.45 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=54.1
Q ss_pred CCcEEEEeecCcccC-----C---CCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeecc-CCCCCHHHHHHHHHHHHHcC
Q 024605 2 RERVELATKFGISFA-----D---GGKIRGDPAYVRACCEASLKRLDIDCIDLYYQHRV-DTKIPIEVTIGELKKLVEEG 72 (265)
Q Consensus 2 R~~~~I~TK~~~~~~-----~---~~~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~-~~~~~~~~~~~~le~l~~~G 72 (265)
|.-++|||-+|..-. . |.....+.+.|..++...-+. +.++-+.+-.. .+-...+++.++++.+.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhcc
Confidence 566788888776432 1 123457889998888766322 12333333332 22245688999999998764
Q ss_pred cc----cEEeccCCcH-HHHHHHhcc
Q 024605 73 KI----KYIGLSEACA-ATIRRAHAV 93 (265)
Q Consensus 73 ~i----r~iGvS~~~~-~~l~~~~~~ 93 (265)
-. |.|-||+-.. ..+.++...
T Consensus 179 g~~~s~r~ItVsT~G~~~~i~~l~~~ 204 (345)
T PRK14466 179 GYGWSPKRITVSTVGLKKGLKRFLEE 204 (345)
T ss_pred ccCcCCceEEEEcCCCchHHHHHhhc
Confidence 43 6788887654 346665543
No 215
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=23.47 E-value=1.9e+02 Score=21.60 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHH
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRA 90 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~ 90 (265)
+.+.+.|.+++++.|+..|...-++-.+..++....-..+.++.+++ | +-+-.|+.+.+...
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l---g----~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH---G----WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh---C----CCeEEeCHHHHHhc
Confidence 56899999999999999999877777777776655444444444433 2 22333455666443
No 216
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=23.44 E-value=1.2e+02 Score=26.93 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHcCC--CcccEEEeeccCCCCCHHHHHHHHHHHHHcCcc
Q 024605 28 VRACCEASLKRLDI--DCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 28 i~~~~~~SL~~Lg~--dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~i 74 (265)
..+.+.+.+++||+ |+-..+.-+ .....+.+.+.+.+|.++|.|
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~---~~~~~~~v~~~f~~L~~~G~i 134 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTM---DPEYMESVWWVFKQLHEKGLL 134 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECC---CHHHHHHHHHHHHHHHHCCCE
Confidence 45667888999998 554344322 223356799999999999998
No 217
>PRK15456 universal stress protein UspG; Provisional
Probab=23.29 E-value=3.1e+02 Score=20.23 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=26.5
Q ss_pred ccccCccccchhhhHHHHHHHhCCeeeeccccccc
Q 024605 100 QLEWSLWSRDVEAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 100 q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
++...+....+...+++++++.++.++.++.-+.|
T Consensus 83 ~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred ceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC
Confidence 34455555556678999999999999998887655
No 218
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=23.27 E-value=5.9e+02 Score=23.44 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=53.9
Q ss_pred ccEEEeeccCCCCCHHHHHHHHHHHHHcC--cccEEeccC-C-cHHHHHHHhccCCceeeccccCcccc-chhhhHHHHH
Q 024605 44 IDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGLSE-A-CAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTC 118 (265)
Q Consensus 44 iDl~~lH~~~~~~~~~~~~~~le~l~~~G--~ir~iGvS~-~-~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~ 118 (265)
.+++++..|-... -++.+.++.+.- .+.-.|=-. . +...+..+++....+++|+..+-.-. ....++...|
T Consensus 278 ~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA 353 (425)
T TIGR01060 278 YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELA 353 (425)
T ss_pred CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHH
Confidence 4677888776443 366666776654 454333222 2 48889998888888898888776442 1236788999
Q ss_pred HHhCCeeee
Q 024605 119 RELGIGIVA 127 (265)
Q Consensus 119 ~~~gi~v~a 127 (265)
+.+|+.++.
