Query 024609
Match_columns 265
No_of_seqs 223 out of 987
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02938 phosphatidylserine de 100.0 1.7E-61 3.7E-66 466.7 18.6 245 1-263 1-245 (428)
2 KOG2420 Phosphatidylserine dec 100.0 1.2E-41 2.5E-46 318.9 4.7 119 95-216 72-191 (382)
3 PTZ00403 phosphatidylserine de 100.0 2.3E-40 4.9E-45 314.0 9.5 145 95-242 47-206 (353)
4 PRK00044 psd phosphatidylserin 100.0 1.1E-37 2.3E-42 288.3 11.2 142 98-242 3-156 (288)
5 PRK00723 phosphatidylserine de 100.0 1.7E-37 3.7E-42 288.6 8.8 150 87-242 18-178 (297)
6 PRK03140 phosphatidylserine de 100.0 7.2E-37 1.6E-41 279.2 11.3 138 99-242 4-151 (259)
7 PRK03934 phosphatidylserine de 100.0 3E-35 6.5E-40 269.3 11.6 129 109-242 3-141 (265)
8 PRK09629 bifunctional thiosulf 100.0 1.8E-35 3.8E-40 297.2 9.7 142 98-242 326-479 (610)
9 PLN02964 phosphatidylserine de 100.0 3.3E-33 7E-38 281.7 9.6 146 91-242 348-510 (644)
10 TIGR00163 PS_decarb phosphatid 99.9 2.2E-27 4.7E-32 214.3 7.0 96 145-242 1-109 (238)
11 KOG2419 Phosphatidylserine dec 99.9 1E-24 2.2E-29 217.5 6.5 146 91-242 682-842 (975)
12 COG0688 Psd Phosphatidylserine 99.9 6.1E-23 1.3E-27 186.3 3.5 125 104-242 2-137 (239)
13 PF02666 PS_Dcarbxylase: Phosp 99.8 1.2E-21 2.7E-26 172.0 6.5 83 158-242 1-94 (202)
14 TIGR00164 PS_decarb_rel phosph 98.6 6.7E-08 1.5E-12 84.9 5.0 71 155-242 15-85 (189)
15 PRK05305 phosphatidylserine de 98.3 4.1E-07 8.8E-12 80.9 3.6 68 158-242 37-104 (206)
16 COG0688 Psd Phosphatidylserine 73.7 2.4 5.1E-05 39.1 2.3 88 108-196 10-100 (239)
17 COG2190 NagE Phosphotransferas 62.1 5.8 0.00013 34.6 2.2 30 161-190 26-55 (156)
18 PRK09439 PTS system glucose-sp 55.0 8.3 0.00018 33.9 2.0 31 161-191 41-71 (169)
19 TIGR00830 PTBA PTS system, glu 54.1 8.6 0.00019 32.0 1.8 32 161-192 19-50 (121)
20 cd00210 PTS_IIA_glc PTS_IIA, P 53.3 8.8 0.00019 32.0 1.8 32 161-192 19-50 (124)
21 PF00358 PTS_EIIA_1: phosphoen 52.6 7.7 0.00017 32.7 1.3 19 173-191 35-53 (132)
22 PLN02938 phosphatidylserine de 51.2 6.4 0.00014 39.4 0.7 30 59-88 48-77 (428)
23 PF01551 Peptidase_M23: Peptid 30.8 70 0.0015 24.1 3.5 27 178-205 14-40 (96)
24 PF13422 DUF4110: Domain of un 28.5 34 0.00074 27.5 1.4 22 144-165 4-25 (96)
25 PF03471 CorC_HlyC: Transporte 26.5 2.6E+02 0.0057 20.6 6.0 29 134-167 16-44 (81)
26 COG4942 Membrane-bound metallo 25.6 63 0.0014 32.5 3.0 31 178-209 332-363 (420)
27 TIGR01995 PTS-II-ABC-beta PTS 24.5 49 0.0011 34.4 2.2 19 173-191 495-513 (610)
28 PRK09824 PTS system beta-gluco 23.4 56 0.0012 34.3 2.3 19 173-191 511-529 (627)
29 PRK10255 PTS system N-acetyl g 22.2 58 0.0013 34.4 2.1 20 173-192 531-550 (648)
No 1
>PLN02938 phosphatidylserine decarboxylase
Probab=100.00 E-value=1.7e-61 Score=466.69 Aligned_cols=245 Identities=73% Similarity=1.180 Sum_probs=223.3
Q ss_pred CcccCCCCccccccccccccccccccchhhhhhhcccCcCccccccCCCCCCccceeeechhHHHHHHHHHHHHHHHhhh
Q 024609 1 MKFRFSNKVSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLPGATFATLLMLGALHARRMYD 80 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~lg~~~~~~~~~ 80 (265)
||||+++++|+|+++.+++|+|+ ++ +.+++++|++++++++.||+||||++||+|||++|+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 66 (428)
T PLN02938 1 MKFRVSSKLPLLARYSLLRHQHH-HQ-------------SSRASVNGGSGSSQGNSFLLPGATVATLLMLGALHARRLYE 66 (428)
T ss_pred CCCCCCCCcccccccCcchhhcc-hh-------------cccccccCCCCCCCCceeecCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888776 43 13357889999999999999999999999999999999999
Q ss_pred hHHHHHhhhhccceeecChHHHHHHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhh
Q 024609 81 DRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLRE 160 (265)
Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~~~ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~Sfnd 160 (265)
++++++++++|++++|+++|++.++++||++++||+||+++++++|.|+|+++|++|++.|+|||+|++.|+++|+||||
T Consensus 67 ~~~~~~~~~~g~~~~~~~~~~~~ll~lLP~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f~inl~E~~~p~~~Y~Sfnd 146 (428)
T PLN02938 67 DKKVEEAREKGIEPEFSPDTKASFLRLLPLRSISRLWGSLTSVELPVWMRPYVYKAWARAFHSNLEEAALPLEEYASLRE 146 (428)
T ss_pred HHHHHHHHhcCcccccCCHHHHHHHHHccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCcCHHHhhcchhhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred hhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCCceeeeccccCccc
Q 024609 161 FFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQCGEQESSP 240 (265)
Q Consensus 161 FFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G~~h~~~~~~~g~~ 240 (265)
||+|+||||+||||+++++|||||||+|+++|.|+++++.++||||++|||++|||+++.++.+.++.++.+ ++..
