Query 024606
Match_columns 265
No_of_seqs 227 out of 1637
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02828 formyltetrahydrofolat 100.0 6E-55 1.3E-59 398.1 26.3 226 10-265 42-268 (268)
2 TIGR00655 PurU formyltetrahydr 100.0 1.1E-51 2.3E-56 379.4 24.7 225 2-265 48-280 (280)
3 PRK13010 purU formyltetrahydro 100.0 7.4E-51 1.6E-55 375.2 24.4 219 8-265 66-289 (289)
4 PRK13011 formyltetrahydrofolat 100.0 3.5E-50 7.5E-55 370.4 24.8 218 9-265 63-285 (286)
5 PRK06027 purU formyltetrahydro 100.0 3.6E-50 7.8E-55 370.3 24.5 218 9-265 63-285 (286)
6 COG0299 PurN Folate-dependent 100.0 8.9E-50 1.9E-54 346.4 23.3 192 39-264 1-198 (200)
7 PLN02331 phosphoribosylglycina 100.0 1.6E-46 3.6E-51 331.7 25.5 191 40-264 1-202 (207)
8 TIGR00639 PurN phosphoribosylg 100.0 2.6E-46 5.6E-51 326.4 24.7 183 39-254 1-189 (190)
9 PRK05647 purN phosphoribosylgl 100.0 4.2E-46 9E-51 327.4 24.4 188 38-258 1-194 (200)
10 KOG3076 5'-phosphoribosylglyci 100.0 3.4E-44 7.3E-49 308.7 21.0 195 36-263 4-206 (206)
11 PLN02285 methionyl-tRNA formyl 100.0 2.1E-43 4.5E-48 331.6 22.9 197 35-261 3-212 (334)
12 COG0788 PurU Formyltetrahydrof 100.0 9.1E-44 2E-48 320.2 19.5 218 9-265 64-286 (287)
13 COG0223 Fmt Methionyl-tRNA for 100.0 6.2E-43 1.3E-47 323.9 20.5 186 38-262 1-197 (307)
14 PF00551 Formyl_trans_N: Formy 100.0 1.5E-41 3.2E-46 293.0 19.5 175 39-246 1-181 (181)
15 PRK06988 putative formyltransf 100.0 2.4E-40 5.3E-45 308.1 22.2 184 38-260 2-193 (312)
16 PRK00005 fmt methionyl-tRNA fo 100.0 3.4E-40 7.4E-45 306.3 22.2 184 39-261 1-195 (309)
17 TIGR00460 fmt methionyl-tRNA f 100.0 5E-40 1.1E-44 306.0 22.2 184 39-261 1-195 (313)
18 PRK08125 bifunctional UDP-gluc 100.0 2.3E-37 5.1E-42 312.1 22.7 185 39-262 1-193 (660)
19 PRK07579 hypothetical protein; 100.0 3.8E-35 8.3E-40 264.6 17.7 175 38-260 1-178 (245)
20 KOG3082 Methionyl-tRNA formylt 99.9 7.2E-24 1.6E-28 194.3 8.5 173 39-252 7-190 (338)
21 KOG2452 Formyltetrahydrofolate 99.9 1.2E-21 2.5E-26 188.5 9.8 182 39-254 1-188 (881)
22 PF00185 OTCace: Aspartate/orn 95.8 0.027 5.8E-07 47.8 6.5 118 38-182 2-125 (158)
23 PLN02342 ornithine carbamoyltr 95.0 0.19 4.1E-06 48.2 10.0 119 38-183 194-313 (348)
24 PRK04284 ornithine carbamoyltr 94.5 0.39 8.4E-06 45.7 10.7 121 38-183 155-280 (332)
25 PRK02255 putrescine carbamoylt 93.5 0.67 1.4E-05 44.3 10.2 118 38-182 154-277 (338)
26 TIGR00658 orni_carb_tr ornithi 93.0 1.1 2.3E-05 42.1 10.6 60 108-182 210-269 (304)
27 PRK00779 ornithine carbamoyltr 92.7 1.1 2.4E-05 42.1 10.2 118 39-183 153-271 (304)
28 COG2102 Predicted ATPases of P 92.4 1.2 2.6E-05 40.3 9.6 79 39-120 1-92 (223)
29 PRK01713 ornithine carbamoyltr 92.2 1.2 2.6E-05 42.4 9.9 121 38-183 156-281 (334)
30 PRK08192 aspartate carbamoyltr 91.6 3.1 6.7E-05 39.7 12.0 118 38-182 159-279 (338)
31 PRK14805 ornithine carbamoyltr 91.4 1.7 3.8E-05 40.8 9.9 117 38-183 147-267 (302)
32 PLN02527 aspartate carbamoyltr 91.2 2.2 4.8E-05 40.1 10.5 118 38-182 151-269 (306)
33 PRK13814 pyrB aspartate carbam 91.2 1.3 2.8E-05 41.8 8.9 118 49-183 136-270 (310)
34 PRK08300 acetaldehyde dehydrog 91.2 0.73 1.6E-05 43.4 7.2 72 37-122 3-78 (302)
35 TIGR00670 asp_carb_tr aspartat 90.7 2.3 4.9E-05 40.0 10.0 116 38-183 150-267 (301)
36 PRK03515 ornithine carbamoyltr 90.2 2.4 5.3E-05 40.4 9.8 121 38-183 156-281 (336)
37 TIGR01761 thiaz-red thiazoliny 89.7 0.63 1.4E-05 44.5 5.5 52 37-95 2-53 (343)
38 TIGR00290 MJ0570_dom MJ0570-re 89.3 3.1 6.7E-05 37.5 9.3 77 39-119 1-90 (223)
39 PRK02102 ornithine carbamoyltr 88.8 3.9 8.5E-05 39.0 10.1 115 38-176 155-274 (331)
40 PF01902 ATP_bind_4: ATP-bindi 88.8 1.8 3.9E-05 38.8 7.4 77 39-119 1-90 (218)
41 PRK04523 N-acetylornithine car 88.7 5.7 0.00012 37.9 11.2 76 85-182 223-299 (335)
42 TIGR00289 conserved hypothetic 88.7 4.3 9.3E-05 36.6 9.8 77 39-119 1-90 (222)
43 PF01408 GFO_IDH_MocA: Oxidore 88.7 0.98 2.1E-05 35.1 5.1 68 39-124 1-72 (120)
44 TIGR03316 ygeW probable carbam 86.3 17 0.00037 35.1 12.9 131 38-183 170-320 (357)
45 TIGR03215 ac_ald_DH_ac acetald 86.2 4.3 9.3E-05 37.9 8.5 51 38-96 1-53 (285)
46 PRK13376 pyrB bifunctional asp 85.6 8.5 0.00018 39.0 10.8 123 38-183 174-299 (525)
47 PRK12562 ornithine carbamoyltr 84.9 9.2 0.0002 36.5 10.2 120 38-182 156-280 (334)
48 cd01994 Alpha_ANH_like_IV This 84.7 9.1 0.0002 33.5 9.5 56 40-98 1-65 (194)
49 COG0394 Wzb Protein-tyrosine-p 82.8 2.4 5.2E-05 35.3 4.8 81 37-125 1-87 (139)
50 PRK10696 tRNA 2-thiocytidine b 82.2 5.8 0.00013 35.9 7.5 64 35-98 26-94 (258)
51 PRK05447 1-deoxy-D-xylulose 5- 82.0 14 0.00031 36.0 10.4 55 38-98 1-57 (385)
52 COG0673 MviM Predicted dehydro 82.0 6.7 0.00015 36.0 7.9 71 37-122 2-75 (342)
53 PRK14804 ornithine carbamoyltr 80.5 15 0.00032 34.6 9.8 65 108-183 212-276 (311)
54 PF10686 DUF2493: Protein of u 79.8 5.6 0.00012 29.5 5.3 59 38-99 3-65 (71)
55 PRK11891 aspartate carbamoyltr 79.7 20 0.00042 35.6 10.6 114 38-176 241-356 (429)
56 PRK13304 L-aspartate dehydroge 79.1 7.4 0.00016 35.5 7.1 69 38-122 1-69 (265)
57 TIGR03590 PseG pseudaminic aci 78.7 20 0.00044 32.7 9.9 80 40-125 1-91 (279)
58 PF10727 Rossmann-like: Rossma 77.0 2.1 4.6E-05 35.2 2.6 36 35-75 7-43 (127)
59 PRK07200 aspartate/ornithine c 76.8 37 0.00079 33.3 11.5 129 38-181 187-334 (395)
60 PF03807 F420_oxidored: NADP o 76.2 13 0.00028 27.7 6.6 69 40-123 1-70 (96)
61 COG1921 SelA Selenocysteine sy 76.1 14 0.0003 36.2 8.3 80 40-122 134-221 (395)
62 PLN02696 1-deoxy-D-xylulose-5- 75.8 11 0.00024 37.5 7.7 55 37-97 56-112 (454)
63 COG0078 ArgF Ornithine carbamo 74.9 41 0.00089 32.0 10.8 120 37-182 152-275 (310)
64 PRK07634 pyrroline-5-carboxyla 74.5 10 0.00023 33.3 6.6 69 38-122 4-74 (245)
65 PRK13302 putative L-aspartate 73.8 8.8 0.00019 35.2 6.1 69 38-122 6-75 (271)
66 PF01171 ATP_bind_3: PP-loop f 72.7 16 0.00035 31.0 7.1 58 40-98 1-65 (182)
67 PRK10126 tyrosine phosphatase; 72.7 9.6 0.00021 31.6 5.5 80 38-124 2-85 (147)
68 TIGR01921 DAP-DH diaminopimela 72.3 24 0.00052 33.7 8.7 34 38-75 3-37 (324)
69 PRK00726 murG undecaprenyldiph 71.0 16 0.00036 33.6 7.3 80 38-124 1-101 (357)
70 PRK14664 tRNA-specific 2-thiou 70.3 14 0.00031 35.6 6.9 58 36-98 3-62 (362)
71 PF02601 Exonuc_VII_L: Exonucl 70.2 44 0.00094 31.0 9.9 93 32-125 8-116 (319)
72 PRK00856 pyrB aspartate carbam 70.1 24 0.00052 33.2 8.2 88 81-182 172-267 (305)
73 COG2910 Putative NADH-flavin r 68.9 19 0.00042 32.1 6.7 33 39-76 1-35 (211)
74 PLN03139 formate dehydrogenase 68.4 1.2E+02 0.0026 29.5 13.7 163 38-253 199-367 (386)
75 TIGR03693 ocin_ThiF_like putat 66.3 26 0.00056 36.4 8.0 78 37-123 128-213 (637)
76 PF04007 DUF354: Protein of un 66.1 44 0.00095 31.9 9.2 77 39-122 1-91 (335)
77 PF03054 tRNA_Me_trans: tRNA m 65.9 14 0.00031 35.5 5.9 55 39-98 1-69 (356)
78 PRK07574 formate dehydrogenase 65.9 1.4E+02 0.0029 29.2 12.6 160 39-253 193-360 (385)
79 cd01992 PP-ATPase N-terminal d 65.5 68 0.0015 26.7 9.4 57 40-97 1-64 (185)
80 COG1570 XseA Exonuclease VII, 64.8 55 0.0012 32.6 9.7 93 32-125 129-234 (440)
81 TIGR02689 ars_reduc_gluta arse 64.3 13 0.00027 30.0 4.5 75 39-122 1-79 (126)
82 COG0345 ProC Pyrroline-5-carbo 64.2 30 0.00066 32.0 7.5 68 38-122 1-70 (266)
83 PLN02256 arogenate dehydrogena 64.1 25 0.00054 32.9 7.0 92 9-122 7-100 (304)
84 TIGR00243 Dxr 1-deoxy-D-xylulo 63.3 48 0.001 32.5 8.9 55 38-98 1-57 (389)
85 PRK10660 tilS tRNA(Ile)-lysidi 62.3 35 0.00076 33.6 8.0 62 37-98 14-82 (436)
86 PRK13600 putative ribosomal pr 61.5 15 0.00032 28.3 4.1 44 53-100 19-64 (84)
87 COG0482 TrmU Predicted tRNA(5- 61.0 26 0.00057 33.9 6.6 57 37-98 2-70 (356)
88 TIGR02432 lysidine_TilS_N tRNA 60.2 31 0.00067 29.1 6.4 58 40-98 1-65 (189)
89 COG2085 Predicted dinucleotide 60.2 39 0.00084 30.4 7.1 66 38-121 1-67 (211)
90 PRK13530 arsenate reductase; P 60.0 13 0.00028 30.4 3.9 76 38-122 3-82 (133)
91 PRK04148 hypothetical protein; 60.0 1E+02 0.0022 25.7 9.7 100 37-161 16-115 (134)
92 PRK13602 putative ribosomal pr 59.5 47 0.001 25.0 6.6 53 53-112 17-69 (82)
93 PRK06683 hypothetical protein; 59.0 20 0.00043 27.3 4.4 45 53-99 17-61 (82)
94 PRK08306 dipicolinate synthase 58.9 52 0.0011 30.5 8.1 66 37-121 151-217 (296)
95 TIGR01133 murG undecaprenyldip 58.7 39 0.00084 30.6 7.2 53 39-98 1-56 (348)
96 COG1064 AdhP Zn-dependent alco 58.4 27 0.00059 33.6 6.2 89 17-121 146-236 (339)
97 TIGR03590 PseG pseudaminic aci 58.3 82 0.0018 28.7 9.2 100 15-123 149-250 (279)
98 PTZ00345 glycerol-3-phosphate 57.6 30 0.00065 33.4 6.4 22 37-58 10-32 (365)
99 COG4569 MhpF Acetaldehyde dehy 57.4 51 0.0011 30.1 7.4 52 37-95 3-56 (310)
100 PRK11391 etp phosphotyrosine-p 57.3 24 0.00052 29.2 5.1 79 39-123 3-84 (144)
101 PLN02928 oxidoreductase family 57.3 1.6E+02 0.0035 28.0 11.3 113 107-253 219-338 (347)
102 PF00448 SRP54: SRP54-type pro 56.9 66 0.0014 28.0 8.0 83 40-125 3-94 (196)
103 KOG2741 Dimeric dihydrodiol de 56.4 31 0.00067 33.3 6.2 53 35-93 3-56 (351)
104 cd00115 LMWPc Substituted upda 55.1 17 0.00038 29.4 3.8 82 39-125 1-87 (141)
105 PRK15409 bifunctional glyoxyla 54.8 1.9E+02 0.0041 27.2 13.7 161 38-253 145-312 (323)
106 COG0111 SerA Phosphoglycerate 54.5 2E+02 0.0043 27.3 11.8 140 80-253 154-309 (324)
107 PRK14561 hypothetical protein; 54.2 28 0.00061 30.3 5.2 54 39-98 1-57 (194)
108 PRK14665 mnmA tRNA-specific 2- 54.2 61 0.0013 31.2 7.9 59 36-99 3-68 (360)
109 TIGR02853 spore_dpaA dipicolin 53.7 1.4E+02 0.0031 27.6 10.1 105 38-194 151-256 (287)
110 PRK15469 ghrA bifunctional gly 53.4 80 0.0017 29.6 8.4 113 107-253 183-300 (312)
111 PRK00286 xseA exodeoxyribonucl 52.9 1.1E+02 0.0024 29.8 9.7 93 32-125 129-233 (438)
112 PRK11880 pyrroline-5-carboxyla 52.7 48 0.001 29.5 6.7 110 38-176 2-119 (267)
113 COG3007 Uncharacterized paraqu 52.5 1.2E+02 0.0026 29.2 9.2 94 32-128 35-147 (398)
114 smart00226 LMWPc Low molecular 52.4 39 0.00084 27.2 5.5 67 52-124 15-81 (140)
115 PF07991 IlvN: Acetohydroxy ac 52.3 50 0.0011 28.6 6.3 61 38-120 4-66 (165)
116 PLN02819 lysine-ketoglutarate 52.1 46 0.001 36.7 7.4 79 36-122 567-656 (1042)
117 cd05017 SIS_PGI_PMI_1 The memb 51.9 88 0.0019 24.5 7.4 54 39-100 44-99 (119)
118 KOG2805 tRNA (5-methylaminomet 51.8 56 0.0012 31.5 7.0 59 35-98 2-74 (377)
119 PRK07714 hypothetical protein; 51.3 72 0.0016 24.7 6.6 52 53-113 24-77 (100)
120 PRK07027 cobalamin biosynthesi 51.2 43 0.00094 27.3 5.6 60 39-98 1-67 (126)
121 PRK08410 2-hydroxyacid dehydro 50.7 2.1E+02 0.0046 26.6 12.3 103 82-214 159-270 (311)
122 PRK13601 putative L7Ae-like ri 50.3 33 0.00071 26.1 4.4 44 53-98 14-57 (82)
123 TIGR00237 xseA exodeoxyribonuc 50.1 1.2E+02 0.0027 29.7 9.5 93 32-125 123-228 (432)
124 COG4693 PchG Oxidoreductase (N 49.9 30 0.00064 32.9 4.8 50 39-96 5-55 (361)
125 PRK10017 colanic acid biosynth 49.9 49 0.0011 32.5 6.7 38 39-77 1-44 (426)
126 COG3967 DltE Short-chain dehyd 49.6 92 0.002 28.5 7.7 156 42-211 7-188 (245)
127 PRK06487 glycerate dehydrogena 49.5 2.2E+02 0.0047 26.7 10.7 139 81-253 161-311 (317)
128 PRK05601 DNA polymerase III su 49.5 74 0.0016 31.1 7.6 64 39-113 298-368 (377)
129 PRK06552 keto-hydroxyglutarate 49.2 87 0.0019 27.9 7.6 67 42-120 68-135 (213)
130 cd01993 Alpha_ANH_like_II This 49.0 85 0.0018 25.9 7.2 59 40-98 1-67 (185)
131 PRK10206 putative oxidoreducta 48.9 33 0.00071 32.3 5.1 69 38-122 1-72 (344)
132 COG0240 GpsA Glycerol-3-phosph 48.6 41 0.0009 32.2 5.7 74 38-122 1-79 (329)
133 PF01210 NAD_Gly3P_dh_N: NAD-d 48.0 12 0.00026 31.2 1.8 74 40-124 1-79 (157)
134 PF08660 Alg14: Oligosaccharid 47.1 1.1E+02 0.0025 26.1 7.8 46 42-88 2-49 (170)
135 PF00205 TPP_enzyme_M: Thiamin 47.1 26 0.00056 28.1 3.6 44 81-124 29-87 (137)
136 PRK13243 glyoxylate reductase; 47.0 2.5E+02 0.0055 26.4 13.2 158 38-253 150-315 (333)
137 PF01890 CbiG_C: Cobalamin syn 47.0 70 0.0015 25.8 6.1 55 44-98 6-65 (121)
138 PRK12446 undecaprenyldiphospho 46.4 90 0.0019 29.5 7.7 54 38-98 1-57 (352)
139 PLN02688 pyrroline-5-carboxyla 46.1 76 0.0016 28.2 6.9 65 39-122 1-69 (266)
140 PRK01018 50S ribosomal protein 46.0 41 0.00088 26.3 4.4 53 53-113 22-76 (99)
141 PRK13820 argininosuccinate syn 45.8 71 0.0015 31.3 7.0 58 38-99 2-64 (394)
142 PRK06407 ornithine cyclodeamin 45.8 1.1E+02 0.0024 28.5 8.0 101 38-185 117-223 (301)
143 TIGR03679 arCOG00187 arCOG0018 45.6 1.6E+02 0.0035 26.0 8.8 53 43-99 2-64 (218)
144 PRK03868 glucose-6-phosphate i 45.5 95 0.0021 30.5 7.9 61 36-100 109-175 (410)
145 PRK00143 mnmA tRNA-specific 2- 44.3 99 0.0022 29.4 7.6 55 39-98 1-70 (346)
146 KOG0781 Signal recognition par 44.2 1.5E+02 0.0033 30.3 9.0 100 32-142 372-515 (587)
147 PRK09536 btuD corrinoid ABC tr 44.2 1.6E+02 0.0034 28.8 9.1 71 48-124 275-348 (402)
148 PRK07679 pyrroline-5-carboxyla 44.1 69 0.0015 29.0 6.4 67 39-122 4-73 (279)
149 PRK05583 ribosomal protein L7A 44.1 1.5E+02 0.0032 23.4 7.4 57 53-118 23-81 (104)
150 PRK08335 translation initiatio 43.8 1.1E+02 0.0024 28.5 7.7 64 48-120 119-183 (275)
151 TIGR03759 conj_TIGR03759 integ 43.7 76 0.0017 28.4 6.2 59 36-98 107-166 (200)
152 PLN02306 hydroxypyruvate reduc 43.5 3.2E+02 0.0069 26.6 11.3 114 107-253 229-347 (386)
153 PRK07066 3-hydroxybutyryl-CoA 43.2 82 0.0018 29.8 6.8 124 108-257 77-214 (321)
154 PF02844 GARS_N: Phosphoribosy 42.4 16 0.00035 29.0 1.7 10 39-48 1-10 (100)
155 TIGR00177 molyb_syn molybdenum 42.4 79 0.0017 25.9 5.9 44 81-125 30-77 (144)
156 PRK05472 redox-sensing transcr 41.9 79 0.0017 27.6 6.2 71 35-122 81-154 (213)
157 PRK07283 hypothetical protein; 41.5 1.2E+02 0.0027 23.4 6.6 53 53-114 24-78 (98)
158 PRK13940 glutamyl-tRNA reducta 41.3 74 0.0016 31.2 6.4 69 38-123 181-251 (414)
159 PF02423 OCD_Mu_crystall: Orni 40.8 59 0.0013 30.4 5.4 104 38-184 128-234 (313)
160 PF02670 DXP_reductoisom: 1-de 40.3 1.6E+02 0.0035 24.3 7.3 52 41-98 1-54 (129)
161 PF10087 DUF2325: Uncharacteri 39.9 1.2E+02 0.0025 23.1 6.2 42 80-121 12-55 (97)
162 PLN02712 arogenate dehydrogena 39.9 76 0.0016 33.1 6.5 66 35-122 49-116 (667)
163 TIGR00511 ribulose_e2b2 ribose 39.7 1.9E+02 0.0042 27.0 8.7 63 49-120 126-189 (301)
164 PRK04207 glyceraldehyde-3-phos 39.6 94 0.002 29.5 6.7 49 38-94 1-50 (341)
165 COG1748 LYS9 Saccharopine dehy 39.6 1.2E+02 0.0026 29.8 7.4 73 38-122 1-76 (389)
166 PRK12491 pyrroline-5-carboxyla 39.5 78 0.0017 29.0 5.9 66 39-122 3-71 (272)
167 PRK00973 glucose-6-phosphate i 39.3 95 0.0021 30.9 6.8 61 36-100 130-198 (446)
168 PF01113 DapB_N: Dihydrodipico 39.0 29 0.00063 27.8 2.7 34 39-76 1-36 (124)
169 PF01488 Shikimate_DH: Shikima 38.8 43 0.00092 27.1 3.7 72 38-123 12-84 (135)
170 TIGR00420 trmU tRNA (5-methyla 38.6 73 0.0016 30.5 5.8 55 39-98 1-70 (352)
171 COG1184 GCD2 Translation initi 38.6 2.1E+02 0.0045 27.2 8.7 63 49-120 129-193 (301)
172 PRK12439 NAD(P)H-dependent gly 38.5 76 0.0016 29.9 5.8 22 36-57 5-27 (341)
173 COG0313 Predicted methyltransf 37.7 1.9E+02 0.004 27.2 8.0 67 51-125 66-139 (275)
174 PRK11579 putative oxidoreducta 37.2 1.2E+02 0.0025 28.4 6.8 36 37-74 3-38 (346)
175 TIGR00268 conserved hypothetic 36.8 1.1E+02 0.0024 27.5 6.4 56 38-98 12-72 (252)
176 PRK00048 dihydrodipicolinate r 36.7 2.7E+02 0.0059 25.1 9.0 45 81-125 74-119 (257)
177 COG0743 Dxr 1-deoxy-D-xylulose 36.7 2E+02 0.0043 28.3 8.3 55 38-98 1-57 (385)
178 TIGR02992 ectoine_eutC ectoine 36.6 2.1E+02 0.0046 26.7 8.5 70 38-124 129-204 (326)
179 PRK04175 rpl7ae 50S ribosomal 35.9 2E+02 0.0042 23.4 7.1 52 53-113 36-90 (122)
180 PF01262 AlaDh_PNT_C: Alanine 35.7 96 0.0021 25.9 5.5 76 36-122 18-110 (168)
181 TIGR02371 ala_DH_arch alanine 35.3 3.8E+02 0.0083 25.1 10.2 101 38-185 128-233 (325)
182 PRK08293 3-hydroxybutyryl-CoA 35.3 3.4E+02 0.0074 24.6 10.1 66 110-180 80-148 (287)
183 PF09419 PGP_phosphatase: Mito 34.9 1.3E+02 0.0029 25.9 6.3 54 69-122 80-143 (168)
184 PRK07680 late competence prote 34.9 1E+02 0.0022 27.8 5.8 66 39-122 1-70 (273)
185 PRK00536 speE spermidine synth 34.6 65 0.0014 29.7 4.6 44 35-90 70-113 (262)
186 PRK06249 2-dehydropantoate 2-r 34.4 78 0.0017 29.2 5.1 31 36-71 3-34 (313)
187 COG0059 IlvC Ketol-acid reduct 34.4 1.9E+02 0.0041 27.9 7.6 63 38-120 18-80 (338)
188 PRK00094 gpsA NAD(P)H-dependen 34.4 98 0.0021 28.1 5.8 19 38-56 1-20 (325)
189 COG2403 Predicted GTPase [Gene 34.3 95 0.0021 30.7 5.8 81 35-125 3-92 (449)
190 cd01075 NAD_bind_Leu_Phe_Val_D 34.2 1.9E+02 0.0042 25.1 7.3 156 38-255 28-185 (200)
191 COG0120 RpiA Ribose 5-phosphat 34.0 89 0.0019 28.5 5.2 48 44-98 24-73 (227)
192 TIGR03677 rpl7ae 50S ribosomal 34.0 2.3E+02 0.0049 22.7 7.2 52 53-113 32-86 (117)
193 PRK06932 glycerate dehydrogena 33.9 4E+02 0.0086 24.9 10.6 70 107-206 190-264 (314)
194 PRK06823 ornithine cyclodeamin 33.9 4E+02 0.0088 25.0 10.3 105 37-185 127-233 (315)
195 PHA00771 head assembly protein 33.8 59 0.0013 27.3 3.7 49 169-217 62-114 (151)
196 cd05298 GH4_GlvA_pagL_like Gly 33.8 88 0.0019 31.0 5.6 76 39-121 1-81 (437)
197 PRK08535 translation initiatio 33.5 2.4E+02 0.0052 26.4 8.3 64 48-120 130-194 (310)
198 cd03785 GT1_MurG MurG is an N- 33.3 1.8E+02 0.004 26.2 7.4 52 40-98 1-55 (350)
199 PRK13789 phosphoribosylamine-- 33.2 75 0.0016 31.1 5.0 13 37-49 3-15 (426)
200 PRK07589 ornithine cyclodeamin 33.2 4.2E+02 0.009 25.4 10.0 105 38-185 129-236 (346)
201 PRK08618 ornithine cyclodeamin 33.1 1.2E+02 0.0027 28.3 6.3 70 38-124 127-202 (325)
202 cd07364 PCA_45_Dioxygenase_B S 33.0 65 0.0014 29.8 4.4 36 177-212 91-127 (277)
203 COG0499 SAM1 S-adenosylhomocys 33.0 1.3E+02 0.0028 29.7 6.4 34 65-98 69-102 (420)
204 cd05212 NAD_bind_m-THF_DH_Cycl 32.9 2.7E+02 0.0058 23.1 7.7 39 80-122 41-79 (140)
205 PRK05479 ketol-acid reductoiso 32.8 1.4E+02 0.003 28.6 6.6 62 38-121 17-80 (330)
206 PF03446 NAD_binding_2: NAD bi 32.5 1.7E+02 0.0036 24.2 6.5 63 38-122 1-65 (163)
207 COG0037 MesJ tRNA(Ile)-lysidin 32.5 1.9E+02 0.0041 26.0 7.3 58 38-98 21-85 (298)
208 TIGR00512 salvage_mtnA S-methy 32.3 1.8E+02 0.004 27.8 7.3 63 49-120 165-231 (331)
209 cd05197 GH4_glycoside_hydrolas 32.2 99 0.0022 30.4 5.7 76 39-121 1-81 (425)
210 cd03129 GAT1_Peptidase_E_like 32.1 3E+02 0.0066 23.7 8.3 59 65-123 29-89 (210)
211 KOG2862 Alanine-glyoxylate ami 32.0 3E+02 0.0064 26.8 8.5 76 41-121 69-149 (385)
212 PF01248 Ribosomal_L7Ae: Ribos 31.8 65 0.0014 24.2 3.5 52 53-113 21-75 (95)
213 PTZ00106 60S ribosomal protein 31.7 89 0.0019 24.9 4.4 53 53-113 31-85 (108)
214 TIGR00518 alaDH alanine dehydr 31.4 3.5E+02 0.0076 25.9 9.2 72 37-122 166-238 (370)
215 COG1493 HprK Serine kinase of 31.3 83 0.0018 29.9 4.7 57 37-98 47-112 (308)
216 TIGR01327 PGDH D-3-phosphoglyc 31.3 5.6E+02 0.012 25.8 13.1 160 39-253 139-304 (525)
217 PRK13365 protocatechuate 4,5-d 31.1 77 0.0017 29.4 4.5 36 177-212 91-127 (279)
218 TIGR00236 wecB UDP-N-acetylglu 31.1 4.1E+02 0.009 24.4 9.5 81 39-123 1-95 (365)
219 PF02056 Glyco_hydro_4: Family 31.0 55 0.0012 28.6 3.3 74 40-121 1-80 (183)
220 PRK08655 prephenate dehydrogen 30.9 1.1E+02 0.0025 30.0 5.9 64 39-122 1-66 (437)
221 PRK06476 pyrroline-5-carboxyla 30.9 1.6E+02 0.0034 26.2 6.4 66 39-122 1-69 (258)
222 PF02603 Hpr_kinase_N: HPr Ser 30.8 17 0.00036 29.6 0.1 57 38-98 48-112 (127)
223 PRK08291 ectoine utilization p 30.8 91 0.002 29.3 5.0 71 38-125 132-208 (330)
224 TIGR03022 WbaP_sugtrans Undeca 30.8 4.8E+02 0.01 25.3 10.2 37 37-75 124-161 (456)
225 PF05368 NmrA: NmrA-like famil 30.8 3.4E+02 0.0074 23.2 8.5 53 65-124 22-74 (233)
226 cd05213 NAD_bind_Glutamyl_tRNA 30.7 1.3E+02 0.0029 27.9 6.0 69 37-123 177-247 (311)
227 PRK07114 keto-hydroxyglutarate 30.3 2.4E+02 0.0052 25.4 7.4 65 43-119 72-137 (222)
228 TIGR03025 EPS_sugtrans exopoly 30.1 4.1E+02 0.0089 25.7 9.6 60 37-98 124-195 (445)
229 cd01998 tRNA_Me_trans tRNA met 29.8 94 0.002 29.6 4.9 54 40-98 1-67 (349)
230 PRK11889 flhF flagellar biosyn 29.8 2.9E+02 0.0063 27.6 8.4 82 37-125 240-331 (436)
231 COG0107 HisF Imidazoleglycerol 29.6 37 0.0008 31.3 2.0 57 39-95 198-254 (256)
232 COG0373 HemA Glutamyl-tRNA red 29.6 1.9E+02 0.004 28.7 7.0 68 37-122 177-246 (414)
233 PF02441 Flavoprotein: Flavopr 29.6 94 0.002 24.8 4.3 35 39-75 1-37 (129)
234 PRK10886 DnaA initiator-associ 29.6 3.2E+02 0.0068 24.0 7.9 54 66-122 110-164 (196)
235 COG2401 ABC-type ATPase fused 29.5 78 0.0017 32.0 4.4 37 83-125 550-586 (593)
236 TIGR03376 glycerol3P_DH glycer 29.3 1.7E+02 0.0037 27.9 6.6 18 40-57 1-19 (342)
237 PRK11790 D-3-phosphoglycerate 29.2 5.4E+02 0.012 25.0 10.4 114 81-224 164-292 (409)
238 cd01965 Nitrogenase_MoFe_beta_ 29.0 4.1E+02 0.0088 25.7 9.3 81 37-125 298-382 (428)
239 cd01713 PAPS_reductase This do 28.9 1.9E+02 0.0042 22.9 6.1 58 40-99 1-63 (173)
240 PRK03659 glutathione-regulated 28.9 1.5E+02 0.0032 30.4 6.5 70 38-122 400-472 (601)
241 PRK11559 garR tartronate semia 28.5 1.8E+02 0.004 26.2 6.5 64 38-122 2-66 (296)
242 cd05015 SIS_PGI_1 Phosphogluco 28.2 1.4E+02 0.0031 24.8 5.3 59 37-100 72-139 (158)
243 PRK03562 glutathione-regulated 28.1 1.9E+02 0.004 29.9 7.1 70 38-122 400-472 (621)
244 KOG3075 Ribose 5-phosphate iso 27.9 1E+02 0.0022 28.6 4.6 54 39-99 43-98 (261)
245 PRK15454 ethanol dehydrogenase 27.9 2.7E+02 0.0059 26.9 7.9 60 66-125 49-117 (395)
246 PRK07417 arogenate dehydrogena 27.9 2.1E+02 0.0046 25.8 6.8 110 39-176 1-115 (279)
247 cd01078 NAD_bind_H4MPT_DH NADP 27.8 3.7E+02 0.008 22.6 8.4 72 38-123 28-106 (194)
248 PRK00025 lpxB lipid-A-disaccha 27.8 96 0.0021 28.7 4.6 34 38-71 1-36 (380)
249 TIGR00465 ilvC ketol-acid redu 27.6 2.1E+02 0.0045 26.9 6.8 63 38-122 3-67 (314)
250 PLN02712 arogenate dehydrogena 27.6 1.6E+02 0.0034 30.9 6.4 66 35-122 366-433 (667)
251 COG1486 CelF Alpha-galactosida 27.5 1.8E+02 0.0039 29.1 6.5 75 37-121 2-84 (442)
252 PRK05234 mgsA methylglyoxal sy 27.4 3.6E+02 0.0078 22.4 7.7 76 36-122 2-83 (142)
253 COG0540 PyrB Aspartate carbamo 27.4 2.9E+02 0.0063 26.4 7.6 23 158-182 254-277 (316)
254 TIGR02855 spore_yabG sporulati 27.3 1.1E+02 0.0024 28.8 4.7 40 84-123 121-162 (283)
255 KOG3857 Alcohol dehydrogenase, 27.2 5.4E+02 0.012 25.5 9.4 89 35-125 36-138 (465)
256 cd05293 LDH_1 A subgroup of L- 27.2 1.2E+02 0.0026 28.5 5.1 81 37-126 2-84 (312)
257 PRK00045 hemA glutamyl-tRNA re 26.8 1.1E+02 0.0024 29.7 5.0 69 37-122 181-250 (423)
258 cd00532 MGS-like MGS-like doma 26.7 1.5E+02 0.0033 23.1 4.9 40 53-96 57-104 (112)
259 cd05565 PTS_IIB_lactose PTS_II 26.5 1.3E+02 0.0028 23.6 4.4 36 83-122 20-55 (99)
260 PTZ00222 60S ribosomal protein 26.5 3E+02 0.0066 25.6 7.4 73 39-124 128-205 (263)
261 PRK14618 NAD(P)H-dependent gly 26.5 2.2E+02 0.0048 26.3 6.7 19 38-56 4-23 (328)
262 PRK11914 diacylglycerol kinase 26.5 2.2E+02 0.0048 26.0 6.7 8 39-46 9-16 (306)
263 KOG0259 Tyrosine aminotransfer 26.4 1.1E+02 0.0024 30.2 4.8 53 67-128 200-262 (447)
264 TIGR00872 gnd_rel 6-phosphoglu 26.3 1.9E+02 0.004 26.6 6.2 64 39-121 1-66 (298)
265 PF07085 DRTGG: DRTGG domain; 26.3 59 0.0013 25.0 2.4 32 68-99 62-93 (105)
266 TIGR00524 eIF-2B_rel eIF-2B al 26.2 2.6E+02 0.0057 26.2 7.2 62 50-120 138-203 (303)
267 TIGR03609 S_layer_CsaB polysac 26.0 2.4E+02 0.0052 25.5 6.8 44 66-122 29-72 (298)
268 COG2344 AT-rich DNA-binding pr 25.9 2.8E+02 0.0062 24.9 6.8 101 34-177 80-182 (211)
269 PRK06141 ornithine cyclodeamin 25.9 4.3E+02 0.0092 24.6 8.6 71 38-125 125-200 (314)
270 COG3961 Pyruvate decarboxylase 25.8 1.3E+02 0.0029 30.7 5.4 44 81-124 227-286 (557)
271 TIGR01182 eda Entner-Doudoroff 25.8 2.9E+02 0.0063 24.5 7.0 66 42-119 60-126 (204)
272 PF02826 2-Hacid_dh_C: D-isome 25.7 1.4E+02 0.0031 25.1 4.9 105 38-194 36-145 (178)
273 COG0075 Serine-pyruvate aminot 25.6 4.9E+02 0.011 25.5 9.1 67 42-113 58-127 (383)
274 PF04705 TSNR_N: Thiostrepton- 25.6 77 0.0017 25.6 2.9 64 52-125 37-104 (115)
275 TIGR01915 npdG NADPH-dependent 25.6 2.7E+02 0.006 24.1 6.9 12 111-122 65-76 (219)
276 COG2257 Uncharacterized homolo 25.4 66 0.0014 25.3 2.5 30 81-118 35-64 (92)
277 PRK07502 cyclohexadienyl dehyd 25.4 3.4E+02 0.0073 24.8 7.7 67 39-122 7-74 (307)
278 COG0421 SpeE Spermidine syntha 25.3 2.3E+02 0.0049 26.4 6.5 77 39-125 78-160 (282)
279 PRK06270 homoserine dehydrogen 25.2 2.7E+02 0.0059 26.3 7.2 83 38-123 2-98 (341)
280 PRK06015 keto-hydroxyglutarate 25.0 3E+02 0.0066 24.4 7.0 66 42-119 56-122 (201)
281 PRK13289 bifunctional nitric o 24.9 5.6E+02 0.012 24.2 9.4 59 38-96 261-324 (399)
282 KOG2380 Prephenate dehydrogena 24.7 2.3E+02 0.005 27.9 6.5 127 20-179 34-173 (480)
283 cd01988 Na_H_Antiporter_C The 24.6 3.1E+02 0.0067 20.7 9.5 43 83-125 61-105 (132)
284 CHL00194 ycf39 Ycf39; Provisio 24.6 2.6E+02 0.0056 25.4 6.8 69 39-122 1-72 (317)
285 PRK13303 L-aspartate dehydroge 24.5 3.9E+02 0.0085 24.2 7.9 32 38-73 1-33 (265)
286 cd01424 MGS_CPS_II Methylglyox 24.2 1.7E+02 0.0037 22.5 4.8 40 53-96 57-100 (110)
287 PF01451 LMWPc: Low molecular 24.2 1.5E+02 0.0033 23.5 4.7 79 41-124 1-86 (138)
288 PRK09496 trkA potassium transp 24.0 2.2E+02 0.0047 27.3 6.4 71 39-121 1-72 (453)
289 COG0569 TrkA K+ transport syst 24.0 2.6E+02 0.0057 24.7 6.5 32 39-75 1-33 (225)
290 PRK13301 putative L-aspartate 24.0 2.1E+02 0.0046 26.6 6.0 34 38-73 2-36 (267)
291 PF05582 Peptidase_U57: YabG p 24.0 1.2E+02 0.0026 28.6 4.4 40 84-123 122-163 (287)
292 TIGR00561 pntA NAD(P) transhyd 23.9 3.6E+02 0.0078 27.4 8.1 51 37-98 163-214 (511)
293 TIGR03023 WcaJ_sugtrans Undeca 23.8 5.4E+02 0.012 24.9 9.2 59 38-98 128-198 (451)
294 PRK13978 ribose-5-phosphate is 23.7 1.9E+02 0.0041 26.3 5.5 47 44-98 25-75 (228)
295 PF01081 Aldolase: KDPG and KH 23.7 2.8E+02 0.0061 24.5 6.5 64 44-119 62-126 (196)
296 PRK12767 carbamoyl phosphate s 23.6 3.4E+02 0.0073 24.7 7.3 20 38-60 1-20 (326)
297 COG0603 Predicted PP-loop supe 23.5 3.7E+02 0.008 24.4 7.3 56 38-98 2-62 (222)
298 PF03033 Glyco_transf_28: Glyc 23.4 2.8E+02 0.006 21.5 5.9 51 41-100 1-54 (139)
299 cd06198 FNR_like_3 NAD(P) bind 23.4 4.3E+02 0.0094 22.4 7.6 61 38-98 95-159 (216)
300 PRK06372 translation initiatio 23.3 4.2E+02 0.0091 24.4 7.8 67 43-120 90-157 (253)
301 PRK13581 D-3-phosphoglycerate 23.2 7.8E+02 0.017 24.8 13.9 158 38-253 140-305 (526)
302 PF07905 PucR: Purine cataboli 23.1 1.8E+02 0.0039 23.1 4.8 45 52-100 61-108 (123)
303 PRK06395 phosphoribosylamine-- 23.0 2.8E+02 0.0061 27.2 7.0 31 38-73 2-33 (435)
304 PF00670 AdoHcyase_NAD: S-aden 22.9 4.8E+02 0.01 22.4 7.6 86 38-175 23-110 (162)
305 TIGR02356 adenyl_thiF thiazole 22.8 2E+02 0.0043 25.0 5.4 17 106-122 103-119 (202)
306 PRK13057 putative lipid kinase 22.8 2.8E+02 0.0061 25.1 6.6 8 115-122 51-58 (287)
307 cd01997 GMP_synthase_C The C-t 22.4 3E+02 0.0065 25.7 6.8 56 40-99 1-62 (295)
308 TIGR03013 EpsB_2 sugar transfe 22.3 3.3E+02 0.0071 26.6 7.3 36 38-75 124-160 (442)
309 smart00851 MGS MGS-like domain 22.2 2E+02 0.0044 21.3 4.7 38 54-95 46-89 (90)
310 COG2084 MmsB 3-hydroxyisobutyr 22.2 2.4E+02 0.0052 26.5 6.0 62 39-121 1-64 (286)
311 PRK12921 2-dehydropantoate 2-r 22.1 1.5E+02 0.0031 26.8 4.5 72 39-122 1-76 (305)
312 cd01422 MGS Methylglyoxal synt 22.1 1.8E+02 0.0039 23.1 4.6 40 53-96 60-106 (115)
313 cd06194 FNR_N-term_Iron_sulfur 22.0 5E+02 0.011 22.1 8.8 59 38-96 97-160 (222)
314 PRK15076 alpha-galactosidase; 22.0 1.9E+02 0.0041 28.5 5.6 77 38-121 1-82 (431)
315 COG2121 Uncharacterized protei 22.0 2.7E+02 0.0058 25.2 6.0 45 50-98 105-153 (214)
316 PF03435 Saccharop_dh: Sacchar 21.9 2.6E+02 0.0057 26.3 6.5 70 41-122 1-75 (386)
317 COG2179 Predicted hydrolase of 21.9 3.6E+02 0.0077 23.7 6.6 63 52-122 51-117 (175)
318 PF12738 PTCB-BRCT: twin BRCT 21.8 1.3E+02 0.0028 20.7 3.3 44 50-96 14-60 (63)
319 PRK11175 universal stress prot 21.8 2.5E+02 0.0054 25.1 6.0 71 83-174 228-300 (305)
320 PRK10124 putative UDP-glucose 21.7 6.2E+02 0.013 25.0 9.2 85 37-123 142-239 (463)
321 COG2266 GTP:adenosylcobinamide 21.5 5.6E+02 0.012 22.5 9.0 51 55-113 33-83 (177)
322 PF02254 TrkA_N: TrkA-N domain 21.5 3.6E+02 0.0078 20.3 7.4 68 41-122 1-70 (116)
323 PRK00141 murD UDP-N-acetylmura 21.5 3.9E+02 0.0084 26.3 7.7 58 29-96 7-64 (473)
324 PF11039 DUF2824: Protein of u 21.4 86 0.0019 26.5 2.6 52 165-216 58-113 (151)
325 PRK13054 lipid kinase; Reviewe 21.3 4.7E+02 0.01 23.8 7.9 57 38-97 3-62 (300)
326 PRK10307 putative glycosyl tra 21.2 6.8E+02 0.015 23.4 10.1 80 39-122 230-311 (412)
327 PF04273 DUF442: Putative phos 21.2 2.8E+02 0.0061 22.0 5.5 31 68-98 28-64 (110)
328 COG0707 MurG UDP-N-acetylgluco 21.1 6.2E+02 0.014 24.2 8.8 55 39-99 1-58 (357)
329 cd08183 Fe-ADH2 Iron-containin 21.1 2.9E+02 0.0062 26.3 6.5 57 69-125 25-86 (374)
330 TIGR02638 lactal_redase lactal 21.1 4.8E+02 0.01 24.8 8.1 59 67-125 30-97 (379)
331 cd05296 GH4_P_beta_glucosidase 21.0 2.1E+02 0.0046 28.1 5.7 76 39-121 1-82 (419)
332 PRK06928 pyrroline-5-carboxyla 21.0 2.7E+02 0.0058 25.3 6.1 11 38-48 1-11 (277)
333 PRK14690 molybdopterin biosynt 20.8 2.3E+02 0.0049 27.9 5.8 42 82-124 224-269 (419)
334 cd08182 HEPD Hydroxyethylphosp 20.8 4E+02 0.0086 25.2 7.4 57 69-125 26-88 (367)
335 cd02001 TPP_ComE_PpyrDC Thiami 20.8 3.4E+02 0.0073 22.5 6.2 57 40-98 60-129 (157)
336 cd02004 TPP_BZL_OCoD_HPCL Thia 20.6 3.6E+02 0.0078 22.3 6.4 17 82-98 130-146 (172)
337 PRK05788 cobalamin biosynthesi 20.4 2.7E+02 0.0059 26.3 6.1 59 40-98 193-258 (315)
338 KOG1466 Translation initiation 20.4 5.3E+02 0.011 24.4 7.7 63 51-122 143-206 (313)
339 COG1454 EutG Alcohol dehydroge 20.4 6.4E+02 0.014 24.6 8.7 81 40-125 8-97 (377)
340 COG1712 Predicted dinucleotide 20.3 3.3E+02 0.0071 25.2 6.3 49 39-93 1-49 (255)
341 PF02310 B12-binding: B12 bind 20.2 2.9E+02 0.0063 21.0 5.4 38 83-122 20-59 (121)
342 KOG1905 Class IV sirtuins (SIR 20.2 34 0.00074 32.6 0.0 36 174-209 69-104 (353)
343 PRK03673 hypothetical protein; 20.0 2E+02 0.0044 28.1 5.3 67 38-125 1-71 (396)
No 1
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=6e-55 Score=398.08 Aligned_cols=226 Identities=80% Similarity=1.309 Sum_probs=209.2
Q ss_pred CCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH
Q 024606 10 SSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~ 89 (265)
+.+..+|.++++.|.+.+..|++.+.++++|||||+||.||||++|++++++|+++++|++||||+++++++++.++|++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~ 121 (268)
T PLN02828 42 AQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLER 121 (268)
T ss_pred HHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHH
Confidence 45668999999999864446778888899999999999999999999999999999999999999987778899999999
Q ss_pred cCCCEEEECCC-CCchHHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCC
Q 024606 90 HGIPYHYLCAK-ENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKD 168 (265)
Q Consensus 90 ~gIP~~~~~~~-~~~~~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~ 168 (265)
+|||++.++.+ .+.+++++++.++++|++|+||||| ||++++++.++++
T Consensus 122 ~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~------------------------------IL~~~~l~~~~~r 171 (268)
T PLN02828 122 HGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ------------------------------ILSGNFLKGYGKD 171 (268)
T ss_pred cCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH------------------------------hCCHHHHhhccCC
Confidence 99999987754 2345667788777999999999999 9999999999999
Q ss_pred eEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024606 169 VINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKS 248 (265)
Q Consensus 169 ~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~ 248 (265)
+||+|||+||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.+.+++++.+++++
T Consensus 172 iINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~ 251 (268)
T PLN02828 172 IINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKS 251 (268)
T ss_pred EEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeeecCCceeeC
Q 024606 249 YCELRVLPYEMNKTVVF 265 (265)
Q Consensus 249 i~~g~~~~~~~~k~vv~ 265 (265)
+.++++..+..||||||
T Consensus 252 ~~~~~~~~~~~~~tvvf 268 (268)
T PLN02828 252 YCELRVLPYGTNKTVVF 268 (268)
T ss_pred HHhCCeEEcCCCcEEeC
Confidence 99999999744999998
No 2
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=1.1e-51 Score=379.36 Aligned_cols=225 Identities=47% Similarity=0.775 Sum_probs=201.2
Q ss_pred CCCCc--cccCCCcchhHh-hhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCC
Q 024606 2 FSCPR--KRMSSIPGDFFK-LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 78 (265)
Q Consensus 2 ~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~ 78 (265)
+++|. -+.+.+..+|.+ ++++|++. +++.+.++++||+||+||+||||++|++++++|+++++|++|+||++
T Consensus 48 v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~-- 122 (280)
T TIGR00655 48 FQLEGFRLEESSLLAAFKSALAEKFEMT---WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE-- 122 (280)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhCCE---EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh--
Confidence 34554 245667788999 99999875 45556778899999999999999999999999999999999999984
Q ss_pred CCcHHHHHHHHcCCCEEEECCCCCc---hHHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccc
Q 024606 79 PNSHVIRFLERHGIPYHYLCAKENE---REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF 153 (265)
Q Consensus 79 ~~~~v~~~a~~~gIP~~~~~~~~~~---~~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~ 153 (265)
+ +..+|+++|||++.++.+... .++++.++++ ++|++|++|||+
T Consensus 123 -~--~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym~---------------------------- 171 (280)
T TIGR00655 123 -D--LRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQ---------------------------- 171 (280)
T ss_pred -h--HHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCchh----------------------------
Confidence 3 345799999999987753222 2457788787 899999999999
Q ss_pred cccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHH
Q 024606 154 NMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQK 233 (265)
Q Consensus 154 ~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~r 233 (265)
|+++++++.+++++||+|||+||+|||.+|++||+.+|++++|+|+|+|++++|+||||.|+.++|.++||.++|.+|
T Consensus 172 --il~~~~l~~~~~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~~v~I~~~dt~~~L~~r 249 (280)
T TIGR00655 172 --ILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVEDLIRA 249 (280)
T ss_pred --hCCHHHHhhccCCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEEcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCeeeecCCceeeC
Q 024606 234 SEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 265 (265)
Q Consensus 234 l~~~~~~ll~~ai~~i~~g~~~~~~~~k~vv~ 265 (265)
+++.|+++++++++.+.++++... ++|||||
T Consensus 250 i~~~E~~~~~~ai~~~~~~~~~~~-~~~~~vf 280 (280)
T TIGR00655 250 GRDIEKVVLARAVKLHLEDRVFVY-ENKTVVF 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEc-CCeeEEC
Confidence 999999999999999999999876 4999998
No 3
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=7.4e-51 Score=375.25 Aligned_cols=219 Identities=42% Similarity=0.715 Sum_probs=198.2
Q ss_pred ccCCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHH
Q 024606 8 RMSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a 87 (265)
.++.++.+|.++++++++.+ ++...+.++|||||+||+||||++|++++++|+++++|++|+||++ + +.++|
T Consensus 66 ~~~~l~~~l~~l~~~l~l~~---~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~---~--~~~~A 137 (289)
T PRK13010 66 SVDTFRQEFQPVAEKFDMQW---AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP---D--LQPLA 137 (289)
T ss_pred CHHHHHHHHHHHHHHhCCeE---EEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh---h--HHHHH
Confidence 34556678999999998754 4445667889999999999999999999999999999999999984 2 46999
Q ss_pred HHcCCCEEEECCCCC---chHHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHH
Q 024606 88 ERHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFL 162 (265)
Q Consensus 88 ~~~gIP~~~~~~~~~---~~~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il 162 (265)
+++|||+++++.+.. ..++++.++++ ++|++|++|||+ ||+++++
T Consensus 138 ~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~------------------------------il~~~~l 187 (289)
T PRK13010 138 VQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ------------------------------VLSDDLS 187 (289)
T ss_pred HHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhh------------------------------hCCHHHH
Confidence 999999998875432 22456788887 899999999999 9999999
Q ss_pred hhcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 024606 163 RSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCL 242 (265)
Q Consensus 163 ~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll 242 (265)
+.|++++||+|||+||+|||.+|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.+.+++++
T Consensus 188 ~~~~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l 267 (289)
T PRK13010 188 RKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTL 267 (289)
T ss_pred hhccCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeeeecCCceeeC
Q 024606 243 AKAIKSYCELRVLPYEMNKTVVF 265 (265)
Q Consensus 243 ~~ai~~i~~g~~~~~~~~k~vv~ 265 (265)
+++++++.++++... ++|||||
T Consensus 268 ~~ai~~~~~~~~~~~-~~~~~vf 289 (289)
T PRK13010 268 ARAVKAFIEHRVFIN-GDRTVVF 289 (289)
T ss_pred HHHHHHHHhCCEEEe-CCEEEEC
Confidence 999999999999876 5999998
No 4
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.5e-50 Score=370.38 Aligned_cols=218 Identities=44% Similarity=0.722 Sum_probs=195.6
Q ss_pred cCCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH
Q 024606 9 MSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~ 88 (265)
.+.+..+|..+++..++. +++....+++||+||+||+|+||++|++++++|+++++|++|+||++ + +..+|+
T Consensus 63 ~~~L~~~L~~l~~~l~l~---i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~---~--~~~lA~ 134 (286)
T PRK13011 63 EDALRAGFAPIAARFGMQ---WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHP---D--LEPLAA 134 (286)
T ss_pred HHHHHHHHHHHHHHhCcE---EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCc---c--HHHHHH
Confidence 455667899999999874 44445667899999999999999999999999999999999999884 2 456699
Q ss_pred HcCCCEEEECCCCCc---hHHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHh
Q 024606 89 RHGIPYHYLCAKENE---REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR 163 (265)
Q Consensus 89 ~~gIP~~~~~~~~~~---~~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~ 163 (265)
++|||++.++.+... .++++.++++ ++|++|++|||+ ||++++++
T Consensus 135 ~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~ 184 (286)
T PRK13011 135 WHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYMQ------------------------------VLSPELCR 184 (286)
T ss_pred HhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChhh------------------------------hCCHHHHh
Confidence 999999987643222 2446777776 899999999999 99999999
Q ss_pred hcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 024606 164 SYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 243 (265)
Q Consensus 164 ~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~ 243 (265)
.|++++||+||||||+|||.+|++||+.+|++++|+|+|+|++++|+||||.|++++|.++||.++|.+|+++.++++++
T Consensus 185 ~~~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~ 264 (286)
T PRK13011 185 KLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSPEDLVAKGRDVECLTLA 264 (286)
T ss_pred hccCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeeecCCceeeC
Q 024606 244 KAIKSYCELRVLPYEMNKTVVF 265 (265)
Q Consensus 244 ~ai~~i~~g~~~~~~~~k~vv~ 265 (265)
++++++.++++... ++||+||
T Consensus 265 ~ai~~~~~~~~~~~-~~~~~~~ 285 (286)
T PRK13011 265 RAVKAHIERRVFLN-GNRTVVF 285 (286)
T ss_pred HHHHHHHhCCeEEc-CCEEEeC
Confidence 99999999998876 5999998
No 5
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.6e-50 Score=370.26 Aligned_cols=218 Identities=51% Similarity=0.833 Sum_probs=197.0
Q ss_pred cCCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH
Q 024606 9 MSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~ 88 (265)
.+.+..+|..+++.+++. +++.+..+++|||||+||+|+||++|++++++|.++++|++|+||++ .+..+|+
T Consensus 63 ~~~L~~~L~~l~~~l~l~---i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~-----~~~~lA~ 134 (286)
T PRK06027 63 LETLRADFAALAEEFEMD---WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-----DLRSLVE 134 (286)
T ss_pred HHHHHHHHHHHHHHhCCE---EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh-----hHHHHHH
Confidence 445667899999999874 55667888999999999999999999999999999999999999984 2456799
Q ss_pred HcCCCEEEECCCCC---chHHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHh
Q 024606 89 RHGIPYHYLCAKEN---EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR 163 (265)
Q Consensus 89 ~~gIP~~~~~~~~~---~~~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~ 163 (265)
++|||++.++.+.. ..+.++.++++ ++|++|++|||+ ||++++++
T Consensus 135 ~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~ 184 (286)
T PRK06027 135 RFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ------------------------------ILSPDFVA 184 (286)
T ss_pred HhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchh------------------------------hcCHHHHh
Confidence 99999998775421 22456778777 899999999999 99999999
Q ss_pred hcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 024606 164 SYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 243 (265)
Q Consensus 164 ~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~ 243 (265)
.|++++||+|||+||+|||.+|++||+.+|++++|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.++++++++
T Consensus 185 ~~~~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~ 264 (286)
T PRK06027 185 RFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLA 264 (286)
T ss_pred hccCCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeeecCCceeeC
Q 024606 244 KAIKSYCELRVLPYEMNKTVVF 265 (265)
Q Consensus 244 ~ai~~i~~g~~~~~~~~k~vv~ 265 (265)
++++++.++++... ++|++||
T Consensus 265 ~ai~~~~~~~~~~~-~~~~~~~ 285 (286)
T PRK06027 265 RAVRWHLEDRVLVY-GNKTVVF 285 (286)
T ss_pred HHHHHHHhCCEEEc-CCEEEEc
Confidence 99999999999876 4888887
No 6
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.9e-50 Score=346.38 Aligned_cols=192 Identities=35% Similarity=0.497 Sum_probs=180.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCC-c---hHHHHHHHhh-
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELLELVQ- 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~---~~~~l~~~l~- 113 (265)
+||+||+||+||||++|+++++.|.++++|++|+||+ ++++++++|+++|||++.+.+++. . .+.++.+.+.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999998 689999999999999998887643 2 3567888887
Q ss_pred -CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHh
Q 024606 114 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 192 (265)
Q Consensus 114 -~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~ 192 (265)
++|++|+||||+ ||++.|++.|++++||+||||||.|+|.+.+..|+.+
T Consensus 78 ~~~dlvvLAGyMr------------------------------IL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~a 127 (200)
T COG0299 78 YGPDLVVLAGYMR------------------------------ILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEA 127 (200)
T ss_pred cCCCEEEEcchHH------------------------------HcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceee
Q 024606 193 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 264 (265)
Q Consensus 193 G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k~vv 264 (265)
|++++|+|||++++++|+||||.|..+||.++||.++|.+|+.+.++++++++++++.+|+++..+ |++++
T Consensus 128 G~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~~~-~~~~~ 198 (200)
T COG0299 128 GVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKIEG-GRVIL 198 (200)
T ss_pred CCCccCcEEEEEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcceecC-ceEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999864 77754
No 7
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=1.6e-46 Score=331.66 Aligned_cols=191 Identities=26% Similarity=0.458 Sum_probs=174.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC----CchHHHHHHHhh--
Q 024606 40 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 113 (265)
Q Consensus 40 rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~l~~~l~-- 113 (265)
||+||+||+||||++|++++++|.++++|++||||+ +++.++++|+++|||++.++.+. +..++++.+.++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 799999999999999999999999999999999998 57889999999999999876532 123567888887
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHH
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQA 189 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~a 189 (265)
++|++|++|||+ +||+++++.++.++||+|||+||+|||. .|++|+
T Consensus 78 ~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a 127 (207)
T PLN02331 78 GVDFVLLAGYLK------------------------------LIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKA 127 (207)
T ss_pred CCCEEEEeCcch------------------------------hCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHH
Confidence 899999999999 8999999999999999999999999996 688888
Q ss_pred H-HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceee
Q 024606 190 F-DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 264 (265)
Q Consensus 190 i-~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k~vv 264 (265)
+ .+|++++|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.+.++++++++++.+.+|++...+ ++++.