T Consensus 354 ~~~Gi~~vv 362 (425)
T TIGR01060 354 KKAGYTAVI 362 (425)
T ss_pred HHcCCcEEE
Confidence 999998554
No 219
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=23.10 E-value=4.8e+02 Score=22.27 Aligned_cols=107 Identities=14% Similarity=-0.002 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcee
Q 024605 20 KIRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITA 98 (265)
Q Consensus 20 ~~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 98 (265)
...++.++..+-.+-..+-+|+|+|=|=.+..+..-. +..+++++.+.|+++|.+- +=+++.++...+++.+. .+++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~ 147 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAA 147 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCE
Confidence 3467888888888888888999999888887665443 4678999999999999863 33556666666666554 3344
Q ss_pred eccccCccccc---hhhhHHHHHHH-hCCeeeec
Q 024605 99 VQLEWSLWSRD---VEAEIVPTCRE-LGIGIVAY 128 (265)
Q Consensus 99 ~q~~~~~~~~~---~~~~l~~~~~~-~gi~v~a~ 128 (265)
++.-=+++... .+.+++....+ .++.|++-
T Consensus 148 vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 148 VMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 43312222211 01345555555 46777764
No 220
>PRK15005 universal stress protein F; Provisional
Probab=23.04 E-value=3.1e+02 Score=20.11 Aligned_cols=29 Identities=3% Similarity=0.070 Sum_probs=21.5
Q ss_pred cCccccchhhhHHHHHHHhCCeeeecccc
Q 024605 103 WSLWSRDVEAEIVPTCRELGIGIVAYGPL 131 (265)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~gi~v~a~spl 131 (265)
..+....+...+++++.+.++.++....-
T Consensus 88 ~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 88 VHVEEGSPKDRILELAKKIPADMIIIASH 116 (144)
T ss_pred EEEeCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 33444555678999999999988887654
No 221
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.93 E-value=4.6e+02 Score=22.03 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=32.8
Q ss_pred hhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCC
Q 024605 112 AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGC 182 (265)
Q Consensus 112 ~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 182 (265)
+..++.|+..|+.++...+.... +. + -....++...+.++.+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~------~~-------------~-~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDVY------YE-------------E-KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcccc------cc-------------c-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999998875211000 00 0 0123356667778888888988887
No 222
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.50 E-value=4.5e+02 Score=23.62 Aligned_cols=59 Identities=7% Similarity=-0.006 Sum_probs=37.7
Q ss_pred EEeccCCcHHHHHHHhcc-CCceeeccccCccccch-hhhHHHHHHHhCCeeeeccccccc
Q 024605 76 YIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 76 ~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
..-+...+.+.++++++. .+..++....|+...-. -..+.+.|+++|+-++.-..++.+
T Consensus 113 v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 113 VVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred EEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 333333456777776653 34555566677654322 368899999999998877666544
No 223
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.45 E-value=2.3e+02 Score=22.87 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=40.8
Q ss_pred hHcCCCcccEEEeeccCCCCCH-HHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCceeeccccC
Q 024605 37 KRLDIDCIDLYYQHRVDTKIPI-EVTIGELKKLVEEGKIKYIGLS-EACAATIRRAHAVHPITAVQLEWS 104 (265)
Q Consensus 37 ~~Lg~dyiDl~~lH~~~~~~~~-~~~~~~le~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 104 (265)
.++|.|++=+.+-.. ....+ .+....+.++... .+..+||- |.+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~--s~R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPK--SPRYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCC--CCCCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 467887777664332 22222 3344444444333 36778874 778888888888888999998765
No 224
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.41 E-value=44 Score=26.98 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=11.0
Q ss_pred HHHhHcCCCcccEEE
Q 024605 34 ASLKRLDIDCIDLYY 48 (265)
Q Consensus 34 ~SL~~Lg~dyiDl~~ 48 (265)
+.|+.||+||||===
T Consensus 87 qiLealgVD~IDESE 101 (208)