T Consensus 147 FFtRkLKpgaRPid~d~~~iVSPaDG~v~~~g~I~~~~~~~~qVKG~~YSL~~LLG~~~~~~~~~~~~~~~~----~~~~ 222 (428)
T PLN02938 147 FFVRSLKEGARPIDPDPNCLVSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEEKE----EETL 222 (428)
T ss_pred hheeccCCCCCcCCCCCCeEEeccCCceEEeeeecCCCceEEEecCCcccHHHHcCCCcccccccccccchh----hccc
Confidence 999999999999999999999999999999999986444667999999999999998887776665544443 2478
Q ss_pred ccCCCceEEEEecCCCcccccCC
Q 024609 241 TEKTKKSWWSISLASPRVRDTAI 263 (265)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~ 263 (265)
.+++.++|||++.|.+|+||+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~ 245 (428)
T PLN02938 223 KDKSSKSWLRVSLASPKLRDPVS 245 (428)
T ss_pred cccccchhhhhhhcccccccccc
Confidence 88888999999999999998654
No 2
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=318.87 Aligned_cols=119 Identities=50% Similarity=0.826 Sum_probs=113.3
Q ss_pred eecChHHHHHHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCC-ccccCchhhhhhhcCCCCCCcC
Q 024609 95 EFKPDAKASFLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALP-LGEYASLREFFVRTLKQGSRPI 173 (265)
Q Consensus 95 ~~~~~~~~~ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~p-l~~Y~SfndFFtRkLKpgaRPI 173 (265)
...+.|+..++..||+|++||+||++++.++|.|+|++.|++|++.|||||+|++.| +++|+||+|||+|+||||+|||
T Consensus 72 r~~~~wq~~~y~sLPlrtlSR~WG~~n~~elP~wlR~~~y~lys~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpI 151 (382)
T KOG2420|consen 72 RTYSIWQFRVYSSLPLRTLSRVWGQLNSLELPVWLRPPGYGLYARTFGCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPI 151 (382)
T ss_pred eeccceEEEEEEecchHHHHHHHHhhhheeccchhcchhhhhhhHhhccCchhccCchhhhhhhHHHHHhhccCCCCccc
Confidence 455669999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcC
Q 024609 174 DPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLG 216 (265)
Q Consensus 174 d~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG 216 (265)
|++ ..+||||||||++||.|++ ++||||||++|||++|||
T Consensus 152 dp~-~piVSPaDGkIL~fG~v~~--~~IEqVKG~tYSleafLG 191 (382)
T KOG2420|consen 152 DPA-SPLVSPADGKILHFGVVED--NEIEQVKGHTYSLEAFLG 191 (382)
T ss_pred CCC-CceecCCCCcEEEEEEecC--ceeeEecCeeeeHHHHcC
Confidence 975 4799999999999999997 489999999999999999
No 3
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=2.3e-40 Score=314.01 Aligned_cols=145 Identities=28% Similarity=0.411 Sum_probs=131.4
Q ss_pred eecChHHHHHHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCC
Q 024609 95 EFKPDAKASFLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPID 174 (265)
Q Consensus 95 ~~~~~~~~~ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId 174 (265)
..++++++.++++||.+.+||++|+++++++|.|++.++|++|++.|+|||+|+++|+++|+||||||+|+||||+|||+
T Consensus 47 ~~~~~~~~~~l~llp~~~~Srl~G~~a~~~~p~~lr~~ii~~fik~y~Inl~E~~~~~~~Y~SfndFFtR~lk~~~RPi~ 126 (353)
T PTZ00403 47 NAQQSSKLFWARLLFGRTRSRITGSIFNIEIPNTYRLPIYNFLIKYMGINKEEIKYPIESYKSIGDFFSRYIREETRPIG 126 (353)
T ss_pred eeccHHHHHHHHHhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHhhCChhcCCCHHHceeecccCCCCCCC
Confidence 45678999999999999999999999999999889999999999999999999998899999999999999999999995
Q ss_pred -CCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCC--------------ceeeeccccCcc
Q 024609 175 -PDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEG--------------DMHEQCGEQESS 239 (265)
Q Consensus 175 -~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G--------------~~h~~~~~~~g~ 239 (265)
+++++|||||||+|+++|.|+++ .. +||||++|||++|||++ .++.|.+| ||||.|+|++|+
T Consensus 127 ~~~~~~iVSPaDg~v~~~g~I~~~-~~-~qvKG~~Ysl~~LLg~~-~a~~~~~g~~~~~~~v~yLsP~DYHR~HsP~~g~ 203 (353)
T PTZ00403 127 DVSDYSIVSPCDSELTDYGELSSE-YL-ENVKGVKFNVNTFLGSD-MQKKYNDGSTKFFYAIFYLSPKKYHHFHAPFNFK 203 (353)
T ss_pred CCCCCeEEeCCCceeEeeeEecCC-CE-EEeCCCcccHHHHhCch-hHHhhcCCCCcEEEEEEEECcceeeEEeccCceE
Confidence 57889999999999999999874 34 49999999999999964 45555544 799999999999
Q ss_pred ccc
Q 024609 240 PTE 242 (265)
Q Consensus 240 ~~~ 242 (265)
+.+
T Consensus 204 v~~ 206 (353)
T PTZ00403 204 YKI 206 (353)
T ss_pred EEE
Confidence 865
No 4
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=288.26 Aligned_cols=142 Identities=33% Similarity=0.596 Sum_probs=130.7
Q ss_pred ChHHHHHHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCC-ccccCchhhhhhhcCCCCCCcCCCC
Q 024609 98 PDAKASFLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALP-LGEYASLREFFVRTLKQGSRPIDPD 176 (265)
Q Consensus 98 ~~~~~~ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~p-l~~Y~SfndFFtRkLKpgaRPId~d 176 (265)
