BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024610
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18496|ATP10_YEAST Mitochondrial ATPase complex subunit ATP10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ATP10 PE=1
SV=2
Length = 279
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 47/246 (19%)
Query: 34 AQKSSTRFLDIYQLGNKQAVEKERAR---LADEMNRGYFADVAELKKHGGKIATANKIII 90
A + ST++ L + EK R LA E ++ DV +K GK+ A
Sbjct: 49 APRKSTKYSQGNSLRDMFDSEKTNHRVKELAVEFSKSGLYDVQVFQKTKGKLFIAPVSYW 108
Query: 91 PALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW 150
A+ FP L + D T + N + K S+V R S A D
Sbjct: 109 KEDKALFFPHLIGTAMDGTKQQ----------NIEDMLRGKTSIV----RLFSTASGDKL 154
Query: 151 SSPFFEAFSDSK------------------NVHLYEVSFIDSWLLCRSPIKRILLKIMRK 192
SS +F+ D NV + EV+ +++ +K L+K +
Sbjct: 155 SSSYFQGIVDDNKKTDYLTEADARLSLNDSNVQIIEVNLVEN------AVKSALVKTL-- 206
Query: 193 SKDAGENVLQRQIVY---SFGDH-YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATP 248
++ A RQ Y S G + R+EL N+ +GY+FL+D+ +IRW G ATP
Sbjct: 207 ARWANRVPSWRQPFYFECSRGQWPFSVREELFCNNVFSGYVFLVDQQLKIRWAACGEATP 266
Query: 249 EELSSL 254
E +L
Sbjct: 267 SEKEAL 272
>sp|Q757F3|ATP10_ASHGO Mitochondrial ATPase complex subunit ATP10 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ATP10 PE=3 SV=2
Length = 272
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 42/239 (17%)
Query: 37 SSTRFLD---IYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPAL 93
++TR+++ + + +++ + A LA E ++ D A +K G++ A
Sbjct: 49 AATRYVEGNSMLDMFSEEKTSRRAAELAAEFSKSGLYDAATFRKTNGRVFLPPASYWRAE 108
Query: 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP 153
A FP L RT +G + + KVS+V + + + + S+
Sbjct: 109 HARYFPHL----GGRTL-------TGARGSVEDVLAGKVSVVKVFSCETGEGLASSYFRH 157
Query: 154 FFEAF---SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG 210
+ D + E+S +SW IK L+++M AG R +V +
Sbjct: 158 EGHDYLREDDVAPAQIVEISLTESW------IKDWLVRLM-----AGR---LRSLVPAAR 203
Query: 211 DHYYF-----------RKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCT 258
YF R+ L++ NL TGY+ ++D +IRW G A + L C
Sbjct: 204 HERYFICRRAQLPFTVRESLELGNLYTGYVLVVDPQLKIRWMACGGAEKRDAELLWKCV 262
>sp|Q823U8|EX7L_CHLCV Exodeoxyribonuclease 7 large subunit OS=Chlamydophila caviae
(strain GPIC) GN=xseA PE=3 SV=1
Length = 555
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 55 KERARLADEMNRGYFADVAELKKHGGKI----ATANKIIIPALAAVKFP 99
KE +R +EMN+ ADV L + GG I A +II+ A+AA P
Sbjct: 181 KEISRAIEEMNKENLADVLILARGGGSIEDLWAFNEEIIVKAIAASSIP 229
>sp|Q116J2|PHS_TRIEI Putative pterin-4-alpha-carbinolamine dehydratase OS=Trichodesmium
erythraeum (strain IMS101) GN=Tery_1232 PE=3 SV=1
Length = 93
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 86 NKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANAD 125
NK++ PA A+ PDL+VSY ++ T+ L +SG + D
Sbjct: 44 NKLVAPAEASQHHPDLEVSY-NKVTIILTTHNSGGLTEKD 82
>sp|Q6FWV2|ATP10_CANGA Mitochondrial ATPase complex subunit ATP10 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=ATP10 PE=3 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 48/245 (19%)
Query: 33 YAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPA 92
Y++ +S +LD++ + KE L E + ++A +K GK+ + + A
Sbjct: 56 YSEGNS--WLDLFDGAKTEERIKE---LEIEFAKSGMYEMATFRKTNGKLFLSPESYWKA 110
Query: 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS 152
A+ FP L S RT SS D N + K S++ R S + D S
Sbjct: 111 DKALYFPHL----SGRT------LSSEDHGNVEDVLRGKTSVI----RVFSTQVGDKISR 156
Query: 153 PFFEAFS------DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIV 206
+ + ++++ + +++F+++ +K L K+ N L+ +
Sbjct: 157 EYIKNTELGIDNYENQSCQVIDINFLEN------KLKSWLFKL-------SLNNLKSTVP 203
Query: 207 YSFGDHYYF----------RKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256
D+Y+ R+ L I N+ +GYIF++D +IR+ G A+ +E + L
Sbjct: 204 VQRHDNYWLCHREQIPFLMRERLLINNVYSGYIFVVDPNLKIRFMACGPASADEFNKLWK 263
Query: 257 CTSLL 261
L
Sbjct: 264 VVGQL 268
>sp|P39187|YTFJ_ECOLI Uncharacterized protein YtfJ OS=Escherichia coli (strain K12)
GN=ytfJ PE=1 SV=1
Length = 184
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 229 IFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263
+ +LDK GR++W G TPEE+ ++ LL+
Sbjct: 150 VVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK 184
>sp|Q17CE7|S35B3_AEDAE Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Aedes
aegypti GN=Papst2 PE=3 SV=1
Length = 382
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 16/86 (18%)
Query: 145 AMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQ 204
+ DS SP F F V I LLC + I + K MR+ K V
Sbjct: 188 TLADSQVSPNFNPFG---------VLLISLALLCDAAIGNVQEKAMREHKAPNNEV---- 234
Query: 205 IVYSFGDHYYFRKELKILNLLTGYIF 230
++YS+G + + L ++ LLTG +F
Sbjct: 235 VIYSYGIGFVY---LSVIMLLTGNLF 257
>sp|Q7VKS7|Y1794_HAEDU UPF0301 protein HD_1794 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=HD_1794 PE=1 SV=1
Length = 186
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 100 DLDVSYSDRTTLKLPVCSSGDVANA-DKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAF 158
D + ++S + T + + +SGDV ++ P+ +VCL ++ + +
Sbjct: 91 DHEFTHSYKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLL 150
Query: 159 SDSKNVHLYEVSFIDSWL 176
S++ N L+E S++D W+
Sbjct: 151 SEANNQTLFETSYLDRWV 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,873,643
Number of Sequences: 539616
Number of extensions: 3672533
Number of successful extensions: 8359
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8355
Number of HSP's gapped (non-prelim): 11
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)