T PF01680_consen 87 QILEALGVDYIDESE 101 (208)
T ss_dssp HHHHHTT-SEEEEET
T ss_pred hhHHHhCCceecccc
Confidence 458999999999543
No 225
>PTZ00081 enolase; Provisional
Probab=22.35 E-value=6.4e+02 Score=23.47 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcC--cccEEec--cCCcHHHHHHHhccCCcee
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEG--KIKYIGL--SEACAATIRRAHAVHPITA 98 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 98 (265)
.+++++.+-+.+.++.+ +++++..|-... -|+.+.+|.+.- .+.-+|= +..++..+..+++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~~----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQD----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCcc----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 56666666666666665 467777765443 366666666653 5544443 2356889999999888899
Q ss_pred eccccCcccc-chhhhHHHHHHHhCCeeee
Q 024605 99 VQLEWSLWSR-DVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 99 ~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a 127 (265)
+|+..|-+.. ....+.+..|+.+|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 9988886542 1236789999999998777
No 226
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.31 E-value=2e+02 Score=25.94 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeec-cCCC-----------CC-HH---HH-HHHHHHHHHcCcccEEeccCCcH
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK-----------IP-IE---VT-IGELKKLVEEGKIKYIGLSEACA 84 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~-~~~~-----------~~-~~---~~-~~~le~l~~~G~ir~iGvS~~~~ 84 (265)
..+.+.+.+.++..+ .|+.++|.+|.+.- |... .+ .+ +. ..+.+.|.+.|. .++++|||.-
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 357777777777766 47899999988862 2110 01 11 11 234455666776 4577887763
No 227
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=22.17 E-value=4.9e+02 Score=22.98 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=52.7
Q ss_pred HhHcCCCcccEEEeeccCCC---------CC--HHHHHHHHHHHHHcC---cccEEeccCCc---HHHHHHHhcc----C
Q 024605 36 LKRLDIDCIDLYYQHRVDTK---------IP--IEVTIGELKKLVEEG---KIKYIGLSEAC---AATIRRAHAV----H 94 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~~---------~~--~~~~~~~le~l~~~G---~ir~iGvS~~~---~~~l~~~~~~----~ 94 (265)
++-|- +.||+|+-.---.+ .+ ++-+-+++..+.+++ .||++-+-++- ...+.+++.. .
T Consensus 209 l~lL~-gvVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlPghlecCTkpI~~wiae~~g~~ 287 (335)
T COG1313 209 LKLLD-GVVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLPGHLECCTKPILRWIAENLGND 287 (335)
T ss_pred HHHhh-ccceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecCCchhhccHHHHHHHHHhCCCC
Confidence 44443 68999984321111 00 234567777777775 57999998872 2334444333 2
Q ss_pred CceeeccccCccccchh-------------hhHHHHHHHhCCee
Q 024605 95 PITAVQLEWSLWSRDVE-------------AEIVPTCRELGIGI 125 (265)
Q Consensus 95 ~~~~~q~~~~~~~~~~~-------------~~l~~~~~~~gi~v 125 (265)
....+|.+|.+.....+ .+.+++|++.|+.-
T Consensus 288 ~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~ 331 (335)
T COG1313 288 VRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTN 331 (335)
T ss_pred eeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCce
Confidence 34567888888543311 46788888888753
No 228
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=22.14 E-value=3.4e+02 Score=25.31 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=53.9
Q ss_pred HhHcCCCcccEEEeeccCC-CCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-------CC-ceeeccccCcc
Q 024605 36 LKRLDIDCIDLYYQHRVDT-KIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV-------HP-ITAVQLEWSLW 106 (265)
Q Consensus 36 L~~Lg~dyiDl~~lH~~~~-~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~-------~~-~~~~q~~~~~~ 106 (265)
.+.||+.|- ++-.|.. .... .+-...+=+.|-...+|....+++++++.+.. .+ |-+|.+. ++-
T Consensus 12 ~~~lgiryP---iiqgpMa~GiSs---~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~-~~~ 84 (444)
T TIGR02814 12 REDYGVRYA---YVAGAMANGIAS---AELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIH-SPS 84 (444)
T ss_pred HHHhCCCCc---EECccccCCCCC---HHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecc-cCC
Confidence 456777664 2223332 1222 23334556789999999999898888765443 24 6666542 322
Q ss_pred ccchhhhHHHHHHHhCCeeeeccc
Q 024605 107 SRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 107 ~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
+...+..+++.|.++++.++..+.