..+...+++++|++++||++|+++++++| |+++.+|+.|++.|+|||+|+++| +++|+||||||+|+|||++|||+++
T Consensus 3 ~~~~~~~~~~~p~~~~Sr~~g~~~~~~~~-~~~~~~i~~f~~~~~i~~~E~~~~~~~~y~s~~~FF~R~lk~~~Rpi~~~ 81 (288)
T PRK00044 3 DRLKILLQYLLPKHLLTRLAGWLASSRAG-WLTTAVIRLFIKKYKVDMSEAQKPDPAAYKTFNDFFTRALKDGARPIDED 81 (288)
T ss_pred hHHHHHHHHHcChHHHHHHHHHHHcCCCc-cchHHHHHHHHHHhCCCHHHHccCChhhCCCHHHhceecccCCCCCCCCC
Confidence 45778899999999999999999999998 788888999999999999999876 8999999999999999999999999
Q ss_pred CCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcC-CCCCCCCCCCC----------ceeeeccccCccccc
Q 024609 177 PHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLG-SSSFLPMIEEG----------DMHEQCGEQESSPTE 242 (265)
Q Consensus 177 ~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG-~~~~~~~f~~G----------~~h~~~~~~~g~~~~ 242 (265)
+++|||||||+|+.+|+|+++ . ++||||++|||++||| ++++++.|.+| |||++|+|++|++.+
T Consensus 82 ~~~ivSPaDG~v~~~~~i~~~-~-~~~vKG~~Ysl~~lL~~~~~~~~~~~~G~~i~iyLsp~DYHr~HsPv~G~v~~ 156 (288)
T PRK00044 82 PNALVSPADGAISQLGPIEDG-Q-IFQAKGHSYSLEALLGGDAALADPFRNGSFATIYLSPRDYHRVHMPCDGTLRE 156 (288)
T ss_pred CCEEEeCCCceEEeEEeecCC-C-EEEECCceeeHHHHcCCChHHHHhcCCCEEEEEEECcceeeEEeccCCcEEEE
Confidence 999999999999999999874 3 4599999999999998 55678888887 799999999999976
No 5
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.7e-37 Score=288.55 Aligned_cols=150 Identities=29% Similarity=0.473 Sum_probs=136.8
Q ss_pred hhhhccceeecChHHHHHHHhh-chHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhhhhhhc
Q 024609 87 AREKGIEIEFKPDAKASFLRLL-PLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRT 165 (265)
Q Consensus 87 ~~~~~i~~~~~~~~~~~ll~lL-P~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~SfndFFtRk 165 (265)
.++..+++.|++.+++.++.+| |.+++|+++|++++++++ +. .|+.|++.|+|||+|+++|+++|+||||||+|+
T Consensus 18 ~~~~~~~~~y~~~~gr~~l~~l~~~~~~S~~~G~~~~~~~s---~~-~I~~f~~~~~id~~e~~~~~~~y~sfn~FFtR~ 93 (297)
T PRK00723 18 AGEKYLKWLYSSPIGKNLLELLIKKKIFSKIYGWYCDSRLS---RK-KIKPFVNDFNIDMSESEKPLSDFKSFNDFFTRK 93 (297)
T ss_pred cHHHHHHHHhcCHHHHHHHHHhcCcHHHHHHHHHHhCCcch---HH-HHHHHHHHhCCCHHHhhcChhhCCCHHHceeec
Confidence 3466788999999999888766 669999999999999965 65 469999999999999998899999999999999
Q ss_pred CCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCC----------ceeeeccc
Q 024609 166 LKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEG----------DMHEQCGE 235 (265)
Q Consensus 166 LKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G----------~~h~~~~~ 235 (265)
|||++|||++++++|||||||+|++++.|+++ ..+ ||||++|||++|||++++++.|.+| ||||+|+|
T Consensus 94 lk~~~Rpi~~~~~~ivSPaDg~v~~~~~i~~~-~~~-~vKG~~Ysl~~LLg~~~~a~~f~~G~~~~~yLsp~DYHR~HsP 171 (297)
T PRK00723 94 LKPEARPIDQGENILISPGDGRLLAYENIDLN-SLF-QVKGKTYSLKELLGDPELAKKYAGGTCLILRLCPTDYHRFHFP 171 (297)
T ss_pred CCCCCCCCCCCCCEEEECCCcEEEEEEEEcCC-CeE-EEcCceeeHHHHcCChhHHHhcCCCEEEEEEECCCeEEEEEcc
Confidence 99999999988899999999999999999874 455 9999999999999999999999987 79999999
Q ss_pred cCccccc
Q 024609 236 QESSPTE 242 (265)
Q Consensus 236 ~~g~~~~ 242 (265)
++|++.+
T Consensus 172 v~G~v~~ 178 (297)
T PRK00723 172 DSGICEE 178 (297)
T ss_pred CCcEEEE
Confidence 9999976
No 6
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=7.2e-37 Score=279.18 Aligned_cols=138 Identities=29% Similarity=0.443 Sum_probs=128.3
Q ss_pred hHHHHHHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCC
Q 024609 99 DAKASFLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPH 178 (265)
Q Consensus 99 ~~~~~ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~ 178 (265)
.+...+++++|.+++|+++|++++++++ +. +|+.|++.|+|||+|+++|+++|+||||||+|+|||++|||+++++
T Consensus 4 ~~~~~~~~~~~~~~~s~~~g~~~~~~~s---~~-~i~~f~~~~~i~~~e~~~~~~~y~sfn~FF~R~lk~~~Rpi~~~~~ 79 (259)
T PRK03140 4 TLYRLLIELTNGRFTSYLLRKFAQSRLS---SI-LIPSYAKVYQINQDEMEKGLKEYRTLHELFTRKLKEGKRPIDTDAS 79 (259)
T ss_pred HHHHHHHHHcchHHHHHHHHHHhCCccc---HH-HHHHHHHHhCCChHHhccChhcCCCHHHhceecCCCCCCCCCCCCC
Confidence 4677899999999999999999999964 55 6799999999999999999999999999999999999999998889
Q ss_pred eeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCC----------ceeeeccccCccccc
Q 024609 179 CLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEG----------DMHEQCGEQESSPTE 242 (265)
Q Consensus 179 ~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G----------~~h~~~~~~~g~~~~ 242 (265)
+|||||||+|+++|.|+++ ..+ ||||++|||++|||++++++.|.+| |||++|+|++|++.+