T Consensus 128 ~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~~~-~~~~~ 202 (207)
T PLN02331 128 VIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWRE-DGVPL 202 (207)
T ss_pred HHHcCCCeEEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeCC-CeeEE
Confidence 5 58999999999999999999999999999999999999999999999999999999999999988765 66543
No 8
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=2.6e-46 Score=326.42 Aligned_cols=183 Identities=33% Similarity=0.534 Sum_probs=170.0
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC----CchHHHHHHHhh-
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~l~~~l~- 113 (265)
+|||||+||+|||++++++++.++.++++|++||+++ +++.+.++|+++|||++.++.+. +..++++.+.++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 6999999999999999999999998889999999998 46788999999999998765332 122567888887
Q ss_pred -CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHh
Q 024606 114 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 192 (265)
Q Consensus 114 -~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~ 192 (265)
++|++|++||++ ||++++++.++.+++|+|||+||+|||.+|++||+.+
T Consensus 78 ~~~D~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (190)
T TIGR00639 78 HEVDLVVLAGFMR------------------------------ILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEA 127 (190)
T ss_pred cCCCEEEEeCcch------------------------------hCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Q 024606 193 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 254 (265)
Q Consensus 193 G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~ 254 (265)
|++++|+|+|+|++++|+|||+.|++++|.++||.++|++|+...+++++.++++++.+|++
T Consensus 128 g~~~tGvTih~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~g~~ 189 (190)
T TIGR00639 128 GVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQGRL 189 (190)
T ss_pred CCCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 9
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=4.2e-46 Score=327.38 Aligned_cols=188 Identities=35% Similarity=0.512 Sum_probs=172.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC-Cc---hHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE---REEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~---~~~~l~~~l~ 113 (265)
||||+||+||+|+|++++++++.++.+.++|++|||++ +++.+.++|+++|||++.++... +. .++++.+.++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 58999999999999999999999998889999999998 46788999999999998766321 11 2457777776
Q ss_pred --CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHH
Q 024606 114 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 191 (265)
Q Consensus 114 --~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~ 191 (265)
++|++|++||++ |+++++++.++.++||+|||+||+|||++|++||+.
T Consensus 78 ~~~~D~iv~~~~~~------------------------------ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~ 127 (200)
T PRK05647 78 AYQPDLVVLAGFMR------------------------------ILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALE 127 (200)
T ss_pred HhCcCEEEhHHhhh------------------------------hCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHH
Confidence 899999999999 899999999999999999999999999999999999
Q ss_pred hCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 024606 192 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 258 (265)
Q Consensus 192 ~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~ 258 (265)
+|++++|+|+|+|++++|+||||.|++++|.++||.++|+.|+.+++.+++.++++.+.+|++...+
T Consensus 128 ~g~~~tG~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~ 194 (200)
T PRK05647 128 AGVKVHGCTVHFVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEG 194 (200)
T ss_pred cCCCeEEEEEEEEcCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999987653
No 10
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-44 Score=308.75 Aligned_cols=195 Identities=43% Similarity=0.607 Sum_probs=181.8
Q ss_pred CCCceEEEEEeCCchhHHHHHHHHHcCCC--CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCC-c---hHHHHH
Q 024606 36 DPKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELL 109 (265)
Q Consensus 36 ~~~~rIav~~Sg~g~~l~~ll~~~~~~~l--~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~---~~~~l~ 109 (265)
.++.|++|+.||.||||++|+++.++|.+ +++|+.|+||+ .++..+++|+.+|||+.+++++.- . .+.|+.
T Consensus 4 ~~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~ 80 (206)
T KOG3076|consen 4 WRRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELA 80 (206)
T ss_pred ccceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHH
Confidence 45689999999999999999999999988 79999999998 678999999999999999997421 1 245777
Q ss_pred HHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHH
Q 024606 110 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 187 (265)
Q Consensus 110 ~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~ 187 (265)
+.+. ++|++++||||| ||+.+|++.|+..+||+||||||.|+|.+++.
T Consensus 81 ~~l~e~~~d~v~lAG~M~------------------------------iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k 130 (206)
T KOG3076|consen 81 EVLLELGTDLVCLAGYMR------------------------------ILSGEFLSQLPKRIINIHPALLPAFKGLHAIK 130 (206)
T ss_pred HHHHHhCCCEEEehhhHH------------------------------HcCHHHHhhcccceEecccccccccCCchHHH
Confidence 7765 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCcee
Q 024606 188 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 263 (265)
Q Consensus 188 ~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k~v 263 (265)
+|+..|.+.+|+|+||+++++|+|+||.|..++|.++||.++|.+|++.+++.++++++..+.+++..+++.++++
T Consensus 131 ~Aleagv~~~GctvHfV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~~~~~~~~~~ 206 (206)
T KOG3076|consen 131 QALEAGVKLSGCTVHFVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRVLPYETGRTV 206 (206)
T ss_pred HHHHhccccccceEEEehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcceeCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988774
No 11
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=2.1e-43 Score=331.58 Aligned_cols=197 Identities=23% Similarity=0.338 Sum_probs=174.2
Q ss_pred CCCCceEEEEEeCC--chhHHHHHHHHHcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEECCCCCchH
Q 024606 35 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE 105 (265)
Q Consensus 35 ~~~~~rIav~~Sg~--g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~ 105 (265)
.+++|||+||||+. .+||++|+++++++..+++|++|||+++++. .+++.++|+++|||++.+......++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 46789999999997 4699999999888877799999999997653 35799999999999643322223345
Q ss_pred HHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 106 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 106 ~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
+++++.++ ++|++|+++||+ |||+++++.+++++||+|||+||+|||+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~------------------------------ilp~~~l~~~~~g~iNiHpSLLP~yRG~ 132 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN------------------------------ILPQKFLDIPKLGTVNIHPSLLPLYRGA 132 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh------------------------------hcCHHHHhhccCCEEEEecccccCCCCc
Confidence 66777776 899999999999 9999999999999999999999999999
Q ss_pred cHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--eeeecCCc
Q 024606 184 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR--VLPYEMNK 261 (265)
Q Consensus 184 ~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~--~~~~~~~k 261 (265)
+|++|||++|++++|+|+|+|++++|+||||.|++++|.++||.++|++|+.+++++++.+++..+.+|+ ..+.+|+.
T Consensus 133 ~pi~~ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~~~~~~~~~~Q~~ 212 (334)
T PLN02285 133 APVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLDGSAKDKATPQDD 212 (334)
T ss_pred CHHHHHHHcCCCcEEEEEEEECCCccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886 45556654
No 12
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.1e-44 Score=320.20 Aligned_cols=218 Identities=49% Similarity=0.786 Sum_probs=201.2
Q ss_pred cCCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH
Q 024606 9 MSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~ 88 (265)
.+.+.++|.++++.|.+ .|+..+++.++||++|+|..++||.+||-.|..|+|+++|++||+|+++ +...++
T Consensus 64 ~~~l~~~f~~~a~~f~m---~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~ 135 (287)
T COG0788 64 REALRAAFAPLAEEFGM---DWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVE 135 (287)
T ss_pred HHHHHHHHHHHHHhhCc---eeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHH
Confidence 34466899999999986 4666689999999999999999999999999999999999999999964 589999
Q ss_pred HcCCCEEEECC-CCC--chHHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHh
Q 024606 89 RHGIPYHYLCA-KEN--EREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR 163 (265)
Q Consensus 89 ~~gIP~~~~~~-~~~--~~~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~ 163 (265)
++|||++.++. +++ ..++.++++++ ++|+||+|.||| ||++++++
T Consensus 136 ~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYMq------------------------------ILS~d~~~ 185 (287)
T COG0788 136 RFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQ------------------------------ILSPDFVE 185 (287)
T ss_pred HcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhHh------------------------------hCCHHHHH
Confidence 99999999984 343 22456777777 799999999999 99999999
Q ss_pred hcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 024606 164 SYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLA 243 (265)
Q Consensus 164 ~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~ 243 (265)
.+.+++||||+|+||.|.|++|+++|..+|.+..|+|.||+++.+|.||||.|..++|++.+|.+++..+-.+.+...+.
T Consensus 186 ~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLA 265 (287)
T COG0788 186 RFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLA 265 (287)
T ss_pred hccCcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeeccCCCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeeecCCceeeC
Q 024606 244 KAIKSYCELRVLPYEMNKTVVF 265 (265)
Q Consensus 244 ~ai~~i~~g~~~~~~~~k~vv~ 265 (265)
++++.-.++++..+. ||||||
T Consensus 266 RAv~~hle~Rv~v~g-nkTVVf 286 (287)
T COG0788 266 RAVKAHLEDRVFVNG-NKTVVF 286 (287)
T ss_pred HHHHHHhcceEEEeC-CeEEec
Confidence 999999999999985 999998
No 13
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-43 Score=323.87 Aligned_cols=186 Identities=24% Similarity=0.332 Sum_probs=170.1
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEECCCCCchHHHH
Q 024606 38 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 108 (265)
Q Consensus 38 ~~rIav~~Sg~g~--~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~l 108 (265)
+|||+|||+...+ +|++|+++ +++|++|+|.+|++. .+++.++|.++|||++. |.+ .+++|+
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~--l~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEK--LNDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-ccc--CCcHHH
Confidence 5899999999864 68888874 389999999998774 38899999999999874 543 344577
Q ss_pred HHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHH
Q 024606 109 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 186 (265)
Q Consensus 109 ~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi 186 (265)
.+.++ ++|++|++.|++ |||+++|+.+++||+|+||||||+|||++|+
T Consensus 72 ~~~l~~l~~D~ivvvayG~------------------------------ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPI 121 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQ------------------------------ILPKEILDLPPYGCINLHPSLLPRYRGAAPI 121 (307)
T ss_pred HHHHhccCCCEEEEEehhh------------------------------hCCHHHHhcCcCCeEEecCccCccccCccHH
Confidence 88777 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCce
Q 024606 187 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKT 262 (265)
Q Consensus 187 ~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k~ 262 (265)
+|||++|+++||+|+|+|++++|+|||+.|++++|.+.||..+|++|+.+.+.+++.+++..+.+|++.+..|+..
T Consensus 122 q~aI~~Gd~~TGvTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~~~~~Q~e~ 197 (307)
T COG0223 122 QWAILNGDTETGVTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTLTPIPQDEE 197 (307)
T ss_pred HHHHHcCCcccceEEEEccccCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888754
No 14
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=1.5e-41 Score=293.01 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=149.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC----CchHHHHHHHhh-
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~l~~~l~- 113 (265)
|||+||+||.+++++.+++++.++...++|++|||++++ ......+.+.++|...+.... +..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 799999999999999999999887766789999999854 456788999999988766432 123567888887
Q ss_pred -CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHh
Q 024606 114 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 192 (265)
Q Consensus 114 -~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~ 192 (265)
++|++|++||++ +||+++++.++.++||+|||+||+|||++|++||+++
T Consensus 78 ~~~Dl~v~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (181)
T PF00551_consen 78 LNPDLIVVAGYGR------------------------------ILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILN 127 (181)
T ss_dssp TT-SEEEESS-SS---------------------------------HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHH
T ss_pred hccceeehhhhHH------------------------------HhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcC
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024606 193 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAI 246 (265)
Q Consensus 193 G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai 246 (265)
|++++|+|+|++++++|+|+||.|++++|.++||.++|.+|+.+++.+++.++|
T Consensus 128 g~~~~G~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 128 GEKETGVTVHFMDEGLDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp TSSEEEEEEEEE-SSTTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeEEEEecccCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999986
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=2.4e-40 Score=308.10 Aligned_cols=184 Identities=24% Similarity=0.314 Sum_probs=164.1
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEECCCCCchHHHHHHH
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
||||+||||+.. .||++|++. .++|++|+|++|++. .+++.++|+++|||++. +.+ .+++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~-~~~--~~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVIT-PAD--PNDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEc-ccc--CCCHHHHHH
Confidence 589999999873 378888764 378999999987653 35899999999999975 222 334567777
Q ss_pred hh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHH
Q 024606 112 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQA 189 (265)
Q Consensus 112 l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~a 189 (265)
++ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++||
T Consensus 73 l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~a 122 (312)
T PRK06988 73 VAAAAPDFIFSFYYRH------------------------------MIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWA 122 (312)
T ss_pred HHhcCCCEEEEehhcc------------------------------ccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHH
Confidence 76 899999999999 8999999999999999999999999999999999
Q ss_pred HHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 024606 190 FDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 260 (265)
Q Consensus 190 i~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~ 260 (265)
|++|++++|+|+|+|++++|+|||+.|++++|.++||..+|++|+...+.+++.+++..+.+|++.+.+|+
T Consensus 123 i~~g~~~tGvTih~~~~~~D~G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~Q~ 193 (312)
T PRK06988 123 VLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEAPHLPND 193 (312)
T ss_pred HHcCCCceEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988777765
No 16
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=3.4e-40 Score=306.33 Aligned_cols=184 Identities=25% Similarity=0.355 Sum_probs=163.9
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEECCCCCchHHHHH
Q 024606 39 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 109 (265)
Q Consensus 39 ~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~ 109 (265)
|||+||||+.. .+|+.|++. .++|++|+|.++++. .+++.++|+++|||++... + .+++++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~-~--~~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE-K--LRDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC-C--CCCHHHH
Confidence 79999999874 367777653 378999999876542 3679999999999997532 2 2345677
Q ss_pred HHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHH
Q 024606 110 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 187 (265)
Q Consensus 110 ~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~ 187 (265)
+.++ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~ 121 (309)
T PRK00005 72 AELAALNADVIVVVAYGQ------------------------------ILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ 121 (309)
T ss_pred HHHHhcCcCEEEEehhhc------------------------------ccCHHHHhcCCCCEEEEeCcccccCCCccHHH
Confidence 7776 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCc
Q 024606 188 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNK 261 (265)
Q Consensus 188 ~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k 261 (265)
|||++|++++|+|+|+|++++|+|||+.|++++|.++||.++|++|+.+++.+++.++++.+.+|++.+.+|+.
T Consensus 122 wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~Q~~ 195 (309)
T PRK00005 122 RAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGLEDGTLTPIPQDE 195 (309)
T ss_pred HHHHcCCCeEEEEEEEECCcccCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888764
No 17
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=5e-40 Score=305.96 Aligned_cols=184 Identities=26% Similarity=0.382 Sum_probs=162.4
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC-------CcHHHHHHHHcCCCEEEECCCCCchHHHHH
Q 024606 39 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 109 (265)
Q Consensus 39 ~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~ 109 (265)
|||+||||+.. .+|++|++. +++|++|+|+++++. .+++.++|+++|||++.... .+.++++
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~---~~~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEK---QRQLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCC---CCcHHHH
Confidence 69999999874 367776653 379999999887542 36799999999999986432 2223556
Q ss_pred HHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHH
Q 024606 110 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 187 (265)
Q Consensus 110 ~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~ 187 (265)
+.++ ++|++|+++|++ |||+++++.+++++||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~ 121 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGK------------------------------ILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQ 121 (313)
T ss_pred HHHHhhCCCEEEEccchh------------------------------hCCHHHHhhccCCEEEecCccccCCCCccHHH
Confidence 6665 899999999999 89999999999999999999999999999999
Q ss_pred HHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCc
Q 024606 188 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNK 261 (265)
Q Consensus 188 ~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k 261 (265)
|||++|++++|+|+|+|++++|+|||+.|++++|.++||..+|++|+..++.+++.+++..+.+|++.+.+|+.
T Consensus 122 wai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~~~~~~~~Q~~ 195 (313)
T TIGR00460 122 RAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKELPEGKNKPEPQDA 195 (313)
T ss_pred HHHHCCCCeEEEEEEEEccccCCCCeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777764
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=2.3e-37 Score=312.06 Aligned_cols=185 Identities=22% Similarity=0.270 Sum_probs=164.5
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHh
Q 024606 39 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 39 ~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
|||+||||+.. .+|++|++. .++|++|+|.+|++. .+++.++|+++|||++... + .+++++++.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~-~--~~~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPE-D--VNHPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeC-C--CCcHHHHHHH
Confidence 69999998874 357777653 378999999887643 3579999999999998633 2 2345667777
Q ss_pred h--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHH
Q 024606 113 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 190 (265)
Q Consensus 113 ~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai 190 (265)
+ ++|++|+++|++ |||+++|+.++.|+||+|||+||+|||++|++|||
T Consensus 72 ~~~~~D~iv~~~~~~------------------------------ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai 121 (660)
T PRK08125 72 RELAPDVIFSFYYRN------------------------------LLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (660)
T ss_pred HhcCCCEEEEccccc------------------------------cCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHH
Confidence 6 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCce
Q 024606 191 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKT 262 (265)
Q Consensus 191 ~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~k~ 262 (265)
++|++++|+|+|+|++++|+|||+.|++++|.++||..+|++|+.+.+.+++.++++.+.+|++.+.+|+..
T Consensus 122 ~~g~~~~GvTi~~~~~~~D~G~I~~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~~~~~Q~~~ 193 (660)
T PRK08125 122 VNGETETGVTLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIPQDES 193 (660)
T ss_pred HcCCCcEEEEEEEECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998888753
No 19
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=264.62 Aligned_cols=175 Identities=23% Similarity=0.316 Sum_probs=146.7
Q ss_pred CceEEEEEeCC-c-hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH-HcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 38 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 38 ~~rIav~~Sg~-g-~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~-~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
|+||.|++... + .|++.|++.- +++++++.||.++... +++ .+++|...++- .+.+.+++.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIARK--NDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLDV-----AERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhhc--cCcceEEEEeccCCcc--------cccccccccccCcch-----hhhHHhhhcC
Confidence 58999999876 3 5899998864 4668999999987742 222 23444332221 1234455668
Q ss_pred CCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHhCC
Q 024606 115 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 194 (265)
Q Consensus 115 ~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~ 194 (265)
+|++|+++|++ |||+++++.+ ++||+|||+||+|||++|++|||++|+
T Consensus 66 ~DliVvvayg~------------------------------ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe 113 (245)
T PRK07579 66 YDLVLSFHCKQ------------------------------RFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL 113 (245)
T ss_pred CCEEEEchhhc------------------------------cCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC
Confidence 99999999999 8889999976 599999999999999999999999998
Q ss_pred CEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 024606 195 KLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 260 (265)
Q Consensus 195 ~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~~~~~~ 260 (265)
+ +|+|+|+|++++|+|||+.|++++|.++||.++|++|+..++.+++.+++..+.+|++.+.+|+
T Consensus 114 ~-tGvTih~mde~lDtGdIi~Q~~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~~~~~q~ 178 (245)
T PRK07579 114 K-IGATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLEHFDAIRDGSYTAKKPA 178 (245)
T ss_pred e-EEEEEEEEcCCCCCCCeeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 5 9999999999999999999999999999999999999999999999999999999988776654
No 20
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.2e-24 Score=194.27 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=139.8
Q ss_pred ceEEEEEeCCch--hHHHHHHHHHcCCCCceEEEEeeCCCCC-------CCcHHHHHHHHcCCCEEEECCCCCchHHHHH
Q 024606 39 YKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEELL 109 (265)
Q Consensus 39 ~rIav~~Sg~g~--~l~~ll~~~~~~~l~~~I~~Vit~~~~~-------~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~ 109 (265)
+.+.+++|...+ -++.++.+. +.+.+++.++.. ..+|+...|...|.++..+-...... +
T Consensus 7 ~nv~~~~sd~~~~~~~~~l~~~~-------~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~~-~--- 75 (338)
T KOG3082|consen 7 LNVIFLGSDEFSIPILRKLIGCV-------QRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKNF-H--- 75 (338)
T ss_pred cCcchhccccccchhhhhHHHHH-------HhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhcc-c---
Confidence 567788887754 466777653 334456654321 13566677777888876543211000 1
Q ss_pred HHhh-CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHH
Q 024606 110 ELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 188 (265)
Q Consensus 110 ~~l~-~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ 188 (265)
+... +.|++|.|+|++ ++|.++|..+++|+||+|||+||+|||++|+++
T Consensus 76 d~~~~~~~l~ItaSfGr------------------------------llp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~ 125 (338)
T KOG3082|consen 76 DLMRPDDQLAITASFGR------------------------------LLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQR 125 (338)
T ss_pred cccCCCcceEEEeehhc------------------------------cCcHHHHhhCCcceeecChhhcccccCcchHHH
Confidence 2333 689999999999 899999999999999999999999999999999
Q ss_pred HHHhCCCEeEEEEEEecC-ccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024606 189 AFDAGVKLIGATSHFVTE-ELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCEL 252 (265)
Q Consensus 189 ai~~G~~~~GvTvH~v~~-~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g 252 (265)
|+++|++.||||+.+++. ++|.|+|++|+.++|++..|..+|..-+...+.+++.+.+..+.++
T Consensus 126 all~GD~~TGVTI~~i~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~dq 190 (338)
T KOG3082|consen 126 ALLNGDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPELTASLSSLGANLLIRSLYNLNDQ 190 (338)
T ss_pred HHhcCCcccceEEEEecccccccccceecceeccCccccchHHHHHHHhccchhhHHhhccchhh
Confidence 999999999999999997 8999999999999999999999999999999999999999988654
No 21
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=188.45 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=148.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEECC--CCCchHHHHHHHhh--
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA--KENEREEELLELVQ-- 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-~~~v~~~a~~~gIP~~~~~~--~~~~~~~~l~~~l~-- 113 (265)
|||||+|..-. -+++...++.. .+||++|+|-+|+.. ..++.--|++-|+|++..++ +.+..-+++++..+
T Consensus 1 mkiaiigqs~f--g~~vy~~lrk~--gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~~ 76 (881)
T KOG2452|consen 1 MKIAVIGQSLF--GQEVYCHLRKE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQAL 76 (881)
T ss_pred CeeEEechhhh--hHHHHHHHHhc--CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHhh
Confidence 78999875331 13333333322 489999999887643 45566668889999987542 22222356666665
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHhC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAG 193 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G 193 (265)
.+++-|+--..| +||-++++.++++.|-.|||+||+.||++.++|.++.|
T Consensus 77 gaelnvlpfcsq------------------------------fip~ei~~ap~~~siiyhps~lp~hrgasainwtli~g 126 (881)
T KOG2452|consen 77 GAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHG 126 (881)
T ss_pred cccccccchhhh------------------------------ccchhhcccccCCceeeccccCccccCccccceEEEec
Confidence 789988887777 77777889999999999999999999999999999999
Q ss_pred CCEeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHhCCe
Q 024606 194 VKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQK-SEDVEKQCLAKAIKSYCELRV 254 (265)
Q Consensus 194 ~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~r-l~~~~~~ll~~ai~~i~~g~~ 254 (265)
+++.|.+++|.|+++|+|||++|+++.+.++||..+||.| +...+...+.++++.|++|+.
T Consensus 127 d~~~g~sifwaddgldtg~~llqk~c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~gka 188 (881)
T KOG2452|consen 127 DKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGKA 188 (881)
T ss_pred cccCceEEEeecCCccccchhhhhhcccCCCccHHHHHHhhcChHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999 578999999999999999865
No 22
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.82 E-value=0.027 Score=47.78 Aligned_cols=118 Identities=15% Similarity=0.252 Sum_probs=68.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCC--CCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHH
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPNSHVI----RFLERHGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~--~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
..||+++|-+.+.....++..+.. ++.++ .+++.+.- +.+..+. +.++++|-.+.... .+.+.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~~-~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e~ 70 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGMEV-VLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEEA 70 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSEE-EEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCEE-EEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHHh
Confidence 478999886334445666655432 34663 34543320 1112344 55566676665532 24456
Q ss_pred hhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 024606 112 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 112 l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG 182 (265)
++++|+|..-.|... +. -|.+..+.-|..+.+..++++..+...+-+|| ||.+||
T Consensus 71 l~~aDvvy~~~~~s~---------~~-----~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 71 LKGADVVYTDRWQSM---------GD-----KERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp HTT-SEEEEESSSCT---------TS-----GGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred cCCCCEEEEcCcccc---------cc-----hHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 779999999988720 00 01122333455579999999998889999998 688888
No 23
>PLN02342 ornithine carbamoyltransferase
Probab=95.03 E-value=0.19 Score=48.24 Aligned_cols=119 Identities=15% Similarity=0.209 Sum_probs=68.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCC-CEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI-PYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gI-P~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
..||+++|-+. ..+..++.++. .++.++. +++.+.-.+...+.+.|++.|. .+... .++.+.++++|
T Consensus 194 glkva~vGD~~-nva~Sli~~~~--~~G~~v~-~~~P~~~~~~~~~~~~a~~~g~~~~~~~--------~d~~eav~~aD 261 (348)
T PLN02342 194 GTKVVYVGDGN-NIVHSWLLLAA--VLPFHFV-CACPKGYEPDAKTVEKARAAGISKIEIT--------NDPAEAVKGAD 261 (348)
T ss_pred CCEEEEECCCc-hhHHHHHHHHH--HcCCEEE-EECCcccccCHHHHHHHHHhCCCcEEEE--------cCHHHHhCCCC
Confidence 37888876543 23444554432 2345653 3333221223446667777665 33321 12445677999
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
+|..-.|....= .+.+ +.....+..|.+..++++..+..++-+|| ||.+||.
T Consensus 262 Vvy~~~W~s~~~--~e~~-----------~~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg~ 313 (348)
T PLN02342 262 VVYTDVWASMGQ--KEEA-----------EKRKKAFQGFQVNEALMKLAGPQAYFMHC--LPAERGV 313 (348)
T ss_pred EEEECCcccccc--chhh-----------HHHHHhccCCccCHHHHhccCCCcEEeCC--CCcCCCc
Confidence 998887754211 1100 11123345678999999999888999999 7888874
No 24
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.52 E-value=0.39 Score=45.70 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=68.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|-+....+..++.++. .+++++. +++.+.-.+...+. ++|++.|..+.... ++.+.++
T Consensus 155 g~kia~vGD~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~ 223 (332)
T PRK04284 155 DIKFTYVGDGRNNVANALMQGAA--IMGMDFH-LVCPKELNPDDELLNKCKEIAAETGGKITITD--------DIDEGVK 223 (332)
T ss_pred CcEEEEecCCCcchHHHHHHHHH--HcCCEEE-EECCccccCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888887642223445554432 2346664 33332111222333 44556777665432 2345677
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcC-CCeEEecCCCCCCCCCC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG-KDVINIHHGLLPSFKGG 183 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~-~~~iNiHpslLP~yRG~ 183 (265)
++|+|..-.|...= . ..+ . .+.....+..|.+.+++++..+ ..++-+|| ||.+||.
T Consensus 224 ~aDvvy~~~w~~~~------~-~~~----~-~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~ 280 (332)
T PRK04284 224 GSDVIYTDVWVSMG------E-PDE----V-WEERIKLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDL 280 (332)
T ss_pred CCCEEEECCcccCc------c-chh----h-HHHHHHhccCCcCCHHHHhhcCCCCcEEECC--CCCCCCc
Confidence 99999887775410 0 000 0 0112345667899999999875 47999998 6899885
No 25
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=93.52 E-value=0.67 Score=44.26 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=65.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH----HcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE----RHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~----~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|-+. ..+..++..+. .++.++. +++.+.-.....+.+.|+ .+|..+.... ++.+.++
T Consensus 154 glkv~~vGD~~-~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~eav~ 221 (338)
T PRK02255 154 DCKVVFVGDAT-QVCVSLMFIAT--KMGMDFV-HFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD--------DVDEAVK 221 (338)
T ss_pred CCEEEEECCCc-hHHHHHHHHHH--hCCCEEE-EECCCccccCHHHHHHHHHHHHhcCCeEEEEc--------CHHHHhC
Confidence 47888887543 23444444432 2345653 333221112234444443 4566554422 2445677
Q ss_pred CCCEEEEEecC-CCCcchhhhhhhhhhhhhhcccCccccccc-ccCChhHHhhcCCCeEEecCCCCCCCCC
Q 024606 114 NTDFLVLARYM-QPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLRSYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 114 ~~D~vv~ag~~-~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~-~il~~~il~~~~~~~iNiHpslLP~yRG 182 (265)
++|+|..-.|. .. .-| .+.+..+..|+. |.+..++++..+.+++-+|| ||.+||
T Consensus 222 ~aDvvy~~~w~~~~-~~~------------~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp--LP~~Rg 277 (338)
T PRK02255 222 DADFVYTDVWYGLY-DAE------------LSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC--LPATRG 277 (338)
T ss_pred CCCEEEEcccHhhc-cch------------hhHHHHHHhhCCCceECHHHHhccCCCCEEeCC--CCCcCC
Confidence 99999887764 10 000 001112233444 89999999998888999998 577776
No 26
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=93.01 E-value=1.1 Score=42.12 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=39.4
Q ss_pred HHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 024606 108 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 108 l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG 182 (265)
+.+.++++|+|..-.|.+. + . +. ..+.....+..|.+.+++++..+.+++-+|| ||..||
T Consensus 210 ~~~a~~~aDvvy~~~w~~~---~------~---~~-~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp--lP~~rg 269 (304)
T TIGR00658 210 PVEAVKGADVIYTDVWVSM---G------E---ED-KKEERLKLFRPYQVNEELMELAKPEVIFMHC--LPAHRG 269 (304)
T ss_pred HHHHhCCCCEEEEcCcccC---c------c---cc-ccHHHHHHhcCCcCCHHHHhhcCCCCEEECC--CCCCCC
Confidence 3456668999987665431 0 0 00 0112233456779999999999889999998 477775
No 27
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=92.72 E-value=1.1 Score=42.08 Aligned_cols=118 Identities=15% Similarity=0.249 Sum_probs=63.7
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHH-HHHHcCCCEEEECCCCCchHHHHHHHhhCCCE
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR-FLERHGIPYHYLCAKENEREEELLELVQNTDF 117 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~-~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~ 117 (265)
.||+++|-.+ ..+..++..+. .+++++. +++.+.-.+...+.+ .+++.|..+.... ++.+.++++|+
T Consensus 153 l~i~~vGd~~-~v~~Sl~~~l~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~~aDv 220 (304)
T PRK00779 153 LKVAWVGDGN-NVANSLLLAAA--LLGFDLR-VATPKGYEPDPEIVEKIAKETGASIEVTH--------DPKEAVKGADV 220 (304)
T ss_pred cEEEEEeCCC-ccHHHHHHHHH--HcCCEEE-EECCcccCCCHHHHHHHHHHcCCeEEEEc--------CHHHHhCCCCE
Confidence 6777776522 23444444432 1245543 232221111222333 2666676654321 24456679999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 118 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 118 vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
|..-.|...= -+ .. ....+.-+..|.+..++++..+.+++-+|| ||.+||.
T Consensus 221 vy~~~w~~~~-~~-~~-----------~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 221 VYTDVWVSMG-QE-AE-----------AEERLKAFAPYQVNEELMALAKPDAIFMHC--LPAHRGE 271 (304)
T ss_pred EEecCccccc-cc-hh-----------HHHHHHHhcccCCCHHHHHhcCCCeEEecC--CCccCCC
Confidence 9887775410 00 00 011223456678999999988888999996 5777763
No 28
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=92.44 E-value=1.2 Score=40.26 Aligned_cols=79 Identities=25% Similarity=0.272 Sum_probs=50.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCC--------Cc-HHHHHHHHcCCCEEEECCCC-Cch-HHH
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NER-EEE 107 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~--------~~-~v~~~a~~~gIP~~~~~~~~-~~~-~~~ 107 (265)
||++.|.||+.-..-++..+++.| ++|.++++-.+... |. .+...|+..|||+..+.... ..+ -++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 688889998753355667777766 78887777554333 22 25667888999998876432 111 245
Q ss_pred HHHHhh--CCCEEEE
Q 024606 108 LLELVQ--NTDFLVL 120 (265)
Q Consensus 108 l~~~l~--~~D~vv~ 120 (265)
+.+.+. ++|.|+.
T Consensus 78 L~~~l~~l~~d~iv~ 92 (223)
T COG2102 78 LKEALRRLKVDGIVA 92 (223)
T ss_pred HHHHHHhCcccEEEE
Confidence 666666 6777764
No 29
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=92.18 E-value=1.2 Score=42.42 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=68.4
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|-+.-.....++.++. .++.++. +++.+.-.+...+. +++++.|..+.... ++.+.++
T Consensus 156 gl~ia~vGD~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~ 224 (334)
T PRK01713 156 EISYVYIGDARNNMGNSLLLIGA--KLGMDVR-ICAPKALLPEASLVEMCEKFAKESGARITVTD--------DIDKAVK 224 (334)
T ss_pred CcEEEEECCCccCHHHHHHHHHH--HcCCEEE-EECCchhcCCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888887642123444555443 2356664 44433211222233 45556787765432 2456677
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeEEecCCCCCCCCCC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~-~~~~iNiHpslLP~yRG~ 183 (265)
++|+|..-.|... .-+.+ +.+.....+..|.+..++++.. +..++-+|| ||.+||.
T Consensus 225 ~aDvVyt~~w~sm-~~~~~-----------~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 225 GVDFVHTDVWVSM-GEPLE-----------TWGERIKLLMPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred CCCEEEEcceeec-ccchh-----------hHHHHHHhccCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 9999988766431 00000 0011223455678999999976 677999998 5898875
No 30
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=91.58 E-value=3.1 Score=39.73 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=62.8
Q ss_pred CceEEEEEeCCch-hHHHHHHHHHcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~g~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
..||+++|.+..+ .+..++..+. ..++.++. +++ ++.- ....+.+.++++|..+.... .+.+.++++
T Consensus 159 g~kia~vGD~~~~rv~~Sl~~~l~-~~~g~~v~-~~~-P~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~~a 227 (338)
T PRK08192 159 GMHIAMVGDLKFGRTVHSLSRLLC-MYKNVSFT-LVS-PKELAMPDYVISDIENAGHKITITD--------QLEGNLDKA 227 (338)
T ss_pred CCEEEEECcCCCCchHHHHHHHHH-HhcCCEEE-EEC-CccccCCHHHHHHHHHcCCeEEEEc--------CHHHHHccC
Confidence 3788888865312 2333333211 01134553 333 3221 23456677777776665432 234567799
Q ss_pred CEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHh-hcCCCeEEecCCCCCCCCC
Q 024606 116 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR-SYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 116 D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~-~~~~~~iNiHpslLP~yRG 182 (265)
|+|..-. ++ .+.+...+. ...++..|.+..++++ ..+..++-+|| ||++||
T Consensus 228 Dvvyt~~-~q-----~e~~~~~~~--------~~~~~~~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 228 DILYLTR-IQ-----EERFPSQEE--------ANKYRGKFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred CEEEEcC-cc-----cccccchHH--------HHHhhhccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 9997643 22 121111111 1112234799999994 46778999998 567755
No 31
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=91.43 E-value=1.7 Score=40.77 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=64.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|-+. ..+..++.++. .+++++. +++.+.-.+...+. ++++++|..+...+. . +.++
T Consensus 147 g~kva~vGD~~-~v~~S~~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d--------~-~a~~ 213 (302)
T PRK14805 147 KVKLAYVGDGN-NVTHSLMYGAA--ILGATMT-VICPPGHFPDGQIVAEAQELAAKSGGKLVLTSD--------I-EAIE 213 (302)
T ss_pred CcEEEEEcCCC-ccHHHHHHHHH--HcCCEEE-EECCchhcCCHHHHHHHHHHHHHcCCEEEEEcC--------H-HHHC
Confidence 37888887543 12344444432 2346653 33332211223333 345566776654321 1 3466
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
++|+|..-.|.+. + ..-+.+-..+.+..|.+..++++..+.. +-+|| ||.+||.
T Consensus 214 ~aDvvy~~~w~~~-~------------~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg~ 267 (302)
T PRK14805 214 GHDAIYTDTWISM-G------------DDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRGV 267 (302)
T ss_pred CCCEEEeeceEeC-C------------CccccHHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCCC
Confidence 9999988677541 0 0001112234455678999999987766 88998 5778763
No 32
>PLN02527 aspartate carbamoyltransferase
Probab=91.21 E-value=2.2 Score=40.07 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=65.1
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
..||+++|-+. +-.+..++.++.. -.+.++. +++.+.-.....+.+.+++.|..+.... ++.+.++++|
T Consensus 151 g~kva~vGD~~~~rv~~Sl~~~~~~-~~g~~v~-~~~P~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~~aD 220 (306)
T PLN02527 151 GIKVGLVGDLANGRTVRSLAYLLAK-YEDVKIY-FVAPDVVKMKDDIKDYLTSKGVEWEESS--------DLMEVASKCD 220 (306)
T ss_pred CCEEEEECCCCCChhHHHHHHHHHh-cCCCEEE-EECCCccCCCHHHHHHHHHcCCEEEEEc--------CHHHHhCCCC
Confidence 37888888652 2234445444321 0134543 3333211123456677777787665432 2446677999
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG 182 (265)
+|..-. ++ .+..... . +.....+..|.+..++++..+.+++-+||.. ||
T Consensus 221 vvyt~~-~q-----~e~~~~~--~-----~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP----Rg 269 (306)
T PLN02527 221 VLYQTR-IQ-----RERFGER--I-----DLYEAARGKYIVDKKVMDVLPKHAVVMHPLP----RL 269 (306)
T ss_pred EEEECC-cc-----hhhhcch--H-----HHHHHhCCCceECHHHHhccCCCCEEECCCC----Cc
Confidence 997743 23 1111110 0 0011223457999999999888899999965 77
No 33
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.21 E-value=1.3 Score=41.79 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=68.6
Q ss_pred chhHHHHHHHHH----cCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCC-CEEEECCCCCch----------HHHHHHHh
Q 024606 49 EHCLVDFLYGWQ----EGKLPVEITCVISNHD-RGPNSHVIRFLERHGI-PYHYLCAKENER----------EEELLELV 112 (265)
Q Consensus 49 g~~l~~ll~~~~----~~~l~~~I~~Vit~~~-~~~~~~v~~~a~~~gI-P~~~~~~~~~~~----------~~~l~~~l 112 (265)
.|..|+|++.+. .|.+..--++.+.+-. .....+....+...|+ -+..+..+.-.. .+++.+.+
T Consensus 136 ~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~ 215 (310)
T PRK13814 136 QHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSL 215 (310)
T ss_pred CCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHh
Confidence 355666665422 3555432334444321 1112446677788898 565554321110 12344566
Q ss_pred hCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccc-cccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 113 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 113 ~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~-~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
+++|+|..-+|.+ +..+.+....-|. .|.+..++++..+..++-+|| ||.+||.