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEecc
Confidence 222245789999999998776553
No 229
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=22.13 E-value=3.3e+02 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Q 024605 172 RVNEIAMRKGC------TPAQLALAWVHHQGDDVCPIPGTTKIEQLNENI 215 (265)
Q Consensus 172 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en~ 215 (265)
.|.++|++.+. ++.++-..|.-... ...+..|+|+|+.+-+.+
T Consensus 226 kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 226 KLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp HHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred HHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 78899999875 67888888887765 568899999999876654
No 230
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=22.02 E-value=1.7e+02 Score=26.62 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeec-cCCC-----------C-CHH---HH-HHHHHHHHHcCcccEEeccCCcH
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHR-VDTK-----------I-PIE---VT-IGELKKLVEEGKIKYIGLSEACA 84 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~-~~~~-----------~-~~~---~~-~~~le~l~~~G~ir~iGvS~~~~ 84 (265)
..+.+.+++.++..++ |+.++|.+|.|.- |... . ..+ +. -.+.+.|.+.|.. .+++|||.-
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeeeC
Confidence 4567888888888876 7999999998863 2110 0 111 12 2344456667764 467887763
No 231
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=22.01 E-value=92 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH---HHhcCCceEecCCCCCHHHHHHHHh
Q 024605 167 KKLFERVNEIAMRKGCTPAQLALAW---VHHQGDDVCPIPGTTKIEQLNENIQ 216 (265)
Q Consensus 167 ~~~~~~l~~ia~~~~~s~~q~al~~---~l~~~~v~~~i~G~~~~~~l~en~~ 216 (265)
.+.+..+..||..|++++.+++..| ++.+..- ..-+...+.+.+++.+.
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~lq 60 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYLQ 60 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHHH
Confidence 4567899999999999999999986 4555431 22355555555555443
No 232
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=22.00 E-value=4.9e+02 Score=22.00 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHH----HHHHHHcCcccEEeccCC------cHHHHHHHhc
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGE----LKKLVEEGKIKYIGLSEA------CAATIRRAHA 92 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~----le~l~~~G~ir~iGvS~~------~~~~l~~~~~ 92 (265)
+.+..+..+....- ..|+|||=+=+.-..+.+.. -+.++. +...-.+.++-..+++.+ ++..+-++..
T Consensus 64 ~~p~~~~~aa~~~a-~~GvdyvKvGl~g~~~~~~a-~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~ 141 (235)
T PF04476_consen 64 MKPGTASLAALGAA-ATGVDYVKVGLFGCKDYDEA-IEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAA 141 (235)
T ss_pred CCchHHHHHHHHHH-hcCCCEEEEecCCCCCHHHH-HHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHH
Confidence 45666665555544 35999988777533222111 122222 222223456778888876 3445555555
Q ss_pred cCCceeeccccC------ccc---cchhhhHHHHHHHhCCe
Q 024605 93 VHPITAVQLEWS------LWS---RDVEAEIVPTCRELGIG 124 (265)
Q Consensus 93 ~~~~~~~q~~~~------~~~---~~~~~~l~~~~~~~gi~ 124 (265)
...|+.+++.-- +++ .....+.++.|+++|+.