T Consensus 80 ~vvSPaDg~v~~~~~i~~~-~~~-~iKg~~ysl~~lL~~~~~a~~f~~G~~~~i~Lsp~DYHr~h~Pv~G~v~~ 151 (259)
T PRK03140 80 SIVSPVDGVFADVGPIEDD-KTF-DVKGKRYSIAEMLGNEERAQRYAGGTYMVLYLSPSHYHRIHSPISGTVTE 151 (259)
T ss_pred EEEeCCCcEEEEEeecCCC-CEE-EECCceeeHHHhcCChhHHhhhcCCeEEEEEECccceEEEeccCCcEEEE
Confidence 9999999999999999874 455 9999999999999999999999988 799999999999977
No 7
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=3e-35 Score=269.29 Aligned_cols=129 Identities=27% Similarity=0.534 Sum_probs=118.7
Q ss_pred chHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceE
Q 024609 109 PLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIV 188 (265)
Q Consensus 109 P~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV 188 (265)
|.+++|+++|+++++++|.|++.++|++|++.|+|||+|++ ++++|+||||||+|+|||+ |||+++++.|||||||+|
T Consensus 3 ~~~~~S~~~g~~~~~~~~~~~~~~~i~~f~~~~~i~~~e~~-~~~~y~sfn~FF~R~lk~~-Rpi~~~~~~ivSPaDG~v 80 (265)
T PRK03934 3 LSNALSRIFGKFAGYKFPKFIQKFINASYVKIFKIDMSEFK-PPENYKSLNALFTRSLKKP-REFDEDPNIFISPCDSLI 80 (265)
T ss_pred chHHHHHHHHHHhcCCCCccchHHHHHHHHHHHCCCHHHhc-CcccCCCHHHhccccCCCC-CCCCCCCCEEEECCCcEE
Confidence 66899999999999999989999999999999999999997 5899999999999999995 999999999999999999
Q ss_pred EEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCC----------ceeeeccccCccccc
Q 024609 189 LRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEG----------DMHEQCGEQESSPTE 242 (265)
Q Consensus 189 ~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G----------~~h~~~~~~~g~~~~ 242 (265)
+++|.|+++ .. +||||++|||++|||++.. +.|.+| |||++|+|++|++.+
T Consensus 81 ~~~~~i~~~-~~-~~vKg~~y~l~~lL~~~~~-~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~ 141 (265)
T PRK03934 81 TECGSLEED-KA-LQIKGMEYSIEELLGESNS-ELVNGFDYINFYLSPKDYHRYHAPCDLEILE 141 (265)
T ss_pred EEEEEECCC-CE-EEECCccccHHHHcCCcch-hhcCCcEEEEEEECcceEEEEeccCCcEEEE
Confidence 999999874 34 4999999999999998744 788877 799999999999977
No 8
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.8e-35 Score=297.16 Aligned_cols=142 Identities=28% Similarity=0.445 Sum_probs=130.4
Q ss_pred ChHHHHHHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCccccc-CCccccCchhhhhhhcCCCCCCcCCCC
Q 024609 98 PDAKASFLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAA-LPLGEYASLREFFVRTLKQGSRPIDPD 176 (265)
Q Consensus 98 ~~~~~~ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~-~pl~~Y~SfndFFtRkLKpgaRPId~d 176 (265)
..+...++.+||++++||++|+++++++| |++..+|++|++.|+|||+|++ +++++|+||||||+|+||||+|||+.+
T Consensus 326 ~~~~~~~~~llp~~~~S~~~g~~a~~~~~-~~~~~~i~~fi~~y~i~l~E~~~~~~~~y~sfn~FF~R~lk~~~Rpi~~~ 404 (610)
T PRK09629 326 DRLFIISQYLLPHHLLSRLAGCVAECRVR-WFKNAFTAWFARRYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDTT 404 (610)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHhCccH-hhHHHHHHHHHHHhCCCHHHhhccCcccCCCHHHhcccccCCCCCCCCCC
Confidence 34778889999999999999999999997 7899999999999999999998 459999999999999999999999999
Q ss_pred CCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcC-CCCCCCCCCCC----------ceeeeccccCccccc
Q 024609 177 PHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLG-SSSFLPMIEEG----------DMHEQCGEQESSPTE 242 (265)
Q Consensus 177 ~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG-~~~~~~~f~~G----------~~h~~~~~~~g~~~~ 242 (265)
++.|||||||+|+++|.|+++ .++||||++|||++||| +.+.++.|.+| ||||+|+|++|++.+
T Consensus 405 ~~~ivSPaDg~v~~~g~i~~~--~~~~vKG~~Ysl~eLL~~~~~~~~~~~~G~~~~iyLsP~DYHR~H~Pv~G~v~~ 479 (610)
T PRK09629 405 PGAILSPADGAISQLGPIDHG--RIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLRE 479 (610)
T ss_pred CCeEEecCccceeeeccccCC--cEEEECCCcccHHHHhCCCHHHHhhcCCCeEEEEEECCCeeEEEeecCCcEEEE
Confidence 999999999999999999874 44599999999999999 55677888887 799999999999977
No 9
>PLN02964 phosphatidylserine decarboxylase
Probab=99.98 E-value=3.3e-33 Score=281.68 Aligned_cols=146 Identities=19% Similarity=0.297 Sum_probs=133.7
Q ss_pred ccceeecChHHHHHHHhhch---HHHHHHHHHhhcCCCCCcchhhhHHHHHHHh--CCCcccccCCccccCchhhhhhhc
Q 024609 91 GIEIEFKPDAKASFLRLLPL---RSISRFWGFLTSVEYPVWMRPYVYKAWARAF--HSNLEEAALPLGEYASLREFFVRT 165 (265)
Q Consensus 91 ~i~~~~~~~~~~~ll~lLP~---r~iSrl~G~~~~~~lp~~~r~~iik~fik~f--~IdL~E~~~pl~~Y~SfndFFtRk 165 (265)
++++.|++.+++.+++++.. +.+|+++|++++++.+ +. .|+.|++.| +|||+|+++|+++|+||||||+|+
T Consensus 348 ~~~~lY~~~~G~~~l~~~~~~~l~~~S~~~G~~~dsp~S---~~-~I~~Fi~~~~~~id~~E~~~p~~~y~SfNdFFtRk 423 (644)