T Consensus 216 ~~aDvvy~~~~~~---------------er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 216 LNSDVIVTLRLQK---------------ERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred CCCCEEEECcccc---------------ccccchhHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 6899999888754 1112222233344 489999999998889999998 6888874
No 34
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.21 E-value=0.73 Score=43.42 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=45.0
Q ss_pred CCceEEEEEeCC-chh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHH--h
Q 024606 37 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--V 112 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~--l 112 (265)
.++||+|+|+|. |+. +..+++ .+ ..++++|+... +++..+++|+++|+|+.+ . .-+++++. +
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~---~~--~velvAVvdid---~es~gla~A~~~Gi~~~~-~-----~ie~LL~~~~~ 68 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR---SE--HLEPGAMVGID---PESDGLARARRLGVATSA-E-----GIDGLLAMPEF 68 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc---CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCccc-C-----CHHHHHhCcCC
Confidence 368999999887 543 333332 22 47898888654 344567889999999753 1 11344442 1
Q ss_pred hCCCEEEEEe
Q 024606 113 QNTDFLVLAR 122 (265)
Q Consensus 113 ~~~D~vv~ag 122 (265)
.+.|+++.+.
T Consensus 69 ~dIDiVf~AT 78 (302)
T PRK08300 69 DDIDIVFDAT 78 (302)
T ss_pred CCCCEEEECC
Confidence 2578887654
No 35
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=90.73 E-value=2.3 Score=39.96 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=68.2
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
..||+++|-+. +..+..++.++. .++.++. +++ ++.- ....+.+.|+++|..+.... ++.+.++++
T Consensus 150 g~~va~vGD~~~~~v~~Sl~~~~a--~~g~~v~-~~~-P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~~a~~~a 217 (301)
T TIGR00670 150 GLKIALVGDLKYGRTVHSLAEALT--RFGVEVY-LIS-PEELRMPKEILEELKAKGIKVRETE--------SLEEVIDEA 217 (301)
T ss_pred CCEEEEEccCCCCcHHHHHHHHHH--HcCCEEE-EEC-CccccCCHHHHHHHHHcCCEEEEEC--------CHHHHhCCC
Confidence 47899888654 223455555442 2345653 333 3221 23456677888887765432 244567799
Q ss_pred CEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 116 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 116 D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
|+|..-+|.. |.+. +.......+..|.+..++++..+.+++-+||.+ ||.
T Consensus 218 Dvvyt~~~~~------er~~--------~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP----Rg~ 267 (301)
T TIGR00670 218 DVLYVTRIQK------ERFP--------DPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP----RVD 267 (301)
T ss_pred CEEEECCccc------cccC--------CHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC----CCc
Confidence 9998766521 1100 001112234467899999999888899999976 764
No 36
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=90.16 E-value=2.4 Score=40.45 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=68.8
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|.+.-..+..++.++. .++.++. +++.+.-.+...+. +.++++|..+.... ++.+.++
T Consensus 156 g~~ia~vGD~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------d~~ea~~ 224 (336)
T PRK03515 156 EMTLAYAGDARNNMGNSLLEAAA--LTGLDLR-LVAPKACWPEAALVTECRALAQKNGGNITLTE--------DIAEGVK 224 (336)
T ss_pred CCEEEEeCCCcCcHHHHHHHHHH--HcCCEEE-EECCchhcCcHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888887542113445555443 2346654 33332211222333 45666787665432 2455677
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeEEecCCCCCCCCCC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~-~~~~iNiHpslLP~yRG~ 183 (265)
++|+|..-.|... +.+. + ..+.....+..|.+..++++.. +.+++-+|| ||.++|.
T Consensus 225 ~aDvvytd~W~sm---------~~~~-~--~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~~ 281 (336)
T PRK03515 225 GADFIYTDVWVSM---------GEPK-E--VWAERIALLRPYQVNSKMMQLTGNPQVKFLHC--LPAFHDD 281 (336)
T ss_pred CCCEEEecCcccC---------cchh-H--HHHHHHHhccCCccCHHHHhcccCCCCEEECC--CCCCCCc
Confidence 9999988777641 0000 0 0111234455789999999984 677999998 6898885
No 37
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=89.74 E-value=0.63 Score=44.50 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 95 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~ 95 (265)
++.||+|+|++-|.. .+.++.+-.-.+++++|+... .....++|+++|||.+
T Consensus 2 ~~~rVgViG~~~G~~---h~~al~~~~~~~eLvaV~d~~----~erA~~~A~~~gi~~y 53 (343)
T TIGR01761 2 DVQSVVVCGTRFGQF---YLAAFAAAPERFELAGILAQG----SERSRALAHRLGVPLY 53 (343)
T ss_pred CCcEEEEEeHHHHHH---HHHHHHhCCCCcEEEEEEcCC----HHHHHHHHHHhCCCcc
Confidence 568999999854432 233332211147999888754 2346789999999943
No 38
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=89.31 E-value=3.1 Score=37.53 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=46.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCC--------C-cHHHHHHHHcCCCEEEECCCC--CchHHH
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE--NEREEE 107 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~--------~-~~v~~~a~~~gIP~~~~~~~~--~~~~~~ 107 (265)
||++++-||+.-+.-+++.+.++ ++|++++|-.+... + .-+...|+..|||.+.+.... ....++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 67888888876556667777654 46777766433221 1 225678899999987644221 112345
Q ss_pred HHHHhh--CCCEEE
Q 024606 108 LLELVQ--NTDFLV 119 (265)
Q Consensus 108 l~~~l~--~~D~vv 119 (265)
+.+.++ .+|.+|
T Consensus 77 l~~~l~~~gv~~vv 90 (223)
T TIGR00290 77 LKGILHTLDVEAVV 90 (223)
T ss_pred HHHHHHHcCCCEEE
Confidence 666665 677765
No 39
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=88.83 E-value=3.9 Score=38.98 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=61.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|-+....+..++..+. .++.++. +++.+.-.+...+. +.|++.|..+.... .+.+.++
T Consensus 155 g~~va~vGd~~~~v~~Sl~~~~~--~~g~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~ea~~ 223 (331)
T PRK02102 155 GLKLAYVGDGRNNMANSLMVGGA--KLGMDVR-ICAPKELWPEEELVALAREIAKETGAKITITE--------DPEEAVK 223 (331)
T ss_pred CCEEEEECCCcccHHHHHHHHHH--HcCCEEE-EECCcccccCHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888876542123444554432 2345543 33322111222233 34555676654422 2345667
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHh-hcCCCeEEecCCC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR-SYGKDVINIHHGL 176 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~-~~~~~~iNiHpsl 176 (265)
++|+|..-.|... . + ..+++.....+..|.+..++++ ..+..++-+||.+
T Consensus 224 ~aDvvyt~~w~~~-~-~-----------~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP 274 (331)
T PRK02102 224 GADVIYTDVWVSM-G-E-----------EDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLP 274 (331)
T ss_pred CCCEEEEcCcccC-c-c-----------ccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCC
Confidence 9999988666431 0 0 0011122344567789999999 4677899999954
No 40
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=88.75 E-value=1.8 Score=38.83 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCC---------cHHHHHHHHcCCCEEEECCC--CCchHHH
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 107 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~~~~ 107 (265)
||++++-||+.-+.-++..+.++ ++|.+++|-.++..+ .-+...|+..|||...+..+ .....++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 79999999876445556666654 577777763322211 23677889999999876633 1222456
Q ss_pred HHHHhh--CCCEEE
Q 024606 108 LLELVQ--NTDFLV 119 (265)
Q Consensus 108 l~~~l~--~~D~vv 119 (265)
+.+.++ +++.++
T Consensus 77 l~~~l~~~~v~~vv 90 (218)
T PF01902_consen 77 LKEALKELKVEAVV 90 (218)
T ss_dssp HHHHHCTC--SEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 777776 567664
No 41
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=88.75 E-value=5.7 Score=37.86 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcc-cCcccccccccCChhHHh
Q 024606 85 RFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSS-KGSLTSYFNMILSGKFLR 163 (265)
Q Consensus 85 ~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~-~~~~s~y~~~il~~~il~ 163 (265)
++|+++|..+.... .+.+.++++|+|..-.|... .+ ....+. ......+..|.+..++++
T Consensus 223 ~~~~~~g~~~~~~~--------d~~ea~~~aDvvy~~~w~~~------~~-----~~~~~~~~~~~~~~~~y~v~~~ll~ 283 (335)
T PRK04523 223 QNAAESGGSLTVSH--------DIDSAYAGADVVYAKSWGAL------PF-----FGNWEPEKPIRDQYQHFIVDERKMA 283 (335)
T ss_pred HHHHHcCCeEEEEc--------CHHHHhCCCCEEEeceeecc------cc-----CCcccccHHHHHhCcCCcCCHHHHh
Confidence 34566676665432 23456679999998888641 00 000000 001134556799999998
Q ss_pred hcCCCeEEecCCCCCCCCC
Q 024606 164 SYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 164 ~~~~~~iNiHpslLP~yRG 182 (265)
..+ .++-+|| ||.+||
T Consensus 284 ~a~-~~i~mHc--LP~~Rg 299 (335)
T PRK04523 284 LTN-NGVFSHC--LPLRRN 299 (335)
T ss_pred CCC-CCEEECC--CCCCCC
Confidence 765 6889998 577776
No 42
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=88.75 E-value=4.3 Score=36.58 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=46.4
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCC--------C-cHHHHHHHHcCCCEEEECCCC--CchHHH
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKE--NEREEE 107 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~--------~-~~v~~~a~~~gIP~~~~~~~~--~~~~~~ 107 (265)
||++++-||+-=+.-+++.+.++ ++|+++++..+... + .-+...|+..|||++.+.... ....++
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~ 76 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVED 76 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHH
Confidence 68999999875444555555543 47777777554321 1 235678899999987654321 111234
Q ss_pred HHHHhh--CCCEEE
Q 024606 108 LLELVQ--NTDFLV 119 (265)
Q Consensus 108 l~~~l~--~~D~vv 119 (265)
+.+.++ .+|-+|
T Consensus 77 l~~~l~~~gv~~vv 90 (222)
T TIGR00289 77 LAGQLGELDVEALC 90 (222)
T ss_pred HHHHHHHcCCCEEE
Confidence 555555 577665
No 43
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.70 E-value=0.98 Score=35.11 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=42.2
Q ss_pred ceEEEEEeCCch--hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--C
Q 024606 39 YKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 114 (265)
Q Consensus 39 ~rIav~~Sg~g~--~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~ 114 (265)
+||+++|.|... .+.++.+. ....++++|+... .....++++++|+|.+ .. +.+++. +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~----~~~~~~~~~~~~~~~~--~~--------~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPD----PERAEAFAEKYGIPVY--TD--------LEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSS----HHHHHHHHHHTTSEEE--SS--------HHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCC----HHHHHHHHHHhcccch--hH--------HHHHHHhhc
Confidence 589999887632 23333332 2247888877643 2346677899999943 21 233444 7
Q ss_pred CCEEEEEecC
Q 024606 115 TDFLVLARYM 124 (265)
Q Consensus 115 ~D~vv~ag~~ 124 (265)
+|+++++.-.
T Consensus 63 ~D~V~I~tp~ 72 (120)
T PF01408_consen 63 VDAVIIATPP 72 (120)
T ss_dssp ESEEEEESSG
T ss_pred CCEEEEecCC
Confidence 9999988743
No 44
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=86.27 E-value=17 Score=35.07 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=69.4
Q ss_pred CceEEEEEeCC-----chh-HHHHHHHHHcCCCCceEEEEeeCCCCC-CCcHHHH----HHHHcCCCEEEECCCCCchHH
Q 024606 38 KYKVAVLASKQ-----EHC-LVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIR----FLERHGIPYHYLCAKENEREE 106 (265)
Q Consensus 38 ~~rIav~~Sg~-----g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~-~~~~v~~----~a~~~gIP~~~~~~~~~~~~~ 106 (265)
..||++.+-+. +.+ ...++..+. .++.++ +++.++.. ....+.+ .|+++|..+....
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~--~~G~~v--~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~-------- 237 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMT--RFGMDV--TLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN-------- 237 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHH--HcCCEE--EEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc--------
Confidence 46888775432 222 334444432 234565 33333221 2333444 4567887765432
Q ss_pred HHHHHhhCCCEEEEEecCCCCc----chh---hhhhhhhhhhhhcccCcccccccccCChhHHhhcC-CCeEEecCCCCC
Q 024606 107 ELLELVQNTDFLVLARYMQPVP----LQK---EAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG-KDVINIHHGLLP 178 (265)
Q Consensus 107 ~l~~~l~~~D~vv~ag~~~~ip----~~~---~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~-~~~iNiHpslLP 178 (265)
++.+.++++|+|..-.|..+=. .+. +.....+.++..-+ -....+..|.+..++++..+ ..++-+|| ||
T Consensus 238 d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~vt~e~l~~a~~~~~i~MHc--LP 314 (357)
T TIGR03316 238 SMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELL-SQNKKHKDWVCTEERMALTHDGEALYMHC--LP 314 (357)
T ss_pred CHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccch-hHHHHhcCCeECHHHHHhcCCCCcEEECC--CC
Confidence 2445677999999887764100 000 00001111111001 11235677899999999987 77999998 68
Q ss_pred CC-CCC
Q 024606 179 SF-KGG 183 (265)
Q Consensus 179 ~y-RG~ 183 (265)
++ ||.
T Consensus 315 ~~~Rg~ 320 (357)
T TIGR03316 315 ADIRGV 320 (357)
T ss_pred CCccCc
Confidence 87 874
No 45
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=86.20 E-value=4.3 Score=37.92 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=33.9
Q ss_pred CceEEEEEeCC-chh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEE
Q 024606 38 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 96 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~ 96 (265)
++||+++|+|. |.. +..+++ .+ +.++++|+... +++...++|+++|+++..
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~ 53 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSA 53 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEE
Confidence 47999999976 442 234433 22 47888877643 234456789999999864
No 46
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=85.57 E-value=8.5 Score=39.04 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=64.3
Q ss_pred CceEEEEEeCCch-hHHHHHHHHHcCCCC-ceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 38 KYKVAVLASKQEH-CLVDFLYGWQEGKLP-VEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 38 ~~rIav~~Sg~g~-~l~~ll~~~~~~~l~-~~I~~Vit~~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
..||+++|-...+ .+..++.++.. ++ +++. ++.++.. ....+.+.|+++|..+.... ++.+.+++
T Consensus 174 glkVa~vGD~~~~rva~Sl~~~l~~--~g~~~v~--l~~P~~~~~p~~~~~~a~~~G~~v~i~~--------d~~eav~~ 241 (525)
T PRK13376 174 FIHIALVGDLLHGRTVHSKVNGLKI--FKNVKVD--LIAPEELAMPEHYVEKMKKNGFEVRIFS--------SIEEYLSQ 241 (525)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHh--cCCcEEE--EECCccccCCHHHHHHHHHcCCeEEEEc--------CHHHHhcc
Confidence 4788888865322 23344443321 22 4543 3333222 23456677778887665432 24456678
Q ss_pred CCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 115 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 115 ~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
+|+. =.-|+- ..|.|+.... ..++ ....+..|.+.+++++..+.+++-+|| ||++||.
T Consensus 242 AD~t-dvw~~~--RiQ~Ermg~~-~~~~-----~~~~~~~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 242 KDVA-KIWYFT--RLQLERMGED-ILEK-----EHILRKAVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred CCcc-ceEEEe--ccccccCCCc-cchh-----HHHHhcCcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 8831 000110 0122222110 0000 001224678999999998888999998 6899984
No 47
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=84.85 E-value=9.2 Score=36.54 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=66.1
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH----HHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..||+++|-..-..+..++.++. .++.++. +++.+.-.+...+. ++++++|..+.... ++.+.++
T Consensus 156 gl~va~vGD~~~~v~~S~~~~~~--~~G~~v~-~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------d~~~a~~ 224 (334)
T PRK12562 156 EMTLVYAGDARNNMGNSMLEAAA--LTGLDLR-LVAPQACWPEASLVAECSALAQKHGGKITLTE--------DIAAGVK 224 (334)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HcCCEEE-EECCcccCCcHHHHHHHHHHHHHcCCeEEEEc--------CHHHHhC
Confidence 47888887542123444444432 2345653 33322111222233 45566776655422 2445677
Q ss_pred CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhc-CCCeEEecCCCCCCCCC
Q 024606 114 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKG 182 (265)
Q Consensus 114 ~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~-~~~~iNiHpslLP~yRG 182 (265)
++|+|..-.|...= -+.+.+ +.....+..|.+..++++.. +..++-+|| ||.+|+
T Consensus 225 ~aDvvyt~~w~sm~-~~~~~~-----------~~~~~~~~~y~v~~ell~~a~~~~~i~mHc--LP~~~~ 280 (334)
T PRK12562 225 GADFIYTDVWVSMG-EPKEKW-----------AERIALLRGYQVNSKMMALTGNPQVKFLHC--LPAFHD 280 (334)
T ss_pred CCCEEEEcCccccc-cchhhH-----------HHHHHhccCCcCCHHHHHhhcCCCCEEECC--CCCCCc
Confidence 99999988874310 000100 11123455678999999985 677999998 688764
No 48
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=84.71 E-value=9.1 Score=33.46 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=35.2
Q ss_pred eEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCC---------cHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~---------~~v~~~a~~~gIP~~~~~ 98 (265)
|++++.||+-=...++..+.+.| .++.++++..+.... ..+...|+..|||...++
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~ 65 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIE 65 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEe
Confidence 67888898742223333444444 678887765432211 246788999999998775
No 49
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=82.83 E-value=2.4 Score=35.32 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=47.3
Q ss_pred CCceEEEEEeCCc--hh-HHHHHHHHHcCCCCceE--EEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHH
Q 024606 37 PKYKVAVLASKQE--HC-LVDFLYGWQEGKLPVEI--TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 37 ~~~rIav~~Sg~g--~~-l~~ll~~~~~~~l~~~I--~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
+++||.|+..|+. |. .+++++.+... +.+| +++-..+..+.+....+.++++||++.....+ .+.+.
T Consensus 1 ~~~kVLFVC~gN~cRSpmAE~l~~~~~~~--~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k------~i~~~ 72 (139)
T COG0394 1 MMMKVLFVCTGNICRSPMAEALLRHLAPD--NVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSK------QLTEE 72 (139)
T ss_pred CCceEEEEcCCCcccCHHHHHHHHHhccC--CeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCc------cCchh
Confidence 3689999999884 44 45666654332 2333 23222232334567889999999998631111 12222
Q ss_pred h-hCCCEEEEEecCC
Q 024606 112 V-QNTDFLVLARYMQ 125 (265)
Q Consensus 112 l-~~~D~vv~ag~~~ 125 (265)
. .++|+||...-..
T Consensus 73 ~~~~~DlIitmd~~~ 87 (139)
T COG0394 73 DFDEFDLIITMDESN 87 (139)
T ss_pred hhhhCCEEEEeChHH
Confidence 2 3799999876433
No 50
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=82.20 E-value=5.8 Score=35.92 Aligned_cols=64 Identities=27% Similarity=0.409 Sum_probs=41.1
Q ss_pred CCCCceEEEEEeCCc--hhHHHHHHHHHc-CCCCceEEEEeeCCCCC--CCcHHHHHHHHcCCCEEEEC
Q 024606 35 IDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 35 ~~~~~rIav~~Sg~g--~~l~~ll~~~~~-~~l~~~I~~Vit~~~~~--~~~~v~~~a~~~gIP~~~~~ 98 (265)
..+.-||+|..||+. .+|..++..++. ...+.++.+|-.++.-. ....+.++|+++|||++.+.
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~~~~lgI~~~v~~ 94 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEYLESLGVPYHIEE 94 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 455679999999874 355555544432 22346787776655211 12346899999999988653
No 51
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=82.03 E-value=14 Score=36.05 Aligned_cols=55 Identities=7% Similarity=0.066 Sum_probs=34.6
Q ss_pred CceEEEEEe-CC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~S-g~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|+||+|+|| |+ |..-.+++... ++ .++|+++.+++ .-..+.+.|++++-.+..+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~--p~-~f~VvaLaa~~---n~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRN--PD-RFRVVALSAGK---NVELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhC--cc-ccEEEEEEcCC---CHHHHHHHHHHhCCCEEEEc
Confidence 479999996 43 33222223321 22 48999888765 23457888999997766553
No 52
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=81.96 E-value=6.7 Score=35.95 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 113 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~~-~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-- 113 (265)
+++||+|+|.|... -...+.++.+ ++. +++++|+... .....++|+++|++.. +. .+.++++
T Consensus 2 ~~irvgiiG~G~~~-~~~~~~~~~~~~~~-~~~vav~d~~----~~~a~~~a~~~~~~~~-~~--------~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIA-GKAHLPALAALGGG-LELVAVVDRD----PERAEAFAEEFGIAKA-YT--------DLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHH-HHHhHHHHHhCCCc-eEEEEEecCC----HHHHHHHHHHcCCCcc-cC--------CHHHHhcCC
Confidence 57899999988421 1122223322 211 5777777644 2347889999999922 21 1334555
Q ss_pred CCCEEEEEe
Q 024606 114 NTDFLVLAR 122 (265)
Q Consensus 114 ~~D~vv~ag 122 (265)
++|+|+++.
T Consensus 67 ~iD~V~Iat 75 (342)
T COG0673 67 DIDAVYIAT 75 (342)
T ss_pred CCCEEEEcC
Confidence 478888775
No 53
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=80.53 E-value=15 Score=34.62 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=38.1
Q ss_pred HHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC
Q 024606 108 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 183 (265)
Q Consensus 108 l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~ 183 (265)
+.+.++++|+|..-.|.++ +....+.+ +. +.+.....+..|.+..++++.. +.+-+|| ||.+||.
T Consensus 212 ~~~av~~aDvvy~d~w~~~---~~~~~~~~---~~-~~~~r~~~~~~y~v~~elm~~~--~~~vmH~--lP~~Rg~ 276 (311)
T PRK14804 212 LHKAVSHADYVYTDTWLDM---EFFNDPSY---AD-KKKQRMELMMPYQINSSLMEKT--NAKVMHD--MPIHAGY 276 (311)
T ss_pred HHHHhCCCCEEEeeeeEEC---cccCccch---HH-HHHHHHHhccCCeECHHHHhCC--CCeEeCC--CCCCCCc
Confidence 4456668999988667541 00000000 00 1122334555778999999854 4788998 5888885
No 54
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=79.76 E-value=5.6 Score=29.48 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=37.6
Q ss_pred CceEEEEEeCCchh---HHHHHHHHHcCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCCCEEEECC
Q 024606 38 KYKVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 38 ~~rIav~~Sg~g~~---l~~ll~~~~~~~l~~~I~~Vit~~~-~~~~~~v~~~a~~~gIP~~~~~~ 99 (265)
.+||+|.|+-.... +.+-|+.+.... -.+ .+|+.-. +..+.-..++|+++|+|+..++.
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~--~~~-~lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH--PDM-VLVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC--CCE-EEEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 48999998866532 344455444332 123 3666543 44456688999999999988764
No 55
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=79.74 E-value=20 Score=35.58 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=65.1
Q ss_pred CceEEEEEeCCch-hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~g~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
..||+++|-+..+ .+..++..+.. .++.++. +++.+.-.....+.+.++++|..+.... ++.+.++++|
T Consensus 241 G~kIa~vGD~~~~rv~~Sl~~~la~-~~G~~v~-l~~P~~~~~~~~~~~~~~~~G~~v~~~~--------d~~eav~~AD 310 (429)
T PRK11891 241 GAHIALVGDLKYGRTVHSLVKLLAL-YRGLKFT-LVSPPTLEMPAYIVEQISRNGHVIEQTD--------DLAAGLRGAD 310 (429)
T ss_pred CCEEEEECcCCCChHHHHHHHHHHH-hcCCEEE-EECCCccccCHHHHHHHHhcCCeEEEEc--------CHHHHhCCCC
Confidence 4789998865322 24444444221 1135553 3333221134556677777787665432 2446677999
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhh-cCCCeEEecCCC
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRS-YGKDVINIHHGL 176 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~-~~~~~iNiHpsl 176 (265)
+|....+ + .|. .........+..|.+..++++. .+..++-+||.+
T Consensus 311 VVYt~~~-q-----~er---------~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLP 356 (429)
T PRK11891 311 VVYATRI-Q-----KER---------FADESFEGYTPDFQINQALVDAVCKPDTLIMHPLP 356 (429)
T ss_pred EEEEcCc-h-----hhc---------ccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCC
Confidence 9987553 2 111 0001113455668999999998 788899999954
No 56
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=79.11 E-value=7.4 Score=35.48 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=38.6
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCE
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 117 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~ 117 (265)
||||+|+|.|.- -..+.+.+.+.....++++|+. ++ .....++++..|++.+. ..+++ +.++|+
T Consensus 1 mmrIgIIG~G~i--G~~ia~~l~~~~~~~elv~v~d-~~---~~~a~~~a~~~~~~~~~-------~~~el---l~~~Dv 64 (265)
T PRK13304 1 MLKIGIVGCGAI--ASLITKAILSGRINAELYAFYD-RN---LEKAENLASKTGAKACL-------SIDEL---VEDVDL 64 (265)
T ss_pred CCEEEEECccHH--HHHHHHHHHcCCCCeEEEEEEC-CC---HHHHHHHHHhcCCeeEC-------CHHHH---hcCCCE
Confidence 479999998762 1233333333322467776654 32 22345667777766431 11233 347888
Q ss_pred EEEEe
Q 024606 118 LVLAR 122 (265)
Q Consensus 118 vv~ag 122 (265)
|+.+.
T Consensus 65 Vvi~a 69 (265)
T PRK13304 65 VVECA 69 (265)
T ss_pred EEEcC
Confidence 88775
No 57
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=78.73 E-value=20 Score=32.69 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=48.9
Q ss_pred eEEEEEeC-----CchhHH--HHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCC--chHHHHHH
Q 024606 40 KVAVLASK-----QEHCLV--DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLE 110 (265)
Q Consensus 40 rIav~~Sg-----~g~~l~--~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~--~~~~~l~~ 110 (265)
||+|.+-+ .||.++ +|.+++++. .+++..++... .....+..++.|.++..++...+ ...+++.+
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~----~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~ 74 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQ--GAEVAFACKPL----PGDLIDLLLSAGFPVYELPDESSRYDDALELIN 74 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHC--CCEEEEEeCCC----CHHHHHHHHHcCCeEEEecCCCchhhhHHHHHH
Confidence 35555443 366544 455555322 36776555433 23456788899999988764321 12346777
Q ss_pred Hhh--CCCEEEEEecCC
Q 024606 111 LVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 111 ~l~--~~D~vv~ag~~~ 125 (265)
.++ ++|++|+-+|.-
T Consensus 75 ~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 75 LLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHhcCCCEEEEcCCCC
Confidence 777 799999999953
No 58
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=76.97 E-value=2.1 Score=35.22 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCC
Q 024606 35 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 75 (265)
Q Consensus 35 ~~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~ 75 (265)
..+++||+|+|.|. |++|-..|... | ++|.+|.+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~a--g---~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARA--G---HEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHT--T---SEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHC--C---CeEEEEEeCC
Confidence 45679999999988 77887666542 3 7888887744
No 59
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=76.84 E-value=37 Score=33.29 Aligned_cols=129 Identities=11% Similarity=0.073 Sum_probs=67.4
Q ss_pred CceEEEEEe-----CCchh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHH----HHHHcCCCEEEECCCCCchHHH
Q 024606 38 KYKVAVLAS-----KQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR----FLERHGIPYHYLCAKENEREEE 107 (265)
Q Consensus 38 ~~rIav~~S-----g~g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~----~a~~~gIP~~~~~~~~~~~~~~ 107 (265)
..||++.+. |.+.+ ...++.++. .++.++. +++.+.-.....+.+ .+++.|..+.... +
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~--~lG~~v~-~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~--------d 255 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMT--RFGMDVT-LAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN--------S 255 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHH--HcCCEEE-EECCCccCCCHHHHHHHHHHHHHcCCeEEEEc--------C
Confidence 368998875 33332 334444432 2346653 344331111223334 4667787765432 2
Q ss_pred HHHHhhCCCEEEEEecCCCCcchhhhhhh--------hhhhhhhcccCcccccccccCChhHHhhcCCC-eEEecCCCCC
Q 024606 108 LLELVQNTDFLVLARYMQPVPLQKEAYLG--------YKLLESLSSKGSLTSYFNMILSGKFLRSYGKD-VINIHHGLLP 178 (265)
Q Consensus 108 l~~~l~~~D~vv~ag~~~~ip~~~~~~~~--------~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~-~iNiHpslLP 178 (265)
+.+.++++|+|..-.|..+ ..+.|-+.. ++..+... ......+..|.+..++++..+.+ .+-+|| ||
T Consensus 256 ~~eav~~aDvVYtd~W~sm-~~~~er~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~v~~elm~~a~~~~ai~MHc--LP 331 (395)
T PRK07200 256 MEEAFKDADIVYPKSWAPY-KVMEERTELYRAGDHEGIKALEKEL-LAQNAQHKDWHCTEEMMKLTKDGKALYMHC--LP 331 (395)
T ss_pred HHHHhCCCCEEEEcCeeec-ccccccccccccccchhhhhhhhhh-hHHHHHccCCCcCHHHHhccCCCCcEEECC--CC
Confidence 4456779999988876521 000010000 00000000 01134566789999999988764 999998 57
Q ss_pred CCC
Q 024606 179 SFK 181 (265)
Q Consensus 179 ~yR 181 (265)
.+|
T Consensus 332 a~r 334 (395)
T PRK07200 332 ADI 334 (395)
T ss_pred CCC
Confidence 775
No 60
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=76.22 E-value=13 Score=27.72 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=37.4
Q ss_pred eEEEEEeCCchhHHHHHHHHHc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEE
Q 024606 40 KVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 118 (265)
Q Consensus 40 rIav~~Sg~g~~l~~ll~~~~~-~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~v 118 (265)
||+|+|.|. --.+|+..+.+ |.-+.+|.. ++++ ......+++++.++.+...+ ..+.++++|++
T Consensus 1 kI~iIG~G~--mg~al~~~l~~~g~~~~~v~~-~~~r---~~~~~~~~~~~~~~~~~~~~---------~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIGAGN--MGSALARGLLASGIKPHEVII-VSSR---SPEKAAELAKEYGVQATADD---------NEEAAQEADVV 65 (96)
T ss_dssp EEEEESTSH--HHHHHHHHHHHTTS-GGEEEE-EEES---SHHHHHHHHHHCTTEEESEE---------HHHHHHHTSEE
T ss_pred CEEEECCCH--HHHHHHHHHHHCCCCceeEEe-eccC---cHHHHHHHHHhhccccccCC---------hHHhhccCCEE
Confidence 789997665 22334444332 322356653 4344 23456788888886654311 12344479999
Q ss_pred EEEec
Q 024606 119 VLARY 123 (265)
Q Consensus 119 v~ag~ 123 (265)
+++=-
T Consensus 66 ilav~ 70 (96)
T PF03807_consen 66 ILAVK 70 (96)
T ss_dssp EE-S-
T ss_pred EEEEC
Confidence 98753
No 61
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=76.15 E-value=14 Score=36.25 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=49.0
Q ss_pred eEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCC----CCCCCcHHHHHHHHcCCCEEEECCCCCc---hHHHHHHHh
Q 024606 40 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKENE---REEELLELV 112 (265)
Q Consensus 40 rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~----~~~~~~~v~~~a~~~gIP~~~~~~~~~~---~~~~l~~~l 112 (265)
|+.=.|+-+.+.+.++=.++.++ .+-+.-|++++ ..-+...+.+.|+++|+|+++ +..... ++..+.+.+
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpviv-D~aSg~~v~~e~~l~~~l 210 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIV-DLASGALVDKEPDLREAL 210 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEE-ecCCccccccccchhHHH
Confidence 44444444445566665555444 35666777764 112235588999999999986 422111 345666777
Q ss_pred h-CCCEEEEEe
Q 024606 113 Q-NTDFLVLAR 122 (265)
Q Consensus 113 ~-~~D~vv~ag 122 (265)
+ .+|+|+-.|
T Consensus 211 a~GaDLV~~Sg 221 (395)
T COG1921 211 ALGADLVSFSG 221 (395)
T ss_pred hcCCCEEEEec
Confidence 7 899998665
No 62
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=75.81 E-value=11 Score=37.54 Aligned_cols=55 Identities=5% Similarity=0.039 Sum_probs=35.9
Q ss_pred CCceEEEEEe-CC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEE
Q 024606 37 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 97 (265)
Q Consensus 37 ~~~rIav~~S-g~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~ 97 (265)
.++||++||| |+ |+...+++... ++ .++++++-+++. -.-+.+.|+++.-.+..+
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~--pd-~f~vvaLaag~N---i~lL~~q~~~f~p~~v~v 112 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAEN--PD-KFKVVALAAGSN---VTLLADQVRKFKPKLVAV 112 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhC--cc-ccEEEEEECCCC---HHHHHHHHHHhCCCEEEE
Confidence 3579999999 65 66666666653 22 478888877652 223566677777665544
No 63
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=74.95 E-value=41 Score=31.99 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=69.5
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEECCCCCchHHHHHHHh
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
..+|++++|-|+ .....++.+... +..++. |.+.+.-.++..+.++|++ .|=.+.... +..+.+
T Consensus 152 ~g~k~a~vGDgN-Nv~nSl~~~~a~--~G~dv~-ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~--------d~~eAv 219 (310)
T COG0078 152 KGLKLAYVGDGN-NVANSLLLAAAK--LGMDVR-IATPKGYEPDPEVVEKAKENAKESGGKITLTE--------DPEEAV 219 (310)
T ss_pred cCcEEEEEcCcc-hHHHHHHHHHHH--hCCeEE-EECCCcCCcCHHHHHHHHHHHHhcCCeEEEec--------CHHHHh
Confidence 458999988773 223455544321 235553 4454433345556666654 453333321 134566
Q ss_pred hCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 024606 113 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 113 ~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG 182 (265)
+++|+|..-.|..+ .-|.++ ++....+...|-+.+++++..+...+-+| -||.+||
T Consensus 220 ~gADvvyTDvWvSM-Gee~e~-----------~~~~~~~~~~yQVn~~lm~~a~~~~ifmH--CLPA~rG 275 (310)
T COG0078 220 KGADVVYTDVWVSM-GEEAEA-----------EERRIAFLPPYQVNEELMALAGPDAIFMH--CLPAHRG 275 (310)
T ss_pred CCCCEEEecCcccC-cchhhh-----------HHHHHhhCCCceeCHHHHhhcCCCeEEEe--CCCCCCC
Confidence 68888877666541 001111 12233345556999999999988999999 4899997
No 64
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.55 E-value=10 Score=33.29 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=35.3
Q ss_pred CceEEEEEeCC-chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
++||+|+|+|. |+.+ ..++. .+....+.+ +++++. ......+++++.|+... .. ..+.++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~---~~~~~~~~i-~~~~~~--~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK---TSKEYIEEI-IVSNRS--NVEKLDQLQARYNVSTT--TD--------WKQHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh---CCCCCcCeE-EEECCC--CHHHHHHHHHHcCcEEe--CC--------hHHHHhcC
Confidence 47999999886 3333 23322 232223311 234431 12345666777776432 11 12334589
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+|+++-
T Consensus 68 DiViiav 74 (245)
T PRK07634 68 DTIVLAM 74 (245)
T ss_pred CEEEEec
Confidence 9998874
No 65
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=73.79 E-value=8.8 Score=35.21 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=39.2
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
++||+++|.|. |.. +.+.+..+..++++++|.... .....++++++|++..+ . .-++ ++.++|
T Consensus 6 ~irIGIIG~G~IG~~---~a~~L~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~~~~-~-----~~ee---ll~~~D 69 (271)
T PRK13302 6 ELRVAIAGLGAIGKA---IAQALDRGLPGLTLSAVAVRD----PQRHADFIWGLRRPPPV-V-----PLDQ---LATHAD 69 (271)
T ss_pred eeEEEEECccHHHHH---HHHHHHhcCCCeEEEEEECCC----HHHHHHHHHhcCCCccc-C-----CHHH---HhcCCC
Confidence 48999999987 332 233333221246787665532 22356778888865322 1 1123 334789
Q ss_pred EEEEEe
Q 024606 117 FLVLAR 122 (265)
Q Consensus 117 ~vv~ag 122 (265)
+|+++.
T Consensus 70 ~Vvi~t 75 (271)
T PRK13302 70 IVVEAA 75 (271)
T ss_pred EEEECC
Confidence 888775
No 66
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=72.68 E-value=16 Score=30.99 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=35.9
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~-----~~v~~~a~~~gIP~~~~~ 98 (265)
||+|-.||+. ..|..++..+.. ..+.++.+|..++.-..+ ..+.++|+++|||++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7899999863 345555555543 234588888777643222 358999999999998765
No 67
>PRK10126 tyrosine phosphatase; Provisional
Probab=72.66 E-value=9.6 Score=31.57 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=45.9
Q ss_pred CceEEEEEeCCc--hh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHH-HHhh
Q 024606 38 KYKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL-ELVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~-~~l~ 113 (265)
++||.|+..|+- |. .++++.... +.+.+.-+++.....++.+....+.++++||+... +. ...+. +.++
T Consensus 2 ~~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~--h~----sr~lt~~~~~ 74 (147)
T PRK10126 2 FNNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEG--HC----ARQISRRLCR 74 (147)
T ss_pred CCeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCC--Cc----cccCCHHHhc
Confidence 478999888873 33 345665543 22333334443323334567789999999999642 11 11111 1334
Q ss_pred CCCEEEEEecC
Q 024606 114 NTDFLVLARYM 124 (265)
Q Consensus 114 ~~D~vv~ag~~ 124 (265)
++|+|+...-.
T Consensus 75 ~~DlIl~Md~~ 85 (147)
T PRK10126 75 NYDLILTMEKR 85 (147)
T ss_pred cCCEEEECCHH
Confidence 89999987543
No 68
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=72.31 E-value=24 Score=33.69 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=22.2
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 75 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~ 75 (265)
++||+++|.|. |.. .+.++.+. ...++++|++.+
T Consensus 3 kIRVgIVG~GnIGr~---~a~al~~~-pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRS---VEKAIQQQ-PDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHH---HHHHHHhC-CCcEEEEEEcCC
Confidence 58999999987 432 23333221 247999998865
No 69
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=71.02 E-value=16 Score=33.58 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=44.5
Q ss_pred CceEEEEEeCCchh---HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC----Cch-----H
Q 024606 38 KYKVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NER-----E 105 (265)
Q Consensus 38 ~~rIav~~Sg~g~~---l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~-----~ 105 (265)
||||.+.+.|.|.. +.+|.+.+.+. .+++.. ++.... ......+++|++++.++... +.. .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~v-v~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLY-LGTARG----MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEE-EECCCc----hhhhccccCCCcEEEEeccCcCCCChHHHHHHH
Confidence 58998887666533 33566666542 477764 444321 12344455799988776321 100 0
Q ss_pred -------HHHHHHhh--CCCEEEEEecC
Q 024606 106 -------EELLELVQ--NTDFLVLARYM 124 (265)
Q Consensus 106 -------~~l~~~l~--~~D~vv~ag~~ 124 (265)
..+.+.++ ++|+|++.++.
T Consensus 74 ~~~~~~~~~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 74 FKLLKGVLQARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 12233444 69999988743
No 70
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=70.34 E-value=14 Score=35.59 Aligned_cols=58 Identities=19% Similarity=0.019 Sum_probs=38.4
Q ss_pred CCCceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 36 DPKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 36 ~~~~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
.++.||+|..||+- | .+..++.. . ..++.+|..+........+.++|+++|||.+.++
T Consensus 3 ~~~~kVlVa~SGGvDSsv~a~lL~~--~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 3 ESKKRVLVGMSGGIDSTATCLMLQE--Q---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHH--c---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEe
Confidence 44579999999873 3 33344433 2 3678877765421112457899999999998776
No 71
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=70.15 E-value=44 Score=31.03 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=57.8
Q ss_pred cCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcC----CCEEEECCCCC
Q 024606 32 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHG----IPYHYLCAKEN 102 (265)
Q Consensus 32 ~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~-----~~v~~~a~~~g----IP~~~~~~~~~ 102 (265)
.+.+..+.||||..|.+|..+++++.-+.......++...=+ .--+.+ ...++.+.+.+ .-+..+.+-++
T Consensus 8 ~~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~-~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 8 KPLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPA-SVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred CCCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEec-cccccchHHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 445666799999999999999999887765433355543222 211112 22344555444 55666554433
Q ss_pred c-------hHHHHHHHhhCCCEEEEEecCC
Q 024606 103 E-------REEELLELVQNTDFLVLARYMQ 125 (265)
Q Consensus 103 ~-------~~~~l~~~l~~~D~vv~ag~~~ 125 (265)
+ +++++.+.+.++.+=|+.|-+|
T Consensus 87 s~eDL~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 87 SIEDLWAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred ChHHhcccChHHHHHHHHhCCCCEEEecCC
Confidence 2 3577888887666667788888
No 72
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=70.12 E-value=24 Score=33.16 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=52.8
Q ss_pred cHHHHHHHHcCCCEEEECCCCCch--------HHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCccccc
Q 024606 81 SHVIRFLERHGIPYHYLCAKENER--------EEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSY 152 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~~~~~~--------~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y 152 (265)
.+....+...|+-+..+..+.-.. .+++.+.++++|+|..-+|.. |.... . ..+...+.+
T Consensus 172 ~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~~q~------e~~~~-----~-~~~~~~~~~ 239 (305)
T PRK00856 172 RSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLRVQK------ERMDG-----G-LLPSYEEYK 239 (305)
T ss_pred HHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECCccc------ccccc-----c-chHHHHHHh
Confidence 345667777787766554332110 123345666899998766532 11000 0 011223345
Q ss_pred ccccCChhHHhhcCCCeEEecCCCCCCCCC
Q 024606 153 FNMILSGKFLRSYGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 153 ~~~il~~~il~~~~~~~iNiHpslLP~yRG 182 (265)
..|.+..++++..+..++-+|| ||.+||
T Consensus 240 ~~y~v~~~ll~~a~~~~~~mHc--LPa~Rg 267 (305)
T PRK00856 240 RSYGLTAERLALAKPDAIVMHP--GPVNRG 267 (305)
T ss_pred ccCccCHHHHhhcCCCCEEECC--CCCCCC
Confidence 6789999999988888999998 678876
No 73
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=68.88 E-value=19 Score=32.15 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=21.9
Q ss_pred ceEEEEEeCC--chhHHHHHHHHHcCCCCceEEEEeeCCC
Q 024606 39 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHD 76 (265)
Q Consensus 39 ~rIav~~Sg~--g~~l~~ll~~~~~~~l~~~I~~Vit~~~ 76 (265)
||||+++..+ |+- -+-++.++| +++++++-|+.
T Consensus 1 mKIaiIgAsG~~Gs~--i~~EA~~RG---HeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGSR--ILKEALKRG---HEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHHH--HHHHHHhCC---CeeEEEEeChH
Confidence 7999998643 432 222455454 89999998763
No 74
>PLN03139 formate dehydrogenase; Provisional
Probab=68.38 E-value=1.2e+02 Score=29.52 Aligned_cols=163 Identities=12% Similarity=0.154 Sum_probs=86.4
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
-++|+|+|.|. |..+...+.++ ..+|. +.++... . .+..++.|+... +++.+++.++|
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-----G~~V~--~~d~~~~-~---~~~~~~~g~~~~----------~~l~ell~~sD 257 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-----NCNLL--YHDRLKM-D---PELEKETGAKFE----------EDLDAMLPKCD 257 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-----CCEEE--EECCCCc-c---hhhHhhcCceec----------CCHHHHHhhCC
Confidence 36899999887 55554444442 35653 3343211 0 223344554321 12445666899
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHh
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 192 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~ 192 (265)
+|++.- |..++ ..+++..+.++..+.+.+-+=-| ||. ..+..|+.+
T Consensus 258 vV~l~l-----Plt~~--------------------T~~li~~~~l~~mk~ga~lIN~a-----RG~iVDe~AL~~AL~s 307 (386)
T PLN03139 258 VVVINT-----PLTEK--------------------TRGMFNKERIAKMKKGVLIVNNA-----RGAIMDTQAVADACSS 307 (386)
T ss_pred EEEEeC-----CCCHH--------------------HHHHhCHHHHhhCCCCeEEEECC-----CCchhhHHHHHHHHHc
Confidence 998863 31111 22378889999888764443333 774 456677777
Q ss_pred CCCE-eEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 193 GVKL-IGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 193 G~~~-~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
|.-. .|.-|++-..--..-|......+-+.|.-...+...+ +...+.+.+.+..+.+|+
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~--~r~~~~~~~nl~~~~~G~ 367 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ--LRYAAGVKDMLDRYFKGE 367 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHH--HHHHHHHHHHHHHHHcCC
Confidence 7542 4555555544323334444445555554332222211 222344556666777776
No 75
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=66.34 E-value=26 Score=36.41 Aligned_cols=78 Identities=9% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCceEEEEEeCC-chh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCc----HHHHHHHHc--CCCEEEECCCCCchHHHH
Q 024606 37 PKYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERH--GIPYHYLCAKENEREEEL 108 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~----~v~~~a~~~--gIP~~~~~~~~~~~~~~l 108 (265)
+..||+++|+|. +++ +..|++. | -.+|.+|+++.. .++. .+.+.|++. +|++..++. ..++.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~s---G--~~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDS---G--FPRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhc---C--CCcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 568999999988 554 4455443 5 257878888775 3321 246777764 477766543 234677
Q ss_pred HHHhhCCCEEEEEec
Q 024606 109 LELVQNTDFLVLARY 123 (265)
Q Consensus 109 ~~~l~~~D~vv~ag~ 123 (265)
.+.++..|+|+++.=
T Consensus 199 ~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 199 HEAFEPADWVLYVSD 213 (637)
T ss_pred HHhhcCCcEEEEECC
Confidence 788888999998763
No 76
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=66.14 E-value=44 Score=31.91 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=50.6
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCc----------hHH
Q 024606 39 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----------REE 106 (265)
Q Consensus 39 ~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~----------~~~ 106 (265)
|||.|=..... +.++.++..+++. +++| +||.++. ..+.++++.+|+++..+...... |..
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~--GheV--~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKR--GHEV--LITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhC--CCEE--EEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 67777776554 4578888887653 4676 4555542 35688999999999887643221 233
Q ss_pred HHHHHhh--CCCEEEEEe
Q 024606 107 ELLELVQ--NTDFLVLAR 122 (265)
Q Consensus 107 ~l~~~l~--~~D~vv~ag 122 (265)
++.+.++ +||+++..+
T Consensus 74 ~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHhhCCCEEEecC
Confidence 5555555 799998544
No 77
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=65.87 E-value=14 Score=35.54 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=31.8
Q ss_pred ceEEEEEeCCc-hh-HHHHHHHHHcCCCCceEEEEeeCCCCCCC------------cHHHHHHHHcCCCEEEEC
Q 024606 39 YKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 39 ~rIav~~Sg~g-~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~------------~~v~~~a~~~gIP~~~~~ 98 (265)
|||+|..||+- |. ...||.. +| ++|++|....-...+ ..+.+.|+..|||++.++
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~--~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d 69 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE--QG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVD 69 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH--CT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHHh--hc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEC
Confidence 79999999873 43 3444443 34 799988774422211 227889999999999887
No 78
>PRK07574 formate dehydrogenase; Provisional
Probab=65.87 E-value=1.4e+02 Score=29.16 Aligned_cols=160 Identities=13% Similarity=0.189 Sum_probs=84.5
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCE
Q 024606 39 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 117 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~ 117 (265)
++|+|+|.|. |..+...+.++ ..+|. +.++... + .+..++.|+..+ . ++.++++++|+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-----G~~V~--~~dr~~~---~-~~~~~~~g~~~~--~--------~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-----DVKLH--YTDRHRL---P-EEVEQELGLTYH--V--------SFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCEEE--EECCCCC---c-hhhHhhcCceec--C--------CHHHHhhcCCE
Confidence 6899999887 54444444442 35553 3343211 1 233344554321 1 24456678999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHhC
Q 024606 118 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAG 193 (265)
Q Consensus 118 vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G 193 (265)
|+++- |..++ .++++..+.++.++.+.+=+=-| ||. ..+..|+.+|
T Consensus 252 V~l~l-----Plt~~--------------------T~~li~~~~l~~mk~ga~lIN~a-----RG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHC-----PLHPE--------------------TEHLFDADVLSRMKRGSYLVNTA-----RGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcC-----CCCHH--------------------HHHHhCHHHHhcCCCCcEEEECC-----CCchhhHHHHHHHHHhC
Confidence 98764 21111 23378899999988764333222 674 4567778888
Q ss_pred CC-EeEEEEEEecCccCCCCeeEEEEEecCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 194 VK-LIGATSHFVTEELDAGPIIEQMVERVSHRDN--LRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 194 ~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt--~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
.- ..|.-|++-..-...-+.+....+-+.|.-. ..+-.+++. +...+.+..+.+|+
T Consensus 302 ~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~----~~~~~ni~~~~~G~ 360 (385)
T PRK07574 302 HLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYA----AGTREILECFFEGR 360 (385)
T ss_pred CccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHH----HHHHHHHHHHHcCC
Confidence 53 3555666554433344544444555555432 233333333 33445555555553
No 79
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=65.46 E-value=68 Score=26.69 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=36.0
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEE
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL 97 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-----~~~v~~~a~~~gIP~~~~ 97 (265)
||+|..||+. +.+..++..+... .+.++.+|..+..-.. ...+.++|+.+|||+..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYIL 64 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEE
Confidence 6888899874 3455555443321 1346777766653222 234788999999999876
No 80
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=64.78 E-value=55 Score=32.65 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=57.9
Q ss_pred cCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCc-----HHHHHHHHcC-CCEEEECCCCCc--
Q 024606 32 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHG-IPYHYLCAKENE-- 103 (265)
Q Consensus 32 ~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~-----~v~~~a~~~g-IP~~~~~~~~~~-- 103 (265)
.|-+..+.+|+|..|..|..+++++.-+..-....+|...=| .--+.++ ..++.|.+.+ +-+..+.+-+++
T Consensus 129 kpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt-~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiE 207 (440)
T COG1570 129 KPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPT-LVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIE 207 (440)
T ss_pred CCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEec-cccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHH
Confidence 444666799999999999999999988765443356542211 1111222 2445555555 666666543322
Q ss_pred -----hHHHHHHHhhCCCEEEEEecCC
Q 024606 104 -----REEELLELVQNTDFLVLARYMQ 125 (265)
Q Consensus 104 -----~~~~l~~~l~~~D~vv~ag~~~ 125 (265)
+||.+.+.+.++.+=|+.+-+|
T Consensus 208 DLW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 208 DLWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred HHhccChHHHHHHHHhCCCCeEeeccc
Confidence 3567777777666666677777
No 81
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=64.28 E-value=13 Score=29.98 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=41.0
Q ss_pred ceEEEEEeCCc--hh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHH-HhhC
Q 024606 39 YKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE-LVQN 114 (265)
Q Consensus 39 ~rIav~~Sg~g--~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~-~l~~ 114 (265)
+||.|+..++- |. .++++..+..+++.+.-+++-. .+.+....+.++++||++.. +.- ..+.+ .+++
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~---~~~~p~a~~~l~e~Gid~~~--~~s----~~l~~~~~~~ 71 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEV---SRVHPTAIEVMSEIGIDISG--QTS----KPLENFHPED 71 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCC---CCCCHHHHHHHHHhCCCccc--Ccc----ccCChhHhcC
Confidence 57888887763 33 4566666533322112222221 23456688999999999742 211 11111 2347
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|+||...