T Consensus 142 ~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~ 182 (235)
T PF04476_consen 142 EAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLM 182 (235)
T ss_pred HcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccch
Confidence 566777776432 222 11225678888888875
No 233
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.92 E-value=2.4e+02 Score=23.31 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCc---ccEEeccC-CcHHHHHHHhccC-Ccee
Q 024605 24 DPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK---IKYIGLSE-ACAATIRRAHAVH-PITA 98 (265)
Q Consensus 24 ~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~---ir~iGvS~-~~~~~l~~~~~~~-~~~~ 98 (265)
+.+.... +-+.|..-|+.-+-+=+=+ ....+.+++++++-. =-.+|..+ .+.++++.+++.+ .|-+
T Consensus 23 ~~~~a~~-~~~al~~~Gi~~iEit~~~--------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 23 SKEEALK-ISLAVIKGGIKAIEVTYTN--------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEECCC--------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 4444443 5566677788777665521 124566667765431 13689887 5788888888764 3432
Q ss_pred eccccCccccchhhhHHHHHHHhCCeeee
Q 024605 99 VQLEWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 99 ~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
++ ....+++++|+++|+.++.
T Consensus 94 -----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 94 -----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred -----CC---CCCHHHHHHHHHcCCCEEC
Confidence 33 2246899999999999887
No 234
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.84 E-value=2.9e+02 Score=20.45 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHh
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYIGLSEACAATIRRAH 91 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~ 91 (265)
+-+.+.+.+++++.|+..|.+.-++-.+-..+....-..+.+..+++ | +.+-.|+.+++..+.
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l---~----~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL---G----IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC---T----SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh---C----CCeEEECHHHHhcCC
Confidence 45789999999999999999988888888887665544444433322 2 334445666665444
No 235
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.57 E-value=6.1e+02 Score=22.92 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCceee
Q 024605 21 IRGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGK-IKYIGLSEACAATIRRAHAVHPITAV 99 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~ 99 (265)
..++.+...+ +-+.|.++|+++|.+- +|... ++-++.++.+.+.|. .+.++.+......++.+.+.. ++.+
T Consensus 21 ~~~s~e~k~~-ia~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i 92 (378)
T PRK11858 21 VVFTNEEKLA-IARMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCG-VDAV 92 (378)
T ss_pred CCCCHHHHHH-HHHHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCC-cCEE
Confidence 4577776544 6667999999999974 23221 223566666666554 344444444466677766652 3334
Q ss_pred ccccCcccc--------c------hhhhHHHHHHHhCCeeee
Q 024605 100 QLEWSLWSR--------D------VEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 100 q~~~~~~~~--------~------~~~~l~~~~~~~gi~v~a 127 (265)
.+-+..-+. . .-.+.++++++.|+.|..
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 333322111 0 014678899999987654
No 236
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=21.56 E-value=2e+02 Score=23.47 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcc
Q 024605 25 PAYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 25 ~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~i 74 (265)
.+...+.+.+.+++||+. +|.+.-- ......+.+.++.|.+.|.+
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~~e----s~~~~~~~~~i~~L~~~g~~ 111 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWFGE----SSYLGLMGKVVELLEELGLL 111 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceecch----hhhhhHHHHHHHHHHHCCCE
Confidence 344567788899999997 5876621 11255678888999999987
No 237
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.48 E-value=1.1e+02 Score=28.59 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred cCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccE----EeccCCcHHHHHHHhcc-CCceeeccccCccccchhhh
Q 024605 39 LDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKY----IGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDVEAE 113 (265)
Q Consensus 39 Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~----iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~ 113 (265)
+|++..|==.|.........+++.++++.+++.|.--. +|+-..+.+.+++.++. .......+.++++..-+...
T Consensus 303 iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT~ 382 (472)
T TIGR03471 303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGTE 382 (472)
T ss_pred EcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCcH
Q ss_pred HHHHHHHhCC
Q 024605 114 IVPTCRELGI 123 (265)
Q Consensus 114 l~~~~~~~gi 123 (265)
+.+.+.+.|.