T PLN02964 348 SMRAIYQSKIGLRLMDQGAKEILQRLSEKQGKKMNSVES---AQ-DIPKFLEFFKDQINMDEVKYPLEHFKTFNEFFIRE 423 (644)
T ss_pred hHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhHcCChhh---HH-HHHHHHHHhhcCcCHHHhhcCcccCCCHHHcceec
Confidence 56789999999999999988 7789999999999976 66 469999988 899999999999999999999999
Q ss_pred CCCCCCcCCC--CCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCC----------ceeeec
Q 024609 166 LKQGSRPIDP--DPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEG----------DMHEQC 233 (265)
Q Consensus 166 LKpgaRPId~--d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G----------~~h~~~ 233 (265)
||||+|||+. ++++|||||||+|+++|.|+++ ..+ ||||++|||++|||++++++.|.+| ||||+|
T Consensus 424 LKp~aRPi~~~~~~~~iVSPaDg~v~~~~~i~~~-~~~-~IKG~~Ysl~~LLg~~~~a~~f~gG~~~i~rLsP~DYHR~H 501 (644)
T PLN02964 424 LKPGARPIACMDNDDVAVCAADCRLMAFQSVDDS-TRF-WIKGRKFSIKGLLGKKVHSDAFLDGSLVIFRLAPQDYHRFH 501 (644)
T ss_pred CCCCCCCCCCCCCCCEEEECCCceeEEeeeecCC-cEE-EECCCcccHHHHcCCchhHHhcCCCEEEEEEECCceeceee
Confidence 9999999984 6779999999999999998864 455 9999999999999999999999998 799999
Q ss_pred cccCccccc
Q 024609 234 GEQESSPTE 242 (265)
Q Consensus 234 ~~~~g~~~~ 242 (265)
+|++|++.+
T Consensus 502 sPv~G~v~~ 510 (644)
T PLN02964 502 VPVSGVIEK 510 (644)
T ss_pred cCCCCEEEE
Confidence 999999976
No 10
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=99.94 E-value=2.2e-27 Score=214.28 Aligned_cols=96 Identities=41% Similarity=0.722 Sum_probs=87.0
Q ss_pred cccccCC-ccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCC-CCCC
Q 024609 145 LEEAALP-LGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSS-SFLP 222 (265)
Q Consensus 145 L~E~~~p-l~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~-~~~~ 222 (265)
|+|++++ +++|+||||||+|+|||++|||+++++.|||||||+|+++|+|+++ .. +||||++|||.+|||++ ++++
T Consensus 1 ~~e~~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~ivSPaDG~v~~~~~i~~~-~~-~~vKG~~ysl~~lL~~~~~~~~ 78 (238)
T TIGR00163 1 LDEAEKPDLADYRSLNEFFIRPLKLERRPVDKEPNALVSPADGVISEVGIINPN-QI-LQVKGMDYSLEELLGEKNPLSP 78 (238)
T ss_pred CchhccCCcccCCCHHHheeecCCCCCCCCCCCCCEEEECCCceeEEEEEecCC-cE-EEEcCCcccHHHHcCCChhHHH
Confidence 6899864 9999999999999999999999999999999999999999999874 34 49999999999999976 6777
Q ss_pred CCCCC-----------ceeeeccccCccccc
Q 024609 223 MIEEG-----------DMHEQCGEQESSPTE 242 (265)
Q Consensus 223 ~f~~G-----------~~h~~~~~~~g~~~~ 242 (265)
.|.+| |||++|+|++|++.+
T Consensus 79 ~f~~G~~~i~iyLsp~DYHr~hsPv~G~v~~ 109 (238)
T TIGR00163 79 YFRNGGFFVVTYLSPRDYHRFHSPCDCRLRK 109 (238)
T ss_pred hccCCeEEEEEEECccceeEEeccCCcEEEE
Confidence 88776 699999999999976
No 11
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=99.90 E-value=1e-24 Score=217.46 Aligned_cols=146 Identities=23% Similarity=0.353 Sum_probs=121.8
Q ss_pred ccceeecChHHHHHHHh---hchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhhhhhhcCC
Q 024609 91 GIEIEFKPDAKASFLRL---LPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLK 167 (265)
Q Consensus 91 ~i~~~~~~~~~~~ll~l---LP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLK 167 (265)
|++..|++...+-++.- -.++.+|--.|+-+++..+ .. -|+.|++.|.+||+|.+.|+.+|++|||||+|+||
T Consensus 682 gmR~iY~gk~~~r~~~~k~k~iL~~Ls~kQGkK~dS~~S---ak-~I~pFi~Ff~lnm~ev~~p~~~FKTFNEFFyRkLK 757 (975)
T KOG2419|consen 682 GMRAIYQGKIGLRLMDQKAKEILQTLSEKQGKKMDSVES---AK-QIPPFIEFFKLNMAEVKYPLKHFKTFNEFFYRKLK 757 (975)
T ss_pred ehhhhhcccccchhhhhhHHHHHHHHHHHhccccCchhh---hh-hcchHHhhhhcchhhhcCccccchhHHHHHHHhcC
Confidence 44556666544333211 1246788888999999976 23 36999999999999999999999999999999999
Q ss_pred CCCCcCC--CCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCC----------ceeeeccc
Q 024609 168 QGSRPID--PDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEG----------DMHEQCGE 235 (265)
Q Consensus 168 pgaRPId--~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G----------~~h~~~~~ 235 (265)
||+|||+ .+++++|||||+++.+|..|++. +.+ ||||..||++.|||.+--.+.|.+| ||||+|+|
T Consensus 758 PGsRp~a~~nn~dIlvspADsR~~af~~Ie~s-t~~-WIKGrkFsik~Llg~n~n~~~F~dgSi~IfRLAPQDYHRFHsP 835 (975)
T KOG2419|consen 758 PGSRPIACMNNKDILVSPADSRLMAFQSIEDS-TRF-WIKGRKFSIKGLLGYNVNPEAFLDGSIVIFRLAPQDYHRFHSP 835 (975)
T ss_pred CCCcccCCCCCCceeecccccceEeeeeeccc-ceE-EEeccEEehhHhhCCCCCchhccCCcEEEEEeccchhhhccCc
Confidence 9999996 57889999999999999999974 677 9999999999999988777878776 89999999
Q ss_pred cCccccc
Q 024609 236 QESSPTE 242 (265)
Q Consensus 236 ~~g~~~~ 242 (265)
|+|+..-
T Consensus 836 vnG~Igk 842 (975)
T KOG2419|consen 836 VNGVIGK 842 (975)