T Consensus 72 ~D~iitm~ 79 (126)
T TIGR02689 72 YDVVISLC 79 (126)
T ss_pred CCEEEEeC
Confidence 99999764
No 82
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=64.18 E-value=30 Score=32.04 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=40.7
Q ss_pred CceEEEEEeCCchhHHHHHHHHHc-CCCC-ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQE-GKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~-~~l~-~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
++||+|+|.|+ --++++..+.. |.++ .+| ++|++. +.....+++++|+.+ ..+ ..+...++
T Consensus 1 ~~~IgfIG~G~--Mg~Ai~~gl~~~g~~~~~~I--~v~~~~---~e~~~~l~~~~g~~~--~~~--------~~~~~~~a 63 (266)
T COG0345 1 MMKIGFIGAGN--MGEAILSGLLKSGALPPEEI--IVTNRS---EEKRAALAAEYGVVT--TTD--------NQEAVEEA 63 (266)
T ss_pred CceEEEEccCH--HHHHHHHHHHhcCCCCcceE--EEeCCC---HHHHHHHHHHcCCcc--cCc--------HHHHHhhC
Confidence 47999999776 22455555443 4344 344 567762 334446889999884 221 11234478
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+|+++=
T Consensus 64 dvv~Lav 70 (266)
T COG0345 64 DVVFLAV 70 (266)
T ss_pred CEEEEEe
Confidence 9998885
No 83
>PLN02256 arogenate dehydrogenase
Probab=64.11 E-value=25 Score=32.88 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=46.5
Q ss_pred cCCCcchhHhhhHhhhccccccccCCCCCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHH
Q 024606 9 MSSIPGDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 87 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a 87 (265)
+.|++-+--..++-|.-.+.+..--....++||+|+|.|. |..+...+.. .| .+|.+ +... . ..+.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~--~G---~~V~~-~d~~-~-----~~~~a 74 (304)
T PLN02256 7 PRSLRVRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVK--QG---HTVLA-TSRS-D-----YSDIA 74 (304)
T ss_pred CCCcccccccccCCCChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHh--CC---CEEEE-EECc-c-----HHHHH
Confidence 3344443334455565432222222255678999999886 4433332222 23 46653 3322 1 24677
Q ss_pred HHcCCCEEEECCCCCchHHHHHHHhh-CCCEEEEEe
Q 024606 88 ERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLAR 122 (265)
Q Consensus 88 ~~~gIP~~~~~~~~~~~~~~l~~~l~-~~D~vv~ag 122 (265)
+++|+... . ..++ .+. ++|+|+++-
T Consensus 75 ~~~gv~~~--~-----~~~e---~~~~~aDvVilav 100 (304)
T PLN02256 75 AELGVSFF--R-----DPDD---FCEEHPDVVLLCT 100 (304)
T ss_pred HHcCCeee--C-----CHHH---HhhCCCCEEEEec
Confidence 78887432 1 1122 233 689999875
No 84
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=63.26 E-value=48 Score=32.53 Aligned_cols=55 Identities=5% Similarity=0.076 Sum_probs=37.2
Q ss_pred CceEEEEEeCC--chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~--g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|+||+||||.+ |+...+++.... + .++|+++.+++ .-.-+.+.+++++-.+..+.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~--~-~f~v~~Laa~~---n~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNP--D-HFQVVALSAGK---NVALMVEQILEFRPKFVAID 57 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCc--c-ccEEEEEEcCC---CHHHHHHHHHHcCCCEEEEc
Confidence 46999999954 555555555432 2 48999988866 22357788888887766553
No 85
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=62.33 E-value=35 Score=33.57 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCC-----cHHHHHHHHcCCCEEEEC
Q 024606 37 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 37 ~~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~-----~~v~~~a~~~gIP~~~~~ 98 (265)
+.-||+|..||+. .+|-.++..+.....+.++.++..|+.-.++ ..+.++|+++|||++...
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 3478999999873 3555555544322224688888888743222 347788999999987654
No 86
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=61.53 E-value=15 Score=28.27 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCC
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~ 100 (265)
...++++++|. +.. |+-..|-.+ -.++...|+++|||+.+++++
T Consensus 19 kqt~Kai~kg~--~~~--v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 19 KETLKALKKDQ--VTS--LIIAEDVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred HHHHHHHhcCC--ceE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 55677777764 343 333333222 267899999999999998753
No 87
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=61.05 E-value=26 Score=33.88 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=39.3
Q ss_pred CCceEEEEEeCCc-hh-HHHHHHHHHcCCCCceEEEEeeCC-C-CCC-C-------cHHHHHHHHcCCCEEEEC
Q 024606 37 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNH-D-RGP-N-------SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 37 ~~~rIav~~Sg~g-~~-l~~ll~~~~~~~l~~~I~~Vit~~-~-~~~-~-------~~v~~~a~~~gIP~~~~~ 98 (265)
.++||+|..||+- |. ...||.. +| ++|.+|.... + +.. . ..+.+.|+..|||++.++
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vd 70 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--QG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVD 70 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--cC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEc
Confidence 4689999999873 43 3445544 24 7999987644 2 121 1 248899999999999886
No 88
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=60.16 E-value=31 Score=29.07 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=35.6
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-----~~~v~~~a~~~gIP~~~~~ 98 (265)
||+|..||+. +.+..++..+... .+.++.+|..+..-.. ...+.++|+++|||+..+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6888889873 3455555443221 1346766665542211 2457899999999988765
No 89
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=60.15 E-value=39 Score=30.41 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=38.4
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
||+|+++|.|+ |+.|...+.. . .+|| +|.++. .+......++..++-+.-. +..+..+.+|
T Consensus 1 m~~~~i~GtGniG~alA~~~a~--a---g~eV--~igs~r--~~~~~~a~a~~l~~~i~~~---------~~~dA~~~aD 62 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK--A---GHEV--IIGSSR--GPKALAAAAAALGPLITGG---------SNEDAAALAD 62 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh--C---CCeE--EEecCC--ChhHHHHHHHhhccccccC---------ChHHHHhcCC
Confidence 68999999988 6655544333 1 3676 455442 2334555666666553321 1223445799
Q ss_pred EEEEE
Q 024606 117 FLVLA 121 (265)
Q Consensus 117 ~vv~a 121 (265)
+||++
T Consensus 63 VVvLA 67 (211)
T COG2085 63 VVVLA 67 (211)
T ss_pred EEEEe
Confidence 99887
No 90
>PRK13530 arsenate reductase; Provisional
Probab=60.01 E-value=13 Score=30.39 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=41.1
Q ss_pred CceEEEEEeCCc--hh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHH-Hhh
Q 024606 38 KYKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE-LVQ 113 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~-~l~ 113 (265)
++||.|+.+|+. |. .++++.....+.+.+.-+++ . ..+.+..+.+.++++||++.. +... .+.+ .+.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~--~-~~~~~~~a~~~l~e~Gi~~~~--~~s~----~l~~~~~~ 73 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI--E-AHGVNPNAIKAMKEVGIDISN--QTSD----IIDNDILN 73 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC--C-CCCCCHHHHHHHHHcCCCcCC--Cccc----cCChhHhc
Confidence 578999888873 33 34566554322211111121 1 123456688999999999742 2111 1111 234
Q ss_pred CCCEEEEEe
Q 024606 114 NTDFLVLAR 122 (265)
Q Consensus 114 ~~D~vv~ag 122 (265)
..|+||...
T Consensus 74 ~~D~ii~m~ 82 (133)
T PRK13530 74 NADLVVTLC 82 (133)
T ss_pred cCCEEEEec
Confidence 789998764
No 91
>PRK04148 hypothetical protein; Provisional
Probab=59.95 E-value=1e+02 Score=25.69 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
+.+||+.+|.|.|..+...|.. .| ++|+++=.++ ...+.|++.++.+...+- .+. +. ++.+++|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G---~~ViaIDi~~------~aV~~a~~~~~~~v~dDl-f~p-~~---~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SG---FDVIVIDINE------KAVEKAKKLGLNAFVDDL-FNP-NL---EIYKNAK 79 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CC---CEEEEEECCH------HHHHHHHHhCCeEEECcC-CCC-CH---HHHhcCC
Confidence 3489999999988655544443 23 6776653333 247788889988775331 111 11 2333788
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhH
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKF 161 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~i 161 (265)
++.... -| +|-+ ..+..+..++...+|...+-.+..
T Consensus 80 liysir----pp--~el~---~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 80 LIYSIR----PP--RDLQ---PFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EEEEeC----CC--HHHH---HHHHHHHHHcCCCEEEEcCCCCCC
Confidence 885543 12 2222 224445555555666555555443
No 92
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=59.53 E-value=47 Score=25.05 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
...++++++|+ +..+.+-.+-+...-..+..+|++++||+..++.+ +|+=..+
T Consensus 17 ~~v~kai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~-----~eLG~a~ 69 (82)
T PRK13602 17 KQTVKALKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM-----KKLGKAC 69 (82)
T ss_pred HHHHHHHHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHH
Confidence 55666777664 44433333322111245788999999999987632 4555544
No 93
>PRK06683 hypothetical protein; Provisional
Probab=58.98 E-value=20 Score=27.25 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECC
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~ 99 (265)
...++++++|+ +..+.|-.+-+......+...|+.++||++.++.
T Consensus 17 ~~v~kaik~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 17 KRTLEAIKNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred HHHHHHHHcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 44566666663 4544333333221124578889999999988763
No 94
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=58.87 E-value=52 Score=30.53 Aligned_cols=66 Identities=21% Similarity=0.167 Sum_probs=36.6
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
...|++|+|.|. |..+...+... .++|. | +++. ..-.+.+++.|..... .+++.+.+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-----Ga~V~-v-~~r~----~~~~~~~~~~G~~~~~--------~~~l~~~l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-----GANVT-V-GARK----SAHLARITEMGLSPFH--------LSELAEEVGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-----CCEEE-E-EECC----HHHHHHHHHcCCeeec--------HHHHHHHhCCC
Confidence 357999999876 33333333331 35553 2 3331 1225667777754321 12455566689
Q ss_pred CEEEEE
Q 024606 116 DFLVLA 121 (265)
Q Consensus 116 D~vv~a 121 (265)
|+|+.+
T Consensus 212 DiVI~t 217 (296)
T PRK08306 212 DIIFNT 217 (296)
T ss_pred CEEEEC
Confidence 999876
No 95
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=58.67 E-value=39 Score=30.64 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=31.9
Q ss_pred ceEEEEEeCCchhHH---HHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 39 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~---~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|||.|.+.|.+..+. .|.+.+... .+++..+ +.+.. ....+.++.|++++.++
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~~~----~~~~~~~~~g~~~~~i~ 56 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTKRG----LEKRLVPKAGIEFYFIP 56 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCCCc----chhcccccCCCceEEEe
Confidence 488888877765443 566766542 3787654 54321 11233455799988776
No 96
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=58.41 E-value=27 Score=33.56 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=58.0
Q ss_pred HhhhHhhhccccccccCCCCCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024606 17 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 95 (265)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~ 95 (265)
++|.|..-+.++-.+.....|-.||+|.|-|. |+-...+..++ | ++|+++=.+.+ -++.|++.|--..
T Consensus 146 ApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~--g---a~Via~~~~~~------K~e~a~~lGAd~~ 214 (339)
T COG1064 146 APLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAM--G---AEVIAITRSEE------KLELAKKLGADHV 214 (339)
T ss_pred hhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHc--C---CeEEEEeCChH------HHHHHHHhCCcEE
Confidence 67778877777766667788899999999883 34344444543 3 78875544432 2788999998877
Q ss_pred EECCCCCchHHHHHHHhh-CCCEEEEE
Q 024606 96 YLCAKENEREEELLELVQ-NTDFLVLA 121 (265)
Q Consensus 96 ~~~~~~~~~~~~l~~~l~-~~D~vv~a 121 (265)
.... +++..+.++ .+|+++..
T Consensus 215 i~~~-----~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 215 INSS-----DSDALEAVKEIADAIIDT 236 (339)
T ss_pred EEcC-----CchhhHHhHhhCcEEEEC
Confidence 5322 233444444 48887654
No 97
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=58.30 E-value=82 Score=28.67 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=51.7
Q ss_pred hhHhhhHhhhccccccccCCCCCCceEEEEEeCCc-hhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCC
Q 024606 15 DFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI 92 (265)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~rIav~~Sg~g-~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gI 92 (265)
+|..+-++|....... .. .....+|.++..|.. .++ ..+++++.+-....++..|+ .+..+....+.+.++.+.
T Consensus 149 ~Y~~lr~eF~~~~~~~-~~-~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~-G~~~~~~~~l~~~~~~~~- 224 (279)
T TIGR03590 149 SYALLREEFYQLATAN-KR-RKPLRRVLVSFGGADPDNLTLKLLSALAESQINISITLVT-GSSNPNLDELKKFAKEYP- 224 (279)
T ss_pred hHHhhhHHHHHhhHhh-hc-ccccCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEE-CCCCcCHHHHHHHHHhCC-
Confidence 5778888885422111 10 112356766665553 343 46666664322235665544 332222234555655543
Q ss_pred CEEEECCCCCchHHHHHHHhhCCCEEEEEec
Q 024606 93 PYHYLCAKENEREEELLELVQNTDFLVLARY 123 (265)
Q Consensus 93 P~~~~~~~~~~~~~~l~~~l~~~D~vv~ag~ 123 (265)
.+.... ..+++.+++..+|++|++|=
T Consensus 225 ~i~~~~-----~~~~m~~lm~~aDl~Is~~G 250 (279)
T TIGR03590 225 NIILFI-----DVENMAELMNEADLAIGAAG 250 (279)
T ss_pred CEEEEe-----CHHHHHHHHHHCCEEEECCc
Confidence 233221 22467788889999998763
No 98
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.57 E-value=30 Score=33.39 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.7
Q ss_pred CCceEEEEEeCC-chhHHHHHHH
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYG 58 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~ 58 (265)
.++||+|+|+|. |+.+..++..
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh
Confidence 348999999998 6777666653
No 99
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.36 E-value=51 Score=30.06 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=33.8
Q ss_pred CCceEEEEEeCC-chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024606 37 PKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 95 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~ 95 (265)
.|.|+++.+||+ |+.| ..+|. .|. +.|....+--. +.+..+.+|.+.|+|+.
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr---~g~-~le~~~mvgid---p~sdglaraarlgv~tt 56 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILR---HGQ-HLEMAVMVGID---PQSDGLARAARLGVATT 56 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHh---cCC-cccceeEEccC---CCccHHHHHHhcCCcch
Confidence 578999999998 4433 33443 343 34554444332 45677899999999974
No 100
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=57.32 E-value=24 Score=29.22 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=43.6
Q ss_pred ceEEEEEeCCc--hh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 39 YKVAVLASKQE--HC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 39 ~rIav~~Sg~g--~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
+||.|+.+|+- |. .++++..... .+.+.-+++......+.+....+.++++||++.. +....-.++ .+.++
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~--h~s~~lt~~---~~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGLVKHPADATAADVAANHGVSLEG--HAGRKLTAE---MARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCC--CccCcCCHH---HHhhC
Confidence 68998888873 33 4566655332 2223333443222223456688999999999642 111100111 23479
Q ss_pred CEEEEEec
Q 024606 116 DFLVLARY 123 (265)
Q Consensus 116 D~vv~ag~ 123 (265)
|+|+...-
T Consensus 77 DlIl~M~~ 84 (144)
T PRK11391 77 DLILAMES 84 (144)
T ss_pred CEEEECCH
Confidence 99998753
No 101
>PLN02928 oxidoreductase family protein
Probab=57.25 E-value=1.6e+02 Score=28.02 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC---
Q 024606 107 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 183 (265)
Q Consensus 107 ~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~--- 183 (265)
++.+++.++|+|+++- |.- --.+++|..+.++..+.+.+=+--| ||.
T Consensus 219 ~L~ell~~aDiVvl~l-----Plt--------------------~~T~~li~~~~l~~Mk~ga~lINva-----RG~lVd 268 (347)
T PLN02928 219 DIYEFAGEADIVVLCC-----TLT--------------------KETAGIVNDEFLSSMKKGALLVNIA-----RGGLLD 268 (347)
T ss_pred CHHHHHhhCCEEEECC-----CCC--------------------hHhhcccCHHHHhcCCCCeEEEECC-----CccccC
Confidence 4566777899998763 211 1234599999999998775555444 774
Q ss_pred -cHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 184 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNL--RTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 184 -~pi~~ai~~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~--~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
..+..|+.+|.- ..|.-|+....--..-+.+....+-+.|.-.. .+-.+++ .+.+.+.+..+.+|+
T Consensus 269 e~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~----~~~~~~nl~~~~~g~ 338 (347)
T PLN02928 269 YDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSM----GKIVGDAALQLHAGR 338 (347)
T ss_pred HHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHH----HHHHHHHHHHHHCCC
Confidence 456777888864 24556655544333346665566666665432 2223333 334556666666664
No 102
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=56.89 E-value=66 Score=28.01 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=41.1
Q ss_pred eEEEEEe-CCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC-CcHHHHHHHHcCCCEEEECCCCCchHH---HHHHHh
Q 024606 40 KVAVLAS-KQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREE---ELLELV 112 (265)
Q Consensus 40 rIav~~S-g~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-~~~v~~~a~~~gIP~~~~~~~~~~~~~---~l~~~l 112 (265)
-|++.|. |.| +.+..|-...... +..|..|-++.-+.. -..+..+|+..|+|++......+ ..+ +.++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-~~~~~~~~l~~~ 79 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-PAEIAREALEKF 79 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-HHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-hHHHHHHHHHHH
Confidence 3444444 334 3455554443322 356654444432211 14478899999999986432211 111 122223
Q ss_pred h--CCCEEEEEecCC
Q 024606 113 Q--NTDFLVLARYMQ 125 (265)
Q Consensus 113 ~--~~D~vv~ag~~~ 125 (265)
+ +.|+|++-.-++
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 2 589998766555
No 103
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.41 E-value=31 Score=33.34 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHH-cCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024606 35 IDPKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 93 (265)
Q Consensus 35 ~~~~~rIav~~Sg~g~~l~~ll~~~~-~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP 93 (265)
.++..|++|++.|.-. +.++.++. .++-++.|+||.+.. -...+++|++||+|
T Consensus 3 ~s~~ir~Gi~g~g~ia--~~f~~al~~~p~s~~~Ivava~~s----~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIA--RDFVRALHTLPESNHQIVAVADPS----LERAKEFAQRHNIP 56 (351)
T ss_pred CCceeEEEEeehhHHH--HHHHHHhccCcccCcEEEEEeccc----HHHHHHHHHhcCCC
Confidence 4567899999877632 23333321 122368999988753 34578999999996
No 104
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=55.14 E-value=17 Score=29.43 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred ceEEEEEeCCc--hh-HHHHHHHHHcC-CCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 39 YKVAVLASKQE--HC-LVDFLYGWQEG-KLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 39 ~rIav~~Sg~g--~~-l~~ll~~~~~~-~l~~~I~~Vit~~-~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
|||.|+.+++- |. .++++.....+ ++.+.-+++.... ..+.+..+.+.++++||++.. +....-++ ..++
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~~~g~~~~~~a~~~l~~~Gid~s~--h~s~~l~~---~~~~ 75 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGWHVGGRPDPRAIAVLAEHGIDISG--HRARQLTE---DDFD 75 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCccCCCCCCHHHHHHHHHcCCCccc--CeeeeCCH---HHHH
Confidence 58888887763 33 45666654432 2212222222210 123456688999999999732 21110011 1344
Q ss_pred CCCEEEEEecCC
Q 024606 114 NTDFLVLARYMQ 125 (265)
Q Consensus 114 ~~D~vv~ag~~~ 125 (265)
++|+||...-.+
T Consensus 76 ~aDlIi~m~~~~ 87 (141)
T cd00115 76 EFDLIITMDESN 87 (141)
T ss_pred hCCEEEEECHHH
Confidence 799999876443
No 105
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=54.78 E-value=1.9e+02 Score=27.25 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=86.3
Q ss_pred CceEEEEEeCC-chhHHHHHH-HHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLY-GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~-~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
.++++++|.|. |..+...+. ++ ..+|. +.++... .+...+.|+.+. ++.++++++
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f-----gm~V~--~~~~~~~-----~~~~~~~~~~~~-----------~l~ell~~s 201 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF-----NMPIL--YNARRHH-----KEAEERFNARYC-----------DLDTLLQES 201 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC-----CCEEE--EECCCCc-----hhhHHhcCcEec-----------CHHHHHHhC
Confidence 37899999987 544444443 32 35553 3333111 122234454211 244566789
Q ss_pred CEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHH
Q 024606 116 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFD 191 (265)
Q Consensus 116 D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~ 191 (265)
|+|++.- | ++-..+++|..+.++..+.+.+=+--| ||. ..+..|+.
T Consensus 202 Dvv~lh~-----p--------------------lt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVde~AL~~AL~ 251 (323)
T PRK15409 202 DFVCIIL-----P--------------------LTDETHHLFGAEQFAKMKSSAIFINAG-----RGPVVDENALIAALQ 251 (323)
T ss_pred CEEEEeC-----C--------------------CChHHhhccCHHHHhcCCCCeEEEECC-----CccccCHHHHHHHHH
Confidence 9998753 2 122345699999999998774433333 774 45677888
Q ss_pred hCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 192 AGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 192 ~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
+|.- ..|.-|+.-..--...+.+....+-+.|.-...+...+ ....+.+.+.+..+.+|+
T Consensus 252 ~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~--~~~~~~~~~ni~~~~~g~ 312 (323)
T PRK15409 252 KGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR--YNMAACAVDNLIDALQGK 312 (323)
T ss_pred cCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH--HHHHHHHHHHHHHHHcCC
Confidence 8853 24455555443322335555555656665432222111 222334455556666665
No 106
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=54.48 E-value=2e+02 Score=27.32 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=84.2
Q ss_pred CcHHHHHHHHcCCCEEEECC-CCCch--------HHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCccc
Q 024606 80 NSHVIRFLERHGIPYHYLCA-KENER--------EEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLT 150 (265)
Q Consensus 80 ~~~v~~~a~~~gIP~~~~~~-~~~~~--------~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s 150 (265)
+..+.++++..|.++..++. ..... .+++.++|.++|++++. +|+-|
T Consensus 154 G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh-----~PlT~------------------- 209 (324)
T COG0111 154 GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLH-----LPLTP------------------- 209 (324)
T ss_pred HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEc-----CCCCc-------------------
Confidence 35688889999999988875 11111 13466677799999874 34222
Q ss_pred ccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCC
Q 024606 151 SYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRD 225 (265)
Q Consensus 151 ~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~d 225 (265)
-.+++|..+.+++.|.|.+=+.-| ||. ..+..|+.+|.- ..+.-|+.-..--+.=|.+.-..+-+.|.-
T Consensus 210 -eT~g~i~~~~~a~MK~gailIN~a-----RG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHi 283 (324)
T COG0111 210 -ETRGLINAEELAKMKPGAILINAA-----RGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHI 283 (324)
T ss_pred -chhcccCHHHHhhCCCCeEEEECC-----CcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcc
Confidence 256699999999998886655544 775 456777788853 244444444333333366666666666654
Q ss_pred CHHHH--HHHHHHHHHHHHHHHHHHHHhCC
Q 024606 226 NLRTF--VQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 226 t~~~L--~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
-..+. .+++ .+.+.+.+..+.+|.
T Consensus 284 a~~T~ea~~~~----~~~~~~~i~~~l~g~ 309 (324)
T COG0111 284 GGSTDEAQERV----AEIVAENIVRYLAGG 309 (324)
T ss_pred cccCHHHHHHH----HHHHHHHHHHHHcCC
Confidence 33333 2333 334444555555554
No 107
>PRK14561 hypothetical protein; Provisional
Probab=54.19 E-value=28 Score=30.26 Aligned_cols=54 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred ceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCCC-CCCCcHHHHHHHHcCCCEEEEC
Q 024606 39 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 39 ~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~~-~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|||+|+.||+- | .+..++... .++.++-.+.. ...-..+...|++.|+|...+.
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 79999999973 3 333333321 23433322221 1112457889999999998775
No 108
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=54.16 E-value=61 Score=31.22 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=37.9
Q ss_pred CCCceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCC-CCC-CC---cHHHHHHHHcCCCEEEECC
Q 024606 36 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNH-DRG-PN---SHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 36 ~~~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~-~~~-~~---~~v~~~a~~~gIP~~~~~~ 99 (265)
.+..||+|..||+- +.+..++.. .| .++.+|..+. +.. .. ..+.++|+++|||++.++-
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~--~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLE--AG---YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHH--cC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 34579999999873 344455543 23 6788776643 111 11 2367899999999988763
No 109
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=53.70 E-value=1.4e+02 Score=27.59 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=53.7
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
..|++|+|.|. |..+...+.+. | .+|. +.++. ... .+.+.+.|..... .+++.+.+.++|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~--G---~~V~--v~~R~---~~~-~~~~~~~g~~~~~--------~~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL--G---ARVF--VGARS---SAD-LARITEMGLIPFP--------LNKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC--C---CEEE--EEeCC---HHH-HHHHHHCCCeeec--------HHHHHHHhccCC
Confidence 36899998876 33333333321 2 4553 34442 111 3334455543221 134555666899
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHhCC
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 194 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~ 194 (265)
+|+.+- |.. +++.+.++..+.+.+-+--+--| |..+..+|-..|.
T Consensus 212 iVint~-----P~~-------------------------ii~~~~l~~~k~~aliIDlas~P---g~tdf~~Ak~~G~ 256 (287)
T TIGR02853 212 IVINTI-----PAL-------------------------VLTADVLSKLPKHAVIIDLASKP---GGTDFEYAKKRGI 256 (287)
T ss_pred EEEECC-----ChH-------------------------HhCHHHHhcCCCCeEEEEeCcCC---CCCCHHHHHHCCC
Confidence 998763 211 56677777666554444444433 4444555544443
No 110
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=53.37 E-value=80 Score=29.63 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=67.7
Q ss_pred HHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC---
Q 024606 107 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 183 (265)
Q Consensus 107 ~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~--- 183 (265)
++.++++++|+|+++- |.-++ .++++..+.++..+.+.+=+--| ||.
T Consensus 183 ~l~e~l~~aDvvv~~l-----Plt~~--------------------T~~li~~~~l~~mk~ga~lIN~a-----RG~vVd 232 (312)
T PRK15469 183 ELSAFLSQTRVLINLL-----PNTPE--------------------TVGIINQQLLEQLPDGAYLLNLA-----RGVHVV 232 (312)
T ss_pred cHHHHHhcCCEEEECC-----CCCHH--------------------HHHHhHHHHHhcCCCCcEEEECC-----CccccC
Confidence 4666777999998753 31111 23377888898888764433333 774
Q ss_pred -cHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 184 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 184 -~pi~~ai~~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
..+..|+.+|.- ..|.-|+.-..--+..+++....+-+.|.-...+-..+ ..+.+.+.++.+.+|+
T Consensus 233 e~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~~----~~~~~~~n~~~~~~g~ 300 (312)
T PRK15469 233 EDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPAE----AVEYISRTIAQLEKGE 300 (312)
T ss_pred HHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHHH----HHHHHHHHHHHHHcCC
Confidence 456777888853 24555665554444456666556666665433222222 3556678888888876
No 111
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=52.93 E-value=1.1e+02 Score=29.81 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=55.5
Q ss_pred cCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCc-----HHHHHHHHcCCCEEEECCCCCc---
Q 024606 32 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLCAKENE--- 103 (265)
Q Consensus 32 ~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~-----~v~~~a~~~gIP~~~~~~~~~~--- 103 (265)
.|.+.-+.||||..|.+|..+++++..+..-...++|...-+ .--+.++ ..++.+.+.+.-+..+.+-+++
T Consensus 129 ~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~-~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eD 207 (438)
T PRK00286 129 KPLPFFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPT-LVQGEGAAASIVAAIERANARGEDVLIVARGGGSLED 207 (438)
T ss_pred CCCCCCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecC-cCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHH
Confidence 444666899999999999999999987765443355543222 2111122 1233444444455655543332
Q ss_pred ----hHHHHHHHhhCCCEEEEEecCC
Q 024606 104 ----REEELLELVQNTDFLVLARYMQ 125 (265)
Q Consensus 104 ----~~~~l~~~l~~~D~vv~ag~~~ 125 (265)
+++++.+.+.++.+=|+.|-+|
T Consensus 208 L~~Fn~e~v~~ai~~~~~Pvis~IGH 233 (438)
T PRK00286 208 LWAFNDEAVARAIAASRIPVISAVGH 233 (438)
T ss_pred hhccCcHHHHHHHHcCCCCEEEeccC
Confidence 3567888887655556677777
No 112
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=52.71 E-value=48 Score=29.54 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=53.2
Q ss_pred CceEEEEEeCC-chhHH-HHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~-~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
+|||+|+|.|. |+.+. .+.+. |....++ .++. ++ .....++++.+|+.+. .. .+ +.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~---g~~~~~v-~v~~-r~---~~~~~~~~~~~g~~~~--~~-----~~---~~~~~a 63 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS---GVPAKDI-IVSD-PS---PEKRAALAEEYGVRAA--TD-----NQ---EAAQEA 63 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC---CCCcceE-EEEc-CC---HHHHHHHHHhcCCeec--CC-----hH---HHHhcC
Confidence 58999999876 44332 33322 3111233 3443 31 2234455555676432 11 11 234578
Q ss_pred CEEEEEecCCCCcchhhhhhhhhhhhhhcc---cCcccccccccCChhHHhhc-C--CCeEEecCCC
Q 024606 116 DFLVLARYMQPVPLQKEAYLGYKLLESLSS---KGSLTSYFNMILSGKFLRSY-G--KDVINIHHGL 176 (265)
Q Consensus 116 D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~---~~~~s~y~~~il~~~il~~~-~--~~~iNiHpsl 176 (265)
|+|+++- |+ .+ -.+.++.+.+ +..+|+-.. ++.+.++.. + ..++..||..
T Consensus 64 dvVil~v-----~~--~~--~~~v~~~l~~~~~~~vvs~~~g--i~~~~l~~~~~~~~~iv~~~P~~ 119 (267)
T PRK11880 64 DVVVLAV-----KP--QV--MEEVLSELKGQLDKLVVSIAAG--VTLARLERLLGADLPVVRAMPNT 119 (267)
T ss_pred CEEEEEc-----CH--HH--HHHHHHHHHhhcCCEEEEecCC--CCHHHHHHhcCCCCcEEEecCCc
Confidence 9998875 11 11 1223333333 344444332 355556543 2 3689999965
No 113
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=52.48 E-value=1.2e+02 Score=29.23 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=56.9
Q ss_pred cCCCCCCceEEEEEeCCchhHHHHHH-HHHcCCCCceEEEEeeCCCCC---C-------CcHHHHHHHHcCCCEEEECCC
Q 024606 32 VPDIDPKYKVAVLASKQEHCLVDFLY-GWQEGKLPVEITCVISNHDRG---P-------NSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 32 ~~~~~~~~rIav~~Sg~g~~l~~ll~-~~~~~~l~~~I~~Vit~~~~~---~-------~~~v~~~a~~~gIP~~~~~~~ 100 (265)
-|..+.++||.|+|+.+|-.|.+=+. +. | ..++-.+|.-.++.. + +....++|++.|.=...+...
T Consensus 35 gp~~ngPKkVLviGaSsGyGLa~RIsaaF--G-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingD 111 (398)
T COG3007 35 GPIKNGPKKVLVIGASSGYGLAARISAAF--G-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGD 111 (398)
T ss_pred CCccCCCceEEEEecCCcccHHHHHHHHh--C-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccc
Confidence 55667889999999999877765444 34 3 246777887755321 1 245789999999744333211
Q ss_pred CCch--HHHHHHHhh----CCCEEE--EEecCCCCc
Q 024606 101 ENER--EEELLELVQ----NTDFLV--LARYMQPVP 128 (265)
Q Consensus 101 ~~~~--~~~l~~~l~----~~D~vv--~ag~~~~ip 128 (265)
--+. -+..++.++ +.|++| +|+=+|+-|
T Consensus 112 aFS~e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~p 147 (398)
T COG3007 112 AFSDEMKQKVIEAIKQDFGKVDLVVYSLASPRRKHP 147 (398)
T ss_pred hhhHHHHHHHHHHHHHhhccccEEEEeccCccccCC
Confidence 1111 234555555 689998 344444333
No 114
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=52.39 E-value=39 Score=27.23 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEecC
Q 024606 52 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM 124 (265)
Q Consensus 52 l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag~~ 124 (265)
.++++.....+++.+.-+++......+.+....+.++++||++..... ...+ +.+.+.|+||...-.
T Consensus 15 AEa~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~--~l~~----~~~~~~DlIv~m~~~ 81 (140)
T smart00226 15 AEALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHAS--QLTS----SDFKNADLVLAMDHS 81 (140)
T ss_pred HHHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceec--cCCH----HHHHhCCEEEEeCHH
Confidence 356665543332222333443223334566789999999999642111 1111 233489999987643
No 115
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=52.29 E-value=50 Score=28.62 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=32.6
Q ss_pred CceEEEEEeCC-chh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
.++|+|+|.|+ |+. ..+|-+ +| .+| +|..+ +++.-.+.|++.|..+.. +.+.++.+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrD---SG---~~V--~Vglr---~~s~s~~~A~~~Gf~v~~-----------~~eAv~~a 61 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRD---SG---VNV--IVGLR---EGSASWEKAKADGFEVMS-----------VAEAVKKA 61 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHH---CC----EE--EEEE----TTCHHHHHHHHTT-ECCE-----------HHHHHHC-
T ss_pred CCEEEEECCChHHHHHHHHHHh---CC---CCE--EEEec---CCCcCHHHHHHCCCeecc-----------HHHHHhhC
Confidence 47899999986 331 112211 23 444 55555 344457889999987643 22345578
Q ss_pred CEEEE
Q 024606 116 DFLVL 120 (265)
Q Consensus 116 D~vv~ 120 (265)
|+|++
T Consensus 62 DvV~~ 66 (165)
T PF07991_consen 62 DVVML 66 (165)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88765
No 116
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=52.11 E-value=46 Score=36.66 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=42.1
Q ss_pred CCCceEEEEEeCC-chhHHHHHHHHHcCCCC---------ceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEECCCCCch
Q 024606 36 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLP---------VEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENER 104 (265)
Q Consensus 36 ~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~---------~~I~~Vit~~~~~~~~~v~~~a~~~-gIP~~~~~~~~~~~ 104 (265)
.+++||+|+|+|. |......|.. .+... ..+..+|++.+ .....++++++ |+....++- .+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~--~~~~~~~~~~~~~~~~~lV~VaD~~---~~~a~~la~~~~~~~~v~lDv---~D 638 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLAS--VKTISYYGDDSEEPTDVHVIVASLY---LKDAKETVEGIENAEAVQLDV---SD 638 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHh--CcCccccccccccccccEEEEECCC---HHHHHHHHHhcCCCceEEeec---CC
Confidence 4578999999987 4433333322 12110 11223444442 22345566665 655554431 13
Q ss_pred HHHHHHHhhCCCEEEEEe
Q 024606 105 EEELLELVQNTDFLVLAR 122 (265)
Q Consensus 105 ~~~l~~~l~~~D~vv~ag 122 (265)
.+++.+.++++|+||++-
T Consensus 639 ~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 639 SESLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHHHhhcCCCEEEECC
Confidence 356777777899988764
No 117
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=51.93 E-value=88 Score=24.48 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=34.8
Q ss_pred ceEEEEEeCCchh--HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCC
Q 024606 39 YKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 39 ~rIav~~Sg~g~~--l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~ 100 (265)
.=++|+.|.+|.. ....++..++. ++.++ ++|+. .++.++|.++|+++..++..
T Consensus 44 ~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI-~IT~~-----~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 44 KTLVIAVSYSGNTEETLSAVEQAKER--GAKIV-AITSG-----GKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC--CCEEE-EEeCC-----chHHHHHHHcCCcEEECCCC
Confidence 4488889988753 33444444332 35665 45532 24788999999999988754
No 118
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=51.78 E-value=56 Score=31.50 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=39.7
Q ss_pred CCCCceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCC-C---CCC-C-------cHHHHHHHHcCCCEEEEC
Q 024606 35 IDPKYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNH-D---RGP-N-------SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 35 ~~~~~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~-~---~~~-~-------~~v~~~a~~~gIP~~~~~ 98 (265)
+.++.||+|..||+- | ....||.+ +| +.+.+|+... + +.. . ..+...|+..|||+..+.
T Consensus 2 p~~~~~VvvamSgGVDSsVaa~Ll~~--~g---~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 2 PEKPDRVVVAMSGGVDSSVAARLLAA--RG---YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred CcccceEEEEecCCchHHHHHHHHHh--cC---CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 345689999999863 3 34455554 23 6888998744 1 111 1 347899999999998875
No 119
>PRK07714 hypothetical protein; Provisional
Probab=51.32 E-value=72 Score=24.74 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...++++++|+ +.+ |+...|-.+ -..+..+|+.++||++.+.. .+|+-..+-
T Consensus 24 ~~v~~al~~g~--~~l--ViiA~D~s~~~~~ki~~~~~~~~vp~~~~~s-----k~eLG~a~G 77 (100)
T PRK07714 24 ELVLKEVRSGK--AKL--VLLSEDASVNTTKKITDKCTYYNVPMRKVEN-----RQQLGHAIG 77 (100)
T ss_pred HHHHHHHHhCC--ceE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEeCC-----HHHHHHHhC
Confidence 45666666664 344 333333222 25578889999999987643 245555553
No 120
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=51.23 E-value=43 Score=27.26 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred ceEEEEEeCC--chhH----HHHHHHHHcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 39 YKVAVLASKQ--EHCL----VDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 39 ~rIav~~Sg~--g~~l----~~ll~~~~~~~l-~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
||..++|-|. |... .++.+++....+ +..|.++.|-..+..+..+.+.|+++|+|+..++
T Consensus 1 ~~~~~vGIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 1 MMRVALGIGCRRGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhCCCeEEeC
Confidence 3445555543 3322 233333444434 3567777765544445779999999999999875
No 121
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=50.67 E-value=2.1e+02 Score=26.64 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCEEEECCCCCc-----hHHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCccccccccc
Q 024606 82 HVIRFLERHGIPYHYLCAKENE-----REEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMI 156 (265)
Q Consensus 82 ~v~~~a~~~gIP~~~~~~~~~~-----~~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~i 156 (265)
.+.++|+..|..+..++..... ...++.++++++|+|++.- | ++-..+++
T Consensus 159 ~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~-----P--------------------lt~~T~~l 213 (311)
T PRK08410 159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHA-----P--------------------LNEKTKNL 213 (311)
T ss_pred HHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeC-----C--------------------CCchhhcc
Confidence 3455555666665555421100 0124566777899998763 3 12235569
Q ss_pred CChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHhCCCEeEEEEEEecCccCCCCee
Q 024606 157 LSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKLIGATSHFVTEELDAGPII 214 (265)
Q Consensus 157 l~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~~GvTvH~v~~~~D~G~II 214 (265)
|..+.++..+.+.+=+--| ||. ..+..|+.+|.-..|.-|+.-..-...-|.+
T Consensus 214 i~~~~~~~Mk~~a~lIN~a-----RG~vVDe~AL~~AL~~g~i~AaLDV~~~EP~~~~~pL~ 270 (311)
T PRK08410 214 IAYKELKLLKDGAILINVG-----RGGIVNEKDLAKALDEKDIYAGLDVLEKEPMEKNHPLL 270 (311)
T ss_pred cCHHHHHhCCCCeEEEECC-----CccccCHHHHHHHHHcCCeEEEEecCCCCCCCCCChhh
Confidence 9999999998774433322 774 4677888888544677777665543333444
No 122
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=50.25 E-value=33 Score=26.13 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
...++++++|+ +..+.+-.+-+...-..+...|+.++||+.+..
T Consensus 14 ~~vlkaIk~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 14 KQTLKAITNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred HHHHHHHHcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 44566666663 444433333221112568889999999997654
No 123
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=50.10 E-value=1.2e+02 Score=29.72 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=56.6
Q ss_pred cCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCc-----HHHHHHHHcC-CCEEEECCCCCc--
Q 024606 32 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHG-IPYHYLCAKENE-- 103 (265)
Q Consensus 32 ~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~-----~v~~~a~~~g-IP~~~~~~~~~~-- 103 (265)
.|.+.-+.||+|..|.+|..+++++..+......++|...-+ .--+.++ ..++.+.+.+ +-+..+.+-+++
T Consensus 123 ~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~-~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~e 201 (432)
T TIGR00237 123 KPLPHFPKRVGVITSQTGAALADILHILKRRDPSLKVVIYPT-LVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLE 201 (432)
T ss_pred CCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecc-cccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHH
Confidence 455667899999999999999999988765443356643222 2111221 1233343333 566666543322
Q ss_pred -----hHHHHHHHhhCCCEEEEEecCC
Q 024606 104 -----REEELLELVQNTDFLVLARYMQ 125 (265)
Q Consensus 104 -----~~~~l~~~l~~~D~vv~ag~~~ 125 (265)
+++++.+.+.++.+=|+.|-+|
T Consensus 202 DL~~Fn~e~~~rai~~~~~Pvis~iGH 228 (432)
T TIGR00237 202 DLWSFNDEKVARAIFLSKIPIISAVGH 228 (432)
T ss_pred HhhhcCcHHHHHHHHcCCCCEEEecCc
Confidence 2567788887666666677777
No 124
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.94 E-value=30 Score=32.94 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=32.8
Q ss_pred ceEEEEEeCCchh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEE
Q 024606 39 YKVAVLASKQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 96 (265)
Q Consensus 39 ~rIav~~Sg~g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~ 96 (265)
+||+|+|+..|-. |.++ ...-...+.+++...-.+ .-.++|+++|||.+.
T Consensus 5 ksVvV~GtrFGq~Ylaaf----~~~~~~~eLaGiLaqGSe----RSRaLAh~~GVply~ 55 (361)
T COG4693 5 KSVVVCGTRFGQFYLAAF----AAAPPRFELAGILAQGSE----RSRALAHRLGVPLYC 55 (361)
T ss_pred ceEEEecchHHHHHHHHh----ccCCCCceeehhhhcccH----HHHHHHHHhCCcccc
Confidence 3999999877642 3333 222224788888875422 237889999999874
No 125
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=49.94 E-value=49 Score=32.53 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=26.6
Q ss_pred ceEEEEEeCCch------hHHHHHHHHHcCCCCceEEEEeeCCCC
Q 024606 39 YKVAVLASKQEH------CLVDFLYGWQEGKLPVEITCVISNHDR 77 (265)
Q Consensus 39 ~rIav~~Sg~g~------~l~~ll~~~~~~~l~~~I~~Vit~~~~ 77 (265)
|||++.|+.+.. -|..+++.+++-....+|+ |+|+.+.
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~-v~S~~P~ 44 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVD-VMSRYPV 44 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEE-EEecCcc
Confidence 689998885432 3777888877666567886 7776643
No 126
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=49.64 E-value=92 Score=28.48 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=87.3
Q ss_pred EEEEeCCchhH-HHHHHHHH-cCCCCceEEEEeeCCCCCCCcHHHHHHH--HcCCCEEEECCCCCchHHHHHHHhh----
Q 024606 42 AVLASKQEHCL-VDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLE--RHGIPYHYLCAKENEREEELLELVQ---- 113 (265)
Q Consensus 42 av~~Sg~g~~l-~~ll~~~~-~~~l~~~I~~Vit~~~~~~~~~v~~~a~--~~gIP~~~~~~~~~~~~~~l~~~l~---- 113 (265)
.|+++|++|.. .+|-+.+. .| .+| +||.+. ... ++-++ .-+|-..+++-.+...-+++++++.
T Consensus 7 TiLITGG~sGIGl~lak~f~elg---N~V--Ii~gR~---e~~-L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P 77 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELG---NTV--IICGRN---EER-LAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP 77 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhC---CEE--EEecCc---HHH-HHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC
Confidence 35667765532 23333322 13 233 677762 222 22222 2234455555322222357888886
Q ss_pred CCCEEE-EEecCCCCcchhhhhhh-hhhhhhh----cccCcccccccccCChhHHhhcCCCeEEecCCC--C-----CCC
Q 024606 114 NTDFLV-LARYMQPVPLQKEAYLG-YKLLESL----SSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL--L-----PSF 180 (265)
Q Consensus 114 ~~D~vv-~ag~~~~ip~~~~~~~~-~~~~~~~----~~~~~~s~y~~~il~~~il~~~~~~~iNiHpsl--L-----P~y 180 (265)
+.++++ .||-|+-+- +-+ -.+++.+ .-+...-||-+..+=+.+++.+..-+||+-.|| . |-|
T Consensus 78 ~lNvliNNAGIqr~~d-----lt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~PvY 152 (245)
T COG3967 78 NLNVLINNAGIQRNED-----LTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVY 152 (245)
T ss_pred chheeeecccccchhh-----ccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccccccc
Confidence 345555 577776211 110 1122221 124455577788888888888888899998875 3 334
Q ss_pred CC----CcHHHHHHHhCCCEeEEEEEEec-CccCCC
Q 024606 181 KG----GKPAKQAFDAGVKLIGATSHFVT-EELDAG 211 (265)
Q Consensus 181 RG----~~pi~~ai~~G~~~~GvTvH~v~-~~~D~G 211 (265)
-+ .+.+--|++...+.+++-|..+. .-+|++
T Consensus 153 caTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 153 CATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred hhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 33 33444577888899999999987 478887
No 127
>PRK06487 glycerate dehydrogenase; Provisional
Probab=49.55 E-value=2.2e+02 Score=26.69 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=78.1
Q ss_pred cHHHHHHHHcCCCEEEECCCCC---chHHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccC
Q 024606 81 SHVIRFLERHGIPYHYLCAKEN---EREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMIL 157 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~~~~---~~~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il 157 (265)
..+.++++.+|..+..++.... ....++.++++++|+|++.- |.- =-.+++|
T Consensus 161 ~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~l-----Plt--------------------~~T~~li 215 (317)
T PRK06487 161 GAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHC-----PLT--------------------EHTRHLI 215 (317)
T ss_pred HHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECC-----CCC--------------------hHHhcCc
Confidence 3456666667777665543211 01124566677899998753 321 1245699
Q ss_pred ChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHhCCCE-eEEEEEEecCccCCCCeeE--EEEEecCCCCCH--H
Q 024606 158 SGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVKL-IGATSHFVTEELDAGPIIE--QMVERVSHRDNL--R 228 (265)
Q Consensus 158 ~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~~-~GvTvH~v~~~~D~G~II~--Q~~~~I~~~dt~--~ 228 (265)
..+.++..+.+.+=+--| ||. ..+..|+.+|.-. .|.-|+.-..-.+..+.+. ...+-+.|.-.. .
