Query 024609
Match_columns 265
No_of_seqs 223 out of 987
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:15:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3our_B EIIA, phosphotransferas 50.8 4.9 0.00017 34.7 1.1 30 161-191 55-85 (183)
2 1ax3_A Iiaglc, glucose permeas 44.0 10 0.00035 31.7 2.0 21 176-196 11-31 (162)
3 2knc_B Integrin beta-3; transm 33.5 20 0.00068 26.6 2.0 19 55-73 9-27 (79)
4 2gpr_A Glucose-permease IIA co 31.6 13 0.00044 30.9 0.7 19 178-196 8-26 (154)
5 2gpr_A Glucose-permease IIA co 31.0 14 0.00048 30.6 0.8 29 161-190 28-57 (154)
6 1f3z_A EIIA-GLC, glucose-speci 28.2 19 0.00063 30.2 1.1 31 160-191 32-63 (161)
7 1ax3_A Iiaglc, glucose permeas 26.3 21 0.00073 29.8 1.1 31 160-191 32-63 (162)
8 1dcz_A Transcarboxylase 1.3S s 13.8 2.2E+02 0.0076 19.2 4.1 22 169-192 2-23 (77)
9 3lae_A UPF0053 protein HI0107; 12.6 3.8E+02 0.013 18.8 6.6 59 134-205 19-77 (81)
10 2r2z_A Hemolysin; APC85144, en 11.7 4.3E+02 0.015 18.9 6.1 61 134-205 26-86 (93)
No 1
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=50.79 E-value=4.9 Score=34.67 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=19.7
Q ss_pred hhhhcCC-CCCCcCCCCCCeeEecCCceEEEe
Q 024609 161 FFVRTLK-QGSRPIDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 161 FFtRkLK-pgaRPId~d~~~lVSPaDGkV~~~ 191 (265)
-|.-++- +|. -|.+.+..|+|||||+|...
T Consensus 55 vFs~~~mGdG~-AI~P~~g~v~AP~dG~V~~v 85 (183)
T 3our_B 55 VFAEKIVGDGI-AIKPTGNKMVAPVNGTIGKI 85 (183)
T ss_dssp HHHTTSSCEEE-EEEECSSEEECSSSEEEEEE
T ss_pred HhcccCccCeE-EEEcCCCEEEeCCCeEEEEE
Confidence 3554443 332 34455678999999999863
No 2
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=43.96 E-value=10 Score=31.75 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=15.5
Q ss_pred CCCeeEecCCceEEEeeeecC
Q 024609 176 DPHCLVSPVDGIVLRVGELKG 196 (265)
Q Consensus 176 d~~~lVSPaDGkV~~~G~I~~ 196 (265)
++..++||+||+|....++.+
T Consensus 11 ~~~~i~aP~~G~vv~l~~v~D 31 (162)
T 1ax3_A 11 GEEVFVSPITGEIHPITDVPD 31 (162)
T ss_dssp CCSSCCCCCSEEEEEGGGSSS
T ss_pred CCCEEEecCceEEEEeEECCC
Confidence 445688999999988766553
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.46 E-value=20 Score=26.61 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=12.1
Q ss_pred ceeeechhHHHHHHHHHHH
Q 024609 55 NTFLLPGATFATLLMLGAL 73 (265)
Q Consensus 55 ~~~~~~~~t~~~i~~lg~~ 73 (265)
+...+.+.++++|+++|++
T Consensus 9 n~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHH
Confidence 4455556666777777753
No 4
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=31.58 E-value=13 Score=30.86 Aligned_cols=19 Identities=21% Similarity=0.573 Sum_probs=15.4
Q ss_pred CeeEecCCceEEEeeeecC
Q 024609 178 HCLVSPVDGIVLRVGELKG 196 (265)
Q Consensus 178 ~~lVSPaDGkV~~~G~I~~ 196 (265)
..++||+||+|....++.+
T Consensus 8 ~~i~aP~~G~vv~l~~v~D 26 (154)
T 2gpr_A 8 LKVLAPCDGTIITLDEVED 26 (154)
T ss_dssp EEEECSSSEEEECGGGSSC
T ss_pred CEEEecCCeEEEEeeECCC
Confidence 4699999999998776654
No 5
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=31.01 E-value=14 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=18.6
Q ss_pred hhhhcCC-CCCCcCCCCCCeeEecCCceEEE
Q 024609 161 FFVRTLK-QGSRPIDPDPHCLVSPVDGIVLR 190 (265)
Q Consensus 161 FFtRkLK-pgaRPId~d~~~lVSPaDGkV~~ 190 (265)
.|..++- .|. -|.+.++.++||+||+|..
