Query 024609
Match_columns 265
No_of_seqs 223 out of 987
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 11:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024609.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024609hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gpra_ b.84.3.1 (A:) Glucose 62.5 2.1 0.00015 33.8 2.8 18 173-190 40-57 (154)
2 d2f3ga_ b.84.3.1 (A:) Glucose- 60.8 1.3 9.1E-05 35.0 1.1 31 160-191 21-52 (150)
3 d1gpra_ b.84.3.1 (A:) Glucose 58.0 1.5 0.00011 34.8 1.1 19 173-191 42-60 (158)
4 d3ci0k1 a.60.16.1 (K:204-274) 22.0 20 0.0014 24.6 1.9 30 136-165 15-51 (71)
5 d1ci3m2 b.84.2.2 (M:170-231) C 18.7 40 0.0029 21.7 2.9 26 179-205 2-27 (62)
6 d2nqwa1 d.145.1.4 (A:4-90) Hyp 17.4 96 0.007 20.7 4.9 64 134-205 19-82 (87)
7 d2rk5a1 d.145.1.4 (A:5-88) Put 16.0 1.4E+02 0.01 19.4 6.2 30 134-168 16-45 (84)
8 d2r2za1 d.145.1.4 (A:5-88) Put 13.2 1.8E+02 0.013 19.1 6.2 61 134-205 19-79 (84)
9 d2o1ra1 d.145.1.4 (A:1-78) Hyp 10.1 2.2E+02 0.016 18.3 6.6 59 134-205 16-74 (78)
10 d1jyra_ d.93.1.1 (A:) Growth f 9.4 78 0.0057 21.6 2.3 67 143-215 10-77 (96)
No 1
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=62.51 E-value=2.1 Score=33.78 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=14.5
Q ss_pred CCCCCCeeEecCCceEEE
Q 024609 173 IDPDPHCLVSPVDGIVLR 190 (265)
Q Consensus 173 Id~d~~~lVSPaDGkV~~ 190 (265)
|.+.++.++|||||+|..
T Consensus 40 I~P~~~~v~AP~dG~I~~ 57 (154)
T d2gpra_ 40 INPKSNDFHAPVSGKLVT 57 (154)
T ss_dssp EEESSSEEECSSCEEEEE
T ss_pred EEecCCEEEEecCeEEEE
Confidence 445567899999999995
No 2
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=60.81 E-value=1.3 Score=34.97 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=19.8
Q ss_pred hhhhhcCC-CCCCcCCCCCCeeEecCCceEEEe
Q 024609 160 EFFVRTLK-QGSRPIDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 160 dFFtRkLK-pgaRPId~d~~~lVSPaDGkV~~~ 191 (265)
+-|.-++- +|. -|.+.++.++|||||+|...
T Consensus 21 ~vFs~~~mG~Gv-AI~P~~~~v~AP~dG~V~~v 52 (150)
T d2f3ga_ 21 VVFAEKIVGDGI-AIKPTGNKMVAPVDGTIGKI 52 (150)
T ss_dssp HHHHTTSSCEEE-EEEECSSEEECSSSEEEEEE
T ss_pred hHHhcCCccCeE-EEEeCCCeEEeecCEEEEEE
Confidence 34444443 332 34455678999999999964
No 3
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=57.99 E-value=1.5 Score=34.79 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=15.0
Q ss_pred CCCCCCeeEecCCceEEEe
Q 024609 173 IDPDPHCLVSPVDGIVLRV 191 (265)
Q Consensus 173 Id~d~~~lVSPaDGkV~~~ 191 (265)
|.+..+.++|||||+|...
T Consensus 42 I~P~~~~v~AP~~G~I~~i 60 (158)
T d1gpra_ 42 ILPSEGIVVSPVRGKILNV 60 (158)
T ss_dssp EEESSCEEECSSSEEEEEE
T ss_pred EEEcCCEEEEeeCeEEEEE
Confidence 4455678999999999764
No 4
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=21.95 E-value=20 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=17.4
Q ss_pred HHHHHh--CCCccccc-----CCccccCchhhhhhhc
Q 024609 136 AWARAF--HSNLEEAA-----LPLGEYASLREFFVRT 165 (265)
Q Consensus 136 ~fik~f--~IdL~E~~-----~pl~~Y~SfndFFtRk 165 (265)
..+-.| ++++++++ .|.++|.|.+|||.-.
T Consensus 15 LL~Alf~~~ls~~~A~~li~~RP~~Gw~sv~~F~~~~ 51 (71)
T d3ci0k1 15 ILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQP 51 (71)
T ss_dssp HHHHHTC-------CCHHHHTCCTTCCSCHHHHHTSG
T ss_pred HHHHHhcCCCCHHHHHHHHHhCCcchhhhHHHHHhCh
Confidence 444555 47777775 3789999999999643
No 5
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=18.73 E-value=40 Score=21.70 Aligned_cols=26 Identities=8% Similarity=0.285 Sum_probs=17.9
Q ss_pred eeEecCCceEEEeeeecCCCceeEeec
Q 024609 179 CLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 179 ~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
+..|+++|+|+.++..++....| .|.