T Consensus 216 ~~~~~~~mk~ga~lIN~a-----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~ 290 (317)
T PRK06487 216 GARELALMKPGALLINTA-----RGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSR 290 (317)
T ss_pred CHHHHhcCCCCeEEEECC-----CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCH
Confidence 999999998875544444 774 5677788888532 4555555544333345553 234555554322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 229 TFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 229 ~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
+-.++ ..+.+.+.+..+.+|+
T Consensus 291 e~~~~----~~~~~~~ni~~~~~g~ 311 (317)
T PRK06487 291 EARQR----IVGQLAENARAFFAGK 311 (317)
T ss_pred HHHHH----HHHHHHHHHHHHHcCC
Confidence 22223 2344556666666664
No 128
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=49.52 E-value=74 Score=31.12 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=38.4
Q ss_pred ceEEEEEeCCc-hhHHHHHHHHH------cCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHH
Q 024606 39 YKVAVLASKQE-HCLVDFLYGWQ------EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 39 ~rIav~~Sg~g-~~l~~ll~~~~------~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
|+|+| ++.- ..-..|++++. +.++.-+-..||||.... ...=.-.|+++|||+. .+++++++
T Consensus 298 m~v~~--~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~-~~gk~~~a~~~gipl~--------~d~~fl~~ 366 (377)
T PRK05601 298 MEVVV--APEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRD-LDGKAMHAQRKGIPLL--------SDVAFLAA 366 (377)
T ss_pred cEEEE--eCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCC-ccchhhhhhhcCCCcc--------CHHHHHHH
Confidence 88888 4432 12233443322 224455667899987533 2333567899999986 25677777
Q ss_pred hh
Q 024606 112 VQ 113 (265)
Q Consensus 112 l~ 113 (265)
+.
T Consensus 367 ~~ 368 (377)
T PRK05601 367 VE 368 (377)
T ss_pred HH
Confidence 65
No 129
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.17 E-value=87 Score=27.87 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=44.9
Q ss_pred EEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-CCCEEEE
Q 024606 42 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVL 120 (265)
Q Consensus 42 av~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-~~D~vv~ 120 (265)
+++|.|.-.+.+.+-++...| ++ .+||.. .+..+.++|+++|||+.. -. ....|+.+.++ .+|++-+
T Consensus 68 ~~vGaGTV~~~~~~~~a~~aG---A~--FivsP~---~~~~v~~~~~~~~i~~iP--G~--~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 68 VLIGAGTVLDAVTARLAILAG---AQ--FIVSPS---FNRETAKICNLYQIPYLP--GC--MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred eEEeeeeCCCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEEC--Cc--CCHHHHHHHHHcCCCEEEE
Confidence 346666655666666666555 34 366654 466799999999999874 22 23356777776 8999875
No 130
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=48.95 E-value=85 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=35.3
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcC-CCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEG-KLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~-~l~~~I~~Vit~~~~~~-----~~~v~~~a~~~gIP~~~~~ 98 (265)
||+|..||+. +.+..++..+... ..+.++.++..++.... ...+.++|+++||++..+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6889999873 3344444443221 11356777766543211 1347888999999988765
No 131
>PRK10206 putative oxidoreductase; Provisional
Probab=48.85 E-value=33 Score=32.34 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=36.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcC-CCEEEECCCCCchHHHHHHHhh--C
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--N 114 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~~~~l~~~l~--~ 114 (265)
++||+++|.|.... +..+.++....-..++++|+....+ ..+++++++ ++++ . + +.++|. +
T Consensus 1 ~irvgiiG~G~~~~-~~h~~~~~~~~~~~~l~av~d~~~~-----~~~~~~~~~~~~~~--~-----~---~~ell~~~~ 64 (344)
T PRK10206 1 VINCAFIGFGKSTT-RYHLPYVLNRKDSWHVAHIFRRHAK-----PEEQAPIYSHIHFT--S-----D---LDEVLNDPD 64 (344)
T ss_pred CeEEEEECCCHHHh-heehhhHhcCCCCEEEEEEEcCChh-----HHHHHHhcCCCccc--C-----C---HHHHhcCCC
Confidence 47999999986221 1112222111114788888764321 236677776 3332 1 1 223443 6
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|+|+++.
T Consensus 65 iD~V~I~t 72 (344)
T PRK10206 65 VKLVVVCT 72 (344)
T ss_pred CCEEEEeC
Confidence 78888765
No 132
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=48.61 E-value=41 Score=32.21 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=38.4
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCC---CCch-HHHHHHHh
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK---ENER-EEELLELV 112 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~---~~~~-~~~l~~~l 112 (265)
++||+|+|+|. |+.|..++.. +| ++|. +....+ .-+.+.-+.+ -...+++.. .+.+ ..++.+.+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--ng---~~V~-lw~r~~----~~~~~i~~~~-~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--NG---HEVR-LWGRDE----EIVAEINETR-ENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--cC---CeeE-EEecCH----HHHHHHHhcC-cCccccCCccCCcccccccCHHHHH
Confidence 48999999999 7777766654 22 4443 444331 1122222222 111122211 1111 23466666
Q ss_pred hCCCEEEEEe
Q 024606 113 QNTDFLVLAR 122 (265)
Q Consensus 113 ~~~D~vv~ag 122 (265)
+++|++|++=
T Consensus 70 ~~ad~iv~av 79 (329)
T COG0240 70 DGADIIVIAV 79 (329)
T ss_pred hcCCEEEEEC
Confidence 6799998773
No 133
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=47.96 E-value=12 Score=31.17 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=36.1
Q ss_pred eEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCE----EEECCCCCchHHHHHHHhhC
Q 024606 40 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY----HYLCAKENEREEELLELVQN 114 (265)
Q Consensus 40 rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~----~~~~~~~~~~~~~l~~~l~~ 114 (265)
||+|+|+|. |+.+...+.. +| ++|. +.+.++ ..+..+-+++..+. ..++..... ..++.+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~-l~~~~~----~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVT-LWGRDE----EQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEE-EETSCH----HHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEE-EEeccH----HHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCc
Confidence 799999998 5556665544 23 5554 454331 23334444443222 111111000 1234556778
Q ss_pred CCEEEEEecC
Q 024606 115 TDFLVLARYM 124 (265)
Q Consensus 115 ~D~vv~ag~~ 124 (265)
+|+++++--.
T Consensus 70 ad~IiiavPs 79 (157)
T PF01210_consen 70 ADIIIIAVPS 79 (157)
T ss_dssp -SEEEE-S-G
T ss_pred ccEEEecccH
Confidence 9999987543
No 134
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=47.15 E-value=1.1e+02 Score=26.05 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=24.2
Q ss_pred EEEEeCCchh--HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH
Q 024606 42 AVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 88 (265)
Q Consensus 42 av~~Sg~g~~--l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~ 88 (265)
.++.|++||. |..|++.+... .......++|..|+.+...+.++-+
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~-~~~~~~~ivt~~d~~S~~k~~~~~~ 49 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDND-RYQPRTYIVTEGDKQSRSKAEQLEK 49 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhh-cCCCcEEEEEcCCcccHHHHHHHHH
Confidence 4455555664 45666766222 1234556888876544333443433
No 135
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=47.08 E-value=26 Score=28.10 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=31.1
Q ss_pred cHHHHHHHHcCCCEEEECC-CC----C-c---------hHHHHHHHhhCCCEEEEEecC
Q 024606 81 SHVIRFLERHGIPYHYLCA-KE----N-E---------REEELLELVQNTDFLVLARYM 124 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~-~~----~-~---------~~~~l~~~l~~~D~vv~ag~~ 124 (265)
..+.++|++.|+|+..... +. + . ..+...+.++++|++++.|..
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 5588999999999986652 11 0 0 135566677799999999954
No 136
>PRK13243 glyoxylate reductase; Reviewed
Probab=47.03 E-value=2.5e+02 Score=26.43 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=85.2
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
.++|+|+|.|. |..+...+.++ ..+|. +.++... . ..+...|... . ++.++++++|
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-----G~~V~--~~d~~~~---~--~~~~~~~~~~---~--------~l~ell~~aD 206 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-----GMRIL--YYSRTRK---P--EAEKELGAEY---R--------PLEELLRESD 206 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCEEE--EECCCCC---h--hhHHHcCCEe---c--------CHHHHHhhCC
Confidence 47899999988 66655555543 34553 3343211 1 1234445421 1 2445666899
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCC--eEEecCCCCCCCCCC----cHHHHHH
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKD--VINIHHGLLPSFKGG----KPAKQAF 190 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~--~iNiHpslLP~yRG~----~pi~~ai 190 (265)
+|+++- |..+ -..+++..+.++..+.+ +||+ -||. ..+..|+
T Consensus 207 iV~l~l-----P~t~--------------------~T~~~i~~~~~~~mk~ga~lIN~-------aRg~~vd~~aL~~aL 254 (333)
T PRK13243 207 FVSLHV-----PLTK--------------------ETYHMINEERLKLMKPTAILVNT-------ARGKVVDTKALVKAL 254 (333)
T ss_pred EEEEeC-----CCCh--------------------HHhhccCHHHHhcCCCCeEEEEC-------cCchhcCHHHHHHHH
Confidence 999874 2111 12348888999988766 4454 3664 4566777
Q ss_pred HhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 191 DAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 191 ~~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
.+|.- ..|.-|+.-..-. .-+++....+-+.|.-...+... .....+.+.+.+..+.+|+
T Consensus 255 ~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~--~~~~~~~~~~ni~~~~~g~ 315 (333)
T PRK13243 255 KEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEA--REGMAELVAENLIAFKRGE 315 (333)
T ss_pred HcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 77742 2334444444322 33555555666666543332221 1222345556666666775
No 137
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=46.99 E-value=70 Score=25.82 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=31.9
Q ss_pred EEeCCchhHHH----HHHHHHcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 44 LASKQEHCLVD----FLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 44 ~~Sg~g~~l~~----ll~~~~~~~l-~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
+|...+...+. +.+++....+ ..+|.++.|-..+..+..+.++|+++|+|+..++
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 34444543333 3334444444 3578777776545445679999999999999875
No 138
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.38 E-value=90 Score=29.49 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=32.5
Q ss_pred CceEEEEEeCCc-hh--HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQE-HC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g-~~--l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|+||.+.+.|.| |- ..++.+.+++. .++|..|-++..- + .+...++|+++..++
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~--e---~~l~~~~g~~~~~~~ 57 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI--E---KTIIEKENIPYYSIS 57 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc--c---cccCcccCCcEEEEe
Confidence 356666666664 43 45666666643 4788766654421 1 344566789987775
No 139
>PLN02688 pyrroline-5-carboxylate reductase
Probab=46.08 E-value=76 Score=28.24 Aligned_cols=65 Identities=15% Similarity=0.356 Sum_probs=33.9
Q ss_pred ceEEEEEeCC-chh-HHHHHHHHHcCCC-CceEEEEee-CCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 39 YKVAVLASKQ-EHC-LVDFLYGWQEGKL-PVEITCVIS-NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 39 ~rIav~~Sg~-g~~-l~~ll~~~~~~~l-~~~I~~Vit-~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
|||+|+|.|. |+. ...|+++ |.+ +.+| +++ ++. ... .+.+.++|+.+. .. ..+.+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~---g~~~~~~i--~v~~~r~---~~~-~~~~~~~g~~~~--~~--------~~e~~~~ 61 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS---GVVPPSRI--STADDSN---PAR-RDVFQSLGVKTA--AS--------NTEVVKS 61 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC---CCCCcceE--EEEeCCC---HHH-HHHHHHcCCEEe--CC--------hHHHHhc
Confidence 6899999876 433 3344433 321 1244 344 542 122 344556787532 11 1123447
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|+|+++-
T Consensus 62 aDvVil~v 69 (266)
T PLN02688 62 SDVIILAV 69 (266)
T ss_pred CCEEEEEE
Confidence 89998875
No 140
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=46.04 E-value=41 Score=26.28 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...++++++|+ +.. ||...|-+. ...+..+|++++||++.+.. ..+|+=..+-
T Consensus 22 ~~v~kai~~gk--akl--ViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~----tk~eLG~a~G 76 (99)
T PRK01018 22 KRTIKAIKLGK--AKL--VIVASNCPKDIKEDIEYYAKLSGIPVYEYEG----SSVELGTLCG 76 (99)
T ss_pred HHHHHHHHcCC--ceE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEECC----CHHHHHHHhC
Confidence 44566666663 444 333333222 25688999999999876531 1245555553
No 141
>PRK13820 argininosuccinate synthase; Provisional
Probab=45.85 E-value=71 Score=31.31 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=37.6
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCc-eEEEEeeCCCCCC-C-cHHHHHHHHcCCCEEEECC
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRGP-N-SHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~-~I~~Vit~~~~~~-~-~~v~~~a~~~gIP~~~~~~ 99 (265)
+.||++..||+- +.+..++.. .++. ++.+|..+..... + ..+.++|++.|||++.++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~ 64 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDA 64 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 468999999873 344444432 1234 7777766653211 1 3478999999999988764
No 142
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=45.82 E-value=1.1e+02 Score=28.55 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=60.2
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHH----HHcCCCEEEECCCCCchHHHHHHH
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL----ERHGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a----~~~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
..+++++|+|.- +.++++.... +.+=+.|+. +. .....++| ++.|+++..+++ ..+.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~-----~i~~v~v~~-r~---~~~a~~f~~~~~~~~~~~v~~~~~--------~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVY-----NPKRIRVYS-RN---FDHARAFAERFSKEFGVDIRPVDN--------AEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEC-CC---HHHHHHHHHHHHHhcCCcEEEeCC--------HHHH
Confidence 488999999862 3445544421 233333443 32 12223333 335888776532 2345
Q ss_pred hhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcH
Q 024606 112 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 185 (265)
Q Consensus 112 l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~p 185 (265)
+.++|+|+.+--.. =| ++..+.++ ++--||.=.+..|.-|-..+
T Consensus 180 v~~aDIV~taT~s~-~P---------------------------~~~~~~l~--pg~hV~aiGs~~p~~~El~~ 223 (301)
T PRK06407 180 LRDADTITSITNSD-TP---------------------------IFNRKYLG--DEYHVNLAGSNYPNRREAEH 223 (301)
T ss_pred HhcCCEEEEecCCC-Cc---------------------------EecHHHcC--CCceEEecCCCCCCcccCCH
Confidence 56899999887654 23 66666664 34578888888888777665
No 143
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=45.55 E-value=1.6e+02 Score=25.98 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=29.5
Q ss_pred EEEeCCc-hhHHHHHHHHHcCCCCceEEEEee-CCCCC--------CCcHHHHHHHHcCCCEEEECC
Q 024606 43 VLASKQE-HCLVDFLYGWQEGKLPVEITCVIS-NHDRG--------PNSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 43 v~~Sg~g-~~l~~ll~~~~~~~l~~~I~~Vit-~~~~~--------~~~~v~~~a~~~gIP~~~~~~ 99 (265)
++.||+- |++ ++..+.+.| .++.++++ ...+. .-..+...|+..|||...++-
T Consensus 2 vl~SGGkDS~~-al~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~ 64 (218)
T TIGR03679 2 ALYSGGKDSNY-ALYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIET 64 (218)
T ss_pred eeecCcHHHHH-HHHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEEC
Confidence 4567753 443 333444444 57755544 22110 113467889999999887763
No 144
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=45.51 E-value=95 Score=30.46 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCCceEEEEEeCCchhHHHHH------HHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCC
Q 024606 36 DPKYKVAVLASKQEHCLVDFL------YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 36 ~~~~rIav~~Sg~g~~l~~ll------~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~ 100 (265)
.+..-+.|++|.+|+..+.+. +.++.+.-.....+++|.+ ++++.++|+++|++++.++..
T Consensus 109 ~~~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip~~ 175 (410)
T PRK03868 109 NLENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIPKN 175 (410)
T ss_pred CCCcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecCCC
Confidence 344557788899987544332 2221100013334466754 456899999999999887754
No 145
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=44.26 E-value=99 Score=29.41 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=35.4
Q ss_pred ceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCCCCC----------C---CcHHHHHHHHcCCCEEEEC
Q 024606 39 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG----------P---NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 39 ~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~----------~---~~~v~~~a~~~gIP~~~~~ 98 (265)
+||+|..||+- | .+..++.. .| .++.++..+.... . ...+.++|+++|||++.++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--QG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 58999999873 3 34444443 23 5677776554111 0 1247889999999998775
No 146
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.24 E-value=1.5e+02 Score=30.30 Aligned_cols=100 Identities=13% Similarity=0.234 Sum_probs=58.3
Q ss_pred cCCCCCCceEEEEEeCC-c--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCC----------------------------
Q 024606 32 VPDIDPKYKVAVLASKQ-E--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------------------------- 80 (265)
Q Consensus 32 ~~~~~~~~rIav~~Sg~-g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~---------------------------- 80 (265)
.....+++=|.|+|-.+ | +||..+-..+.+.+ +.|.-+-|+.-+...
T Consensus 372 ar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNk--frVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgk 449 (587)
T KOG0781|consen 372 ARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNK--FRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGK 449 (587)
T ss_pred HHhcCCCeEEEEEeecCccccchHHHHHHHHHhCC--ceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCC
Confidence 33344567788877733 3 68998877766664 566656666533210
Q ss_pred ------cHHHHHHHHcCCCEEEECCCCC-chHHHHH----HHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhh
Q 024606 81 ------SHVIRFLERHGIPYHYLCAKEN-EREEELL----ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLES 142 (265)
Q Consensus 81 ------~~v~~~a~~~gIP~~~~~~~~~-~~~~~l~----~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~ 142 (265)
-..+++|++.|--+..++...+ .+.+.+. .++. .||+|+.+| ||++|...+..
T Consensus 450 d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg---------ealvg~dsv~q 515 (587)
T KOG0781|consen 450 DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG---------EALVGNDSVDQ 515 (587)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh---------hhhhCcHHHHH
Confidence 1135667777877777764432 2223333 3333 688888877 67776544433
No 147
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=44.18 E-value=1.6e+02 Score=28.82 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=40.1
Q ss_pred CchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHH---HHHHHhhCCCEEEEEecC
Q 024606 48 QEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQNTDFLVLARYM 124 (265)
Q Consensus 48 ~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~---~l~~~l~~~D~vv~ag~~ 124 (265)
.+.....++..+.+. ++.+++=|.+.. + .=.+.|+..|+++...+.-....++ +..+.++++|.+|++++.
T Consensus 275 ~~~~~~~~~~~L~~~--g~~v~~g~l~~~---d-~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~ 348 (402)
T PRK09536 275 GGQPAARAVSRLVAA--GASVSVGPVPEG---D-TAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVA 348 (402)
T ss_pred CCCcHHHHHHHHHHC--CCeEEEecCcCc---c-hhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCc
Confidence 333444455544433 356654444431 1 2267899999999865532222233 334445589999998864
No 148
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.14 E-value=69 Score=29.02 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=35.3
Q ss_pred ceEEEEEeCC-chh-HHHHHHHHHcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 39 YKVAVLASKQ-EHC-LVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 39 ~rIav~~Sg~-g~~-l~~ll~~~~~~~l-~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
|||+|+|.|. |+. ...|+++ |.. +.+| +++++. .......++++.|+.+. .. ..+.+.++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~---g~~~~~~v--~v~~r~--~~~~~~~l~~~~g~~~~--~~--------~~e~~~~a 66 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA---NVVKGEQI--TVSNRS--NETRLQELHQKYGVKGT--HN--------KKELLTDA 66 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC---CCCCcceE--EEECCC--CHHHHHHHHHhcCceEe--CC--------HHHHHhcC
Confidence 6999999876 433 2334332 311 2344 345552 12234566666676422 11 11234578
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+||++-
T Consensus 67 DvVilav 73 (279)
T PRK07679 67 NILFLAM 73 (279)
T ss_pred CEEEEEe
Confidence 9998875
No 149
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=44.08 E-value=1.5e+02 Score=23.42 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEE
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 118 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~v 118 (265)
..+++++++|+ +..||...|-..+ ..+..+|+.++||++.+-. .+|+-..+-....+
T Consensus 23 ~~v~~aik~gk----~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t-----~~eLg~a~Gk~~~~ 81 (104)
T PRK05583 23 NKCEEAIKKKK----VYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS-----KEELGNAIGRDEIK 81 (104)
T ss_pred HHHHHHHHcCC----ceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC-----HHHHHHHhCCCCeE
Confidence 44666666664 3445554443332 4578889999999986532 24565555444333
No 150
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=43.81 E-value=1.1e+02 Score=28.49 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEE
Q 024606 48 QEHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 120 (265)
Q Consensus 48 ~g~~l~~ll~~~~~~~l~~~I~~Vit~-~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ 120 (265)
+++.+..|..+..+|+ ..+|. ++. ++...+..+.....+.|||+..+... .+-..++++|.|++
T Consensus 119 S~tv~~~l~~A~~~gk-~~~V~--v~EsrP~~qG~~la~eL~~~GI~vtlI~Ds------a~~~~m~~vd~Viv 183 (275)
T PRK08335 119 SSAVLEILKTAKRKGK-RFKVI--LTESAPDYEGLALANELEFLGIEFEVITDA------QLGLFAKEATLALV 183 (275)
T ss_pred cHHHHHHHHHHHHcCC-ceEEE--EecCCCchhHHHHHHHHHHCCCCEEEEecc------HHHHHHHhCCEEEE
Confidence 3556666666766664 34443 332 22222344555566789999887632 23334557888764
No 151
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=43.65 E-value=76 Score=28.36 Aligned_cols=59 Identities=14% Similarity=0.181 Sum_probs=38.7
Q ss_pred CCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 36 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 36 ~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
...-|+++|+... ..| ..++..+.++.-+.+|-.|=|.- .+..+..||..|+||...+.
T Consensus 107 ~~~~rlalFvkd~C~~C-~~~~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 107 QGGGRLALFVKDDCVAC-DARVQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCCeEEEEeCCCChHH-HHHHHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 3457999999854 234 33344444444467776555433 46789999999999986654
No 152
>PLN02306 hydroxypyruvate reductase
Probab=43.54 E-value=3.2e+02 Score=26.57 Aligned_cols=114 Identities=10% Similarity=0.020 Sum_probs=65.8
Q ss_pred HHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC---
Q 024606 107 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 183 (265)
Q Consensus 107 ~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~--- 183 (265)
++.++++++|+|++.- | ++-..+++|..+.++..+.+.+=+--| ||.
T Consensus 229 ~L~ell~~sDiV~lh~-----P--------------------lt~~T~~lin~~~l~~MK~ga~lIN~a-----RG~lVD 278 (386)
T PLN02306 229 SMEEVLREADVISLHP-----V--------------------LDKTTYHLINKERLALMKKEAVLVNAS-----RGPVID 278 (386)
T ss_pred CHHHHHhhCCEEEEeC-----C--------------------CChhhhhhcCHHHHHhCCCCeEEEECC-----CccccC
Confidence 3566677899998752 2 122345699999999999876555555 885
Q ss_pred -cHHHHHHHhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 184 -KPAKQAFDAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 184 -~pi~~ai~~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
..+..|+.+|.- ..|.-|+.-..-.| .+++....+-+.|.-...+-.. .+...+.+.+-+..+.+|+
T Consensus 279 e~AL~~AL~sg~i~gAaLDVf~~EP~~~-~~L~~~pNVilTPHiag~T~e~--~~~~~~~~~~ni~~~~~g~ 347 (386)
T PLN02306 279 EVALVEHLKANPMFRVGLDVFEDEPYMK-PGLADMKNAVVVPHIASASKWT--REGMATLAALNVLGKLKGY 347 (386)
T ss_pred HHHHHHHHHhCCeeEEEEeCCCCCCCCc-chHhhCCCEEECCccccCcHHH--HHHHHHHHHHHHHHHHcCC
Confidence 456677777743 35556665554333 3555555666666543222111 1222334445555555554
No 153
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.19 E-value=82 Score=29.81 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=69.2
Q ss_pred HHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhc--CCCeEEecCCCCCCC-----
Q 024606 108 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY--GKDVINIHHGLLPSF----- 180 (265)
Q Consensus 108 l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~--~~~~iNiHpslLP~y----- 180 (265)
+.+.+.++|+|+-+.--. ++-...+-.++-+...++..++.-.+.+...++-+.. +.+++..|+--.|.+
T Consensus 77 l~~av~~aDlViEavpE~---l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVE 153 (321)
T PRK07066 77 IEACVADADFIQESAPER---EALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVE 153 (321)
T ss_pred HHHHhcCCCEEEECCcCC---HHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEE
Confidence 345566899999876332 1100011123334556688888888878777776654 357999999876665
Q ss_pred --CCCcH----HHHHHHhCCCEeEEEEEEecCccCCCCeeEEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 181 --KGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSH-RDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 181 --RG~~p----i~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~~~~I~~-~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
+|... +.++..-.. ..| +.||.- .|+..=+.+|+. ..++.+++..+.+|-
T Consensus 154 Vv~g~~T~~e~~~~~~~f~~-~lG-------------------k~pV~v~kd~pGFi~NRl~---~a~~~EA~~lv~eGv 210 (321)
T PRK07066 154 VLGGERTAPEAVDAAMGIYR-ALG-------------------MRPLHVRKEVPGFIADRLL---EALWREALHLVNEGV 210 (321)
T ss_pred EeCCCCCCHHHHHHHHHHHH-HcC-------------------CEeEecCCCCccHHHHHHH---HHHHHHHHHHHHhCC
Confidence 34322 222221111 122 112222 356667777765 346667777777776
Q ss_pred eeee
Q 024606 254 VLPY 257 (265)
Q Consensus 254 ~~~~ 257 (265)
.++.
T Consensus 211 as~e 214 (321)
T PRK07066 211 ATTG 214 (321)
T ss_pred CCHH
Confidence 6553
No 154
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=42.42 E-value=16 Score=28.97 Aligned_cols=10 Identities=40% Similarity=0.401 Sum_probs=8.9
Q ss_pred ceEEEEEeCC
Q 024606 39 YKVAVLASKQ 48 (265)
Q Consensus 39 ~rIav~~Sg~ 48 (265)
|||.|+|||.
T Consensus 1 MkVLviGsGg 10 (100)
T PF02844_consen 1 MKVLVIGSGG 10 (100)
T ss_dssp EEEEEEESSH
T ss_pred CEEEEECCCH
Confidence 7999999985
No 155
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=42.41 E-value=79 Score=25.94 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=26.9
Q ss_pred cHHHHHHHHcCCCEEEECCCCCchHHHHHHHh----hCCCEEEEEecCC
Q 024606 81 SHVIRFLERHGIPYHYLCAKENEREEELLELV----QNTDFLVLARYMQ 125 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l----~~~D~vv~ag~~~ 125 (265)
..+.+++++.|+.+.....-. .+.+++.+.+ .++|++|+.|=.-
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~-Dd~~~i~~~l~~~~~~~DliIttGG~g 77 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVP-DDPEEIREILRKAVDEADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecC-CCHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 357788899998776543211 1223344433 3799999988443
No 156
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=41.89 E-value=79 Score=27.60 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=38.9
Q ss_pred CCCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 35 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 35 ~~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...+.||+++|.|. |..+...+. ....+.++++++...++.. ... -.|+|+.. -+++.+.++
T Consensus 81 ~~~~~rV~IIGaG~iG~~l~~~~~---~~~~g~~ivgv~D~d~~~~----~~~--i~g~~v~~--------~~~l~~li~ 143 (213)
T PRK05472 81 LDRTWNVALVGAGNLGRALLNYNG---FEKRGFKIVAAFDVDPEKI----GTK--IGGIPVYH--------IDELEEVVK 143 (213)
T ss_pred CCCCcEEEEECCCHHHHHHHHhhh---cccCCcEEEEEEECChhhc----CCE--eCCeEEcC--------HHHHHHHHH
Confidence 34568999999887 333333221 1233589999987542110 001 13566431 134555665
Q ss_pred --CCCEEEEEe
Q 024606 114 --NTDFLVLAR 122 (265)
Q Consensus 114 --~~D~vv~ag 122 (265)
++|.++++-
T Consensus 144 ~~~iD~ViIa~ 154 (213)
T PRK05472 144 ENDIEIGILTV 154 (213)
T ss_pred HCCCCEEEEeC
Confidence 699888774
No 157
>PRK07283 hypothetical protein; Provisional
Probab=41.49 E-value=1.2e+02 Score=23.44 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCCC--cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~~--~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
...++++++|+ +. .|+...|-..+ ..+.+.|+.++||++.+.. .+|+-..+-.
T Consensus 24 ~~v~~aik~gk--~~--lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t-----~~eLG~a~Gk 78 (98)
T PRK07283 24 ELVVKAIQSGQ--AK--LVFLANDAGPNLTKKVTDKSNYYQVEVSTVFS-----TLELSAAVGK 78 (98)
T ss_pred HHHHHHHHcCC--cc--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCC-----HHHHHHHhCC
Confidence 45666777664 33 34444433222 4467889999999986542 2456555544
No 158
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=41.34 E-value=74 Score=31.19 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=40.0
Q ss_pred CceEEEEEeCCchhHHHHHHHHH-cCCCCceEEEEeeCCCCCCCcHHHHHHHHcC-CCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~-~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
.+||+|+|+|+-. +.+..++. .| ..+| .|+|+. ......+++++| ..+..+ +++.+.+.++
T Consensus 181 ~kkvlviGaG~~a--~~va~~L~~~g--~~~I--~V~nRt---~~ra~~La~~~~~~~~~~~--------~~l~~~l~~a 243 (414)
T PRK13940 181 SKNVLIIGAGQTG--ELLFRHVTALA--PKQI--MLANRT---IEKAQKITSAFRNASAHYL--------SELPQLIKKA 243 (414)
T ss_pred CCEEEEEcCcHHH--HHHHHHHHHcC--CCEE--EEECCC---HHHHHHHHHHhcCCeEecH--------HHHHHHhccC
Confidence 4689999998633 22222222 22 1234 566762 345677888876 443221 3455667789
Q ss_pred CEEEEEec
Q 024606 116 DFLVLARY 123 (265)
Q Consensus 116 D~vv~ag~ 123 (265)
|+||.+--
T Consensus 244 DiVI~aT~ 251 (414)
T PRK13940 244 DIIIAAVN 251 (414)
T ss_pred CEEEECcC
Confidence 99998763
No 159
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=40.78 E-value=59 Score=30.41 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
..+++|||+|.- +.++++.... +.+-+.|+.... .....+.+.++++|+++..++. ..+.++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~-~~~~~~~~~~~~~~~~v~~~~~--------~~~av~~a 193 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSP-ERAEAFAARLRDLGVPVVAVDS--------AEEAVRGA 193 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSH-HHHHHHHHHHHCCCTCEEEESS--------HHHHHTTS
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccCh-hHHHHHHHhhccccccceeccc--------hhhhcccC
Confidence 368999999863 3455555432 233334554331 1112234444447888877642 34556799
Q ss_pred CEEEEEecCCCC-cchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCc
Q 024606 116 DFLVLARYMQPV-PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGK 184 (265)
Q Consensus 116 D~vv~ag~~~~i-p~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~ 184 (265)
|+|+.+.-..-- | ++..+.++ ++-.||.-.+.-|..|-..
T Consensus 194 Dii~taT~s~~~~P---------------------------~~~~~~l~--~g~hi~~iGs~~~~~~El~ 234 (313)
T PF02423_consen 194 DIIVTATPSTTPAP---------------------------VFDAEWLK--PGTHINAIGSYTPGMRELD 234 (313)
T ss_dssp SEEEE----SSEEE---------------------------SB-GGGS---TT-EEEE-S-SSTTBESB-
T ss_pred CEEEEccCCCCCCc---------------------------cccHHHcC--CCcEEEEecCCCCchhhcC
Confidence 999998765510 2 55555553 4456777777777666543
No 160
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=40.26 E-value=1.6e+02 Score=24.31 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=34.9
Q ss_pred EEEEEeCC--chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 41 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 41 Iav~~Sg~--g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|++|||-+ |++--++++.. ++ .++|+++.+++ .-..+.+.|++++.++..+.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~--~d-~f~v~~Lsa~~---n~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH--PD-KFEVVALSAGS---NIEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC--TT-TEEEEEEEESS---THHHHHHHHHHHT-SEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhC--CC-ceEEEEEEcCC---CHHHHHHHHHHhCCCEEEEc
Confidence 57888743 55555566553 22 58999998876 33457888999988887664
No 161
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.93 E-value=1.2e+02 Score=23.12 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=26.1
Q ss_pred CcHHHHHHHHcCCCEEEE--CCCCCchHHHHHHHhhCCCEEEEE
Q 024606 80 NSHVIRFLERHGIPYHYL--CAKENEREEELLELVQNTDFLVLA 121 (265)
Q Consensus 80 ~~~v~~~a~~~gIP~~~~--~~~~~~~~~~l~~~l~~~D~vv~a 121 (265)
.....+.++++|...... +.....+...+.+.+.++|+||+.
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 345678888888877665 111112223466777789998764
No 162
>PLN02712 arogenate dehydrogenase
Probab=39.89 E-value=76 Score=33.14 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 35 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 35 ~~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...++||+|+|.|. |..+..-+.. .| ++|.+ + +++. -.+.|++.|+... .. ..+.+.
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~--~G---~~V~~-~-dr~~-----~~~~A~~~Gv~~~--~d--------~~e~~~ 106 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLIS--QG---HTVLA-H-SRSD-----HSLAARSLGVSFF--LD--------PHDLCE 106 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHH--CC---CEEEE-E-eCCH-----HHHHHHHcCCEEe--CC--------HHHHhh
Confidence 44568999999876 4433322222 13 46643 3 3311 1356888887542 11 122232
Q ss_pred -CCCEEEEEe
Q 024606 114 -NTDFLVLAR 122 (265)
Q Consensus 114 -~~D~vv~ag 122 (265)
++|+|+++-
T Consensus 107 ~~aDvViLav 116 (667)
T PLN02712 107 RHPDVILLCT 116 (667)
T ss_pred cCCCEEEEcC
Confidence 689999884
No 163
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=39.66 E-value=1.9e+02 Score=27.02 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEE
Q 024606 49 EHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 120 (265)
Q Consensus 49 g~~l~~ll~~~~~~~l~~~I~~Vit~-~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ 120 (265)
++.+..|.++.++|+ +.+|. ++. ++...+......+.++|||+..++. ..+...++++|.|++
T Consensus 126 ~tv~~~l~~a~~~~~-~f~V~--v~EsrP~~~G~~~a~~L~~~gI~vtlI~D------sa~~~~m~~vd~Viv 189 (301)
T TIGR00511 126 EAALSVIKTAFEQGK-DIEVI--ATETRPRKQGHITAKELRDYGIPVTLIVD------SAVRYFMKEVDHVVV 189 (301)
T ss_pred HHHHHHHHHHHHcCC-cEEEE--EecCCCcchHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 445555666666664 35543 332 2222223345566778999988753 233444556776654
No 164
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=39.60 E-value=94 Score=29.51 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=29.3
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCE
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 94 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~ 94 (265)
|+||+|.|.|. |.. +++++.+ ....++++|.... ......+|+++|.++
T Consensus 1 ~ikVaI~G~GrIGr~---va~al~~-~~d~eLvav~d~~----~~~~~~la~~~G~~~ 50 (341)
T PRK04207 1 MIKVGVNGYGTIGKR---VADAVAA-QPDMELVGVAKTK----PDYEARVAVEKGYPL 50 (341)
T ss_pred CeEEEEECCCHHHHH---HHHHHhc-CCCcEEEEEECCC----hHHHHHHHHhcCCCc
Confidence 57999999866 433 3333332 2257998887532 234455667677664
No 165
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.59 E-value=1.2e+02 Score=29.79 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=39.9
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHc--CCCEEEECCCCCchHHHHHHHhhC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH--GIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~--gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
|+||+++|+|. |+.... ...++++ .+|. +. ++ +.....+.+..- ++-...++.. ..+++.++|++
T Consensus 1 m~~ilviGaG~Vg~~va~--~la~~~d--~~V~-iA-dR---s~~~~~~i~~~~~~~v~~~~vD~~---d~~al~~li~~ 68 (389)
T COG1748 1 MMKILVIGAGGVGSVVAH--KLAQNGD--GEVT-IA-DR---SKEKCARIAELIGGKVEALQVDAA---DVDALVALIKD 68 (389)
T ss_pred CCcEEEECCchhHHHHHH--HHHhCCC--ceEE-EE-eC---CHHHHHHHHhhccccceeEEeccc---ChHHHHHHHhc
Confidence 58999999976 443222 2223443 5664 23 33 122233333322 3666665532 34577788887
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
.|+|+.+.
T Consensus 69 ~d~VIn~~ 76 (389)
T COG1748 69 FDLVINAA 76 (389)
T ss_pred CCEEEEeC
Confidence 79988775
No 166
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=39.54 E-value=78 Score=28.97 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=34.2
Q ss_pred ceEEEEEeCC-chh-HHHHHHHHHcCCCC-ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 39 YKVAVLASKQ-EHC-LVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 39 ~rIav~~Sg~-g~~-l~~ll~~~~~~~l~-~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
+||+|+|.|. |.. +..|+++ |..+ .+| .++++. ......+++++|+-. ... .+ +.++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~---g~~~~~~I--~v~~r~---~~~~~~l~~~~g~~~--~~~-----~~---e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK---NIVSPDQI--ICSDLN---VSNLKNASDKYGITI--TTN-----NN---EVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC---CCCCCceE--EEECCC---HHHHHHHHHhcCcEE--eCC-----cH---HHHhhC
Confidence 6899999887 433 3344332 3222 344 334442 233444555678632 211 11 234588
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+||++=
T Consensus 65 DiIiLav 71 (272)
T PRK12491 65 DILILSI 71 (272)
T ss_pred CEEEEEe
Confidence 9998874
No 167
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=39.25 E-value=95 Score=30.90 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=36.0
Q ss_pred CCCceEEEEEeCCchhHHHHH------HHHH-cC-CCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCC
Q 024606 36 DPKYKVAVLASKQEHCLVDFL------YGWQ-EG-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 36 ~~~~rIav~~Sg~g~~l~~ll------~~~~-~~-~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~ 100 (265)
++..-..+.+|.+|++++.+. +.++ .| .....+ .++|+++ +..+.++|+++|++++.++..
T Consensus 130 ~~~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~-vaiTd~~---~g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 130 DLEKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHL-VFTTDPE---KGKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred CcccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceE-EEEcCCC---ccchHHHHHHcCCcEEeeCCC
Confidence 334446677888887544322 2221 11 112344 3677653 234899999999999988754
No 168
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=39.01 E-value=29 Score=27.80 Aligned_cols=34 Identities=6% Similarity=0.240 Sum_probs=21.4
Q ss_pred ceEEEEEe-CC-chhHHHHHHHHHcCCCCceEEEEeeCCC
Q 024606 39 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 76 (265)
Q Consensus 39 ~rIav~~S-g~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~ 76 (265)
|||++.|. |. |.-+...+.. +. ..++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~--~~--~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE--SP--GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--ST--TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh--cC--CcEEEEEEecCC
Confidence 68999888 55 4433333222 12 489999988764
No 169
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.81 E-value=43 Score=27.15 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=38.3
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~-gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
..|+.|+|.|. ..++++.++..-. ..+| .++|+ ......+++++. +..+..++- +++.+.+.++|
T Consensus 12 ~~~vlviGaGg--~ar~v~~~L~~~g-~~~i--~i~nR---t~~ra~~l~~~~~~~~~~~~~~------~~~~~~~~~~D 77 (135)
T PF01488_consen 12 GKRVLVIGAGG--AARAVAAALAALG-AKEI--TIVNR---TPERAEALAEEFGGVNIEAIPL------EDLEEALQEAD 77 (135)
T ss_dssp TSEEEEESSSH--HHHHHHHHHHHTT-SSEE--EEEES---SHHHHHHHHHHHTGCSEEEEEG------GGHCHHHHTES
T ss_pred CCEEEEECCHH--HHHHHHHHHHHcC-CCEE--EEEEC---CHHHHHHHHHHcCccccceeeH------HHHHHHHhhCC
Confidence 47999999865 2233333333221 1234 45566 234567777776 233333221 12345566899
Q ss_pred EEEEEec
Q 024606 117 FLVLARY 123 (265)
Q Consensus 117 ~vv~ag~ 123 (265)
++|.+.-
T Consensus 78 ivI~aT~ 84 (135)
T PF01488_consen 78 IVINATP 84 (135)
T ss_dssp EEEE-SS
T ss_pred eEEEecC
Confidence 9998853
No 170
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=38.62 E-value=73 Score=30.47 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=34.8
Q ss_pred ceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCC-CC----C-----CC---cHHHHHHHHcCCCEEEEC
Q 024606 39 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNH-DR----G-----PN---SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 39 ~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~-~~----~-----~~---~~v~~~a~~~gIP~~~~~ 98 (265)
+||+|..||+- | .+..++.. .| .+|.+|..+. +. . .. ..+.++|+..|||++.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid 70 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVN 70 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 58999999873 3 34444433 23 5888887631 10 0 00 235788999999998775
No 171
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=38.59 E-value=2.1e+02 Score=27.17 Aligned_cols=63 Identities=14% Similarity=0.319 Sum_probs=36.0
Q ss_pred chhHHHHHHH-HHcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEE
Q 024606 49 EHCLVDFLYG-WQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 120 (265)
Q Consensus 49 g~~l~~ll~~-~~~~~l~~~I~~Vit~~-~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ 120 (265)
.+.+..++.. ...+ ..+.++|+.. ++..+....+..+++|||+..+.. .++-..+.++|.|++
T Consensus 129 S~~v~~~l~~A~~~~---k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~D------sa~~~~~~~vd~Viv 193 (301)
T COG1184 129 SKTVLEVLKTAADRG---KRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVD------SAVGAFMSRVDKVLV 193 (301)
T ss_pred cHHHHHHHHHhhhcC---CceEEEEEcCCCcchHHHHHHHHHHcCCceEEEec------hHHHHHHHhCCEEEE
Confidence 3444555544 3333 2355566643 333345567777899999988753 234445557777754
No 172
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.46 E-value=76 Score=29.89 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.1
Q ss_pred CCCceEEEEEeCC-chhHHHHHH
Q 024606 36 DPKYKVAVLASKQ-EHCLVDFLY 57 (265)
Q Consensus 36 ~~~~rIav~~Sg~-g~~l~~ll~ 57 (265)
..+|||+|+|+|. |+.+...+.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La 27 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICA 27 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHH
Confidence 3468999999998 565665554
No 173
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=37.66 E-value=1.9e+02 Score=27.18 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred hHHHHHHHHHcCCCCceEEEEeeCCCCC----CCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh---CCCEEEEEec
Q 024606 51 CLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ---NTDFLVLARY 123 (265)
Q Consensus 51 ~l~~ll~~~~~~~l~~~I~~Vit~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~---~~D~vv~ag~ 123 (265)
....|++.++.| +-+++||+---+ |+..+.+.|.++||++..++... .-+..++. ..+=.+..||
T Consensus 66 ~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~s----A~~tAL~~SGl~~~~F~F~GF 137 (275)
T COG0313 66 KLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPS----ALITALSASGLPSQRFLFEGF 137 (275)
T ss_pred HHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCcc----HHHHHHHHcCCCCCCeeEecc
Confidence 355666666665 356788865322 35779999999999999887431 22333333 3565666676
Q ss_pred CC
Q 024606 124 MQ 125 (265)
Q Consensus 124 ~~ 125 (265)
.-
T Consensus 138 LP 139 (275)
T COG0313 138 LP 139 (275)
T ss_pred CC
Confidence 53
No 174
>PRK11579 putative oxidoreductase; Provisional
Probab=37.25 E-value=1.2e+02 Score=28.42 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=20.2
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeC
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 74 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~ 74 (265)
+++||+|+|.|.-.. ...+.++..- .++++++|+..
T Consensus 3 ~~irvgiiG~G~i~~-~~~~~~~~~~-~~~~l~av~d~ 38 (346)
T PRK11579 3 DKIRVGLIGYGYASK-TFHAPLIAGT-PGLELAAVSSS 38 (346)
T ss_pred CcceEEEECCCHHHH-HHHHHHHhhC-CCCEEEEEECC
Confidence 358999999887321 1112222221 14789887653
No 175
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=36.85 E-value=1.1e+02 Score=27.50 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=35.4
Q ss_pred CceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~ 98 (265)
..|++|..||+- | .+..++... | .++.+|..+....+ ...+.++|++.|||...++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~--g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA--G---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh--C---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 367999999873 3 344444332 3 45666665542211 1447889999999998775
No 176
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=36.73 E-value=2.7e+02 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=24.5
Q ss_pred cHHHHHHHHcCCCEEEECCCCCchH-HHHHHHhhCCCEEEEEecCC
Q 024606 81 SHVIRFLERHGIPYHYLCAKENERE-EELLELVQNTDFLVLARYMQ 125 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~~~~~~~-~~l~~~l~~~D~vv~ag~~~ 125 (265)
......|.++|+|+..-....+..+ +++.+.-++.-+++...|..
T Consensus 74 ~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 74 LENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 3467788889999885432111111 22333112567777777654
No 177
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=36.69 E-value=2e+02 Score=28.27 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=36.1
Q ss_pred CceEEEEEeC-C-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASK-Q-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg-~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
++||+|+||- + |++--+++... ++ .++|+++..++ .-.-+.+.|++++-.+..+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~--p~-~f~vval~ag~---n~~~l~~q~~~f~P~~v~~~ 57 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRN--PD-KFEVVALAAGK---NVELLAEQIREFKPKYVVIA 57 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhC--CC-cEEEEEEecCC---cHHHHHHHHHHhCCceEEec
Confidence 5799999994 3 55544555542 32 47899988876 23446777888887765433
No 178
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=36.63 E-value=2.1e+02 Score=26.72 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=37.4
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEECCCCCchHHHHHHH
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
..+++++|+|.- ..+.++... . +.+-+.|+ ++. .....++|++ .|+.+..++ ++.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~---~--~i~~v~V~-~R~---~~~a~~~a~~~~~~~g~~v~~~~--------~~~~a 191 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLV---R--DIRSARIW-ARD---SAKAEALALQLSSLLGIDVTAAT--------DPRAA 191 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHh---C--CccEEEEE-CCC---HHHHHHHHHHHHhhcCceEEEeC--------CHHHH
Confidence 468999999862 233444322 1 23333344 552 2234445543 367655432 13344
Q ss_pred hhCCCEEEEEecC
Q 024606 112 VQNTDFLVLARYM 124 (265)
Q Consensus 112 l~~~D~vv~ag~~ 124 (265)
+.++|+|+.+--.
T Consensus 192 v~~aDiVvtaT~s 204 (326)
T TIGR02992 192 MSGADIIVTTTPS 204 (326)
T ss_pred hccCCEEEEecCC
Confidence 5689999998744
No 179
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=35.90 E-value=2e+02 Score=23.37 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCC-C--cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGP-N--SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~-~--~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...++++++|+ +..+ |++ .|-.+ + ..+..+|+++|||+..+..+ +++-.++-
T Consensus 36 ~~v~kaikkgk--akLV-ilA-~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk-----~eLG~a~G 90 (122)
T PRK04175 36 NETTKAVERGI--AKLV-VIA-EDVDPEEIVAHLPLLCEEKKIPYVYVPSK-----KDLGKAAG 90 (122)
T ss_pred HHHHHHHHcCC--ccEE-EEe-CCCChHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHhC
Confidence 55667777664 4443 333 33222 2 46889999999999876532 45666654
No 180
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=35.66 E-value=96 Score=25.94 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=37.0
Q ss_pred CCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECC---CC----------
Q 024606 36 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA---KE---------- 101 (265)
Q Consensus 36 ~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~---~~---------- 101 (265)
-++.||+|+|.|. |.....++..+ +++++.. -.. ....+..+..+.-...+.. ..