T Consensus 28 vf~~~~~G~Gi-ai~p~~~~v~AP~~G~V~~ 57 (154)
T 2gpr_A 28 VFKERMLGDGF-AINPKSNDFHAPVSGKLVT 57 (154)
T ss_dssp HHHTTSSCEEE-EEEESSSEEECSSCEEEEE
T ss_pred cccccceeCeE-EEEeCCCcEECCCCeEEEE
Confidence 4555443 332 2333446899999999986
No 6
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=28.21 E-value=19 Score=30.17 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=20.0
Q ss_pred hhhhhcCC-CCCCcCCCCCCeeEecCCceEEEe
Q 024609 160 EFFVRTLK-QGSRPIDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 160 dFFtRkLK-pgaRPId~d~~~lVSPaDGkV~~~ 191 (265)
++|..+.- .|. -|.+.+..+.||+||+|...
T Consensus 32 ~vfs~~~~G~Gi-ai~p~~~~v~AP~~G~V~~v 63 (161)
T 1f3z_A 32 VVFAEKIVGDGI-AIKPTGNKMVAPVDGTIGKI 63 (161)
T ss_dssp HHHHTTSSCEEE-EEEECSSEEECSSSEEEEEE
T ss_pred ccccccceeCeE-EEEeCCCcEECCCCeEEEEE
Confidence 35665543 332 23344468999999999865
No 7
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=26.28 E-value=21 Score=29.79 Aligned_cols=31 Identities=35% Similarity=0.558 Sum_probs=20.0
Q ss_pred hhhhhcCC-CCCCcCCCCCCeeEecCCceEEEe
Q 024609 160 EFFVRTLK-QGSRPIDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 160 dFFtRkLK-pgaRPId~d~~~lVSPaDGkV~~~ 191 (265)
++|..++- .|. -|.+....+.||+||+|...
T Consensus 32 ~vfs~~~~G~Gi-ai~p~~~~v~AP~~G~V~~v 63 (162)
T 1ax3_A 32 QVFSGKMMGDGF-AILPSEGIVVSPVRGKILNV 63 (162)
T ss_dssp HHHHTCTTSEEE-EEEECSSEEEESCCEEEEEC
T ss_pred ccccccceeceE-EEEeCCCcEECCCCeEEEEE
Confidence 35665544 332 23344568999999999865
No 8
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=13.76 E-value=2.2e+02 Score=19.16 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCCcCCCCCCeeEecCCceEEEee
Q 024609 169 GSRPIDPDPHCLVSPVDGIVLRVG 192 (265)
Q Consensus 169 gaRPId~d~~~lVSPaDGkV~~~G 192 (265)
|++|- +...|.||++|+|...-
T Consensus 2 ~~~~~--~~~~v~a~~~G~v~~~~ 23 (77)
T 1dcz_A 2 GAGKA--GEGEIPAPLAGTVSKIL 23 (77)
T ss_dssp CSSCC--CSSEEEBSSSCEEEEEC
T ss_pred CCCcC--CCeEEECCCCEEEEEEE
Confidence 56663 34579999999998764
No 9
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=12.60 E-value=3.8e+02 Score=18.78 Aligned_cols=59 Identities=19% Similarity=0.391 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeec
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
+.-+.+.|++++++ ++|.|++-|....|.. -|-..+ .+ -.+|-...+-.+++ ..|.+|+
T Consensus 19 l~dl~~~l~~~l~~-----~~~~Tl~G~i~~~lg~--iP~~Gd--~v--~~~~~~f~V~~~~~--~rI~~v~ 77 (81)
T 3lae_A 19 LRDLNKMFNWELDT-----EDARTFNGLILEHLEE--IPDEGT--IC--EIDGLLITILEVGD--NMIKQAK 77 (81)
T ss_dssp HHHHHHHHCCCCCC-----SSCSBHHHHHHHHCSS--CCCTTC--EE--EETTEEEEEEEEET--TEEEEEE
T ss_pred HHHHHHHhCCCCCC-----CCCccHHHHHHHHhCC--CCCCCC--EE--EECCEEEEEEEeeC--CEEEEEE
Confidence 46788999999864 4799999999999852 344322 22 24565555555554 3554443
No 10
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=11.75 E-value=4.3e+02 Score=18.87 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeec
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
+.-+.+.+++++.+ +.|.|++-|....|.. -|-.. + .+.-+.+|-...+-.+++ ..|.+|+
T Consensus 26 l~dl~~~l~~~l~~-----~~~~TlgG~i~~~lg~--iP~~G-d-~v~~~~~~~~f~V~~~~~--~rI~~v~ 86 (93)
T 2r2z_A 26 IDEFNEVFETDLHM-----SDVDTMAGYLITALGT--IPDEG-E-KPSFEVGNIKLTAEEMEG--TRLLVLR 86 (93)
T ss_dssp HHHHHHHHTCCCCC-----TTCCBHHHHHHHHHSS--CCCTT-C-CCEEEETTEEEEEEEEET--TEEEEEE
T ss_pred HHHHHHHhCCCCCC-----CCcccHHHHHHHHhCC--CCCCC-C-EEEEecCCEEEEEEEeeC--CEEEEEE
Confidence 47788999999865 4699999999998862 34332 2 333344666555555654 3555554
Done!