T Consensus 2 v~~A~~~G~V~~i~~~~~g~~~I-~I~ 27 (62)
T d1ci3m2 2 VYNASAAGVITAIAKADDGSAEV-KIR 27 (62)
T ss_dssp CCBCSSCEEEEEEEECTTSCEEE-EEE
T ss_pred eEeCccCEEEEEeEeccCCCEEE-EEE
Confidence 35689999999988776533333 554
No 6
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=17.36 E-value=96 Score=20.66 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeec
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
+.-+.+.+++++.+...+-++|.|++-|....+.. -|-.. + .+ -.+|--..+-.+++ ..|.+||
T Consensus 19 l~dl~~~l~~~l~~~~~~~~~~~Ti~G~i~~~lg~--iP~~G-e-~v--~~~~~~f~V~~~~~--~rI~~V~ 82 (87)
T d2nqwa1 19 LSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQE--LPHVG-D-TA--VYEPFRFQVTQMDK--RRIIEIK 82 (87)
T ss_dssp HHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHHCS--CCCTT-C-EE--EETTEEEEEEEECS--SSEEEEE
T ss_pred HHHHHHHhCCCcccccCcccceeeHHHHHHHHhCc--cccCC-e-EE--EECCEEEEEEEccC--CeEEEEE
Confidence 57788999999976544447899999999999863 33322 2 22 23555555555554 3555655
No 7
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=16.01 E-value=1.4e+02 Score=19.44 Aligned_cols=30 Identities=13% Similarity=0.409 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCCC
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQ 168 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKp 168 (265)
+.-+.+.|++++++ ++|.|++-|...+|..
T Consensus 16 l~dl~~~l~~~l~~-----~~~dTlgG~v~~~lg~ 45 (84)
T d2rk5a1 16 LNDFNEYFETDLES-----DNVDTIAGFYLTGVGT 45 (84)
T ss_dssp HHHHHHHHTCCCCC-----TTCCBHHHHHHHHHCS
T ss_pred HHHHHHHhCCCccc-----ccchhHHHHHHHHhCc
Confidence 47788999999865 4799999999999864
No 8
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=13.21 E-value=1.8e+02 Score=19.11 Aligned_cols=61 Identities=15% Similarity=0.302 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeec
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
+.-+.+.+++++++ ++|.|++-|....+.. -|-. ++ .++-..+|--..+-.+++ ..|.+||
T Consensus 19 l~dl~~~l~~~l~~-----~~~~TigG~i~~~lg~--iP~~-Ge-~~~i~~~~~~f~V~~~~~--~rI~~v~ 79 (84)
T d2r2za1 19 IDEFNEVFETDLHM-----SDVDTMAGYLITALGT--IPDE-GE-KPSFEVGNIKLTAEEMEG--TRLLVLR 79 (84)
T ss_dssp HHHHHHHHTCCCCC-----TTCCBHHHHHHHHHSS--CCCT-TC-CCEEEETTEEEEEEEEET--TEEEEEE
T ss_pred HHHHHHHHCcCCCC-----ccchhHHHHHHHHhCc--CCCC-CC-EEEEEECCEEEEEEEccC--CeEEEEE
Confidence 46788899999875 4799999999999853 3322 22 233344565454445554 4555554
No 9
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=10.11 E-value=2.2e+02 Score=18.31 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeec
Q 024609 134 YKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVK 205 (265)
Q Consensus 134 ik~fik~f~IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVK 205 (265)
+.-+.+.+++++++ ++|.|++-|....|. .-|-. ++ .+.. +|--...=.+++ ..|.+||
T Consensus 16 l~dl~~~l~~~l~~-----~~~~Ti~G~v~~~lg--~iP~~-Ge-~v~~--~~~~f~V~~~~~--~rI~~V~ 74 (78)
T d2o1ra1 16 LRDLNKMFNWELDT-----EDARTFNGLILEHLE--EIPDE-GT-ICEI--DGLLITILEVGD--NMIKQAK 74 (78)
T ss_dssp HHHHHHHHCCCCCC-----SSCSBHHHHHHHHCS--SCCCT-TC-EEEE--TTEEEEEEEEET--TEEEEEE
T ss_pred HHHHHHHHCCCCCC-----ccchHHHHHHHHHhC--cCCCC-CC-EEEE--CCEEEEEEEccC--CeEEEEE
Confidence 47778999999876 479999999999985 24432 22 2222 454444444554 3555554
No 10
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.41 E-value=78 Score=21.56 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCcccccCCccccCchhhhhhhcCCCCCCcCCCCCCeeEecCCceEEEeeeecCCCceeEeecCCcc-chhhhc
Q 024609 143 SNLEEAALPLGEYASLREFFVRTLKQGSRPIDPDPHCLVSPVDGIVLRVGELKGVGAMIEQVKGFSY-SVSSLL 215 (265)
Q Consensus 143 IdL~E~~~pl~~Y~SfndFFtRkLKpgaRPId~d~~~lVSPaDGkV~~~G~I~~~~~~ieqVKG~tY-SL~~LL 215 (265)
|+=+||+.-|..-..=..|-.|.=.. .++.-+|.-=++++|.++-...++++.+ .+.+..| ||.+|+
T Consensus 10 isR~~Ae~lL~~~~~~G~FLvR~S~~-----~~g~~~LSv~~~~~v~H~~I~~~~~g~~-~~~~~~F~sl~~LV 77 (96)
T d1jyra_ 10 IPRAKAEEMLSKQRHDGAFLIRESES-----APGDFSLSVKFGNDVQHFKVLRDGAGKY-FLWVVKFNSLNELV 77 (96)
T ss_dssp CCHHHHHHHHHTCCSTTBEEEEECSS-----STTCEEEEEEETTEEEEEECEECTTSCE-ESSSCEESSHHHHH
T ss_pred CCHHHHHHHHhhCCCCCeEEEEecCC-----CCCCEEEEEEeCCceEEEEEEECCCCeE-EeCCccCCCHHHHH
Confidence 35556654354444567888887321 2233456566788999887433333344 6788777 899998
Done!