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga~v~~~-d~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GAEVVVP-DER-----PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T-EEEEE-ESS-----HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CCEEEec-cCC-----HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 3458999988876 45566666654 4665422 211 1233444555443333321 00
Q ss_pred ---CchHHHHHHHhhCCCEEEEEe
Q 024606 102 ---NEREEELLELVQNTDFLVLAR 122 (265)
Q Consensus 102 ---~~~~~~l~~~l~~~D~vv~ag 122 (265)
...+..+.+.++.+|+++.++
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~ 110 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNG 110 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHH
T ss_pred HHHHHhHHHHHHHHhhCcEEeeec
Confidence 112345666666889998654
No 181
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=35.31 E-value=3.8e+02 Score=25.10 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=54.1
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHH---HHcCCCEEEECCCCCchHHHHHHHh
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL---ERHGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a---~~~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
..+++|+|+|.- ..++++... . +.+-+.|. ++. .....+++ ++.|+++..+.. ..+.+
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~---~--~~~~v~V~-~r~---~~~~~~~~~~~~~~g~~v~~~~~--------~~eav 190 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRV---F--DLEEVSVY-CRT---PSTREKFALRASDYEVPVRAATD--------PREAV 190 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---C--CCCEEEEE-CCC---HHHHHHHHHHHHhhCCcEEEeCC--------HHHHh
Confidence 478999998872 233444332 1 23333444 442 22233333 356777655431 22445
Q ss_pred hCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcH
Q 024606 113 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 185 (265)
Q Consensus 113 ~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~p 185 (265)
+++|+|+++--.+ =| ++..+.++ ++-.||.=.+..|.-|-..+
T Consensus 191 ~~aDiVitaT~s~-~P---------------------------~~~~~~l~--~g~~v~~vGs~~p~~~Eld~ 233 (325)
T TIGR02371 191 EGCDILVTTTPSR-KP---------------------------VVKADWVS--EGTHINAIGADAPGKQELDP 233 (325)
T ss_pred ccCCEEEEecCCC-Cc---------------------------EecHHHcC--CCCEEEecCCCCcccccCCH
Confidence 6899999887443 12 55555442 33456666666676666554
No 182
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.28 E-value=3.4e+02 Score=24.56 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=36.0
Q ss_pred HHhhCCCEEEEEecCCCCcch-hhhhhhhhhhhhhcccCcccccccccCChhHHhhc--CCCeEEecCCCCCCC
Q 024606 110 ELVQNTDFLVLARYMQPVPLQ-KEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY--GKDVINIHHGLLPSF 180 (265)
Q Consensus 110 ~~l~~~D~vv~ag~~~~ip~~-~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~--~~~~iNiHpslLP~y 180 (265)
+.++++|+|+.+-.-. .+ +..+. .++-+.+.++..++.=.+.+.+.++.+.. +.+++++|+-- |.+
T Consensus 80 ~a~~~aDlVieavpe~---~~~k~~~~-~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~-p~~ 148 (287)
T PRK08293 80 EAVKDADLVIEAVPED---PEIKGDFY-EELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFAN-EIW 148 (287)
T ss_pred HHhcCCCEEEEeccCC---HHHHHHHH-HHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCC-CCC
Confidence 4456899999886432 00 01110 12223345677776555655555666543 34689999855 444
No 183
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.90 E-value=1.3e+02 Score=25.88 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=32.2
Q ss_pred EEEeeCCCCC----CCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-C-----CCEEEEEe
Q 024606 69 TCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N-----TDFLVLAR 122 (265)
Q Consensus 69 ~~Vit~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-~-----~D~vv~ag 122 (265)
++||||.... ....+..+.+..|||++....+.-..-+++++.+. + ++=+++.|
T Consensus 80 v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIG 143 (168)
T PF09419_consen 80 VLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVIG 143 (168)
T ss_pred EEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCCchhEEEEc
Confidence 5799987311 13447788899999987654321122245666664 3 65566666
No 184
>PRK07680 late competence protein ComER; Validated
Probab=34.86 E-value=1e+02 Score=27.83 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=32.6
Q ss_pred ceEEEEEeCC-chhH-HHHHHHHHcCCCC-ceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEECCCCCchHHHHHHHhhC
Q 024606 39 YKVAVLASKQ-EHCL-VDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l-~~ll~~~~~~~l~-~~I~~Vit~~~~~~~~~v~~~a~~~-gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
|||+|+|.|. |+.+ ..|++. |.+. .+| .++++. ......++++. |+.+. .. ..+.+.+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~---g~~~~~~v--~v~~r~---~~~~~~~~~~~~g~~~~--~~--------~~~~~~~ 62 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES---GAVKPSQL--TITNRT---PAKAYHIKERYPGIHVA--KT--------IEEVISQ 62 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC---CCCCcceE--EEECCC---HHHHHHHHHHcCCeEEE--CC--------HHHHHHh
Confidence 5899999876 4433 333322 3222 233 334442 22344555554 55432 11 1123457
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|+|+++-
T Consensus 63 aDiVilav 70 (273)
T PRK07680 63 SDLIFICV 70 (273)
T ss_pred CCEEEEec
Confidence 89998875
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=34.64 E-value=65 Score=29.73 Aligned_cols=44 Identities=5% Similarity=0.020 Sum_probs=32.0
Q ss_pred CCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHc
Q 024606 35 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 90 (265)
Q Consensus 35 ~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~ 90 (265)
...++||.|+|.|.|..++.+|+. + .+|+.| .= +..+.+.|+++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh---~---~~v~mV--eI----D~~Vv~~~k~~ 113 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY---D---THVDFV--QA----DEKILDSFISF 113 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc---C---CeeEEE--EC----CHHHHHHHHHH
Confidence 345699999999999999999876 2 255443 32 23588888885
No 186
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=34.45 E-value=78 Score=29.22 Aligned_cols=31 Identities=6% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEE
Q 024606 36 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCV 71 (265)
Q Consensus 36 ~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~V 71 (265)
..+|||+|+|.|. |+.+...|.. .| ++|..+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~--~g---~~V~~~ 34 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLAR--AG---FDVHFL 34 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHH--CC---CeEEEE
Confidence 4458999999887 5555555543 23 567644
No 187
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=34.45 E-value=1.9e+02 Score=27.87 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=35.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCE
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 117 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~ 117 (265)
.++|||+|.|+-...+++. +++.. .+| +|-.+ .++.-.+.|++.|..+..+ .+..+.+|+
T Consensus 18 gK~iaIIGYGsQG~ahalN--LRDSG--lnV--iiGlr---~g~~s~~kA~~dGf~V~~v-----------~ea~k~ADv 77 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALN--LRDSG--LNV--IIGLR---KGSSSWKKAKEDGFKVYTV-----------EEAAKRADV 77 (338)
T ss_pred CCeEEEEecChHHHHHHhh--hhhcC--CcE--EEEec---CCchhHHHHHhcCCEeecH-----------HHHhhcCCE
Confidence 4699999998732222221 11122 333 34444 2333478899999987643 234457777
Q ss_pred EEE
Q 024606 118 LVL 120 (265)
Q Consensus 118 vv~ 120 (265)
|.+
T Consensus 78 im~ 80 (338)
T COG0059 78 VMI 80 (338)
T ss_pred EEE
Confidence 753
No 188
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=34.43 E-value=98 Score=28.14 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=13.5
Q ss_pred CceEEEEEeCC-chhHHHHH
Q 024606 38 KYKVAVLASKQ-EHCLVDFL 56 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll 56 (265)
||||+|+|.|. |+.+...+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L 20 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVL 20 (325)
T ss_pred CCEEEEECCCHHHHHHHHHH
Confidence 47999999987 55554443
No 189
>COG2403 Predicted GTPase [General function prediction only]
Probab=34.32 E-value=95 Score=30.70 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=48.3
Q ss_pred CCCCceEEEEEeCC--chhHHHHHHHHHcCCCCceEEEEee-----CCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHH
Q 024606 35 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVIS-----NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEE 107 (265)
Q Consensus 35 ~~~~~rIav~~Sg~--g~~l~~ll~~~~~~~l~~~I~~Vit-----~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~ 107 (265)
...++|+++++.|. .++....++.. + ..+++++.+ -.++....++......+|||++.. + .-++
T Consensus 3 m~a~kRviiLgaggrdfhv~n~a~r~~--~--~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~--k---~~~~ 73 (449)
T COG2403 3 MKARKRVIILGAGGRDFHVFNVALRDN--P--EYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPE--K---DYDD 73 (449)
T ss_pred CCCceeEEEEeccCcccchhhHHhccC--C--cceEEEEEEEEecCCccccCCCCcccccccCCcccccc--c---cHHH
Confidence 35578999999875 46776665542 2 244444322 122222344566677899999752 2 1356
Q ss_pred HHHHhh--CCCEEEEEecCC
Q 024606 108 LLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 108 l~~~l~--~~D~vv~ag~~~ 125 (265)
+.+.++ ++|.+|++ |.-
T Consensus 74 lek~ire~~VD~~Vla-ySD 92 (449)
T COG2403 74 LEKIIREKDVDIVVLA-YSD 92 (449)
T ss_pred HHHHHHHcCCCeEEEE-ccc
Confidence 677776 78977765 444
No 190
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=34.17 E-value=1.9e+02 Score=25.08 Aligned_cols=156 Identities=16% Similarity=0.180 Sum_probs=77.1
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
.++|+|.|.|. |..+...|.. .| ++|+ +++.+ ...+.++++++|... ++. +++... ++|
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~--~G---~~Vv--v~D~~---~~~~~~~~~~~g~~~--v~~------~~l~~~--~~D 87 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE--EG---AKLI--VADIN---EEAVARAAELFGATV--VAP------EEIYSV--DAD 87 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CC---CEEE--EEcCC---HHHHHHHHHHcCCEE--Ecc------hhhccc--cCC
Confidence 47899998876 4444333332 23 6765 45442 223455556656432 221 122221 799
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcHHHHHHHhCCCE
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 196 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~pi~~ai~~G~~~ 196 (265)
+++.+.-.. ++..+.++..+.++|- =.+--|--. +-...++..
T Consensus 88 v~vp~A~~~------------------------------~I~~~~~~~l~~~~v~-~~AN~~~~~---~~~~~~L~~--- 130 (200)
T cd01075 88 VFAPCALGG------------------------------VINDDTIPQLKAKAIA-GAANNQLAD---PRHGQMLHE--- 130 (200)
T ss_pred EEEeccccc------------------------------ccCHHHHHHcCCCEEE-ECCcCccCC---HhHHHHHHH---
Confidence 998776555 7888888877655432 222222211 333333322
Q ss_pred eEEEEEEecC-ccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee
Q 024606 197 IGATSHFVTE-ELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 255 (265)
Q Consensus 197 ~GvTvH~v~~-~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~~~ 255 (265)
-|+ +++.+ ..-+|-++......+. + ..++..+|+... .+.+.+.++.-.+..+.
T Consensus 131 ~Gi--~~~Pd~~~NaGGv~~~~~e~~~-~-~~~~~~~~~~~~-~~~~~~v~~~a~~~~~~ 185 (200)
T cd01075 131 RGI--LYAPDYVVNAGGLINVADELYG-G-NEARVLAKVEAI-YDTLLEIFAQAKQDGIT 185 (200)
T ss_pred CCC--EEeCceeeeCcCceeehhHHhC-C-cHHHHHHHHHHH-HHHHHHHHHHHHHhCcC
Confidence 233 34443 3335655553222222 2 244566666655 55566665554443443
No 191
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.97 E-value=89 Score=28.45 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=33.0
Q ss_pred EEeCCchhHHHHHHHHHcCCCC--ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 44 LASKQEHCLVDFLYGWQEGKLP--VEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 44 ~~Sg~g~~l~~ll~~~~~~~l~--~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
+|-|.||....+++++.+ ... ..+.+|-|+.. -...|+++|||+...+
T Consensus 24 iGlGTGST~~~fI~~Lg~-~~~~e~~i~~V~TS~~------t~~l~~~~GI~v~~l~ 73 (227)
T COG0120 24 IGLGTGSTAAYFIEALGR-RVKGELDIGGVPTSFQ------TEELARELGIPVSSLN 73 (227)
T ss_pred EEEcCcHHHHHHHHHHHH-hhccCccEEEEeCCHH------HHHHHHHcCCeecCcc
Confidence 556778888878887742 111 35777777542 3688999999987654
No 192
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=33.96 E-value=2.3e+02 Score=22.74 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCC-C--cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGP-N--SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~-~--~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...+++++.|+ +.. ||...|-.+ + ..+..+|+++|||+.++..+ +++=..+-
T Consensus 32 ~~v~kaikkgk--a~L--VilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk-----~eLG~a~G 86 (117)
T TIGR03677 32 NEVTKAVERGI--AKL--VVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK-----EDLGAAAG 86 (117)
T ss_pred HHHHHHHHcCC--ccE--EEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH-----HHHHHHhC
Confidence 45666776664 333 333333322 2 56788999999998876532 45655554
No 193
>PRK06932 glycerate dehydrogenase; Provisional
Probab=33.86 E-value=4e+02 Score=24.90 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=45.4
Q ss_pred HHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC---
Q 024606 107 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 183 (265)
Q Consensus 107 ~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~--- 183 (265)
.+.+++.++|+|++.- |.- =-.+++|..+.++..+.+.+=+--| ||.
T Consensus 190 ~l~ell~~sDiv~l~~-----Plt--------------------~~T~~li~~~~l~~mk~ga~lIN~a-----RG~~Vd 239 (314)
T PRK06932 190 PFEEVLKQADIVTLHC-----PLT--------------------ETTQNLINAETLALMKPTAFLINTG-----RGPLVD 239 (314)
T ss_pred CHHHHHHhCCEEEEcC-----CCC--------------------hHHhcccCHHHHHhCCCCeEEEECC-----CccccC
Confidence 3556677899998753 322 2245699999999998875444433 774
Q ss_pred -cHHHHHHHhCCCE-eEEEEEEecC
Q 024606 184 -KPAKQAFDAGVKL-IGATSHFVTE 206 (265)
Q Consensus 184 -~pi~~ai~~G~~~-~GvTvH~v~~ 206 (265)
..+..|+.+|.-. .|.-|+.-..
T Consensus 240 e~AL~~aL~~g~i~gAaLDV~~~EP 264 (314)
T PRK06932 240 EQALLDALENGKIAGAALDVLVKEP 264 (314)
T ss_pred HHHHHHHHHcCCccEEEEecCCCCC
Confidence 5677788888642 4555655544
No 194
>PRK06823 ornithine cyclodeaminase; Validated
Probab=33.86 E-value=4e+02 Score=24.97 Aligned_cols=105 Identities=9% Similarity=0.052 Sum_probs=61.7
Q ss_pred CCceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 37 PKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 37 ~~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
...++++||+|.- +.+++++.. . +.+=+.|+.... .....+.+.+++.|+++..++. ..+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v---~--~i~~v~v~~r~~-~~a~~~~~~~~~~~~~v~~~~~--------~~~av~~ 192 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV---T--DCRQLWVWGRSE-TALEEYRQYAQALGFAVNTTLD--------AAEVAHA 192 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc---C--CCCEEEEECCCH-HHHHHHHHHHHhcCCcEEEECC--------HHHHhcC
Confidence 3478999999862 345554443 1 233333443321 1112233445555888765431 2345568
Q ss_pred CCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcH
Q 024606 115 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 185 (265)
Q Consensus 115 ~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~p 185 (265)
+|+|+.+--.. =| ++..+.++ ++-.||.=.|..|..|-..|
T Consensus 193 ADIV~taT~s~-~P---------------------------~~~~~~l~--~G~hi~~iGs~~p~~~Eld~ 233 (315)
T PRK06823 193 ANLIVTTTPSR-EP---------------------------LLQAEDIQ--PGTHITAVGADSPGKQELDA 233 (315)
T ss_pred CCEEEEecCCC-Cc---------------------------eeCHHHcC--CCcEEEecCCCCcccccCCH
Confidence 99999987554 23 66666664 45578888888888887665
No 195
>PHA00771 head assembly protein
Probab=33.84 E-value=59 Score=27.32 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=36.7
Q ss_pred eEEecCCCCCCCCCCcH----HHHHHHhCCCEeEEEEEEecCccCCCCeeEEE
Q 024606 169 VINIHHGLLPSFKGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQM 217 (265)
Q Consensus 169 ~iNiHpslLP~yRG~~p----i~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q~ 217 (265)
.+-.|+=.+|.+||... .+|-.+-.-...-+++-++.+..--|.+|.|-
T Consensus 62 ~~ecHa~y~P~fRG~ya~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~l 114 (151)
T PHA00771 62 TFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAM 114 (151)
T ss_pred EEEEEeeeCccccchhHHHHHHHHHHHhcCCceeEEEEecccccccchhhhhh
Confidence 78899999999999754 34544433345667777888888999998873
No 196
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=33.79 E-value=88 Score=30.97 Aligned_cols=76 Identities=11% Similarity=0.184 Sum_probs=40.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHH-c-CCCC-ceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQ-E-GKLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~-~-~~l~-~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
|||+|+|.|+. --..|++.+. . ..++ .+|+.+=.+..+.. ..-+.+.++++|.++....+. +..+.|+
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Tt------dr~eAl~ 73 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTT------DPEEAFT 73 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEEC------CHHHHhC
Confidence 79999998774 2223444332 2 2354 56654433321111 122455667788886543322 1345667
Q ss_pred CCCEEEEE
Q 024606 114 NTDFLVLA 121 (265)
Q Consensus 114 ~~D~vv~a 121 (265)
++|+|+..
T Consensus 74 gADfVi~~ 81 (437)
T cd05298 74 DADFVFAQ 81 (437)
T ss_pred CCCEEEEE
Confidence 89998754
No 197
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=33.54 E-value=2.4e+02 Score=26.44 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEE
Q 024606 48 QEHCLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 120 (265)
Q Consensus 48 ~g~~l~~ll~~~~~~~l~~~I~~Vit~~-~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ 120 (265)
+++.+..|.++.++|+ +.+| +++.. +...+........+.|||+..++. ..+...++++|.|++
T Consensus 130 S~tv~~~l~~A~~~~k-~~~V--~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D------sav~~~m~~vd~Viv 194 (310)
T PRK08535 130 SSAALSVIKTAHEQGK-DIEV--IATETRPRNQGHITAKELAEYGIPVTLIVD------SAVRYFMKDVDKVVV 194 (310)
T ss_pred cHHHHHHHHHHHHCCC-eEEE--EEecCCchhhHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 3555666667766664 3444 34322 111123345556788999988763 234444556676654
No 198
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=33.35 E-value=1.8e+02 Score=26.22 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=28.0
Q ss_pred eEEEEEeCCchhH---HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQEHCL---VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g~~l---~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
||.+.+.|.|..+ ..+.+++.+. .++|. |+|.... .........|++++.++
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~--G~ev~-v~~~~~~----~~~~~~~~~~~~~~~~~ 55 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER--GAEVL-FLGTKRG----LEARLVPKAGIPLHTIP 55 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC--CCEEE-EEECCCc----chhhcccccCCceEEEE
Confidence 4666666655433 3566666542 37776 4444321 11233445688887765
No 199
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=33.22 E-value=75 Score=31.07 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=10.5
Q ss_pred CCceEEEEEeCCc
Q 024606 37 PKYKVAVLASKQE 49 (265)
Q Consensus 37 ~~~rIav~~Sg~g 49 (265)
++|||.|+|||..
T Consensus 3 ~~~kvLviG~g~r 15 (426)
T PRK13789 3 VKLKVLLIGSGGR 15 (426)
T ss_pred CCcEEEEECCCHH
Confidence 4599999999863
No 200
>PRK07589 ornithine cyclodeaminase; Validated
Probab=33.15 E-value=4.2e+02 Score=25.39 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=57.8
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
..++++||+|.- +.+++++... +.+=+.|+ ++.......+.+..++.|+++..++. ..+.++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--------~~~av~~A 194 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALL-----GIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--------VAEAVEGA 194 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--------HHHHHhcC
Confidence 478999999862 3455554431 22223344 33211112233333445787765431 33556689
Q ss_pred CEEEEEecCC-CCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCCcH
Q 024606 116 DFLVLARYMQ-PVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 185 (265)
Q Consensus 116 D~vv~ag~~~-~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~~p 185 (265)
|+|+.+.-.. ..| +++.+.++ ++-.||.=.|.-|.-|-..+
T Consensus 195 DIIvtaT~S~~~~P---------------------------vl~~~~lk--pG~hV~aIGs~~p~~~Eld~ 236 (346)
T PRK07589 195 DIITTVTADKTNAT---------------------------ILTDDMVE--PGMHINAVGGDCPGKTELHP 236 (346)
T ss_pred CEEEEecCCCCCCc---------------------------eecHHHcC--CCcEEEecCCCCCCcccCCH
Confidence 9999987432 113 56655552 34467777777787776554
No 201
>PRK08618 ornithine cyclodeaminase; Validated
Probab=33.10 E-value=1.2e+02 Score=28.31 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=37.0
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHH----HcCCCEEEECCCCCchHHHHHHH
Q 024606 38 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE----RHGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 38 ~~rIav~~Sg~g~--~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~----~~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
..+++++|+|.-. .+.+++.. . +.+-+.|+. +. .....++++ ++++++..+.. +.+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~---~--~~~~v~v~~-r~---~~~a~~~~~~~~~~~~~~~~~~~~--------~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV---R--DIERVRVYS-RT---FEKAYAFAQEIQSKFNTEIYVVNS--------ADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc---C--CccEEEEEC-CC---HHHHHHHHHHHHHhcCCcEEEeCC--------HHHH
Confidence 4689999998632 23333321 1 234444554 32 223344444 45776554321 2334
Q ss_pred hhCCCEEEEEecC
Q 024606 112 VQNTDFLVLARYM 124 (265)
Q Consensus 112 l~~~D~vv~ag~~ 124 (265)
+.++|+|+.+--.
T Consensus 190 ~~~aDiVi~aT~s 202 (325)
T PRK08618 190 IEEADIIVTVTNA 202 (325)
T ss_pred HhcCCEEEEccCC
Confidence 4689999988643
No 202
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=33.03 E-value=65 Score=29.81 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCCCCCcHHHHHHHhCCCEeEEEEEEecC-ccCCCC
Q 024606 177 LPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGP 212 (265)
Q Consensus 177 LP~yRG~~pi~~ai~~G~~~~GvTvH~v~~-~~D~G~ 212 (265)
.+.++|...+-+.|.+.....|+.+...++ ++|.|-
T Consensus 91 ~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~ 127 (277)
T cd07364 91 VPDVQGHPDLAWHIAQSLILDDFDMTIVNEMDVDHGL 127 (277)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcch
Confidence 446888888888887666666776666554 578773
No 203
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=32.96 E-value=1.3e+02 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=24.6
Q ss_pred CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 65 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 65 ~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
.++|...-||+-...+..+..+++..|||++.+.
T Consensus 69 GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~k 102 (420)
T COG0499 69 GAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWK 102 (420)
T ss_pred CceEEEecCCCCcccHHHHHHHhhccCceEEEEc
Confidence 5888877777754445556666677799999864
No 204
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=32.94 E-value=2.7e+02 Score=23.09 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=23.2
Q ss_pred CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEe
Q 024606 80 NSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 122 (265)
Q Consensus 80 ~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag 122 (265)
..++..+..+.|.-+..+..+. .++.+.++++|+++++-
T Consensus 41 G~pla~lL~~~gatV~~~~~~t----~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 41 GAPLQCLLQRDGATVYSCDWKT----IQLQSKVHDADVVVVGS 79 (140)
T ss_pred HHHHHHHHHHCCCEEEEeCCCC----cCHHHHHhhCCEEEEec
Confidence 4556666666677766654221 23445566888887764
No 205
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=32.75 E-value=1.4e+02 Score=28.56 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=34.0
Q ss_pred CceEEEEEeCC-chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
.+||+|+|.|. |+.+ ..|.+. | .+|. +..+. .....+.|++.|+.+. + ..+.++++
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~s---G---~~Vv--v~~r~---~~~s~~~A~~~G~~~~--s---------~~eaa~~A 74 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDS---G---VDVV--VGLRE---GSKSWKKAEADGFEVL--T---------VAEAAKWA 74 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHC---C---CEEE--EEECC---chhhHHHHHHCCCeeC--C---------HHHHHhcC
Confidence 37899999987 5443 333322 3 4553 22221 1223556777786421 1 23445588
Q ss_pred CEEEEE
Q 024606 116 DFLVLA 121 (265)
Q Consensus 116 D~vv~a 121 (265)
|+|+++
T Consensus 75 DVVvLa 80 (330)
T PRK05479 75 DVIMIL 80 (330)
T ss_pred CEEEEc
Confidence 999875
No 206
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.53 E-value=1.7e+02 Score=24.22 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=31.1
Q ss_pred CceEEEEEeCC-chhHH-HHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~-~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
|+||+|+|-|. |+.+. .|+++ | +++. +.++. ... .+.+.+.|+ ..++. ..++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~---g---~~v~--~~d~~---~~~-~~~~~~~g~--~~~~s--------~~e~~~~~ 58 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA---G---YEVT--VYDRS---PEK-AEALAEAGA--EVADS--------PAEAAEQA 58 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT---T---TEEE--EEESS---HHH-HHHHHHTTE--EEESS--------HHHHHHHB
T ss_pred CCEEEEEchHHHHHHHHHHHHhc---C---CeEE--eeccc---hhh-hhhhHHhhh--hhhhh--------hhhHhhcc
Confidence 68999999988 66654 44333 3 5653 33442 222 333444463 22221 23344567
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+|+++=
T Consensus 59 dvvi~~v 65 (163)
T PF03446_consen 59 DVVILCV 65 (163)
T ss_dssp SEEEE-S
T ss_pred cceEeec
Confidence 9998763
No 207
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=32.49 E-value=1.9e+02 Score=26.03 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=38.5
Q ss_pred CceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC-----CcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~-----~~~v~~~a~~~gIP~~~~~ 98 (265)
..||+|..||+. +.|..++..+... .++.+|-.++.-.. ...+..+|+..|+|..+..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVER 85 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEE
Confidence 579999999873 3455555554321 56777766664322 1347889999999887654
No 208
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=32.32 E-value=1.8e+02 Score=27.80 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHcCCCCceEEEEeeC-CCCCCCcHH-HHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEE
Q 024606 49 EHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHV-IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 120 (265)
Q Consensus 49 g~~l~~ll~~~~~~~l~~~I~~Vit~-~~~~~~~~v-~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ 120 (265)
|+.+..|..+.++|+ ... .+++. ++...+... .....+.|||+..+... .+-..++ ++|.|++
T Consensus 165 gtal~~l~~A~~~g~-~~~--V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds------av~~~m~~~~vd~Viv 231 (331)
T TIGR00512 165 GTALGVIRSAHEKGR-LEH--VYADETRPRLQGARLTAWELVQEGIPATLITDS------MAAHLMKHGEVDAVIV 231 (331)
T ss_pred chHHHHHHHHHHcCC-ceE--EEECCCCchhhHHHHHHHHHHHCCCCEEEEccc------HHHHHhcccCCCEEEE
Confidence 455666666666664 233 34442 221112222 34567899999887632 3444555 6888764
No 209
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=32.22 E-value=99 Score=30.43 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=39.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHH-cC-CCC-ceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQ-EG-KLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~-~~-~l~-~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
+||+|+|.|+.- -..|++.+. .. .++ .+|+.+=.++++.. ..-+.++++++|.++....+. +..+.++
T Consensus 1 ~KI~iIGgGS~~-tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~tt------D~~~Al~ 73 (425)
T cd05197 1 VKIAIIGGGSSF-TPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTM------DLEDAII 73 (425)
T ss_pred CEEEEECCchHh-HHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeC------CHHHHhC
Confidence 699999987731 122333322 23 344 56654432322111 122456667888776543222 1345666
Q ss_pred CCCEEEEE
Q 024606 114 NTDFLVLA 121 (265)
Q Consensus 114 ~~D~vv~a 121 (265)
++|+|+..
T Consensus 74 gADfVi~~ 81 (425)
T cd05197 74 DADFVINQ 81 (425)
T ss_pred CCCEEEEe
Confidence 89988753
No 210
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=32.15 E-value=3e+02 Score=23.69 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=34.9
Q ss_pred CceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEec
Q 024606 65 PVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 123 (265)
Q Consensus 65 ~~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag~ 123 (265)
...|+.|-|...... .....+..++.|.....+.......++++.+.+.++|.|++.|=
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG 89 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGG 89 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCC
Confidence 356655544432211 12355666777887765543211234677888889999999983
No 211
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.99 E-value=3e+02 Score=26.78 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=39.8
Q ss_pred EEEEEeCCchh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCC--chHHHHHHHhh--CC
Q 024606 41 VAVLASKQEHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ--NT 115 (265)
Q Consensus 41 Iav~~Sg~g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~--~~~~~l~~~l~--~~ 115 (265)
-.|+.||+|++ +++.+-...++ +-.+..+.+.- ..-...+.++++|+.+.++..+.. ..-+++.+.+. .+
T Consensus 69 ~tf~isgsGh~g~E~al~N~leP--gd~vLv~~~G~---wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p 143 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEP--GDNVLVVSTGT---WGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKP 143 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCC--CCeEEEEEech---HHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCC
Confidence 45677888765 34333222222 12333333322 223356778888988888764421 22356666665 46
Q ss_pred CEEEEE
Q 024606 116 DFLVLA 121 (265)
Q Consensus 116 D~vv~a 121 (265)
-+++++
T Consensus 144 ~~vfv~ 149 (385)
T KOG2862|consen 144 KAVFVT 149 (385)
T ss_pred ceEEEE
Confidence 666654
No 212
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=31.81 E-value=65 Score=24.22 Aligned_cols=52 Identities=29% Similarity=0.489 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCCC--c-HHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGPN--S-HVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~~--~-~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
....+++..++ +.. ||-..|-.++ . .+..+|++++||++.++. .+++-+++.
T Consensus 21 ~~v~k~l~~~~--~~l--vilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s-----~~eLG~~~g 75 (95)
T PF01248_consen 21 KEVLKALKKGK--AKL--VILAEDCSPDSIKKHLPALCEEKNIPYVFVPS-----KEELGRACG 75 (95)
T ss_dssp HHHHHHHHTTC--ESE--EEEETTSSSGHHHHHHHHHHHHTTEEEEEESH-----HHHHHHHTT
T ss_pred HHHHHHHHcCC--CcE--EEEcCCCChhhhcccchhheeccceeEEEECC-----HHHHHHHHC
Confidence 55666666663 344 3333332222 2 266899999999988752 246666664
No 213
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=31.68 E-value=89 Score=24.93 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...+++++.|+ +..||...|-++ -..+..+|+.+|||++.+.. ..+|+=..+-
T Consensus 31 ~~vlkalk~gk----aklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~----t~~eLG~A~G 85 (108)
T PTZ00106 31 KSTLKALRNGK----AKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAG----NNNDLGTACG 85 (108)
T ss_pred HHHHHHHHcCC----eeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC----CHHHHHHHhC
Confidence 34555666553 333444343322 24578899999999986432 1245655553
No 214
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=31.41 E-value=3.5e+02 Score=25.92 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
+..|++|+|.|. |......+..+ | ++|. ++ +++ .....+.+...|-.+.. .. ...+++.+.+.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l--G---a~V~-v~-d~~---~~~~~~l~~~~g~~v~~-~~---~~~~~l~~~l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL--G---ATVT-IL-DIN---IDRLRQLDAEFGGRIHT-RY---SNAYEIEDAVKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC--C---CeEE-EE-ECC---HHHHHHHHHhcCceeEe-cc---CCHHHHHHHHccC
Confidence 346799988765 33333333332 3 5543 33 331 12233444555654332 11 1234566677789
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|++|.+-
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999764
No 215
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=31.35 E-value=83 Score=29.92 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=34.9
Q ss_pred CCceEEEEEeCCchhHHHH--------HHHHHcCCCCceE-EEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 37 PKYKVAVLASKQEHCLVDF--------LYGWQEGKLPVEI-TCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~l--------l~~~~~~~l~~~I-~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
+.-||.+||....+-+..+ ++.+-+ .+. +.|++.. -.....+.+.|++++||+...+
T Consensus 47 ~~~riq~~G~~E~~f~~~~~~~~r~~~i~~~~~----~~~P~iI~sk~-~~~p~~l~~~a~~~~~pil~s~ 112 (308)
T COG1493 47 PPERIQLLGKKESSFLNQLSSEERKKRIGKLFS----LDTPALIVSKG-LPIPEELLDAAKKYNIPILTSK 112 (308)
T ss_pred CcCeEEEechhHHHHHHhcChhhHHHHHHHHhC----cCCCEEEEECC-CCCCHHHHHHHHHcCCceEEec
Confidence 4579999998875544332 222222 223 3345543 2334568999999999998754
No 216
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=31.28 E-value=5.6e+02 Score=25.80 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=86.2
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCE
Q 024606 39 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 117 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~ 117 (265)
++|+|+|.|. |..+...+.++ ..+|.+ .++... .+.+.+.|+... + ++.++++++|+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-----G~~V~~--~d~~~~-----~~~~~~~g~~~~--~--------~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-----GMKVLA--YDPYIS-----PERAEQLGVELV--D--------DLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCEEEE--ECCCCC-----hhHHHhcCCEEc--C--------CHHHHHhhCCE
Confidence 6899999887 55554444442 355543 233111 233455665321 1 24456668999
Q ss_pred EEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHhC
Q 024606 118 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAG 193 (265)
Q Consensus 118 vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G 193 (265)
|+++- |..+ -..+++..+.++..+.+.+=+--| ||. ..+..|+.+|
T Consensus 197 V~l~l-----Plt~--------------------~T~~li~~~~l~~mk~ga~lIN~a-----RG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHT-----PLTP--------------------ETRGLIGAEELAKMKKGVIIVNCA-----RGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEcc-----CCCh--------------------hhccCcCHHHHhcCCCCeEEEEcC-----CCceeCHHHHHHHHHcC
Confidence 98764 2111 133488899999887764433333 664 4567777887
Q ss_pred CC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 194 VK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 194 ~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
.- ..|.-|+.-..-.| -+.+.-..+-+.|.-...+... .....+.+.+.+..+.+|+
T Consensus 247 ~i~gAaLDVf~~EP~~~-~pL~~~~nvi~TPHia~~t~e~--~~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 247 HVRAAALDVFEKEPPTD-NPLFDLDNVIATPHLGASTREA--QENVATQVAEQVLDALKGL 304 (525)
T ss_pred CeeEEEEecCCCCCCCC-ChhhcCCCeEECCCccccHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 53 34556665554333 3555555566666543322221 1222344455555666664
No 217
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=31.11 E-value=77 Score=29.38 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=21.9
Q ss_pred CCCCCCCcHHHHHHHhCCCEeEEEEEEec-CccCCCC
Q 024606 177 LPSFKGGKPAKQAFDAGVKLIGATSHFVT-EELDAGP 212 (265)
Q Consensus 177 LP~yRG~~pi~~ai~~G~~~~GvTvH~v~-~~~D~G~ 212 (265)
.+.++|...+-+.|.......|+.+.... -++|.|-
T Consensus 91 ~~~~~g~~eLA~~i~~~~~~~g~~~~~~~~~~lDHG~ 127 (279)
T PRK13365 91 LPPIRGDVQLQAHIAECLVNDEFDLTVFQDKPIDHGC 127 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeeeccCCCCCchh
Confidence 35677777777777665555555554443 3577664
No 218
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=31.06 E-value=4.1e+02 Score=24.44 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=46.3
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCE-EEEC--CCCCchH-------H
Q 024606 39 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY-HYLC--AKENERE-------E 106 (265)
Q Consensus 39 ~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~-~~~~--~~~~~~~-------~ 106 (265)
|||+++..... .-+..++.++++. ...+...|+|.... .-+.++.+.+||+. +.+. ....... .
T Consensus 1 ~~i~~~~gtr~~~~~~~p~~~~l~~~-~~~~~~~~~tg~h~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAPLIRALKKY-PEIDSYVIVTAQHR---EMLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLE 76 (365)
T ss_pred CeEEEEEecCHHHHHHHHHHHHHhhC-CCCCEEEEEeCCCH---HHHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHH
Confidence 58887765442 3567788887642 12456667886531 34567777799863 2111 1111111 2
Q ss_pred HHHHHhh--CCCEEEEEec
Q 024606 107 ELLELVQ--NTDFLVLARY 123 (265)
Q Consensus 107 ~l~~~l~--~~D~vv~ag~ 123 (265)
++.+.++ +||+|++.|.
T Consensus 77 ~l~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 3444554 7999999874
No 219
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=30.97 E-value=55 Score=28.63 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=39.3
Q ss_pred eEEEEEeCCch-hHHHHHHHHHcCCCC-ceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 40 KVAVLASKQEH-CLVDFLYGWQEGKLP-VEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 40 rIav~~Sg~g~-~l~~ll~~~~~~~l~-~~I~~Vit~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
||+|+|.|+-. .+.-+-+......++ .+|+. .+.|... ..-+.++++++|.++...... +..+.++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L--~Did~~RL~~~~~~~~~~~~~~~~~~~v~~tt------d~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVL--MDIDEERLEIVERLARRMVEEAGADLKVEATT------DRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEE--E-SCHHHHHHHHHHHHHHHHHCTTSSEEEEES------SHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEE--EcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeC------CHHHHhC
Confidence 78898877642 222222223345555 35543 3332211 123566778889887653322 2345677
Q ss_pred CCCEEEEE
Q 024606 114 NTDFLVLA 121 (265)
Q Consensus 114 ~~D~vv~a 121 (265)
++|+|+..
T Consensus 73 gADfVi~~ 80 (183)
T PF02056_consen 73 GADFVINQ 80 (183)
T ss_dssp TESEEEE-
T ss_pred CCCEEEEE
Confidence 99999864
No 220
>PRK08655 prephenate dehydrogenase; Provisional
Probab=30.95 E-value=1.1e+02 Score=29.95 Aligned_cols=64 Identities=16% Similarity=0.389 Sum_probs=34.3
Q ss_pred ceEEEEE-eCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 39 YKVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 39 ~rIav~~-Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
|||+|+| +|. |..+...+.. .| ++|. ++ +++ .....+.|++.|+.+. . +..+.+.++|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~--~G---~~V~-v~-~r~---~~~~~~~a~~~gv~~~---~-------~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE--KG---FEVI-VT-GRD---PKKGKEVAKELGVEYA---N-------DNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH--CC---CEEE-EE-ECC---hHHHHHHHHHcCCeec---c-------CHHHHhccCC
Confidence 6899997 565 4433332222 23 4553 23 332 1234577888887421 1 1223455889
Q ss_pred EEEEEe
Q 024606 117 FLVLAR 122 (265)
Q Consensus 117 ~vv~ag 122 (265)
+|+++-
T Consensus 61 vVIlav 66 (437)
T PRK08655 61 IVIISV 66 (437)
T ss_pred EEEEec
Confidence 998875
No 221
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=30.91 E-value=1.6e+02 Score=26.22 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=33.0
Q ss_pred ceEEEEEeCC-chh-HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEECCCCCchHHHHHHHhhCC
Q 024606 39 YKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 39 ~rIav~~Sg~-g~~-l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~-gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
|||+|+|.|. |.. .+.|++. | ....- ..+++++ .....++++++ |+.+. .. .+ +.++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~---g-~~~~~-i~v~~r~---~~~~~~l~~~~~~~~~~--~~-----~~---~~~~~a 62 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS---P-ADVSE-IIVSPRN---AQIAARLAERFPKVRIA--KD-----NQ---AVVDRS 62 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC---C-CChhe-EEEECCC---HHHHHHHHHHcCCceEe--CC-----HH---HHHHhC
Confidence 5899999886 332 3344332 3 11111 2345542 23345566655 33322 11 12 234478
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+|+++-
T Consensus 63 DvVilav 69 (258)
T PRK06476 63 DVVFLAV 69 (258)
T ss_pred CEEEEEe
Confidence 9999885
No 222
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=30.85 E-value=17 Score=29.59 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred CceEEEEEeCCchhH--------HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQEHCL--------VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l--------~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
+.||-|+|...-+-| ...++.+-+ .++.|+|-.++-.+...+.+.|+++|+|+...+
T Consensus 48 ~~RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~----~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 48 PNRIQIIGNTESAYLNSLDEEERKERLEKLFS----YNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp TCSEEEE-HHHHHHHCCS-HHHHCCHHHHHCT----TT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred CCeEEEEcHHHHHHHHHCCHHHHHHHHHHHhC----CCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 359999997653211 123333322 334444443433445678999999999999754
No 223
>PRK08291 ectoine utilization protein EutC; Validated
Probab=30.81 E-value=91 Score=29.25 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=37.8
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEECCCCCchHHHHHHH
Q 024606 38 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLEL 111 (265)
Q Consensus 38 ~~rIav~~Sg~g~--~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~~~~l~~~ 111 (265)
.++++++|+|.-. .+.++... . +.+-+.|+ ++. .....+++++ .|+++..+. ++.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~---~--~~~~V~v~-~R~---~~~a~~l~~~~~~~~g~~v~~~~--------d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLV---R--PIREVRVW-ARD---AAKAEAYAADLRAELGIPVTVAR--------DVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---C--CCCEEEEE-cCC---HHHHHHHHHHHhhccCceEEEeC--------CHHHH
Confidence 3689999998632 22333221 2 23333344 442 2334555553 467654432 12344
Q ss_pred hhCCCEEEEEecCC
Q 024606 112 VQNTDFLVLARYMQ 125 (265)
Q Consensus 112 l~~~D~vv~ag~~~ 125 (265)
+.++|+|+.+--.+
T Consensus 195 l~~aDiVi~aT~s~ 208 (330)
T PRK08291 195 VAGADIIVTTTPSE 208 (330)
T ss_pred HccCCEEEEeeCCC
Confidence 55899999887543
No 224
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=30.78 E-value=4.8e+02 Score=25.31 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=23.3
Q ss_pred CCceEEEEEeCCchhHHHHHHHHH-cCCCCceEEEEeeCC
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNH 75 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~-~~~l~~~I~~Vit~~ 75 (265)
.+.|++++|+|. ..+.+++.++ ++..+.++++++...
T Consensus 124 ~~rrvlIiGag~--~~~~l~~~l~~~~~~g~~vvGfidd~ 161 (456)
T TIGR03022 124 WGRPAVIIGAGQ--NAAILYRALQSNPQLGLRPLAVVDTD 161 (456)
T ss_pred CCceEEEEeCCH--HHHHHHHHHhhCccCCcEEEEEEeCC
Confidence 346788888765 3344555543 234457899988754
No 225
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=30.77 E-value=3.4e+02 Score=23.19 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=32.6
Q ss_pred CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEecC
Q 024606 65 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYM 124 (265)
Q Consensus 65 ~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag~~ 124 (265)
.++|.+++-+. +....+..+..|+-+...+- .+.+.+.+.++++|.|+++...
T Consensus 22 ~~~V~~l~R~~----~~~~~~~l~~~g~~vv~~d~---~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 22 GFSVRALVRDP----SSDRAQQLQALGAEVVEADY---DDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp TGCEEEEESSS----HHHHHHHHHHTTTEEEES-T---T-HHHHHHHHTTCSEEEEESSC
T ss_pred CCCcEEEEecc----chhhhhhhhcccceEeeccc---CCHHHHHHHHcCCceEEeecCc
Confidence 47776555432 33345556778886654331 2456788888899999877653
No 226
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=30.65 E-value=1.3e+02 Score=27.90 Aligned_cols=69 Identities=23% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHc-CCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYGWQE-GKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~~~~-~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
+.+||+|+|.|. |..+ +..+.. | ..+| .++++. .....++|+++|..+. + -+++.+.+.+
T Consensus 177 ~~~~V~ViGaG~iG~~~---a~~L~~~g--~~~V--~v~~r~---~~ra~~la~~~g~~~~--~------~~~~~~~l~~ 238 (311)
T cd05213 177 KGKKVLVIGAGEMGELA---AKHLAAKG--VAEI--TIANRT---YERAEELAKELGGNAV--P------LDELLELLNE 238 (311)
T ss_pred cCCEEEEECcHHHHHHH---HHHHHHcC--CCEE--EEEeCC---HHHHHHHHHHcCCeEE--e------HHHHHHHHhc
Confidence 468999998865 3222 222222 2 1333 334542 2345678888886322 1 1235555668
Q ss_pred CCEEEEEec
Q 024606 115 TDFLVLARY 123 (265)
Q Consensus 115 ~D~vv~ag~ 123 (265)
+|+||.+--
T Consensus 239 aDvVi~at~ 247 (311)
T cd05213 239 ADVVISATG 247 (311)
T ss_pred CCEEEECCC
Confidence 999998753
No 227
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.35 E-value=2.4e+02 Score=25.38 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=43.1
Q ss_pred EEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-CCCEEE
Q 024606 43 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 119 (265)
Q Consensus 43 v~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-~~D~vv 119 (265)
.+|.|.-.+.+..-+++..| ++ .+||.. .+..+.++|+++|||+.. -- ....|+.+.++ .+|++=
T Consensus 72 ~vGaGTVl~~e~a~~a~~aG---A~--FiVsP~---~~~~v~~~~~~~~i~~iP--G~--~TpsEi~~A~~~Ga~~vK 137 (222)
T PRK07114 72 ILGVGSIVDAATAALYIQLG---AN--FIVTPL---FNPDIAKVCNRRKVPYSP--GC--GSLSEIGYAEELGCEIVK 137 (222)
T ss_pred EEeeEeCcCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEeC--CC--CCHHHHHHHHHCCCCEEE
Confidence 46666655666665666555 44 367755 456799999999999863 21 12346777777 889874
No 228
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=30.06 E-value=4.1e+02 Score=25.69 Aligned_cols=60 Identities=5% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCceEEEEEeCCchhHHHHHHHHHc-CCCCceEEEEeeCCCCCC----C-------cHHHHHHHHcCCCEEEEC
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGP----N-------SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~~-~~l~~~I~~Vit~~~~~~----~-------~~v~~~a~~~gIP~~~~~ 98 (265)
...|++++|+|+ ..+.+++.+.+ +..+.++++++.+.+... + ..+.+.+++++|....+.
T Consensus 124 ~~~rvLIvGag~--~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa 195 (445)
T TIGR03025 124 NLRRVLIVGTGE--AARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIA 195 (445)
T ss_pred CCCcEEEEECCH--HHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEe
Confidence 346788888766 44556666543 344689999987542211 0 124455666666654443
No 229
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=29.80 E-value=94 Score=29.59 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=34.2
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCC--------C---CcHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG--------P---NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~--------~---~~~v~~~a~~~gIP~~~~~ 98 (265)
||++..||+- +.+..++.. . ..++.+|..+.-.. . ...+.++|+++|||.+.++
T Consensus 1 kVlValSGGvDSsvla~lL~~--~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd 67 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE--Q---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVN 67 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 6889999873 344444433 2 35777776543210 0 1347889999999998775
No 230
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.75 E-value=2.9e+02 Score=27.59 Aligned_cols=82 Identities=7% Similarity=0.195 Sum_probs=43.4
Q ss_pred CCceEEEEEeC-Cc-hhH-HHHHHHHHcCCCCceEEEEeeCCCCC-CCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHh
Q 024606 37 PKYKVAVLASK-QE-HCL-VDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 37 ~~~rIav~~Sg-~g-~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~-~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
++.+|+++|-+ .| |.+ ..|...+... ...+..+-++.-+. .-..+..+|+..|+|+..... .+++.+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d-----~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD-----EAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCC-----HHHHHHHH
Confidence 34677777763 34 333 3333333211 23454333333221 113467788899999986432 23344443
Q ss_pred ---h---CCCEEEEEecCC
Q 024606 113 ---Q---NTDFLVLARYMQ 125 (265)
Q Consensus 113 ---~---~~D~vv~ag~~~ 125 (265)
+ +.|+|++-.-++
T Consensus 313 ~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHhccCCCEEEEeCccc
Confidence 2 479999877666
No 231
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=29.63 E-value=37 Score=31.27 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=40.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEE
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 95 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~ 95 (265)
.+|=|.+||...+.+.+.+++..++-.+-.++=|-+.....-..++++..++|||+.
T Consensus 198 v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL~~~gi~VR 254 (256)
T COG0107 198 VNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYLAEQGIEVR 254 (256)
T ss_pred CCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHHHHcCCCcc
Confidence 467789999878899999998877655545444444432223568899999999975
No 232
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=29.62 E-value=1.9e+02 Score=28.71 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=43.2
Q ss_pred CCceEEEEEeCCchh--HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhC
Q 024606 37 PKYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 114 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~--l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~ 114 (265)
...|+.|+|.|.-.. .+.|... | . .+| .|+|+ .-....++|+++|.-+.. -+++.+.+.+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~---g-~-~~i--~IaNR---T~erA~~La~~~~~~~~~--------l~el~~~l~~ 238 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK---G-V-KKI--TIANR---TLERAEELAKKLGAEAVA--------LEELLEALAE 238 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC---C-C-CEE--EEEcC---CHHHHHHHHHHhCCeeec--------HHHHHHhhhh
Confidence 457899999886322 3333332 2 1 344 56777 345678889999944332 2456777779
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|+||++-
T Consensus 239 ~DvVissT 246 (414)
T COG0373 239 ADVVISST 246 (414)
T ss_pred CCEEEEec
Confidence 99999884
No 233
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=29.62 E-value=94 Score=24.84 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=23.9
Q ss_pred ceEEEEEeCCchhH--HHHHHHHHcCCCCceEEEEeeCC
Q 024606 39 YKVAVLASKQEHCL--VDFLYGWQEGKLPVEITCVISNH 75 (265)
Q Consensus 39 ~rIav~~Sg~g~~l--~~ll~~~~~~~l~~~I~~Vit~~ 75 (265)
|||++.+||+.... ..+++.+.+. ..+|..|+|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc
Confidence 68999999987654 4666766543 47888888854
No 234
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.59 E-value=3.2e+02 Score=23.95 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=31.7
Q ss_pred ceEEEEeeCCCCCCC-cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEe
Q 024606 66 VEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 122 (265)
Q Consensus 66 ~~I~~Vit~~~~~~~-~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag 122 (265)
.++..++|..-+.++ ....+.|++.|+|+..+....+. .+.+.+..+|+.+...
T Consensus 110 gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s---~l~~l~~~~D~~i~ip 164 (196)
T PRK10886 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG---ELAGLLGPQDVEIRIP 164 (196)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC---hhhhccccCCEEEEcC
Confidence 356666666522211 34678899999999877643222 2443333478877544
No 235
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=29.49 E-value=78 Score=31.99 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=27.3
Q ss_pred HHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEecCC
Q 024606 83 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ 125 (265)
Q Consensus 83 v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag~~~ 125 (265)
+.+.|++.||+...+.+. +|+.++| +||-+++.||+.
T Consensus 550 iselaRe~giTlivvThr-----pEv~~AL-~PD~li~vgYg~ 586 (593)
T COG2401 550 ISELAREAGITLIVVTHR-----PEVGNAL-RPDTLILVGYGK 586 (593)
T ss_pred HHHHHHHhCCeEEEEecC-----HHHHhcc-CCceeEEeeccc
Confidence 567778888888776432 4666666 888888888875
No 236
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=29.33 E-value=1.7e+02 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.1
Q ss_pred eEEEEEeCC-chhHHHHHH
Q 024606 40 KVAVLASKQ-EHCLVDFLY 57 (265)
Q Consensus 40 rIav~~Sg~-g~~l~~ll~ 57 (265)
||+|+|+|. |+.+..++.