T ss_pred ccccccC
Confidence 9998753
No 12
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=99.86 E-value=6.1e-23 Score=186.31 Aligned_cols=125 Identities=37% Similarity=0.524 Sum_probs=114.9
Q ss_pred HHHhhchHHHHHHHHHhhcCCCCCcchhhhHHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEec
Q 024609 104 FLRLLPLRSISRFWGFLTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSP 183 (265)
Q Consensus 104 ll~lLP~r~iSrl~G~~~~~~lp~~~r~~iik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSP 183 (265)
+++++|....++++|+++....|.++....++.|++.|.+|++|++.|++.|.|||+||+|.|+++.||||++ +++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp~---~v~P 78 (239)
T COG0688 2 LRYLLPELSLTRLFGLLAGVRSPSPIIKREIYPFIAAFLVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDPE---RVSP 78 (239)
T ss_pred cccccchhhhhhhHHHHhhhcCCCceeehhhhhHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCCC---ccCC
Confidence 3568899999999999999998877788889999999999999999888999999999999999999999986 8999
Q ss_pred CCceEEEeeeecCCCceeEeecCCccchhhhcCCC-CCCCCCCCC----------ceeeeccccCccccc
Q 024609 184 VDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSS-SFLPMIEEG----------DMHEQCGEQESSPTE 242 (265)
Q Consensus 184 aDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~-~~~~~f~~G----------~~h~~~~~~~g~~~~ 242 (265)
+||+++++| |||+.||+++||+++ +++..+.+| |||++|+|++|+..+
T Consensus 79 ~D~~i~~~p-----------akG~~~sv~~ll~~~~el~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~ 137 (239)
T COG0688 79 ADGRIVVSP-----------ADGRVYSVEELLGPDDELAYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIE 137 (239)
T ss_pred CCCcEEEec-----------CCCeEEEHHHhcCChhhhccccCCceEEEEEeCcceeeeEeCCCCCEEEE
Confidence 999999988 899999999999955 677788887 899999999999876
No 13
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=99.84 E-value=1.2e-21 Score=171.99 Aligned_cols=83 Identities=36% Similarity=0.669 Sum_probs=76.6
Q ss_pred hhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCC-CCCCCCCCCC---------
Q 024609 158 LREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGS-SSFLPMIEEG--------- 227 (265)
Q Consensus 158 fndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~-~~~~~~f~~G--------- 227 (265)
|||||+|.+|+++|||+++++.|||||||+|+.+++|+++ ..+ ||||.+||+++|||+ +++++.|.+|
T Consensus 1 f~~FF~r~~r~~~R~i~~~~~~ivSPaDG~v~~~~~i~~~-~~~-~iKg~~y~l~~ll~~~~~~~~~~~~g~~i~i~Lsp 78 (202)
T PF02666_consen 1 FNDFFTRFFRDPARPIPDDPDAIVSPADGKVLVIGEIEED-SLF-QIKGQPYSLRELLGDPSPLAEPFQGGTFIVIYLSP 78 (202)
T ss_pred ChhHeehhcCCCCCCCCCCCCEEEeCcCcEEEeeEEECCC-ceE-EEecCcCCHHHHhCccccceeccCCceEEEEEcCC
Confidence 7999999999999999999999999999999999999874 455 999999999999998 7788888887
Q ss_pred -ceeeeccccCccccc
Q 024609 228 -DMHEQCGEQESSPTE 242 (265)
Q Consensus 228 -~~h~~~~~~~g~~~~ 242 (265)
|||++|+|++|++.+
T Consensus 79 ~DyHr~haPv~G~v~~ 94 (202)
T PF02666_consen 79 FDYHRNHAPVDGRVEE 94 (202)
T ss_pred CcceEEEecCCEEEEE
Confidence 799999999999976
No 14
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=98.57 E-value=6.7e-08 Score=84.86 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=50.6
Q ss_pred cCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCCceeeecc
Q 024609 155 YASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQCG 234 (265)
Q Consensus 155 Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G~~h~~~~ 234 (265)
+..|..||.|. +.||++++++.++|||||+|..++++.+ .+ ..|.-+-+ .=.....|||++|+
T Consensus 15 ~~~~~~~ffR~---p~R~~~~~~~~ivSPaDG~v~~i~~~~~---~~--~~g~~~~i---------~I~Lsp~DyHr~ha 77 (189)
T TIGR00164 15 FTLFTLQFFRD---PDREIPQGPEAVLSPADGRIDVVERARR---PF--PDGDGLKI---------SIFMSPFDVHVNRA 77 (189)
T ss_pred HHHHHHHhcCC---CCCCCCCCCCEEEeCCCcEEEEEEeecc---cc--CCCcEEEE---------EEEcCCcccceEEc
Confidence 34488888887 6799998999999999999999876543 11 11110111 11345669999999
Q ss_pred ccCccccc
Q 024609 235 EQESSPTE 242 (265)
Q Consensus 235 ~~~g~~~~ 242 (265)
|++|++.+
T Consensus 78 P~~G~v~~ 85 (189)
T TIGR00164 78 PAGGKVTY 85 (189)
T ss_pred ccccEEEE
Confidence 99999977
No 15
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=98.32 E-value=4.1e-07 Score=80.92 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=50.4
Q ss_pred hhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCccchhhhcCCCCCCCCCCCCceeeeccccC
Q 024609 158 LREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQCGEQE 237 (265)
Q Consensus 158 fndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tYSL~~LLG~~~~~~~f~~G~~h~~~~~~~ 237 (265)