T Consensus 383 l~~~~~~~g~ 392 (472)
T TIGR03471 383 LYDQAKQNGW 392 (472)
T ss_pred HHHHHHHCCC
No 238
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.33 E-value=5.3e+02 Score=22.18 Aligned_cols=54 Identities=11% Similarity=-0.097 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhHc------CCCcccEEEeeccCCCC-CHHHHHHHHHHHHHcCcc
Q 024605 21 IRGDPAYVRACCEASLKRL------DIDCIDLYYQHRVDTKI-PIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 21 ~~~~~~~i~~~~~~SL~~L------g~dyiDl~~lH~~~~~~-~~~~~~~~le~l~~~G~i 74 (265)
..++.++..+-.+-+.+-+ ++++|=|=.+..+..-. +..|++++-+.|+++|-+
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 3556666655555555555 67777776665554443 356899999999999874
No 239
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.33 E-value=5e+02 Score=21.87 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=30.5
Q ss_pred hhHHHHHHHhCCeeeeccccccccccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCC
Q 024605 112 AEIVPTCRELGIGIVAYGPLGQGFLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCT 183 (265)
Q Consensus 112 ~~l~~~~~~~gi~v~a~spl~~G~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s 183 (265)
...+++|++.|+..+...+-... .......++...+.++.+.++|+++|++
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~---------------------~~~~~~~~~~~~~~l~~l~~~a~~~gi~ 138 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYL---------------------GQSKEEGLKRVIEALNELIDKAETKGVV 138 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC---------------------CCCHHHHHHHHHHHHHHHHHhccCCCCE
Confidence 46788888888887654321110 0112455566666777777777777764
No 240
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.30 E-value=5.1e+02 Score=23.06 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=38.5
Q ss_pred ccEEeccCCcHHHHHHHhcc-CCceeeccccCccccch-hhhHHHHHHHhCCeeeeccccccc
Q 024605 74 IKYIGLSEACAATIRRAHAV-HPITAVQLEWSLWSRDV-EAEIVPTCRELGIGIVAYGPLGQG 134 (265)
Q Consensus 74 ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 134 (265)
++..-+...+.+.+++++.. .+..++..+.|+..... -.++.+.|+++|+-++.-..++.+
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~ 178 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTP 178 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 33333444456777776643 34555556778754322 368999999999988886666443
No 241
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=21.23 E-value=3.4e+02 Score=25.06 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc---CCceeeccccCccccchhhhHHHHHHHhC--Ceeeeccccccc
Q 024605 60 VTIGELKKLVEEGKIKYIGLSEACAATIRRAHAV---HPITAVQLEWSLWSRDVEAEIVPTCRELG--IGIVAYGPLGQG 134 (265)
Q Consensus 60 ~~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~g--i~v~a~spl~~G 134 (265)
-+++++.+..++++ ++...+.+.+-..++. ..+|++-++..+ .++.++.+++.+ ++++++. +.
T Consensus 122 PiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSRG---Gs 189 (431)
T PRK13352 122 PIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSRG---GS 189 (431)
T ss_pred hHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecCC---HH
Confidence 46677777765554 6777788877666554 456665555544 456777777543 5666542 22
Q ss_pred cccCCCCcccccccchhhhcCCcchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Q 024605 135 FLSSGPKLVESFSKYDFRKCMPKFQAENLEHNKKLFERVNEIAMRKGCTPAQLALAWVHHQGDDVCPIPGTTKIEQLNEN 214 (265)
Q Consensus 135 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~en 214 (265)
++. ++=.. ..+-+|. .+..+.+.+|+++|.+|++ |..+.-..+|.-++...|+.|.
T Consensus 190 ~~~-~WM~~-------n~~ENPl---------ye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El 245 (431)
T PRK13352 190 FLA-AWMLH-------NNKENPL---------YEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQEL 245 (431)
T ss_pred HHH-HHHHH-------cCCcCch---------HHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHH
Confidence 222 11000 0112343 3346689999999998642 3333333456677777787776
Q ss_pred H
Q 024605 215 I 215 (265)
Q Consensus 215 ~ 215 (265)
+
T Consensus 246 ~ 246 (431)
T PRK13352 246 I 246 (431)
T ss_pred H
Confidence 5
No 242
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.23 E-value=3.7e+02 Score=26.09 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeeccCCC--CCHHHHHHHHHHHHHcC-cccE---------EeccCCcHHHHHH
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQHRVDTK--IPIEVTIGELKKLVEEG-KIKY---------IGLSEACAATIRR 89 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~--~~~~~~~~~le~l~~~G-~ir~---------iGvS~~~~~~l~~ 89 (265)
.++.+.... +-..|.+.|++.|.+.==...+.. ...++.|+.|..+++.. .++. +|.++++-+.++.