T Consensus 1 kI~VIGaG~wGtALA~~la 19 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA 19 (342)
T ss_pred CEEEECcCHHHHHHHHHHH
Confidence 699999998 667776664
No 237
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=29.21 E-value=5.4e+02 Score=25.03 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=64.9
Q ss_pred cHHHHHHHHcCCCEEEECCCCC------chHHHHHHHhhCCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCccccccc
Q 024606 81 SHVIRFLERHGIPYHYLCAKEN------EREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN 154 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~~~~------~~~~~l~~~l~~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~ 154 (265)
..+.+.++.+|..+..++.... ....++.++++++|+|++. +|.-+ ..+
T Consensus 164 ~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh-----~Plt~--------------------~T~ 218 (409)
T PRK11790 164 TQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLH-----VPETP--------------------STK 218 (409)
T ss_pred HHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEc-----CCCCh--------------------HHh
Confidence 3466667777777766653210 0112466677789999876 34221 244
Q ss_pred ccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHhCCC-EeEEEEEEecCccC----CCCeeEEEEEecCCC
Q 024606 155 MILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDAGVK-LIGATSHFVTEELD----AGPIIEQMVERVSHR 224 (265)
Q Consensus 155 ~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~G~~-~~GvTvH~v~~~~D----~G~II~Q~~~~I~~~ 224 (265)
+++..+.++..+.+.+=+--| ||. ..+..|+.+|.- ..|.-|+.-..-.. ..+.+....+-+.|.
T Consensus 219 ~li~~~~l~~mk~ga~lIN~a-----RG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPH 292 (409)
T PRK11790 219 NMIGAEELALMKPGAILINAS-----RGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292 (409)
T ss_pred hccCHHHHhcCCCCeEEEECC-----CCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCc
Confidence 589999999988764333222 664 456777888863 24444555443221 124555455555554
No 238
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=28.99 E-value=4.1e+02 Score=25.73 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCceEEEEEeCCc-hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCc-HHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-
Q 024606 37 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-HVIRFLERHGIPYHYLCAKENEREEELLELVQ- 113 (265)
Q Consensus 37 ~~~rIav~~Sg~g-~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~-~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~- 113 (265)
..+|++|.+...- ..+..+|.. +..+++.|++..+.+... ......+..+++...+.. .+..++.+.++
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e-----~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~d~~el~~~i~~ 369 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLE-----MGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFV---GDLWDLESLAKE 369 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHH-----cCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEEC---CCHHHHHHHhhc
Confidence 4578988863321 123333332 246788888865433211 111222334555433322 23456777776
Q ss_pred -CCCEEEEEecCC
Q 024606 114 -NTDFLVLARYMQ 125 (265)
Q Consensus 114 -~~D~vv~ag~~~ 125 (265)
++|+++-.++.+
T Consensus 370 ~~pdliig~~~~~ 382 (428)
T cd01965 370 EPVDLLIGNSHGR 382 (428)
T ss_pred cCCCEEEECchhH
Confidence 699998776554
No 239
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=28.90 E-value=1.9e+02 Score=22.88 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=32.8
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEECC
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~~ 99 (265)
||+|..||+. +.+..++...... . .++.+|..+..... ...+.++|++.|+|+..+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~-~-~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~ 63 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE-L-KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRP 63 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc-c-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECC
Confidence 4777778763 3344444332211 0 24555666553211 13478888999999987653
No 240
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.87 E-value=1.5e+02 Score=30.44 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=41.9
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--C
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 114 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~ 114 (265)
+.+|.++|.|. |..+...+.. . +.+++ +-++| ....+.+++.|.++++-+. .++++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~--g~~vv--vID~d----~~~v~~~~~~g~~v~~GDa----t~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA---N--KMRIT--VLERD----ISAVNLMRKYGYKVYYGDA----TQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh---C--CCCEE--EEECC----HHHHHHHHhCCCeEEEeeC----CCHHHHHhcCCcc
Confidence 47899999887 4444444433 2 24553 33332 2246677889999987542 2345555544 7
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|.+|++-
T Consensus 465 A~~vv~~~ 472 (601)
T PRK03659 465 AEAIVITC 472 (601)
T ss_pred CCEEEEEe
Confidence 88877654
No 241
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=28.49 E-value=1.8e+02 Score=26.25 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=33.1
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
++||+|+|.|. |..+...+.. .| +++. +.++. ... .+.+.+.|+.+. . +..+.++++|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~--~g---~~v~--~~d~~---~~~-~~~~~~~g~~~~--~--------~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLK--AG---YSLV--VYDRN---PEA-VAEVIAAGAETA--S--------TAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHH--CC---CeEE--EEcCC---HHH-HHHHHHCCCeec--C--------CHHHHHhcCC
Confidence 47999999987 5444332222 23 4553 33442 112 334455665322 1 1123345899
Q ss_pred EEEEEe
Q 024606 117 FLVLAR 122 (265)
Q Consensus 117 ~vv~ag 122 (265)
+|+++-
T Consensus 61 ~vi~~v 66 (296)
T PRK11559 61 VIITML 66 (296)
T ss_pred EEEEeC
Confidence 998874
No 242
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=28.24 E-value=1.4e+02 Score=24.82 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=33.4
Q ss_pred CCceEEEEEeCCchhHHHH------HHHHHc-C--CCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCC
Q 024606 37 PKYKVAVLASKQEHCLVDF------LYGWQE-G--KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~l------l~~~~~-~--~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~ 100 (265)
++.-++|.+|.+|+..+.+ .+.+++ + .....++ +||++ ++++.++|..++.+++.++..
T Consensus 72 ~~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~~----~s~l~~~a~~~~~~~~~~~~~ 139 (158)
T cd05015 72 PETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITDN----GSGLLKKAGIEGLNTFEIPDW 139 (158)
T ss_pred cccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcCC----ChHHHHHcCCCcceeeeCCCC
Confidence 3455778888888643221 121111 1 1234444 66764 345666688899998877643
No 243
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.13 E-value=1.9e+02 Score=29.86 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=42.1
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--C
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 114 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~ 114 (265)
..+|.|+|.|. |..+...|++ . +.+++ +-+.| ..-.+.+++.|.++++-+. .++++++... +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---~--g~~vv--vID~d----~~~v~~~~~~g~~v~~GDa----t~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS---S--GVKMT--VLDHD----PDHIETLRKFGMKVFYGDA----TRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh---C--CCCEE--EEECC----HHHHHHHHhcCCeEEEEeC----CCHHHHHhcCCCc
Confidence 47899999988 5555444443 2 23443 33332 2235667888999987553 2345555443 7
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|.+|++-
T Consensus 465 A~~vvv~~ 472 (621)
T PRK03562 465 AEVLINAI 472 (621)
T ss_pred CCEEEEEe
Confidence 88887664
No 244
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.91 E-value=1e+02 Score=28.62 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=35.0
Q ss_pred ceEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECC
Q 024606 39 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 39 ~rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~ 99 (265)
-.|+.++||+- .+.+.|.+...+|++ .+|++|-|+- .-.+++.++|||+...+.
T Consensus 43 g~ViGiGsGstv~~~v~~i~q~l~~~~l-~~vvgVPts~------~s~q~~~~~gi~l~~~d~ 98 (261)
T KOG3075|consen 43 GMVIGIGSGSTVVYAVDRIGQLLFDGDL-GNVVGVPTSF------RSAQLALEYGIPLSDLDS 98 (261)
T ss_pred CeEEEecCccHHHHHHHHHHHHhcCCCc-CceEecccch------hhHHHHHhcCCccccCCC
Confidence 34555565552 234555566666764 6777877754 127899999999987664
No 245
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=27.89 E-value=2.7e+02 Score=26.88 Aligned_cols=60 Identities=10% Similarity=0.003 Sum_probs=36.3
Q ss_pred ceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEECCCC-CchHH---HHHHHhh--CCCEEEEEecCC
Q 024606 66 VEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAKE-NEREE---ELLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 66 ~~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~~~~-~~~~~---~l~~~l~--~~D~vv~ag~~~ 125 (265)
.+.+.|++.+.-.. -..+.+..+++||.+..++.-. +...+ +..+..+ ++|.||-.|=+.
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS 117 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGS 117 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChH
Confidence 34566777642111 1346777889999987765221 22333 3444444 799999999765
No 246
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=27.88 E-value=2.1e+02 Score=25.84 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=52.4
Q ss_pred ceEEEEEeCC-chhHH-HHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 39 YKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~-~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
|||+|+|.|. |..+. .|.++ | ++|.++ . ++ ....+.+.+.|+-... .. +. +.++++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~---g---~~V~~~-d-~~----~~~~~~a~~~g~~~~~-~~-----~~---~~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL---G---HTVYGV-S-RR----ESTCERAIERGLVDEA-ST-----DL---SLLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC---C---CEEEEE-E-CC----HHHHHHHHHCCCcccc-cC-----CH---hHhcCCC
Confidence 5899999887 44333 33332 3 465433 2 21 1234556666642111 10 11 2345899
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhc---CCCeEEecCCC
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY---GKDVINIHHGL 176 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~---~~~~iNiHpsl 176 (265)
+||++- |++...-.-.+....+.++..++.-.+ ++..+++.. ..+++..||=.
T Consensus 60 lVilav-----p~~~~~~~~~~l~~~l~~~~ii~d~~S--vk~~~~~~~~~~~~~~v~~HPm~ 115 (279)
T PRK07417 60 LVILAL-----PIGLLLPPSEQLIPALPPEAIVTDVGS--VKAPIVEAWEKLHPRFVGSHPMA 115 (279)
T ss_pred EEEEcC-----CHHHHHHHHHHHHHhCCCCcEEEeCcc--hHHHHHHHHHHhhCCceeeCCcC
Confidence 999885 321111100122233455655554333 344445432 23588889833
No 247
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=27.83 E-value=3.7e+02 Score=22.64 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=36.6
Q ss_pred CceEEEEEe-CC-chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH----cCCCEEEECCCCCchHHHHHH
Q 024606 38 KYKVAVLAS-KQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLE 110 (265)
Q Consensus 38 ~~rIav~~S-g~-g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~~~~l~~ 110 (265)
.+|++++|. |. |..+ ..+.+ .| +++. ++ ++. ...+.+++++ .+..+..++. ...+++.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~---~g---~~V~-l~-~R~---~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~ 93 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR---EG---ARVV-LV-GRD---LERAQKAADSLRARFGEGVGAVET---SDDAARAA 93 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---CC---CEEE-EE-cCC---HHHHHHHHHHHHhhcCCcEEEeeC---CCHHHHHH
Confidence 478999985 43 2222 22222 23 4554 23 342 1233444443 3555544321 23355666
Q ss_pred HhhCCCEEEEEec
Q 024606 111 LVQNTDFLVLARY 123 (265)
Q Consensus 111 ~l~~~D~vv~ag~ 123 (265)
.++++|+||.++=
T Consensus 94 ~~~~~diVi~at~ 106 (194)
T cd01078 94 AIKGADVVFAAGA 106 (194)
T ss_pred HHhcCCEEEECCC
Confidence 7778999988763
No 248
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.78 E-value=96 Score=28.68 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=18.7
Q ss_pred CceEEEEEeCCc-hhH-HHHHHHHHcCCCCceEEEE
Q 024606 38 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCV 71 (265)
Q Consensus 38 ~~rIav~~Sg~g-~~l-~~ll~~~~~~~l~~~I~~V 71 (265)
+|||.|.+.|.| +-. ..+.+.+++...+.+++++
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAGLIRALKARAPNLEFVGV 36 (380)
T ss_pred CceEEEEecCcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 468888887765 322 2255666543223555544
No 249
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=27.60 E-value=2.1e+02 Score=26.94 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=32.2
Q ss_pred CceEEEEEeCC-chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
.+||+|+|.|. |+.+ ..|.+. | .++. +...+. ... .+.+++.|+.+. + ..+.++++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s---G---~~Vi-v~~~~~---~~~-~~~a~~~Gv~~~--s---------~~ea~~~A 60 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS---G---LNVI-VGLRKG---GAS-WKKATEDGFKVG--T---------VEEAIPQA 60 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC---C---CeEE-EEECcC---hhh-HHHHHHCCCEEC--C---------HHHHHhcC
Confidence 37899999987 4332 233322 3 3442 222321 112 344557777421 1 12345589
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+|+++-
T Consensus 61 DiVvLaV 67 (314)
T TIGR00465 61 DLIMNLL 67 (314)
T ss_pred CEEEEeC
Confidence 9998873
No 250
>PLN02712 arogenate dehydrogenase
Probab=27.60 E-value=1.6e+02 Score=30.88 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 35 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 35 ~~~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
...++||+|+|.|. |..+..-+.. .| ++|. ++ +++. . .+.+++.|+.. +.. +.+.+.
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~--~G---~~V~-~~-dr~~----~-~~~a~~~Gv~~--~~~--------~~el~~ 423 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVK--QG---HTVL-AY-SRSD----Y-SDEAQKLGVSY--FSD--------ADDLCE 423 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHH--Cc---CEEE-EE-ECCh----H-HHHHHHcCCeE--eCC--------HHHHHh
Confidence 34668999999887 4443322222 23 4664 33 3321 1 25567788632 211 122333
Q ss_pred -CCCEEEEEe
Q 024606 114 -NTDFLVLAR 122 (265)
Q Consensus 114 -~~D~vv~ag 122 (265)
++|+|+++-
T Consensus 424 ~~aDvVILav 433 (667)
T PLN02712 424 EHPEVILLCT 433 (667)
T ss_pred cCCCEEEECC
Confidence 589999874
No 251
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.54 E-value=1.8e+02 Score=29.12 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=41.3
Q ss_pred CCceEEEEEeCCc-h--hHHHHHHHHHcCCCCc-eEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEECCCCCchHHHH
Q 024606 37 PKYKVAVLASKQE-H--CLVDFLYGWQEGKLPV-EITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEEL 108 (265)
Q Consensus 37 ~~~rIav~~Sg~g-~--~l~~ll~~~~~~~l~~-~I~~Vit~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~l 108 (265)
+++||+|.|-|+- + .+.-+|. +..+++. +++.+ +-+... ..-+.++.++.|.|+...... ..
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~--~~e~l~~~el~L~--Did~~r~~~i~~~~~~~v~~~g~~~kv~~tt------d~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLA--RTEELPVRELALY--DIDEERLKIIAILAKKLVEEAGAPVKVEATT------DR 71 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHh--cCccCCcceEEEE--eCCHHHHHHHHHHHHHHHHhhCCCeEEEEec------CH
Confidence 4589999987763 2 2232332 2456654 55433 222111 123567788999996443221 12
Q ss_pred HHHhhCCCEEEEE
Q 024606 109 LELVQNTDFLVLA 121 (265)
Q Consensus 109 ~~~l~~~D~vv~a 121 (265)
.+.|.++|+|+..
T Consensus 72 ~eAl~gAdfVi~~ 84 (442)
T COG1486 72 REALEGADFVITQ 84 (442)
T ss_pred HHHhcCCCEEEEE
Confidence 3456688988764
No 252
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=27.38 E-value=3.6e+02 Score=22.37 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=45.0
Q ss_pred CCCceEEEEEeCCc-hhHHHHHHHHHcCCC-CceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEECCCCC-chHHHHHHH
Q 024606 36 DPKYKVAVLASKQE-HCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKEN-EREEELLEL 111 (265)
Q Consensus 36 ~~~~rIav~~Sg~g-~~l~~ll~~~~~~~l-~~~I~~Vit~~~~~~~~~v~~~a~~~-gIP~~~~~~~~~-~~~~~l~~~ 111 (265)
.++|+|++.++..- ..+.++......- | .++|. .|. ...++.+++ ||++..+-. +. .-.+++.+.
T Consensus 2 ~~~~~v~lsv~d~dK~~l~~~a~~l~~l-l~Gf~l~--AT~-------gTa~~L~~~~Gi~v~~vi~-~~~gg~~~i~~~ 70 (142)
T PRK05234 2 PARKRIALIAHDHKKDDLVAWVKAHKDL-LEQHELY--ATG-------TTGGLIQEATGLDVTRLLS-GPLGGDQQIGAL 70 (142)
T ss_pred CcCcEEEEEEeccchHHHHHHHHHHHHH-hcCCEEE--EeC-------hHHHHHHhccCCeeEEEEc-CCCCCchhHHHH
Confidence 45688888887653 3455555543321 0 35553 332 246788899 999866521 10 013668888
Q ss_pred hh--CCCEEEEEe
Q 024606 112 VQ--NTDFLVLAR 122 (265)
Q Consensus 112 l~--~~D~vv~ag 122 (265)
++ +.|+||...
T Consensus 71 I~~g~i~lVInt~ 83 (142)
T PRK05234 71 IAEGKIDMLIFFR 83 (142)
T ss_pred HHcCceeEEEEec
Confidence 87 689887643
No 253
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=27.36 E-value=2.9e+02 Score=26.42 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=15.7
Q ss_pred ChhHHhh-cCCCeEEecCCCCCCCCC
Q 024606 158 SGKFLRS-YGKDVINIHHGLLPSFKG 182 (265)
Q Consensus 158 ~~~il~~-~~~~~iNiHpslLP~yRG 182 (265)
-...++. .+...+-+||+ |-.||
T Consensus 254 ~~~~~~~~~k~~~ivmHP~--PvnR~ 277 (316)
T COG0540 254 YGLTLERLAKPDAIVMHPL--PVNRV 277 (316)
T ss_pred HHHHHHhhcCCCcEEECCC--CccCC
Confidence 3455666 77889999997 44444
No 254
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.33 E-value=1.1e+02 Score=28.78 Aligned_cols=40 Identities=28% Similarity=0.552 Sum_probs=26.7
Q ss_pred HHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEEEec
Q 024606 84 IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARY 123 (265)
Q Consensus 84 ~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ag~ 123 (265)
++.-++.|||++-+.-.+....+.+.++|+ +||++|+-|-
T Consensus 121 l~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 121 LKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCc
Confidence 344478899986443223233456777777 8999999884
No 255
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=27.23 E-value=5.4e+02 Score=25.46 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred CCCCceEEEEEeCCc-----hhHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEECCCC-CchH
Q 024606 35 IDPKYKVAVLASKQE-----HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAKE-NERE 105 (265)
Q Consensus 35 ~~~~~rIav~~Sg~g-----~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~~~~-~~~~ 105 (265)
..++|-++++.+.+- .++...-+.+++ +.+.=+++||++.-.. -..+.+..++.||++.+++... +...
T Consensus 36 q~k~~~~af~m~~s~~rfG~gv~~Evg~dikn--~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv 113 (465)
T KOG3857|consen 36 QIKMMSVAFFMIPSTSRFGKGVLAEVGDDIKN--LGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTV 113 (465)
T ss_pred ccccceeeEEeccchhhhcchhHHHHHHHHHh--cCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCch
Confidence 336778888876542 255555555543 3577788999873211 1225667789999999887431 1112
Q ss_pred ---HHHHHHhh--CCCEEEEEecCC
Q 024606 106 ---EELLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 106 ---~~l~~~l~--~~D~vv~ag~~~ 125 (265)
.+-++..+ ++|..|..|-+.
T Consensus 114 ~s~~~alefak~~~fDs~vaiGGGS 138 (465)
T KOG3857|consen 114 GSVTAALEFAKKKNFDSFVAIGGGS 138 (465)
T ss_pred hhHHHHHHHHHhcccceEEEEcCcc
Confidence 23344444 799999998765
No 256
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.23 E-value=1.2e+02 Score=28.50 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
+++||+|+|.|. |+.+.-.+- .+.+..|++.+=.+.+. ....+.++. +..|+.... + .....-.+.++++
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~---~~~~~~el~LiD~~~~~-~~g~a~Dl~--~~~~~~~~~-~--v~~~~dy~~~~~a 72 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISIL---AKGLADELVLVDVVEDK-LKGEAMDLQ--HGSAFLKNP-K--IEADKDYSVTANS 72 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCCCEEEEEeCCccH-HHHHHHHHH--HhhccCCCC-E--EEECCCHHHhCCC
Confidence 468999999876 544332222 23455677544222211 112223322 333332100 0 0100012336699
Q ss_pred CEEEE-EecCCC
Q 024606 116 DFLVL-ARYMQP 126 (265)
Q Consensus 116 D~vv~-ag~~~~ 126 (265)
|+||+ +|-.++
T Consensus 73 divvitaG~~~k 84 (312)
T cd05293 73 KVVIVTAGARQN 84 (312)
T ss_pred CEEEECCCCCCC
Confidence 99987 776654
No 257
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=26.82 E-value=1.1e+02 Score=29.74 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=37.8
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
+..+|+|+|.|. |..+...+.. .| ..+| +++++. .....++|+++|..+.. .+++.+.+.++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~--~G--~~~V--~v~~r~---~~ra~~la~~~g~~~~~--------~~~~~~~l~~a 243 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAE--KG--VRKI--TVANRT---LERAEELAEEFGGEAIP--------LDELPEALAEA 243 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHH--CC--CCeE--EEEeCC---HHHHHHHHHHcCCcEee--------HHHHHHHhccC
Confidence 447899998876 3332222222 23 1234 344542 23456688888764321 12344556689
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+||.+.
T Consensus 244 DvVI~aT 250 (423)
T PRK00045 244 DIVISST 250 (423)
T ss_pred CEEEECC
Confidence 9999875
No 258
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.74 E-value=1.5e+02 Score=23.11 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHc-CCCCceEEEEeeCCCCC------C-CcHHHHHHHHcCCCEEE
Q 024606 53 VDFLYGWQE-GKLPVEITCVISNHDRG------P-NSHVIRFLERHGIPYHY 96 (265)
Q Consensus 53 ~~ll~~~~~-~~l~~~I~~Vit~~~~~------~-~~~v~~~a~~~gIP~~~ 96 (265)
..+++.+.+ | +|..||..++.. . +..+.+.|.++|||+..
T Consensus 57 ~~i~~~i~~~g----~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 57 PTVDAAIAEKG----KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred cHHHHHHhCCC----CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 345566665 5 455565543211 1 24578889999999985
No 259
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.49 E-value=1.3e+02 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEe
Q 024606 83 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 122 (265)
Q Consensus 83 v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag 122 (265)
+.+.|+++|+++..... ...++.+.+.+.|++++.-
T Consensus 20 m~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~P 55 (99)
T cd05565 20 LNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILAP 55 (99)
T ss_pred HHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEcC
Confidence 67888999999865432 2334555555889887653
No 260
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=26.49 E-value=3e+02 Score=25.63 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=41.5
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCC---cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~---~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-- 113 (265)
.|=.++.+|.. .+..++++++ +.++ ||. +|-.+. ..+-.+|+++|||++.+..+ ++|=.++.
T Consensus 128 kkp~~LvsG~n----~VtkaIekkK--AkLV-IIA-~DVsPie~vk~LpaLCrk~~VPY~iVktK-----aeLG~AIGkK 194 (263)
T PTZ00222 128 KAPLAVVTGLQ----EVTRAIEKKQ--ARMV-VIA-NNVDPVELVLWMPNLCRANKIPYAIVKDM-----ARLGDAIGRK 194 (263)
T ss_pred CCCCeeccCHH----HHHHHHHcCC--ceEE-EEe-CCCCHHHHHHHHHHHHHhcCCCEEEECCH-----HHHHHHHCCC
Confidence 34445556653 3444455553 4543 333 332222 23678999999999987643 45666665
Q ss_pred CCCEEEEEecC
Q 024606 114 NTDFLVLARYM 124 (265)
Q Consensus 114 ~~D~vv~ag~~ 124 (265)
.+-.+.+...+
T Consensus 195 travVAItD~g 205 (263)
T PTZ00222 195 TATCVAITDVN 205 (263)
T ss_pred CCeEEEEeeCC
Confidence 35566555544
No 261
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.49 E-value=2.2e+02 Score=26.29 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=13.7
Q ss_pred CceEEEEEeCC-chhHHHHH
Q 024606 38 KYKVAVLASKQ-EHCLVDFL 56 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll 56 (265)
+|||+|+|.|. |+.+...+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L 23 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLA 23 (328)
T ss_pred CCeEEEECcCHHHHHHHHHH
Confidence 57999999988 55554443
No 262
>PRK11914 diacylglycerol kinase; Reviewed
Probab=26.47 E-value=2.2e+02 Score=26.02 Aligned_cols=8 Identities=50% Similarity=0.505 Sum_probs=5.4
Q ss_pred ceEEEEEe
Q 024606 39 YKVAVLAS 46 (265)
Q Consensus 39 ~rIav~~S 46 (265)
+|+.++.-
T Consensus 9 ~~~~iI~N 16 (306)
T PRK11914 9 GKVTVLTN 16 (306)
T ss_pred ceEEEEEC
Confidence 67777665
No 263
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.45 E-value=1.1e+02 Score=30.25 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=30.7
Q ss_pred eEEEEeeCCCCCCC--------cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEEEecCCCCc
Q 024606 67 EITCVISNHDRGPN--------SHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVP 128 (265)
Q Consensus 67 ~I~~Vit~~~~~~~--------~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ag~~~~ip 128 (265)
.++.||-|+.++-+ -.+++.|+++||++.. +|++..+- +.-++=++.|.-++|
T Consensus 200 T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa---------DEVY~~~vfg~~pfvpmg~fssiVP 262 (447)
T KOG0259|consen 200 TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA---------DEVYGHTVFGDKPFVPMGKFSSIVP 262 (447)
T ss_pred eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe---------hhhcceeecCCCCccchhhccccCc
Confidence 45556666644422 2378899999999873 24444432 334444555555555
No 264
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=26.29 E-value=1.9e+02 Score=26.61 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=34.3
Q ss_pred ceEEEEEeCC-chhHH-HHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 39 YKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~-~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
|||+|+|.|. |+.+. .|.+. | ++|. + .+++ ...+.+ +.+.|+... . ..+++.+.+.++|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~---g---~~V~-~-~dr~---~~~~~~-l~~~g~~~~--~-----s~~~~~~~~~~~d 61 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR---G---HDCV-G-YDHD---QDAVKA-MKEDRTTGV--A-----NLRELSQRLSAPR 61 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC---C---CEEE-E-EECC---HHHHHH-HHHcCCccc--C-----CHHHHHhhcCCCC
Confidence 5899999987 55554 33332 3 5664 2 3442 223333 344554332 1 1234555555789
Q ss_pred EEEEE
Q 024606 117 FLVLA 121 (265)
Q Consensus 117 ~vv~a 121 (265)
+|+++
T Consensus 62 vIi~~ 66 (298)
T TIGR00872 62 VVWVM 66 (298)
T ss_pred EEEEE
Confidence 99876
No 265
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=26.28 E-value=59 Score=25.00 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEeeCCCCCCCcHHHHHHHHcCCCEEEECC
Q 024606 68 ITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 68 I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~ 99 (265)
+.++|-.....+...+.+.|+++|||+...+.
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHHT-EEEE-SS
T ss_pred CCEEEEeCCCCCCHHHHHHHHHCCCEEEEECC
Confidence 55554433344567899999999999987653
No 266
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=26.20 E-value=2.6e+02 Score=26.22 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHcCCCCceEEEEeeC-CCCCCC-cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEE
Q 024606 50 HCLVDFLYGWQEGKLPVEITCVISN-HDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 120 (265)
Q Consensus 50 ~~l~~ll~~~~~~~l~~~I~~Vit~-~~~~~~-~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ 120 (265)
+.+..|..+.++|+ +.++ +++. ++...+ .-......++|||+..+.. ..+...++ ++|.|++
T Consensus 138 tv~~~l~~A~~~g~-~~~V--~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~D------sa~~~~m~~~~vd~Vlv 203 (303)
T TIGR00524 138 TALGVIRSAWEDGK-RIRV--IACETRPRNQGSRLTAWELMQDGIDVTLITD------SMAAYFMQKGEIDAVIV 203 (303)
T ss_pred hHHHHHHHHHHcCC-ceEE--EECCCCCccchHHHHHHHHHHCCCCEEEECh------hHHHHHccccCCCEEEE
Confidence 34455556666664 3444 4442 222222 2235566778999998753 24555666 7888865
No 267
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=26.00 E-value=2.4e+02 Score=25.46 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=25.9
Q ss_pred ceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEe
Q 024606 66 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 122 (265)
Q Consensus 66 ~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag 122 (265)
.++ .|+|+++ .+.++.+|+... +.. .-.++.+.+.++|++|+.|
T Consensus 29 ~~~-~v~s~~p-------~~~~~~~~v~~~--~r~---~~~~~~~~l~~~D~vI~gG 72 (298)
T TIGR03609 29 VEP-TVLSNDP-------AETAKLYGVEAV--NRR---SLLAVLRALRRADVVIWGG 72 (298)
T ss_pred CeE-EEecCCh-------HHHHhhcCceEE--ccC---CHHHHHHHHHHCCEEEECC
Confidence 454 4666542 455677888654 221 1235666666889887665
No 268
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=25.93 E-value=2.8e+02 Score=24.90 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 34 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 34 ~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
..+.+.++++.|-|+- -++|+..--..+-...|++++--.++ .+-. +-.++|++.++ ++.+.++
T Consensus 80 g~~~~tnviiVG~Gnl--G~All~Y~f~~~~~~~iv~~FDv~~~----~VG~--~~~~v~V~~~d--------~le~~v~ 143 (211)
T COG2344 80 GQDKTTNVIIVGVGNL--GRALLNYNFSKKNGMKIVAAFDVDPD----KVGT--KIGDVPVYDLD--------DLEKFVK 143 (211)
T ss_pred CCCcceeEEEEccChH--HHHHhcCcchhhcCceEEEEecCCHH----HhCc--ccCCeeeechH--------HHHHHHH
Confidence 4667789999987761 24555432122224788887754321 1111 12247776432 4555665
Q ss_pred --CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCC
Q 024606 114 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL 177 (265)
Q Consensus 114 --~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslL 177 (265)
+.|+.+++- | ...|| -+-+.+.+.-=.|++|+-|.-|
T Consensus 144 ~~dv~iaiLtV-----P-a~~AQ---------------------~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 144 KNDVEIAILTV-----P-AEHAQ---------------------EVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred hcCccEEEEEc-----c-HHHHH---------------------HHHHHHHHcCCceEEeccceEe
Confidence 678777653 2 22344 3334455555568999998854
No 269
>PRK06141 ornithine cyclodeaminase; Validated
Probab=25.92 E-value=4.3e+02 Score=24.56 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=37.5
Q ss_pred CceEEEEEeCCch--hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHH---cCCCEEEECCCCCchHHHHHHHh
Q 024606 38 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER---HGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 38 ~~rIav~~Sg~g~--~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~---~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
..||+|+|+|.-. .+.+++.. .+ ..+| .|.++. .....++|++ .|+++..+. +..+.+
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~--~~--~~~V--~V~~Rs---~~~a~~~a~~~~~~g~~~~~~~--------~~~~av 187 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASV--RP--IKQV--RVWGRD---PAKAEALAAELRAQGFDAEVVT--------DLEAAV 187 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhc--CC--CCEE--EEEcCC---HHHHHHHHHHHHhcCCceEEeC--------CHHHHH
Confidence 4789999998622 23333332 12 1344 344552 2334555555 365554432 123445
Q ss_pred hCCCEEEEEecCC
Q 024606 113 QNTDFLVLARYMQ 125 (265)
Q Consensus 113 ~~~D~vv~ag~~~ 125 (265)
+++|+|+.+.-..
T Consensus 188 ~~aDIVi~aT~s~ 200 (314)
T PRK06141 188 RQADIISCATLST 200 (314)
T ss_pred hcCCEEEEeeCCC
Confidence 6899998876543
No 270
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=25.85 E-value=1.3e+02 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=33.4
Q ss_pred cHHHHHHHHcCCCEEEEC-CCC---------------CchHHHHHHHhhCCCEEEEEecC
Q 024606 81 SHVIRFLERHGIPYHYLC-AKE---------------NEREEELLELVQNTDFLVLARYM 124 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~-~~~---------------~~~~~~l~~~l~~~D~vv~ag~~ 124 (265)
..+.+++.+-++|++..+ .|. ...++++.+.++.+|+|+.+|-.
T Consensus 227 ~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ 286 (557)
T COG3961 227 KELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVL 286 (557)
T ss_pred HHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceE
Confidence 457889999999999877 221 11257888888899999999954
No 271
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.77 E-value=2.9e+02 Score=24.50 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=43.0
Q ss_pred EEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-CCCEEE
Q 024606 42 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 119 (265)
Q Consensus 42 av~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-~~D~vv 119 (265)
+.+|.|.-.+.+..-+++..| ++. ++|.. .+..+.++|+++|+|+.. -- ....|+...++ .+|++=
T Consensus 60 ~~vGAGTVl~~~~a~~a~~aG---A~F--ivsP~---~~~~v~~~~~~~~i~~iP--G~--~TptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 60 ALIGAGTVLNPEQLRQAVDAG---AQF--IVSPG---LTPELAKHAQDHGIPIIP--GV--ATPSEIMLALELGITALK 126 (204)
T ss_pred CEEEEEeCCCHHHHHHHHHcC---CCE--EECCC---CCHHHHHHHHHcCCcEEC--CC--CCHHHHHHHHHCCCCEEE
Confidence 345656555566655555555 443 57765 466799999999999874 21 22346777776 889884
No 272
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.71 E-value=1.4e+02 Score=25.13 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=60.7
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
.++|+|+|.|. |..+..+++++ ..+|. +.++.. .-...+...++.+ . ++.+++.++|
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-----G~~V~--~~d~~~----~~~~~~~~~~~~~---~--------~l~ell~~aD 93 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-----GMRVI--GYDRSP----KPEEGADEFGVEY---V--------SLDELLAQAD 93 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-----T-EEE--EEESSC----HHHHHHHHTTEEE---S--------SHHHHHHH-S
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-----CceeE--EecccC----Chhhhccccccee---e--------ehhhhcchhh
Confidence 47899999887 55555666654 35654 233311 1111244445421 1 2445666899
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCCCCCCCCCC----cHHHHHHHh
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQAFDA 192 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHpslLP~yRG~----~pi~~ai~~ 192 (265)
+|++.- | ++-..+++|..+.++..+.+.+=+.-| ||. ..+..|+.+
T Consensus 94 iv~~~~-----p--------------------lt~~T~~li~~~~l~~mk~ga~lvN~a-----RG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 94 IVSLHL-----P--------------------LTPETRGLINAEFLAKMKPGAVLVNVA-----RGELVDEDALLDALES 143 (178)
T ss_dssp EEEE-S-----S--------------------SSTTTTTSBSHHHHHTSTTTEEEEESS-----SGGGB-HHHHHHHHHT
T ss_pred hhhhhh-----c--------------------cccccceeeeeeeeeccccceEEEecc-----chhhhhhhHHHHHHhh
Confidence 998763 2 122345699999999999886555554 674 346667777
Q ss_pred CC
Q 024606 193 GV 194 (265)
Q Consensus 193 G~ 194 (265)
|.
T Consensus 144 g~ 145 (178)
T PF02826_consen 144 GK 145 (178)
T ss_dssp TS
T ss_pred cc
Confidence 75
No 273
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=25.62 E-value=4.9e+02 Score=25.51 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=33.0
Q ss_pred EEEEeCCch-hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC--CchHHHHHHHhh
Q 024606 42 AVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--NEREEELLELVQ 113 (265)
Q Consensus 42 av~~Sg~g~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~--~~~~~~l~~~l~ 113 (265)
+++.+|+|+ .+++-+..+..+ .-++ .|+.|-. .+....++|+++|.++..+.... ...-+++.+.|.
T Consensus 58 ~~ll~gsGt~amEAav~sl~~p--gdkV-Lv~~nG~--FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~ 127 (383)
T COG0075 58 VVLLSGSGTLAMEAAVASLVEP--GDKV-LVVVNGK--FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD 127 (383)
T ss_pred EEEEcCCcHHHHHHHHHhccCC--CCeE-EEEeCCh--HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 344455554 355554443322 1233 3444321 34456777788888877665321 122345555555
No 274
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=25.59 E-value=77 Score=25.58 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh----CCCEEEEEecCC
Q 024606 52 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLARYMQ 125 (265)
Q Consensus 52 l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~----~~D~vv~ag~~~ 125 (265)
.+.|.+++..| .|...|+...-.+-+..+...|++.|||+..++. .+.+.+. .++.+=+|.-.+
T Consensus 37 ~EPL~~~i~AG---vefieVYg~~~~p~~~~ll~~c~~r~Ipvrlv~~-------~v~N~lFk~erK~k~fGiArvPr 104 (115)
T PF04705_consen 37 PEPLTHSIRAG---VEFIEVYGSDGSPVPPELLAACRQRGIPVRLVDS-------AVVNQLFKGERKPKVFGIARVPR 104 (115)
T ss_dssp HHHHHHHHCTT----EEEEEEEETTS---CCCCHHHHCTT--EEEE-H-------HHHCCCS-SSS--SEEEEEE---
T ss_pred chHHHHHHhcC---cEEEEEeeecCCCCChHHHHHHHhcCCceEEecH-------HHHHHHHhcccccceeeeecCCC
Confidence 46677777666 6888887755433456689999999999987752 3444442 588777776443
No 275
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=25.59 E-value=2.7e+02 Score=24.13 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.1
Q ss_pred HhhCCCEEEEEe
Q 024606 111 LVQNTDFLVLAR 122 (265)
Q Consensus 111 ~l~~~D~vv~ag 122 (265)
.++++|+|+++-
T Consensus 65 a~~~aDvVilav 76 (219)
T TIGR01915 65 AAKRADVVILAV 76 (219)
T ss_pred HHhcCCEEEEEC
Confidence 355899998875
No 276
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=25.41 E-value=66 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.4
Q ss_pred cHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEE
Q 024606 81 SHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 118 (265)
Q Consensus 81 ~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~v 118 (265)
..+.+.|++||||+.. ++.+.+.|.+.|+-
T Consensus 35 e~II~~Ake~~Vpi~e--------dp~Lv~~L~~lelg 64 (92)
T COG2257 35 EKIIEKAKEHGVPIQE--------DPLLVELLLKLELG 64 (92)
T ss_pred HHHHHHHHHcCCCccc--------CHHHHHHHHhcccc
Confidence 4478899999999874 24677777655553
No 277
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=25.38 E-value=3.4e+02 Score=24.82 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=34.8
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCE
Q 024606 39 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 117 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~ 117 (265)
+||+|+|.|. |..+...+.. .| ...+|. ++ ++. ..-.+.+++.|+...... ...+.+.++|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~--~g-~~~~V~-~~-dr~----~~~~~~a~~~g~~~~~~~--------~~~~~~~~aDv 69 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR--LG-LAGEIV-GA-DRS----AETRARARELGLGDRVTT--------SAAEAVKGADL 69 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cC-CCcEEE-EE-ECC----HHHHHHHHhCCCCceecC--------CHHHHhcCCCE
Confidence 6899999887 4433322222 13 123443 33 331 122556677776433211 11233458999
Q ss_pred EEEEe
Q 024606 118 LVLAR 122 (265)
Q Consensus 118 vv~ag 122 (265)
||++-
T Consensus 70 Viiav 74 (307)
T PRK07502 70 VILCV 74 (307)
T ss_pred EEECC
Confidence 99886
No 278
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=25.29 E-value=2.3e+02 Score=26.43 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=45.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHc-CCCEEEEC-CCCCchHHHHHHHhh---
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLC-AKENEREEELLELVQ--- 113 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~-gIP~~~~~-~~~~~~~~~l~~~l~--- 113 (265)
+||.|+|-|.|+.++.+++. +. ..+++.|=- +..+.++|+++ .++..... .+.+...++-.+.++
T Consensus 78 k~VLiiGgGdG~tlRevlkh---~~-ve~i~~VEI------D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKH---LP-VERITMVEI------DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhc---CC-cceEEEEEc------CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 69999999999999999876 21 134443322 34689999886 34432111 111112223334443
Q ss_pred -CCCEEEEEecCC
Q 024606 114 -NTDFLVLARYMQ 125 (265)
Q Consensus 114 -~~D~vv~ag~~~ 125 (265)
..|+|++-.+--
T Consensus 148 ~~fDvIi~D~tdp 160 (282)
T COG0421 148 EKFDVIIVDSTDP 160 (282)
T ss_pred CcCCEEEEcCCCC
Confidence 489999877653
No 279
>PRK06270 homoserine dehydrogenase; Provisional
Probab=25.17 E-value=2.7e+02 Score=26.30 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=40.7
Q ss_pred CceEEEEEeCC-chhHHHHHHHHH-----cCCCCceEEEEeeCCC-----CC-CCcHHHHHHHHcCCCEEEECCCCCchH
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQ-----EGKLPVEITCVISNHD-----RG-PNSHVIRFLERHGIPYHYLCAKENERE 105 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~-----~~~l~~~I~~Vit~~~-----~~-~~~~v~~~a~~~gIP~~~~~~~~~~~~ 105 (265)
++||+++|.|. |..+..++.... .-.++.+|++|+..+. +. ....+.++++++|....+ +... ..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~-~~~~--~~ 78 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADY-PEGG--GE 78 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccC-cccc--cc
Confidence 47999999876 544444443211 1122478888775321 11 112345566666643221 1000 00
Q ss_pred HHHHHHhh--CCCEEEEEec
Q 024606 106 EELLELVQ--NTDFLVLARY 123 (265)
Q Consensus 106 ~~l~~~l~--~~D~vv~ag~ 123 (265)
..+.+.+. ++|+||.+-.
T Consensus 79 ~d~~ell~~~~~DvVvd~T~ 98 (341)
T PRK06270 79 ISGLEVIRSVDADVVVEATP 98 (341)
T ss_pred CCHHHHhhccCCCEEEECCc
Confidence 12334444 6899887654
No 280
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.04 E-value=3e+02 Score=24.36 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=43.4
Q ss_pred EEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-CCCEEE
Q 024606 42 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 119 (265)
Q Consensus 42 av~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-~~D~vv 119 (265)
+.+|.|.-.+.+.+-+++..| ++ .++|.. -+..+.++|+++|+|+.. -- ..-.|+...++ .+|+|=
T Consensus 56 ~~vGAGTVl~~e~a~~ai~aG---A~--FivSP~---~~~~vi~~a~~~~i~~iP--G~--~TptEi~~A~~~Ga~~vK 122 (201)
T PRK06015 56 AIVGAGTILNAKQFEDAAKAG---SR--FIVSPG---TTQELLAAANDSDVPLLP--GA--ATPSEVMALREEGYTVLK 122 (201)
T ss_pred CEEeeEeCcCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEeC--CC--CCHHHHHHHHHCCCCEEE
Confidence 345556555666666666555 34 367755 466799999999999863 21 12346777777 889874
No 281
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=24.89 E-value=5.6e+02 Score=24.17 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=36.0
Q ss_pred CceEEEEEeCCc-hhHHHHHHHHHcCCCCceEEEEeeCCCCCCC---cHHHHHHHHc-CCCEEE
Q 024606 38 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERH-GIPYHY 96 (265)
Q Consensus 38 ~~rIav~~Sg~g-~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~---~~v~~~a~~~-gIP~~~ 96 (265)
..++++++.|.| +.+..+++.+.+..-+.+|..+.+.+....- ..+.++++++ ++-+..
T Consensus 261 ~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~ 324 (399)
T PRK13289 261 DTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARNGGVHAFRDEVEALAARHPNLKAHT 324 (399)
T ss_pred CCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCChhhchHHHHHHHHHHhCCCcEEEE
Confidence 467888888887 4677777776433334578878887643211 2355666665 555443
No 282
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=24.66 E-value=2.3e+02 Score=27.94 Aligned_cols=127 Identities=15% Similarity=0.229 Sum_probs=64.8
Q ss_pred hHhhhccccccccCCCCCCceEEEEEeCC-chhH-HHHHHHHHcCCCCceEEEEee-CCCCCCCcHHHHHHHHcCCCEEE
Q 024606 20 SKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIPYHY 96 (265)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~rIav~~Sg~-g~~l-~~ll~~~~~~~l~~~I~~Vit-~~~~~~~~~v~~~a~~~gIP~~~ 96 (265)
++-|..|.+....-...++.+|||+|-|+ |-.+ +.++++ |. . |+| ++. + -...|+++|.-.+.
T Consensus 34 ~~i~d~~~~~~s~~~~k~tl~IaIIGfGnmGqflAetli~a---Gh---~---li~hsRs---d--yssaa~~yg~~~ft 99 (480)
T KOG2380|consen 34 AQIFDYMVSEDSIEQWKATLVIAIIGFGNMGQFLAETLIDA---GH---G---LICHSRS---D--YSSAAEKYGSAKFT 99 (480)
T ss_pred hhhhhcccCcchhhhcccceEEEEEecCcHHHHHHHHHHhc---Cc---e---eEecCcc---h--hHHHHHHhcccccc
Confidence 44466665444444456679999999987 4333 334444 42 2 344 332 2 35667777776654
Q ss_pred ECCCCCchHHHHHHHhh-CCCEEEEEecCCCCcchhhhhhhhhhhhhhccc-Cccc-ccccc----cCChhHHhhc---C
Q 024606 97 LCAKENEREEELLELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSK-GSLT-SYFNM----ILSGKFLRSY---G 166 (265)
Q Consensus 97 ~~~~~~~~~~~l~~~l~-~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~-~~~s-~y~~~----il~~~il~~~---~ 166 (265)
.. -++.. ++|+|+++- |+.-..|-++.+-|- ...+ +..++ -.+.++++++ .
T Consensus 100 ~l----------hdlcerhpDvvLlct---------silsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd 160 (480)
T KOG2380|consen 100 LL----------HDLCERHPDVVLLCT---------SILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD 160 (480)
T ss_pred cH----------HHHHhcCCCEEEEEe---------hhhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc
Confidence 22 22333 788887653 223333444443332 1111 11111 1123333333 2
Q ss_pred CCeEEecCCCCCC
Q 024606 167 KDVINIHHGLLPS 179 (265)
Q Consensus 167 ~~~iNiHpslLP~ 179 (265)
..+|..||=.=|+
T Consensus 161 fDIlctHpmfGPk 173 (480)
T KOG2380|consen 161 FDILCTHPMFGPK 173 (480)
T ss_pred cceEeecCCcCCC
Confidence 3699999977776
No 283
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=24.64 E-value=3.1e+02 Score=20.65 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEEEecCC
Q 024606 83 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 83 v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ag~~~ 125 (265)
..+.+++.|+++.........-.+++.+..+ ++|+||+..-.+
T Consensus 61 ~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~ 105 (132)
T cd01988 61 AERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGS 105 (132)
T ss_pred HHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCC
Confidence 4566677899876443211122356777665 799997665443
No 284
>CHL00194 ycf39 Ycf39; Provisional
Probab=24.61 E-value=2.6e+02 Score=25.43 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=35.4
Q ss_pred ceEEEEEeCC--chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 39 YKVAVLASKQ--EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 39 ~rIav~~Sg~--g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
|||.|+|..+ |+.+ +.|++. | ++|.++.-+.. . .......|+.+...+- .+.+.+.+.++++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~---g---~~V~~l~R~~~-----~-~~~l~~~~v~~v~~Dl---~d~~~l~~al~g~ 65 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE---G---YQVRCLVRNLR-----K-ASFLKEWGAELVYGDL---SLPETLPPSFKGV 65 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC---C---CeEEEEEcChH-----H-hhhHhhcCCEEEECCC---CCHHHHHHHHCCC
Confidence 5788877533 4433 344433 3 67766653321 1 1222234666654331 1234566667788
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|.|+.+.
T Consensus 66 d~Vi~~~ 72 (317)
T CHL00194 66 TAIIDAS 72 (317)
T ss_pred CEEEECC
Confidence 9887653
No 285
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=24.55 E-value=3.9e+02 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=19.2
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEee
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVIS 73 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit 73 (265)
|+||+++|.|. |. .+++.+.+.. ..++++|+.
T Consensus 1 m~rVgIiG~G~iG~---~~~~~l~~~~-~~~l~~v~~ 33 (265)
T PRK13303 1 MMKVAMIGFGAIGA---AVLELLEHDP-DLRVDWVIV 33 (265)
T ss_pred CcEEEEECCCHHHH---HHHHHHhhCC-CceEEEEEE
Confidence 58999999976 33 2333333221 367777774
No 286
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=24.25 E-value=1.7e+02 Score=22.51 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCCC----CCcHHHHHHHHcCCCEEE
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHY 96 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~~----~~~~v~~~a~~~gIP~~~ 96 (265)
..+.+.+++| ++..||..++.. .+..+.+.|-++|||+..
T Consensus 57 ~~i~~~i~~~----~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKNG----EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHcC----CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 3455555555 455566543221 134578889999999985
No 287
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.19 E-value=1.5e+02 Score=23.52 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=41.6
Q ss_pred EEEEEeCCc--hh-HHHHHHHH----HcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 41 VAVLASKQE--HC-LVDFLYGW----QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 41 Iav~~Sg~g--~~-l~~ll~~~----~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
|.|+.+|+. |. .+++++.+ ..+++.+.=+++-..+..+.+..+.+.++++||++.. +.-..-+++ .+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~--~~s~~l~~~---~~~ 75 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISG--HRSRQLTEE---DLD 75 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTT--SBBCBGGHH---HHH
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCccc--ceecccccc---ccc
Confidence 456666652 33 34555554 3333222223333223344567789999999999742 211111122 234
Q ss_pred CCCEEEEEecC
Q 024606 114 NTDFLVLARYM 124 (265)
Q Consensus 114 ~~D~vv~ag~~ 124 (265)
++|+||...=.