|..||.|. | .||++++++.++|||||+|..+++++++ .+ | +++++ ..=.....+||++|+|++
T Consensus 37 ~~~~ffRd--p-~R~~~~~~~~i~SPaDG~v~~i~~v~d~--~~----~-----~~~~~---i~i~lsp~d~H~~~aP~~ 99 (206)
T PRK05305 37 FCLYFFRD--P-ERVIPTDDGLVVSPADGKVVVIEEVVPP--YG----D-----EPRLR---ISIFMSVFNVHVNRAPVS 99 (206)
T ss_pred HHHheecC--C-CCCCCCCCCEEEeCCCcEEEEEEEECCC--cc----C-----CceEE---EEEEECcccCCEEEeCcc
Confidence 77889998 3 7999989999999999999999998852 11 1 11111 111233559999999999
Q ss_pred ccccc
Q 024609 238 SSPTE 242 (265)
Q Consensus 238 g~~~~ 242 (265)
|++.+
T Consensus 100 G~V~~ 104 (206)
T PRK05305 100 GTVTK 104 (206)
T ss_pred CEEEE
Confidence 99976
No 16
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=73.66 E-value=2.4 Score=39.12 Aligned_cols=88 Identities=23% Similarity=0.182 Sum_probs=52.1
Q ss_pred hchHHHHHHHHHhhcCCCCCcchhhhHHHHHH---HhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecC
Q 024609 108 LPLRSISRFWGFLTSVEYPVWMRPYVYKAWAR---AFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPV 184 (265)
Q Consensus 108 LP~r~iSrl~G~~~~~~lp~~~r~~iik~fik---~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPa 184 (265)
.-.+.+|.+.+..+.+.+..+.-.+.++.|.- ...--++.+.--..-+.-+=.+|.|.+.|+ |-...|+..++|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp~-~v~P~D~~i~~~pa 88 (239)
T COG0688 10 SLTRLFGLLAGVRSPSPIIKREIYPFIAAFLVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDPE-RVSPADGRIVVSPA 88 (239)
T ss_pred hhhhhHHHHhhhcCCCceeehhhhhHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCCC-ccCCCCCcEEEecC
Confidence 34577888888888877655544434454432 222112222211234444556677888887 33334667999999
Q ss_pred CceEEEeeeecC
Q 024609 185 DGIVLRVGELKG 196 (265)
Q Consensus 185 DGkV~~~G~I~~ 196 (265)
||++..+.++.+
T Consensus 89 kG~~~sv~~ll~ 100 (239)
T COG0688 89 DGRVYSVEELLG 100 (239)
T ss_pred CCeEEEHHHhcC
Confidence 999997666543
No 17
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=62.08 E-value=5.8 Score=34.64 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred hhhhcCCCCCCcCCCCCCeeEecCCceEEE
Q 024609 161 FFVRTLKQGSRPIDPDPHCLVSPVDGIVLR 190 (265)
Q Consensus 161 FFtRkLKpgaRPId~d~~~lVSPaDGkV~~ 190 (265)
=|.-++-=+=--|.|....++|||||+|..
T Consensus 26 vFs~k~mGdGiAI~P~~g~vvAPvdG~v~~ 55 (156)
T COG2190 26 VFSEKMVGDGVAIKPSEGEVVAPVDGTVVL 55 (156)
T ss_pred HhhcccccCcEEEecCCCeEEeccCcEEEE
Confidence 344454422235667778999999999985
No 18
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=55.05 E-value=8.3 Score=33.86 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=21.0
Q ss_pred hhhhcCCCCCCcCCCCCCeeEecCCceEEEe
Q 024609 161 FFVRTLKQGSRPIDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 161 FFtRkLKpgaRPId~d~~~lVSPaDGkV~~~ 191 (265)
-|..++--.---|.+.+..++|||||+|...
T Consensus 41 vFs~k~mGdGvAI~P~~~~v~AP~dG~V~~v 71 (169)
T PRK09439 41 VFAEKIVGDGIAIKPTGNKMVAPVDGTIGKI 71 (169)
T ss_pred HhcccCccceEEEEccCCEEEecCCeEEEEE
Confidence 5666665322244555678999999999864
No 19
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=54.12 E-value=8.6 Score=32.02 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=19.9
Q ss_pred hhhhcCCCCCCcCCCCCCeeEecCCceEEEee
Q 024609 161 FFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVG 192 (265)
Q Consensus 161 FFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G 192 (265)
-|..++--.---|.+.+..++|||||+|...-
T Consensus 19 vFs~~~~G~G~aI~P~~~~v~AP~~G~v~~v~ 50 (121)
T TIGR00830 19 VFAEKIVGDGFAILPTDGKVVAPVDGKIGKIF 50 (121)
T ss_pred HhcccCccceEEEEcCCCeEEccCCeEEEEEc
Confidence 34444442222344556789999999998743
No 20
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=53.28 E-value=8.8 Score=32.03 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=20.7
Q ss_pred hhhhcCCCCCCcCCCCCCeeEecCCceEEEee
Q 024609 161 FFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVG 192 (265)
Q Consensus 161 FFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G 192 (265)
-|..++--.---|.+..+.+.|||||+|...-
T Consensus 19 vFs~~~lG~GvaI~P~~~~v~AP~~G~v~~i~ 50 (124)
T cd00210 19 VFASKMMGDGFAIKPSDGKVVAPVDGTIVQIF 50 (124)
T ss_pred HhcccCccceEEEEccCCeEECcCCeEEEEEc
Confidence 45555442222344556789999999998753
No 21
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=52.55 E-value=7.7 Score=32.68 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.2
Q ss_pred CCCCCCeeEecCCceEEEe
Q 024609 173 IDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 173 Id~d~~~lVSPaDGkV~~~ 191 (265)
|.++.+.++||+||+|...