T Consensus 22 r~~t~d~l~-ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~ 100 (592)
T PRK09282 22 RMRTEDMLP-IAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEK 100 (592)
T ss_pred cCCHHHHHH-HHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHH
Confidence 455555444 666788899999999400000100 11236789999988773 2332 3445555444333
Q ss_pred Hhc---cCCceeeccccCccccchhhhHHHHHHHhCCeeee
Q 024605 90 AHA---VHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVA 127 (265)
Q Consensus 90 ~~~---~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 127 (265)
.++ ...++++.+-.++-+.+--...++++++.|..+.+
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEE
Confidence 222 24566666655554332235678889999987653
No 243
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=21.04 E-value=55 Score=12.24 Aligned_cols=6 Identities=50% Similarity=1.508 Sum_probs=3.5
Q ss_pred CCCCCC
Q 024605 257 PPLSSW 262 (265)
Q Consensus 257 ~~~~~~ 262 (265)
|+++||
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 455666
No 244
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=20.74 E-value=48 Score=23.07 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcccEE
Q 024605 40 DIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKIKYI 77 (265)
Q Consensus 40 g~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~ir~i 77 (265)
|.|-|| +++.....-...+++...-..|.+.|.|+++
T Consensus 32 GsdlVd-WL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV 68 (84)
T cd04438 32 GSDLVD-WLLSHVEGLTDRREARKYASSLLKLGYIRHT 68 (84)
T ss_pred chHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCcEEec
Confidence 555555 3333333334567888888999999999886
No 245
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=20.73 E-value=5.6e+02 Score=22.23 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEee-ccCCCC-C-HHH---HHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCc
Q 024605 23 GDPAYVRACCEASLKRLDIDCIDLYYQH-RVDTKI-P-IEV---TIGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPI 96 (265)
Q Consensus 23 ~~~~~i~~~~~~SL~~Lg~dyiDl~~lH-~~~~~~-~-~~~---~~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 96 (265)
++.+.+.+..++.++ -|-|-||+=--- +|.... + .+| +...++.+++.-.+ -|.|-++.++.++++++.+.-
T Consensus 35 ~~~~~a~~~a~~~~~-~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMIN-AGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 456666666665554 388888886322 243321 1 223 66677777765233 488889999999999987532
Q ss_pred eeeccccCccccchhhhHHHHHHHhCCeeeeccc
Q 024605 97 TAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYGP 130 (265)
Q Consensus 97 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 130 (265)
-+|=+ .. +. +.++++.|.+.|..++.+.-
T Consensus 113 iINDI-~g-~~---d~~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 113 IINDI-RS-LS---EPGALEAAAETGLPVCLMHM 141 (282)
T ss_pred EEEEC-CC-CC---CHHHHHHHHHcCCCEEEEcC
Confidence 22222 12 21 24678889999999888753
No 246
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=20.57 E-value=4.6e+02 Score=21.10 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCcccEEeccCCcH--HHHHHHhccCCceeeccccCcccc--------chhhhHHHHHHHhCCeeeec
Q 024605 59 EVTIGELKKLVEEGKIKYIGLSEACA--ATIRRAHAVHPITAVQLEWSLWSR--------DVEAEIVPTCRELGIGIVAY 128 (265)
Q Consensus 59 ~~~~~~le~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~l~~~~~~~gi~v~a~ 128 (265)
..+.+.++.+++.|- .+.+.++.. ..+..+. ..+++.+-+..+.+.. ..-+.++..|+..|+.|++-
T Consensus 133 ~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 133 ESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 345588999999996 355555432 2233332 2346666555444321 12257889999999998874
No 247
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.45 E-value=6e+02 Score=22.63 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCcc---cEEecc--CCcHHHHHH---HhccCCceeeccccCccccch----h---hhHHHHH--H
Q 024605 57 PIEVTIGELKKLVEEGKI---KYIGLS--EACAATIRR---AHAVHPITAVQLEWSLWSRDV----E---AEIVPTC--R 119 (265)
Q Consensus 57 ~~~~~~~~le~l~~~G~i---r~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~~~~~~~~----~---~~l~~~~--~ 119 (265)
+.+++.+++..+.+.|+- +++=+. |.+.+.+++ ++...+..++.++||+..... . ....+.. +
T Consensus 229 ~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f~~~l~~~ 308 (336)
T PRK14470 229 PLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAFRDALARE 308 (336)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 467888998888876542 343333 345555444 444455688899999854321 1 2344555 3
Q ss_pred HhCCeeeecccccc
Q 024605 120 ELGIGIVAYGPLGQ 133 (265)
Q Consensus 120 ~~gi~v~a~spl~~ 133 (265)
++|+.+..+...+.