T Consensus 76 ~~D~Ii~m~~~ 86 (138)
T PF01451_consen 76 EADLIITMDDS 86 (138)
T ss_dssp HSSEEEESSHH
T ss_pred cCCEEEEccHH
Confidence 78999987643
No 288
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=24.00 E-value=2.2e+02 Score=27.26 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=32.3
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHH-hhCCCE
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL-VQNTDF 117 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~-l~~~D~ 117 (265)
|||+|+|.|. .-+.+.+.+... ..+++ ++...+ ..+.+..++.|+++...+.. ....+.+. +.++|.
T Consensus 1 m~viIiG~G~--ig~~~a~~L~~~--g~~v~-vid~~~----~~~~~~~~~~~~~~~~gd~~---~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 1 MKIIIVGAGQ--VGYTLAENLSGE--NNDVT-VIDTDE----ERLRRLQDRLDVRTVVGNGS---SPDVLREAGAEDADL 68 (453)
T ss_pred CEEEEECCCH--HHHHHHHHHHhC--CCcEE-EEECCH----HHHHHHHhhcCEEEEEeCCC---CHHHHHHcCCCcCCE
Confidence 5899998765 222333333222 25665 443321 12333333367777654321 12222222 235676
Q ss_pred EEEE
Q 024606 118 LVLA 121 (265)
Q Consensus 118 vv~a 121 (265)
++++
T Consensus 69 vi~~ 72 (453)
T PRK09496 69 LIAV 72 (453)
T ss_pred EEEe
Confidence 6554
No 289
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.96 E-value=2.6e+02 Score=24.73 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=20.2
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCC
Q 024606 39 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 75 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~ 75 (265)
|||+|+|-|+ |..+...|.. . .++++.|..++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~---g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--E---GHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--C---CCceEEEEcCH
Confidence 6899999887 4444433332 1 36787777665
No 290
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=23.95 E-value=2.1e+02 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=20.4
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCC-CCceEEEEee
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVIS 73 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~-l~~~I~~Vit 73 (265)
++||+++|.|.-. +.+.+++.++. .+.++++|.-
T Consensus 2 ~~rvgiIG~GaIG--~~va~~l~~~~~~~~~l~~V~~ 36 (267)
T PRK13301 2 THRIAFIGLGAIA--SDVAAGLLADAAQPCQLAALTR 36 (267)
T ss_pred ceEEEEECccHHH--HHHHHHHhcCCCCceEEEEEec
Confidence 5899999988621 23334444442 2478877743
No 291
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.95 E-value=1.2e+02 Score=28.58 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=26.2
Q ss_pred HHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEEEec
Q 024606 84 IRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARY 123 (265)
Q Consensus 84 ~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ag~ 123 (265)
++.-++.|||++-+.-.+....+.+.++|+ +||++|+-|-
T Consensus 122 l~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 122 LKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 344478899986443222223346677776 8999999884
No 292
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=23.94 E-value=3.6e+02 Score=27.42 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 37 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 37 ~~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
+.-|++|+|.|. |.....++..+ | +.| .|+..+ ...++.++++|..+..++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--G---A~V-~v~d~~-----~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--G---AIV-RAFDTR-----PEVKEQVQSMGAEFLELD 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--C---CEE-EEEeCC-----HHHHHHHHHcCCeEEecc
Confidence 458999999776 33333333332 3 453 334332 224788888887765554
No 293
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=23.82 E-value=5.4e+02 Score=24.93 Aligned_cols=59 Identities=5% Similarity=0.087 Sum_probs=33.9
Q ss_pred CceEEEEEeCCchhHHHHHHHHHc-CCCCceEEEEeeCCCCCCC-----------cHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPN-----------SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~-~~l~~~I~~Vit~~~~~~~-----------~~v~~~a~~~gIP~~~~~ 98 (265)
..|++++|+|. ..+.+.+.+++ +..+.++++++...+.... ..+.+.++++++-...+.
T Consensus 128 ~~rvLIiGag~--~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA 198 (451)
T TIGR03023 128 LRRVLIVGAGE--LGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIA 198 (451)
T ss_pred CCcEEEEeCCH--HHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEe
Confidence 46888888766 33455555443 3446889998875432210 124555666666654443
No 294
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=23.75 E-value=1.9e+02 Score=26.25 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=28.5
Q ss_pred EEeCCchhHHHHHH----HHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 44 LASKQEHCLVDFLY----GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 44 ~~Sg~g~~l~~ll~----~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
+|=|+||....+++ ..+++.+ +|.+|-|+. .-...|+++|||+...+
T Consensus 25 vGLGTGSTv~~~i~~L~~~~~~~~l--~i~~VptS~------~t~~~a~~~Gipl~~l~ 75 (228)
T PRK13978 25 LGIGTGSTMELLLPQMAQLIKERGY--NITGVCTSN------KIAFLAKELGIKICEIN 75 (228)
T ss_pred EEeCchHHHHHHHHHHHHHhhccCc--cEEEEeCcH------HHHHHHHHcCCcEechh
Confidence 44566665444443 3434443 477776644 23688999999987654
No 295
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.75 E-value=2.8e+02 Score=24.46 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=38.9
Q ss_pred EEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh-CCCEEE
Q 024606 44 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 119 (265)
Q Consensus 44 ~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~-~~D~vv 119 (265)
+|-|.-.+.+..-+++..| ++ .++|.. .+..+.++|+++|||+..-.- ...|+.+.++ .+|++=
T Consensus 62 vGAGTV~~~e~a~~a~~aG---A~--FivSP~---~~~~v~~~~~~~~i~~iPG~~----TptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 62 VGAGTVLTAEQAEAAIAAG---AQ--FIVSPG---FDPEVIEYAREYGIPYIPGVM----TPTEIMQALEAGADIVK 126 (196)
T ss_dssp EEEES--SHHHHHHHHHHT----S--EEEESS-----HHHHHHHHHHTSEEEEEES----SHHHHHHHHHTT-SEEE
T ss_pred eEEEeccCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCcccCCcC----CHHHHHHHHHCCCCEEE
Confidence 4555555556655566555 33 467765 466799999999999875221 2346777776 889884
No 296
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=23.63 E-value=3.4e+02 Score=24.66 Aligned_cols=20 Identities=5% Similarity=0.137 Sum_probs=13.5
Q ss_pred CceEEEEEeCCchhHHHHHHHHH
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQ 60 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~ 60 (265)
|+||.|.+.+.+. .++++++
T Consensus 1 ~~~vLv~g~~~~~---~~~~~l~ 20 (326)
T PRK12767 1 MMNILVTSAGRRV---QLVKALK 20 (326)
T ss_pred CceEEEecCCccH---HHHHHHH
Confidence 5899999887764 4444443
No 297
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=23.53 E-value=3.7e+02 Score=24.40 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=32.9
Q ss_pred CceEEEEEeCCc-h-hHHHHHHHHHcCCCCceEEEEeeCCCCCCC---cHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g-~-~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~---~~v~~~a~~~gIP~~~~~ 98 (265)
++|.+|+.||+- | .+.. .+.+++ .+|.++--+--.... ....++|+.+|||.+.++
T Consensus 2 ~~kavvl~SGG~DStt~l~--~a~~~~---~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid 62 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLA--WAKKEG---YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIID 62 (222)
T ss_pred CceEEEEccCChhHHHHHH--HHHhcC---CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEec
Confidence 578888889862 2 2222 222233 566665443321111 336788999999998776
No 298
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=23.39 E-value=2.8e+02 Score=21.51 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=31.3
Q ss_pred EEEEEeCCch---hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCC
Q 024606 41 VAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 41 Iav~~Sg~g~---~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~ 100 (265)
|+|.+.|++. .+.+|.+++++- .++|. +.+++ ...+.+++.|+++..++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r--Gh~V~-~~~~~------~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR--GHEVR-LATPP------DFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT--T-EEE-EEETG------GGHHHHHHTT-EEEESSSC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc--CCeEE-Eeecc------cceecccccCceEEEecCC
Confidence 4566667643 244555655542 47887 66654 3577789999999887644
No 299
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=23.36 E-value=4.3e+02 Score=22.40 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=36.1
Q ss_pred CceEEEEEeCCc-hhHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEEC
Q 024606 38 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 38 ~~rIav~~Sg~g-~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~ 98 (265)
..++.+++.|.| +.+..+++.+.......++..+.+.+.... ...+.++++++++.++.+.
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~ 159 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHVID 159 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhcCeEEEEEe
Confidence 357888888887 356667766543322357877877764211 1335566666666555443
No 300
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=23.32 E-value=4.2e+02 Score=24.41 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=34.0
Q ss_pred EEEeCCchhHHHHHHHHHcCCCCceEEEEeeC-CCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEE
Q 024606 43 VLASKQEHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 120 (265)
Q Consensus 43 v~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~-~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ 120 (265)
|+..+..+.++.++...+ + ..++ +++. ++...+....+...++|||+..++. ..+...++++|.|++
T Consensus 90 ILT~s~S~~v~~~l~~~~--~-~~~V--~v~ESrP~~eG~~~a~~L~~~GI~vtli~D------sa~~~~m~~vd~Vlv 157 (253)
T PRK06372 90 IGTISSSQVLKAFISSSE--K-IKSV--YILESRPMLEGIDMAKLLVKSGIDVVLLTD------ASMCEAVLNVDAVIV 157 (253)
T ss_pred EEEeCCcHHHHHHHHhcC--C-CCEE--EEecCCCchHHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 333445556777765422 1 1233 3332 2221223345555678999987753 233334456777655
No 301
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=23.23 E-value=7.8e+02 Score=24.78 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=86.0
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
.++|+|+|.|. |..+...+.++ ..+|. +.++.. . .+.+.+.|+... ++.++++++|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-----G~~V~--~~d~~~---~--~~~~~~~g~~~~-----------~l~ell~~aD 196 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-----GMKVI--AYDPYI---S--PERAAQLGVELV-----------SLDELLARAD 196 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CCEEE--EECCCC---C--hhHHHhcCCEEE-----------cHHHHHhhCC
Confidence 47899999887 55555555443 35553 233311 1 233455565322 1345566899
Q ss_pred EEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCe--EEecCCCCCCCCCC----cHHHHHH
Q 024606 117 FLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDV--INIHHGLLPSFKGG----KPAKQAF 190 (265)
Q Consensus 117 ~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~--iNiHpslLP~yRG~----~pi~~ai 190 (265)
+|+++- |..+ -.++++..+.++..+.+. ||+ -||. ..+..|+
T Consensus 197 iV~l~l-----P~t~--------------------~t~~li~~~~l~~mk~ga~lIN~-------aRG~~vde~aL~~aL 244 (526)
T PRK13581 197 FITLHT-----PLTP--------------------ETRGLIGAEELAKMKPGVRIINC-------ARGGIIDEAALAEAL 244 (526)
T ss_pred EEEEcc-----CCCh--------------------HhhcCcCHHHHhcCCCCeEEEEC-------CCCceeCHHHHHHHH
Confidence 998753 2111 123488889999887664 554 4674 4567778
Q ss_pred HhCCC-EeEEEEEEecCccCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024606 191 DAGVK-LIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 253 (265)
Q Consensus 191 ~~G~~-~~GvTvH~v~~~~D~G~II~Q~~~~I~~~dt~~~L~~rl~~~~~~ll~~ai~~i~~g~ 253 (265)
.+|.- ..|.-|+.-..-. .-+.+....+-+.|.-...+... .+...+.+.+.+..+.+|+
T Consensus 245 ~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~--~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 245 KSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEA--QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred hcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHH--HHHHHHHHHHHHHHHHcCC
Confidence 88853 2445555544433 33555555666666543322221 1222344555555666664
No 302
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.06 E-value=1.8e+02 Score=23.11 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCCceEEEEeeCCC---CCCCcHHHHHHHHcCCCEEEECCC
Q 024606 52 LVDFLYGWQEGKLPVEITCVISNHD---RGPNSHVIRFLERHGIPYHYLCAK 100 (265)
Q Consensus 52 l~~ll~~~~~~~l~~~I~~Vit~~~---~~~~~~v~~~a~~~gIP~~~~~~~ 100 (265)
+.++++.+.+. .++|++.... ..-...+.+.|+++++|++.++..
T Consensus 61 ~~~~i~~L~~~----~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 61 LREFIRELAEK----GAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHHHHHHC----CCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 66777776543 3455544332 112466899999999999998853
No 303
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=22.96 E-value=2.8e+02 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=17.9
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEee
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVIS 73 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit 73 (265)
+|||.++|+|. .+.+. .++++. +.+|.++..
T Consensus 2 ~~kVLvlG~G~re~al~---~~l~~~--g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGREDAIA---RAIKRS--GAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHHHHH---HHHHhC--CCeEEEEEC
Confidence 58999999887 33333 233222 246666655
No 304
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=22.86 E-value=4.8e+02 Score=22.41 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=43.3
Q ss_pred CceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHH-HHHHHcCCCEEEECCCCCchHHHHHHHhhCC
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI-RFLERHGIPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~-~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
-++++|+|.|. |..+..-+.++ .+.| .|+..| |+. --|...|..+.. +.+.+..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~-----Ga~V--~V~e~D-----Pi~alqA~~dGf~v~~-----------~~~a~~~a 79 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL-----GARV--TVTEID-----PIRALQAAMDGFEVMT-----------LEEALRDA 79 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT-----T-EE--EEE-SS-----HHHHHHHHHTT-EEE------------HHHHTTT-
T ss_pred CCEEEEeCCCcccHHHHHHHhhC-----CCEE--EEEECC-----hHHHHHhhhcCcEecC-----------HHHHHhhC
Confidence 36789988876 44444444442 3555 344432 121 223445665431 33456689
Q ss_pred CEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChhHHhhcCCCeEEecCC
Q 024606 116 DFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHG 175 (265)
Q Consensus 116 D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~il~~~~~~~iNiHps 175 (265)
|++|.+-=.. .+|..+.++..+.++|-.--|
T Consensus 80 di~vtaTG~~-----------------------------~vi~~e~~~~mkdgail~n~G 110 (162)
T PF00670_consen 80 DIFVTATGNK-----------------------------DVITGEHFRQMKDGAILANAG 110 (162)
T ss_dssp SEEEE-SSSS-----------------------------SSB-HHHHHHS-TTEEEEESS
T ss_pred CEEEECCCCc-----------------------------cccCHHHHHHhcCCeEEeccC
Confidence 9998764332 178888888898887766544
No 305
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=22.77 E-value=2e+02 Score=24.96 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=11.9
Q ss_pred HHHHHHhhCCCEEEEEe
Q 024606 106 EELLELVQNTDFLVLAR 122 (265)
Q Consensus 106 ~~l~~~l~~~D~vv~ag 122 (265)
+.+.+.+.++|+||.+.
T Consensus 103 ~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 103 ENLELLINNVDLVLDCT 119 (202)
T ss_pred HHHHHHHhCCCEEEECC
Confidence 34555666899998775
No 306
>PRK13057 putative lipid kinase; Reviewed
Probab=22.75 E-value=2.8e+02 Score=25.11 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=3.4
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|.|+++|
T Consensus 51 ~d~iiv~G 58 (287)
T PRK13057 51 VDLVIVGG 58 (287)
T ss_pred CCEEEEEC
Confidence 44444443
No 307
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=22.37 E-value=3e+02 Score=25.74 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=35.5
Q ss_pred eEEEEEeCCc--hhHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCC-CEEEECC
Q 024606 40 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGI-PYHYLCA 99 (265)
Q Consensus 40 rIav~~Sg~g--~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~gI-P~~~~~~ 99 (265)
||++..||+- +.+..++... .| .++.+|..++.-.+ ...+.++|+++|+ |+..++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-lG---~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~ 62 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-IG---DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDA 62 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-hC---CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Confidence 6788889863 3455555432 13 36777777663211 1347888988886 9988764
No 308
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=22.25 E-value=3.3e+02 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=21.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHH-cCCCCceEEEEeeCC
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNH 75 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~-~~~l~~~I~~Vit~~ 75 (265)
..|++|+|+|.. .+.+.+... ++..+.++++++...
T Consensus 124 ~rrvLIIGag~~--~~~L~~l~~~~~~~g~~vVGfi~~d 160 (442)
T TIGR03013 124 KRRILVLGTGPR--AREIARLRRSSDRRGHEIVGFVPLP 160 (442)
T ss_pred CCcEEEEECCHH--HHHHHHHHHhCccCCeEEEEEEcCC
Confidence 467888887663 233322222 244468899988643
No 309
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=22.21 E-value=2e+02 Score=21.30 Aligned_cols=38 Identities=29% Similarity=0.256 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCCceEEEEeeCCCC-C----C-CcHHHHHHHHcCCCEE
Q 024606 54 DFLYGWQEGKLPVEITCVISNHDR-G----P-NSHVIRFLERHGIPYH 95 (265)
Q Consensus 54 ~ll~~~~~~~l~~~I~~Vit~~~~-~----~-~~~v~~~a~~~gIP~~ 95 (265)
++++.+++| +|..||..+.. . . +..+.+.|.++|||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 466666655 45666665432 1 1 3457888999999975
No 310
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.19 E-value=2.4e+02 Score=26.45 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=38.7
Q ss_pred ceEEEEEeCC-chhH-HHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCC
Q 024606 39 YKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l-~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
+||+|+|-|. |..+ ..|+++ | +++ .+.|+. .....++++++|.-...- ..+..+++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a---G---~~v--~v~~r~---~~ka~~~~~~~Ga~~a~s----------~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA---G---HEV--TVYNRT---PEKAAELLAAAGATVAAS----------PAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC---C---CEE--EEEeCC---hhhhhHHHHHcCCcccCC----------HHHHHHhCC
Confidence 5899999987 6554 466665 4 454 455553 223377888888765421 123445889
Q ss_pred EEEEE
Q 024606 117 FLVLA 121 (265)
Q Consensus 117 ~vv~a 121 (265)
+|+++
T Consensus 60 vVitm 64 (286)
T COG2084 60 VVITM 64 (286)
T ss_pred EEEEe
Confidence 98875
No 311
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=22.10 E-value=1.5e+02 Score=26.80 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=35.2
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC--Cch-HHHHHHHhhC
Q 024606 39 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--NER-EEELLELVQN 114 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~--~~~-~~~l~~~l~~ 114 (265)
|||+|+|.|. |+.+...|.. .| ++|..+ +.. + . .+..++.|+.+....... ... ..+..+....
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~--~g---~~V~~~-~r~-~----~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE--AG---RDVTFL-VRP-K----R-AKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH--CC---CceEEE-ecH-H----H-HHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 6899999987 4545544432 23 566544 322 1 1 334456776554311000 000 0011122347
Q ss_pred CCEEEEEe
Q 024606 115 TDFLVLAR 122 (265)
Q Consensus 115 ~D~vv~ag 122 (265)
+|+++++-
T Consensus 69 ~d~vilav 76 (305)
T PRK12921 69 FDLVILAV 76 (305)
T ss_pred CCEEEEEe
Confidence 89988874
No 312
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.07 E-value=1.8e+02 Score=23.10 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCceEEEEeeCCCC---CC----CcHHHHHHHHcCCCEEE
Q 024606 53 VDFLYGWQEGKLPVEITCVISNHDR---GP----NSHVIRFLERHGIPYHY 96 (265)
Q Consensus 53 ~~ll~~~~~~~l~~~I~~Vit~~~~---~~----~~~v~~~a~~~gIP~~~ 96 (265)
..+++.+.+| +|..||.-++. .+ ...+.+.|.+++||+..
T Consensus 60 ~~i~~~i~~g----~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 60 QQIGALIAEG----EIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hHHHHHHHcC----ceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 4466666666 46666654432 11 13477889999999985
No 313
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=21.98 E-value=5e+02 Score=22.07 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=33.6
Q ss_pred CceEEEEEeCCc-hhHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHc-CCCEEE
Q 024606 38 KYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERH-GIPYHY 96 (265)
Q Consensus 38 ~~rIav~~Sg~g-~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~-gIP~~~ 96 (265)
..++.+++.|.| +.+..+++.+....-..+|..+.+.+.... ...+.++++++ ++.++.
T Consensus 97 ~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~ 160 (222)
T cd06194 97 EGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALLWLAREHPNFRYIP 160 (222)
T ss_pred CCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHHHHHHHCCCeEEEE
Confidence 357888887777 456777775443222456777777664221 12345566544 565543
No 314
>PRK15076 alpha-galactosidase; Provisional
Probab=21.98 E-value=1.9e+02 Score=28.51 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=35.6
Q ss_pred CceEEEEEeCC-chhHHHHHHHHH-cCCCC-ceEEEEeeCCCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHh
Q 024606 38 KYKVAVLASKQ-EHCLVDFLYGWQ-EGKLP-VEITCVISNHDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 38 ~~rIav~~Sg~-g~~l~~ll~~~~-~~~l~-~~I~~Vit~~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
++||+|+|.|+ |.. .+++..+. ...+. .+|+.+=.+.++.. ..-+.+.+...+.+....... +..+.+
T Consensus 1 ~~KIaIIGaGsvg~~-~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~tt------D~~eal 73 (431)
T PRK15076 1 MPKITFIGAGSTVFT-KNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATT------DRREAL 73 (431)
T ss_pred CcEEEEECCCHHHhH-HHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEEC------CHHHHh
Confidence 47999999887 432 23322221 23343 36644322221110 111334445555543321111 123456
Q ss_pred hCCCEEEEE
Q 024606 113 QNTDFLVLA 121 (265)
Q Consensus 113 ~~~D~vv~a 121 (265)
+++|+||.+
T Consensus 74 ~dADfVv~t 82 (431)
T PRK15076 74 QGADYVINA 82 (431)
T ss_pred CCCCEEeEe
Confidence 689988754
No 315
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.97 E-value=2.7e+02 Score=25.18 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHcCCCCceEEEEeeCCCCCC----CcHHHHHHHHcCCCEEEEC
Q 024606 50 HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 50 ~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~----~~~v~~~a~~~gIP~~~~~ 98 (265)
+.|.++++++++|. .|+ +..+-++.+ +..+..+|+..|.|+..+.
T Consensus 105 ~Alr~l~k~Lk~G~---~i~-itpDgPkGp~~~~~~Gii~LA~~sg~pi~pv~ 153 (214)
T COG2121 105 SALRALLKALKQGK---SIA-ITPDGPKGPVHKIGDGIIALAQKSGVPIIPVG 153 (214)
T ss_pred HHHHHHHHHHhCCC---cEE-EcCCCCCCCceeccchhhHhhHhcCCCeEEEE
Confidence 46888888888874 331 222222322 4668899999999987654
No 316
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=21.93 E-value=2.6e+02 Score=26.32 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=31.7
Q ss_pred EEEEEeCC-chhHHHHHHHHHcCCCCc-eEEEEeeCCCCCCCcHHHHHHHH-cC--CCEEEECCCCCchHHHHHHHhhCC
Q 024606 41 VAVLASKQ-EHCLVDFLYGWQEGKLPV-EITCVISNHDRGPNSHVIRFLER-HG--IPYHYLCAKENEREEELLELVQNT 115 (265)
Q Consensus 41 Iav~~Sg~-g~~l~~ll~~~~~~~l~~-~I~~Vit~~~~~~~~~v~~~a~~-~g--IP~~~~~~~~~~~~~~l~~~l~~~ 115 (265)
|+|+|.|. |+.....|.. .+ +. +| ++..++ ...+.+.+++ .+ +....++- .+.+++.+.++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~--~~--~~~~v--~va~r~---~~~~~~~~~~~~~~~~~~~~~d~---~~~~~l~~~~~~~ 68 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR--RG--PFEEV--TVADRN---PEKAERLAEKLLGDRVEAVQVDV---NDPESLAELLRGC 68 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC--TT--CE-EE--EEEESS---HHHHHHHHT--TTTTEEEEE--T---TTHHHHHHHHTTS
T ss_pred CEEEcCcHHHHHHHHHHhc--CC--CCCcE--EEEECC---HHHHHHHHhhccccceeEEEEec---CCHHHHHHHHhcC
Confidence 67888843 3322222222 12 23 33 455552 2334455544 33 44444332 2345577778889
Q ss_pred CEEEEEe
Q 024606 116 DFLVLAR 122 (265)
Q Consensus 116 D~vv~ag 122 (265)
|+||.+.
T Consensus 69 dvVin~~ 75 (386)
T PF03435_consen 69 DVVINCA 75 (386)
T ss_dssp SEEEE-S
T ss_pred CEEEECC
Confidence 9999664
No 317
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.91 E-value=3.6e+02 Score=23.67 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh----CCCEEEEEe
Q 024606 52 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLAR 122 (265)
Q Consensus 52 l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~----~~D~vv~ag 122 (265)
+++-++.++... . .+.|+||. +.+.+..+++..|||+..-..|-. ...+.+.++ .++=+++.|
T Consensus 51 ~~~W~~e~k~~g--i-~v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP~--~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 51 LRAWLAELKEAG--I-KVVVVSNN---KESRVARAAEKLGVPFIYRAKKPF--GRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHhcC--C-EEEEEeCC---CHHHHHhhhhhcCCceeecccCcc--HHHHHHHHHHcCCChhHEEEEc
Confidence 556555554321 2 33467775 567789999999999986433322 234444444 455566665
No 318
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=21.82 E-value=1.3e+02 Score=20.69 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=27.0
Q ss_pred hhHHHHHHHHH---cCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEE
Q 024606 50 HCLVDFLYGWQ---EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 96 (265)
Q Consensus 50 ~~l~~ll~~~~---~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~ 96 (265)
..+..++.++. .+++..+.+-+|+.. ....-.+.|.+.|||+..
T Consensus 14 ~~l~~~i~~~Gg~~~~~lt~~~THLI~~~---~~~~K~~~A~~~gi~vV~ 60 (63)
T PF12738_consen 14 SQLRKLIEALGGKYSKDLTKKTTHLICSS---PEGKKYRKAKEWGIPVVS 60 (63)
T ss_dssp CHHHHHHHCTT-EEESSSSTT-SEEEEES-----HHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHHCCCEEeccccCCceEEEEeC---CCcHHHHHHHHCCCcEEC
Confidence 35777776642 334555666677754 344456789999999864
No 319
>PRK11175 universal stress protein UspE; Provisional
Probab=21.77 E-value=2.5e+02 Score=25.13 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEEEecCCCCcchhhhhhhhhhhhhhcccCcccccccccCChh
Q 024606 83 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK 160 (265)
Q Consensus 83 v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ag~~~~ip~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~ 160 (265)
+.++++++|++.....-..+.-.+++.+..+ ++|+||+...++ -.++=++-+=....
T Consensus 228 l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~---------------------~~~~~~llGS~a~~ 286 (305)
T PRK11175 228 MKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGR---------------------TGLSAAFLGNTAEH 286 (305)
T ss_pred HHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCcc---------------------CCCcceeecchHHH
Confidence 4566778898853211111223456666666 899998877665 01122222334677
Q ss_pred HHhhcCCCeEEecC
Q 024606 161 FLRSYGKDVINIHH 174 (265)
Q Consensus 161 il~~~~~~~iNiHp 174 (265)
++...+..++-++|
T Consensus 287 v~~~~~~pVLvv~~ 300 (305)
T PRK11175 287 VIDHLNCDLLAIKP 300 (305)
T ss_pred HHhcCCCCEEEEcC
Confidence 78877888887775
No 320
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=21.74 E-value=6.2e+02 Score=25.00 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=45.7
Q ss_pred CCceEEEEEeCCchhHHHHHHHHH-cCCCCceEEEEeeCCCCCC-------C-cHHHHHHHHcCCCEEEECCCCC--chH
Q 024606 37 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP-------N-SHVIRFLERHGIPYHYLCAKEN--ERE 105 (265)
Q Consensus 37 ~~~rIav~~Sg~g~~l~~ll~~~~-~~~l~~~I~~Vit~~~~~~-------~-~~v~~~a~~~gIP~~~~~~~~~--~~~ 105 (265)
...|++++|+|.. .+.+.+.++ ++....++++++...+... + ..+.+++++++|-...+.-... .+-
T Consensus 142 ~~rrVLIvGaG~~--g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l 219 (463)
T PRK10124 142 NKRMVAVAGDLPA--GQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARV 219 (463)
T ss_pred CCCcEEEEECCHH--HHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHH
Confidence 3467888887763 344444443 3344688999887542110 1 2355677778887655542211 112
Q ss_pred HHHHHHhh--CCCEEEEEec
Q 024606 106 EELLELVQ--NTDFLVLARY 123 (265)
Q Consensus 106 ~~l~~~l~--~~D~vv~ag~ 123 (265)
+++++.++ .+++.++.+.
T Consensus 220 ~ell~~~~~~~v~V~ivP~l 239 (463)
T PRK10124 220 KKLVRQLADTTCSVLLIPDV 239 (463)
T ss_pred HHHHHHHHHcCCeEEEecch
Confidence 34454444 4566555443
No 321
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=21.54 E-value=5.6e+02 Score=22.50 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh
Q 024606 55 FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 113 (265)
Q Consensus 55 ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~ 113 (265)
.++++++ .-.+|.+++|.+ ......++++-|++++..+.. ...+++...++
T Consensus 33 v~~al~~--~~d~i~v~isp~----tp~t~~~~~~~gv~vi~tpG~--GYv~Dl~~al~ 83 (177)
T COG2266 33 VLEALRK--IVDEIIVAISPH----TPKTKEYLESVGVKVIETPGE--GYVEDLRFALE 83 (177)
T ss_pred HHHHHHh--hcCcEEEEeCCC----CHhHHHHHHhcCceEEEcCCC--ChHHHHHHHHH
Confidence 3445443 234666566543 234789999999999875533 23456666665
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.49 E-value=3.6e+02 Score=20.29 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=36.1
Q ss_pred EEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEE
Q 024606 41 VAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFL 118 (265)
Q Consensus 41 Iav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~v 118 (265)
|.|+|.|. .-..+++.+.++. .+++.|=.++ ...+.+++.|+++...+. .+++.++.+. +++.+
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~--~~vvvid~d~------~~~~~~~~~~~~~i~gd~----~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGG--IDVVVIDRDP------ERVEELREEGVEVIYGDA----TDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTT--SEEEEEESSH------HHHHHHHHTTSEEEES-T----TSHHHHHHTTGGCESEE
T ss_pred eEEEcCCH--HHHHHHHHHHhCC--CEEEEEECCc------HHHHHHHhcccccccccc----hhhhHHhhcCccccCEE
Confidence 34555543 3345555555432 3554333322 346777888988776332 2345555544 78877
Q ss_pred EEEe
Q 024606 119 VLAR 122 (265)
Q Consensus 119 v~ag 122 (265)
+++.
T Consensus 67 v~~~ 70 (116)
T PF02254_consen 67 VILT 70 (116)
T ss_dssp EEES
T ss_pred EEcc
Confidence 7653
No 323
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.45 E-value=3.9e+02 Score=26.28 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=28.6
Q ss_pred ccccCCCCCCceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEE
Q 024606 29 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 96 (265)
Q Consensus 29 ~~~~~~~~~~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~ 96 (265)
+.|.+.. ..+||.|+|.|. +.+ ++...+.+. .++| .+++.+ .....+.+++.||+++.
T Consensus 7 ~~~~~~~-~~~~v~v~G~G~-sG~-a~a~~L~~~--G~~V--~~~D~~---~~~~~~~l~~~gi~~~~ 64 (473)
T PRK00141 7 LSALPQE-LSGRVLVAGAGV-SGR-GIAAMLSEL--GCDV--VVADDN---ETARHKLIEVTGVADIS 64 (473)
T ss_pred hhhcccc-cCCeEEEEccCH-HHH-HHHHHHHHC--CCEE--EEECCC---hHHHHHHHHhcCcEEEe
Confidence 4445432 335799999875 222 333332222 2444 345542 12233455667888764
No 324
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=21.41 E-value=86 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=37.1
Q ss_pred cCCCeEEecCCCCCCCCCCcH----HHHHHHhCCCEeEEEEEEecCccCCCCeeEE
Q 024606 165 YGKDVINIHHGLLPSFKGGKP----AKQAFDAGVKLIGATSHFVTEELDAGPIIEQ 216 (265)
Q Consensus 165 ~~~~~iNiHpslLP~yRG~~p----i~~ai~~G~~~~GvTvH~v~~~~D~G~II~Q 216 (265)
+....+-.|+=.+|.+||.+- .+|-.+---...-+++-++.+..--|.||.|
T Consensus 58 i~~~~vecHa~y~P~fRG~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ 113 (151)
T PF11039_consen 58 IQPSVVECHAMYDPGFRGYALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICR 113 (151)
T ss_pred EeeeeEEEEeeeccccchhHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhh
Confidence 344589999999999999432 3444333334466777778888899999877
No 325
>PRK13054 lipid kinase; Reviewed
Probab=21.34 E-value=4.7e+02 Score=23.83 Aligned_cols=57 Identities=7% Similarity=-0.050 Sum_probs=25.6
Q ss_pred CceEEEEEeCCch---hHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEE
Q 024606 38 KYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 97 (265)
Q Consensus 38 ~~rIav~~Sg~g~---~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~ 97 (265)
|+|+.++.-+.+. .+..++..+.+.. .++....|.++.. ...+.+.+.+.+.....+
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g--~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv 62 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEG--HTLHVRVTWEKGD-AARYVEEALALGVATVIA 62 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcC--CEEEEEEecCCCc-HHHHHHHHHHcCCCEEEE
Confidence 4677777665542 2445555544332 3444345544211 122333333445555443
No 326
>PRK10307 putative glycosyl transferase; Provisional
Probab=21.24 E-value=6.8e+02 Score=23.36 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=41.1
Q ss_pred ceEEEEEeCC-chhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC-EEEECCCCCchHHHHHHHhhCCC
Q 024606 39 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP-YHYLCAKENEREEELLELVQNTD 116 (265)
Q Consensus 39 ~rIav~~Sg~-g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP-~~~~~~~~~~~~~~l~~~l~~~D 116 (265)
..|+++|.-. .-++..|++++..=+-..++..++.... +....+.+.++++|+. +.... ....+++.+.+..+|
T Consensus 230 ~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g-~~~~~l~~~~~~~~l~~v~f~G---~~~~~~~~~~~~~aD 305 (412)
T PRK10307 230 KIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQG-GGKARLEKMAQCRGLPNVHFLP---LQPYDRLPALLKMAD 305 (412)
T ss_pred EEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCC-hhHHHHHHHHHHcCCCceEEeC---CCCHHHHHHHHHhcC
Confidence 3444444321 2246666666542100123444555431 1124466788888876 33322 123456777777899
Q ss_pred EEEEEe
Q 024606 117 FLVLAR 122 (265)
Q Consensus 117 ~vv~ag 122 (265)
+.++..
T Consensus 306 i~v~ps 311 (412)
T PRK10307 306 CHLLPQ 311 (412)
T ss_pred EeEEee
Confidence 987654
No 327
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=21.23 E-value=2.8e+02 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=17.4
Q ss_pred EEEEeeCCCCCC--C----cHHHHHHHHcCCCEEEEC
Q 024606 68 ITCVISNHDRGP--N----SHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 68 I~~Vit~~~~~~--~----~~v~~~a~~~gIP~~~~~ 98 (265)
+-.||+++++.. + ....+.|+++|+.++.+|
T Consensus 28 fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 28 FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp --EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 445888885532 1 236789999999999888
No 328
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=21.12 E-value=6.2e+02 Score=24.24 Aligned_cols=55 Identities=9% Similarity=0.150 Sum_probs=29.0
Q ss_pred ceEEEEEeCCc-hh--HHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECC
Q 024606 39 YKVAVLASKQE-HC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 99 (265)
Q Consensus 39 ~rIav~~Sg~g-~~--l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~ 99 (265)
++|++.++|+| |. ..++.+.+.+.... ++..+-+.. . .+ ...-..++++++.++.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~-~-~e---~~l~~~~~~~~~~I~~ 58 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGD-G-LE---AFLVKQYGIEFELIPS 58 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEecccc-c-ce---eeeccccCceEEEEec
Confidence 57888888774 53 45666666543222 343332322 1 11 2223455888887763
No 329
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=21.06 E-value=2.9e+02 Score=26.29 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=32.5
Q ss_pred EEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHH---HHHHHhh--CCCEEEEEecCC
Q 024606 69 TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 69 ~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~---~l~~~l~--~~D~vv~ag~~~ 125 (265)
+.|||.+.-..-..+.+..+++|+.+..++-..+...+ +..+.++ ++|.||-.|=+.
T Consensus 25 ~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 86 (374)
T cd08183 25 VLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGS 86 (374)
T ss_pred EEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCch
Confidence 35777652111123555567789887766422232223 3344444 799999999775
No 330
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=21.05 E-value=4.8e+02 Score=24.84 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred eEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEECCCC-CchHH---HHHHHhh--CCCEEEEEecCC
Q 024606 67 EITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAKE-NEREE---ELLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 67 ~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~~~~-~~~~~---~l~~~l~--~~D~vv~ag~~~ 125 (265)
+-+.|||.+.-.. -..+.+..++.|+.+..++..+ +...+ +..+.++ ++|.||-.|=+.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS 97 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGS 97 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 3456787652111 1346677788899988775322 22223 3444454 799999988765
No 331
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=21.05 E-value=2.1e+02 Score=28.09 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=39.8
Q ss_pred ceEEEEEeCCchhHHHHHHHHHc--CCCC-ceEEEEeeC-CCCCC--CcHHHHHHHHcCCCEEEECCCCCchHHHHHHHh
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQE--GKLP-VEITCVISN-HDRGP--NSHVIRFLERHGIPYHYLCAKENEREEELLELV 112 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~--~~l~-~~I~~Vit~-~~~~~--~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l 112 (265)
|||+|+|.|+.- -..++..+.. ..++ .+|+.+=.+ +++.. ..-+.+.++++|.++...... +..+.+
T Consensus 1 ~KI~iIGaGS~~-tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~------d~~~al 73 (419)
T cd05296 1 MKLTIIGGGSSY-TPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTT------DRREAL 73 (419)
T ss_pred CEEEEECCchHh-HHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeC------CHHHHh
Confidence 699999987742 1233333221 3344 566544333 21110 122456667788776543221 234567
Q ss_pred hCCCEEEEE
Q 024606 113 QNTDFLVLA 121 (265)
Q Consensus 113 ~~~D~vv~a 121 (265)
+++|+||..
T Consensus 74 ~gadfVi~~ 82 (419)
T cd05296 74 EGADFVFTQ 82 (419)
T ss_pred CCCCEEEEE
Confidence 789998754
No 332
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.04 E-value=2.7e+02 Score=25.29 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=9.1
Q ss_pred CceEEEEEeCC
Q 024606 38 KYKVAVLASKQ 48 (265)
Q Consensus 38 ~~rIav~~Sg~ 48 (265)
|+||+|+|.|.
T Consensus 1 m~~I~iIG~G~ 11 (277)
T PRK06928 1 MEKIGFIGYGS 11 (277)
T ss_pred CCEEEEECccH
Confidence 46899999876
No 333
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=20.84 E-value=2.3e+02 Score=27.91 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCEEEECCCCCchHHHHHHHh----hCCCEEEEEecC
Q 024606 82 HVIRFLERHGIPYHYLCAKENEREEELLELV----QNTDFLVLARYM 124 (265)
Q Consensus 82 ~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l----~~~D~vv~ag~~ 124 (265)
-+..+++++|+.+.....-. .+.+++.+.+ +++|+|++.|=.
T Consensus 224 ~L~a~l~~~G~~v~~~~~v~-Dd~~~i~~~l~~a~~~~DlIItTGG~ 269 (419)
T PRK14690 224 MLLALARRWGHAPVDLGRVG-DDRAALAARLDRAAAEADVILTSGGA 269 (419)
T ss_pred HHHHHHHHCCCEEEEEeeeC-CCHHHHHHHHHHhCccCCEEEEcCCc
Confidence 46788999998776544211 1223344444 369999988743
No 334
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=20.83 E-value=4e+02 Score=25.17 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=34.0
Q ss_pred EEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCC-CchH---HHHHHHhh--CCCEEEEEecCC
Q 024606 69 TCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NERE---EELLELVQ--NTDFLVLARYMQ 125 (265)
Q Consensus 69 ~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~~~---~~l~~~l~--~~D~vv~ag~~~ 125 (265)
+.|||.+.-.....+.+..+++|+.+..++.-+ +... ++..+.++ ++|.||-.|=+.
T Consensus 26 ~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 88 (367)
T cd08182 26 VLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGS 88 (367)
T ss_pred EEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 357776522112346677788898887765322 2222 34455555 799999888765
No 335
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=20.80 E-value=3.4e+02 Score=22.53 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=33.2
Q ss_pred eEEEEEeCCchh---HHHHHHHHHcCCCCceEEEEeeCCCCC----------CCcHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHDRG----------PNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~g~~---l~~ll~~~~~~~l~~~I~~Vit~~~~~----------~~~~v~~~a~~~gIP~~~~~ 98 (265)
|-+|+..|.|+. +..|.-+.+.+. ..++.||.|+... ......++|+.+|++...+.
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~t~~~~~~--~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 129 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEFTP--LNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAP 129 (157)
T ss_pred CcEEEEECchHHHhcccHHHHHHHhcC--CCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcC
Confidence 334555666653 455544433322 3466677665421 13457899999999987654
No 336
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=20.56 E-value=3.6e+02 Score=22.28 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=13.8
Q ss_pred HHHHHHHHcCCCEEEEC
Q 024606 82 HVIRFLERHGIPYHYLC 98 (265)
Q Consensus 82 ~v~~~a~~~gIP~~~~~ 98 (265)
....+|+.+|++...+.
T Consensus 130 d~~~la~a~G~~~~~v~ 146 (172)
T cd02004 130 RYDLVAEAFGGKGELVT 146 (172)
T ss_pred CHHHHHHHCCCeEEEEC
Confidence 46788999999988765
No 337
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=20.43 E-value=2.7e+02 Score=26.30 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=37.2
Q ss_pred eEEEEEeCC--chhHHH----HHHHHHcCCC-CceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEEC
Q 024606 40 KVAVLASKQ--EHCLVD----FLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 98 (265)
Q Consensus 40 rIav~~Sg~--g~~l~~----ll~~~~~~~l-~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~ 98 (265)
|..++|-|- |...+. +.+++.+..+ +.+|.++.|-..+..+..+.+.|+++|+|+..++
T Consensus 193 ~~l~vGIGcrrg~~~e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E~gL~~~a~~lg~pl~~~~ 258 (315)
T PRK05788 193 KNVVLGIGCRKGVSAEEIAEAVERALEALNIDPRAVKAIASITLKKDEPGLLQLAEELGVPFITFS 258 (315)
T ss_pred CeEEEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHccEEeeeeccCCCHHHHHHHHHhCCCeEEeC
Confidence 455666553 443333 3333444333 3567777776555556789999999999998875
No 338
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=20.42 E-value=5.3e+02 Score=24.41 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCCceEEEEeeCC-CCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhhCCCEEEEEe
Q 024606 51 CLVDFLYGWQEGKLPVEITCVISNH-DRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLAR 122 (265)
Q Consensus 51 ~l~~ll~~~~~~~l~~~I~~Vit~~-~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~~~D~vv~ag 122 (265)
.|+.|+.+.+++. ..-+.+|.. ++.++.-+.+-.+++|||+..+-. ..+-..+.++|+|++-.
T Consensus 143 Vl~~L~~Aa~~~~---~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlD------SaVgyvMe~vD~VlVGA 206 (313)
T KOG1466|consen 143 VLEVLLTAAQNKK---RFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLD------SAVGYVMERVDLVLVGA 206 (313)
T ss_pred HHHHHHHHHhcCc---eEEEEEecCCCCCchhHHHHHHHhcCCCeEEEeh------hhHHHHHhhccEEEEcc
Confidence 5777888876653 333455532 333455566777889999876421 23444555788886543
No 339
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=20.39 E-value=6.4e+02 Score=24.61 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=47.1
Q ss_pred eEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCC---CcHHHHHHHHcCCCEEEECCCC-CchHHHHH---HHh
Q 024606 40 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAKE-NEREEELL---ELV 112 (265)
Q Consensus 40 rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~---~~~v~~~a~~~gIP~~~~~~~~-~~~~~~l~---~~l 112 (265)
+..+||.|. ++.+.+.+.. +..+=+.|||++.-.. -..+.+..++.||.+..++.-. +...+.+. +.+
T Consensus 8 ~~i~fG~g~---l~~l~~~~~~--~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~ 82 (377)
T COG1454 8 TEILFGRGS---LKELGEEVKR--LGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVA 82 (377)
T ss_pred ceEEecCCh---HHHHHHHHHh--cCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHH
Confidence 344566554 4444444332 1234457888873111 1457788888999988877432 22333333 444
Q ss_pred h--CCCEEEEEecCC
Q 024606 113 Q--NTDFLVLARYMQ 125 (265)
Q Consensus 113 ~--~~D~vv~ag~~~ 125 (265)
+ +||.||..|=+-
T Consensus 83 ~~~~~D~iIalGGGS 97 (377)
T COG1454 83 REFGPDTIIALGGGS 97 (377)
T ss_pred HhcCCCEEEEeCCcc
Confidence 4 799999999775
No 340
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=20.34 E-value=3.3e+02 Score=25.24 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=28.9
Q ss_pred ceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCC
Q 024606 39 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 93 (265)
Q Consensus 39 ~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP 93 (265)
++|++.|.|.-. +.+++...+|..++++++|.-.. .....+.++..+.+
T Consensus 1 l~vgiVGcGaIG--~~l~e~v~~~~~~~e~v~v~D~~----~ek~~~~~~~~~~~ 49 (255)
T COG1712 1 LKVGIVGCGAIG--KFLLELVRDGRVDFELVAVYDRD----EEKAKELEASVGRR 49 (255)
T ss_pred CeEEEEeccHHH--HHHHHHHhcCCcceeEEEEecCC----HHHHHHHHhhcCCC
Confidence 578898888622 34555566677778988765433 22334444455443
No 341
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.23 E-value=2.9e+02 Score=21.02 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=17.2
Q ss_pred HHHHHHHcCCCEEEECCCCCchHHHHHHHhh--CCCEEEEEe
Q 024606 83 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR 122 (265)
Q Consensus 83 v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~--~~D~vv~ag 122 (265)
+...++++|..+..++.. ...+++.+.+. +||+|.+..
T Consensus 20 la~~l~~~G~~v~~~d~~--~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 20 LAAYLRKAGHEVDILDAN--VPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHTTBEEEEEESS--B-HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHCCCeEEEECCC--CCHHHHHHHHhcCCCcEEEEEc
Confidence 444555555555444321 12244444443 556555544
No 342
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=20.21 E-value=34 Score=32.62 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=27.7
Q ss_pred CCCCCCCCCCcHHHHHHHhCCCEeEEEEEEecCccC
Q 024606 174 HGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELD 209 (265)
Q Consensus 174 pslLP~yRG~~pi~~ai~~G~~~~GvTvH~v~~~~D 209 (265)
.+.+|.|||+..+.--...|....|++++.....+-
T Consensus 69 aa~IPDfRGp~GVWTL~~kG~~~~~~df~~ArPt~T 104 (353)
T KOG1905|consen 69 AAGIPDFRGPQGVWTLQQKGKDKFGVDFSEARPTVT 104 (353)
T ss_pred ccCCCCccCCCceeehhhcCccccCCchhhcCCcch
Confidence 456799999999865667888888888887655433
No 343
>PRK03673 hypothetical protein; Provisional
Probab=20.03 E-value=2e+02 Score=28.13 Aligned_cols=67 Identities=18% Similarity=0.393 Sum_probs=39.2
Q ss_pred CceEEEEEeCCchhHHHHHHHHHcCCCCceEEEEeeCCCCCCCcHHHHHHHHcCCCEEEECCCCCchHHHHHHHhh----
Q 024606 38 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ---- 113 (265)
Q Consensus 38 ~~rIav~~Sg~g~~l~~ll~~~~~~~l~~~I~~Vit~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~l~~~l~---- 113 (265)
|||+.++..|.. |+ .| +|. |. ....+.+.+.+.|+.+.....- ..+.+++.+.++
T Consensus 1 ~~~v~Iis~GdE-----ll----~G----~i~----dt---N~~~la~~L~~~G~~v~~~~~v-~D~~~~i~~~l~~a~~ 59 (396)
T PRK03673 1 MLRVEMLSTGDE-----VL----HG----QIV----DT---NAAWLADFFFHQGLPLSRRNTV-GDNLDALVAILRERSQ 59 (396)
T ss_pred CCEEEEEEeccc-----CC----CC----eEE----Eh---HHHHHHHHHHHCCCEEEEEEEc-CCCHHHHHHHHHHHhc
Confidence 589999998864 21 23 221 22 1244677788999887654321 112344555443
Q ss_pred CCCEEEEEecCC
Q 024606 114 NTDFLVLARYMQ 125 (265)
Q Consensus 114 ~~D~vv~ag~~~ 125 (265)
++|+||+.|=.-
T Consensus 60 ~~DlVI~tGGlG 71 (396)
T PRK03673 60 HADVLIVNGGLG 71 (396)
T ss_pred cCCEEEEcCCCC
Confidence 689999888544
Done!