T Consensus 35 I~p~~~~v~AP~~G~v~~i 53 (132)
T PF00358_consen 35 IIPSDGKVYAPVDGTVTMI 53 (132)
T ss_dssp EEESSSEEEESSSEEEEEE
T ss_pred EEcCCCeEEEEeeEEEEEE
Confidence 4455678999999999975
No 22
>PLN02938 phosphatidylserine decarboxylase
Probab=51.21 E-value=6.4 Score=39.41 Aligned_cols=30 Identities=20% Similarity=-0.029 Sum_probs=22.6
Q ss_pred echhHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 024609 59 LPGATFATLLMLGALHARRMYDDRKVEEAR 88 (265)
Q Consensus 59 ~~~~t~~~i~~lg~~~~~~~~~~~~~~~~~ 88 (265)
.+++|++.++++.++..++-.+.++++|.+
T Consensus 48 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g 77 (428)
T PLN02938 48 ATVATLLMLGALHARRLYEDKKVEEAREKG 77 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478899889999998777666666666643
No 23
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=30.85 E-value=70 Score=24.15 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=18.5
Q ss_pred CeeEecCCceEEEeeeecCCCceeEeec
Q 024609 178 HCLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 178 ~~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
..|.||+||+|...+.....+..+ .|+
T Consensus 14 ~~V~A~~~G~V~~~~~~~~~g~~V-~i~ 40 (96)
T PF01551_consen 14 TPVYAPADGKVVFVGEDPGYGNYV-IIQ 40 (96)
T ss_dssp -EEEESSSEEEEEEEEETTTEEEE-EEE
T ss_pred CEEEeCccEEEEEEEeccCCccEE-EEE
Confidence 469999999999999754433333 454
No 24
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=28.45 E-value=34 Score=27.49 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=16.5
Q ss_pred CcccccCCccccCchhhhhhhc
Q 024609 144 NLEEAALPLGEYASLREFFVRT 165 (265)
Q Consensus 144 dL~E~~~pl~~Y~SfndFFtRk 165 (265)
++++...-+.-+.||.+||.|.
T Consensus 4 ~~~d~~ptP~p~EsLr~Ff~RT 25 (96)
T PF13422_consen 4 DLDDWLPTPKPFESLRDFFART 25 (96)
T ss_pred CCccCCCCCCCCCcHHHHHHHh
Confidence 4455443378999999999997
No 25
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=26.54 E-value=2.6e+02 Score=20.64 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCC
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLK 167 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLK 167 (265)
+.-+.+.+++|+++ ++|.|++.|....+.
T Consensus 16 l~~l~~~~~~~l~~-----~~~~Tl~G~i~~~l~ 44 (81)
T PF03471_consen 16 LDDLNELLGLDLPE-----EDYDTLGGLILEQLG 44 (81)
T ss_dssp HHHHHHHHTS-TTT-----TTTSBHHHHHHHHHT
T ss_pred HHHHHHHHCcCCCc-----cchhhHHHHHHHHcC
Confidence 57888999999887 369999999999985
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.57 E-value=63 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred CeeEecCCceEEEeeeecCCCceeEeec-CCcc
Q 024609 178 HCLVSPVDGIVLRVGELKGVGAMIEQVK-GFSY 209 (265)
Q Consensus 178 ~~lVSPaDGkV~~~G~I~~~~~~ieqVK-G~tY 209 (265)
..|++|+||+|+--|...+= +.+..|+ |..|
T Consensus 332 a~V~A~AdG~VvyA~~l~GY-G~vvIldhG~gy 363 (420)
T COG4942 332 ATVKAIADGRVVYADWLRGY-GLVVILDHGGGY 363 (420)
T ss_pred CeeeeecCceEEechhhccC-ceEEEEEcCCcc
Confidence 57999999999998888764 4443565 6555
No 27
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=24.53 E-value=49 Score=34.38 Aligned_cols=19 Identities=47% Similarity=0.625 Sum_probs=15.2
Q ss_pred CCCCCCeeEecCCceEEEe
Q 024609 173 IDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 173 Id~d~~~lVSPaDGkV~~~ 191 (265)
|.+.++.++|||||+|...
T Consensus 495 i~P~~~~v~aP~~G~v~~~ 513 (610)
T TIGR01995 495 ILPTEGEVVAPVDGTVTAV 513 (610)
T ss_pred eeCCCCEEECCCCeEEEEE
Confidence 4456678999999999874
No 28
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=23.42 E-value=56 Score=34.31 Aligned_cols=19 Identities=37% Similarity=0.398 Sum_probs=15.2
Q ss_pred CCCCCCeeEecCCceEEEe
Q 024609 173 IDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 173 Id~d~~~lVSPaDGkV~~~ 191 (265)
|.++++.++|||||+|...
T Consensus 511 I~P~~~~v~AP~~G~v~~v 529 (627)
T PRK09824 511 ILPSVGEVRSPVAGRVASL 529 (627)
T ss_pred ecCCCCeEEccCCeEEEEE
Confidence 4455678999999999864
No 29
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=22.18 E-value=58 Score=34.38 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=15.3
Q ss_pred CCCCCCeeEecCCceEEEee
Q 024609 173 IDPDPHCLVSPVDGIVLRVG 192 (265)
Q Consensus 173 Id~d~~~lVSPaDGkV~~~G 192 (265)
|.+.+..++|||||+|....
T Consensus 531 I~P~~~~v~AP~~G~v~~v~ 550 (648)
T PRK10255 531 VKPTDKIVVSPAAGTIVKIF 550 (648)
T ss_pred EeCCCCeEEecCCeEEEEEc
Confidence 34455789999999999753
Done!