T Consensus 309 ~~g~~~~~R~~~G~ 322 (336)
T PRK14470 309 LPGTPVVRRYSGGQ 322 (336)
T ss_pred cCCeEEEEECCCCC
Confidence 56888888776654
No 248
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.40 E-value=1.4e+02 Score=26.10 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeeccCCCCCHHHHHHHHHHHHHcCcc
Q 024605 26 AYVRACCEASLKRLDIDCIDLYYQHRVDTKIPIEVTIGELKKLVEEGKI 74 (265)
Q Consensus 26 ~~i~~~~~~SL~~Lg~dyiDl~~lH~~~~~~~~~~~~~~le~l~~~G~i 74 (265)
+...+.+.+.+++||+. +|....-.-....-.+-+.+.+..|.++|.|
T Consensus 69 ~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 69 EYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 55667789999999995 5742111111111234577788999999998
No 249
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.24 E-value=5.3e+02 Score=21.72 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCceeeccccCcccc-chhhhHHHHHHHhCCeeeecccccc
Q 024605 62 IGELKKLVEEGKIKYIGLSEACAATIRRAHAVHPITAVQLEWSLWSR-DVEAEIVPTCRELGIGIVAYGPLGQ 133 (265)
Q Consensus 62 ~~~le~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~l~~~~~~~gi~v~a~spl~~ 133 (265)
++.+.++. .+.=-..|=|-++...+..+++...++++|+.-..... .....+.+.|+.+|+.+...+-+.+
T Consensus 167 ~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es 238 (263)
T cd03320 167 LAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALES 238 (263)
T ss_pred HHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence 45555555 33333556566666777777777778888877665431 1236789999999999887654443
No 250
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.14 E-value=1.9e+02 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEee
Q 024605 22 RGDPAYVRACCEASLKRLDIDCIDLYYQH 50 (265)
Q Consensus 22 ~~~~~~i~~~~~~SL~~Lg~dyiDl~~lH 50 (265)
..+.+.+++.++..++ |+.++|++|.|.
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~ 253 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALN 253 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 3467777777666554 899999999876
No 251
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.00 E-value=5.2e+02 Score=23.43 Aligned_cols=64 Identities=9% Similarity=-0.061 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCc----eeeccccCccc-cchhhhHHHHHHHhCCee
Q 024605 62 IGELKKLVEEGKIK-YIGLSEACAATIRRAHAVHPI----TAVQLEWSLWS-RDVEAEIVPTCRELGIGI 125 (265)
Q Consensus 62 ~~~le~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~----~~~q~~~~~~~-~~~~~~l~~~~~~~gi~v 125 (265)
++.+.++++...+- ..|=|-++...+..+++..-. +++|+...-.- -.....+.+.|+.+|+.+
T Consensus 245 ~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~ 314 (385)
T cd03326 245 YALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSR 314 (385)
T ss_pred HHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCC
Confidence 56677777765553 666677888888888877554 88888766533 112368889999999874
Done!