Query 024610
Match_columns 265
No_of_seqs 140 out of 193
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05176 ATP-synt_10: ATP10 pr 100.0 2.2E-67 4.7E-72 475.6 18.5 225 19-261 23-252 (252)
2 KOG4614 Inner membrane protein 100.0 4.8E-40 1E-44 289.8 4.7 245 1-265 2-287 (287)
3 PF08534 Redoxin: Redoxin; In 99.0 6.4E-09 1.4E-13 85.1 11.3 115 95-247 3-136 (146)
4 PRK15412 thiol:disulfide inter 99.0 4.6E-09 1E-13 90.6 10.9 127 92-256 39-173 (185)
5 TIGR01626 ytfJ_HI0045 conserve 98.9 1.8E-08 3.8E-13 87.8 12.2 138 96-263 27-184 (184)
6 cd03010 TlpA_like_DsbE TlpA-li 98.9 2.3E-08 5E-13 80.1 10.2 116 97-251 2-126 (127)
7 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 1.2E-08 2.5E-13 80.6 7.7 108 96-241 3-124 (124)
8 PRK03147 thiol-disulfide oxido 98.8 8.9E-08 1.9E-12 80.2 11.9 128 92-258 35-171 (173)
9 TIGR00385 dsbE periplasmic pro 98.8 1.1E-07 2.5E-12 80.9 12.4 127 94-256 36-168 (173)
10 PRK09437 bcp thioredoxin-depen 98.8 1.2E-07 2.6E-12 78.5 11.5 125 95-259 7-153 (154)
11 TIGR02661 MauD methylamine deh 98.7 1.5E-07 3.3E-12 81.6 11.0 126 93-259 47-179 (189)
12 cd03017 PRX_BCP Peroxiredoxin 98.7 1.1E-07 2.5E-12 76.8 9.6 120 97-254 2-138 (140)
13 cd03014 PRX_Atyp2cys Peroxired 98.7 1.9E-07 4.1E-12 76.2 10.2 117 95-248 3-132 (143)
14 cd02971 PRX_family Peroxiredox 98.7 2.1E-07 4.5E-12 75.1 9.8 114 97-247 1-131 (140)
15 PTZ00056 glutathione peroxidas 98.6 3.2E-07 6.9E-12 80.4 10.4 61 91-172 12-81 (199)
16 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 3.6E-07 7.8E-12 72.3 9.7 113 99-253 1-120 (123)
17 cd03018 PRX_AhpE_like Peroxire 98.6 4.9E-07 1.1E-11 73.9 10.5 114 95-246 4-134 (149)
18 cd02969 PRX_like1 Peroxiredoxi 98.6 5.3E-07 1.2E-11 76.1 10.7 132 96-264 2-154 (171)
19 PLN02412 probable glutathione 98.6 9.3E-07 2E-11 75.2 11.6 137 93-264 4-166 (167)
20 cd00340 GSH_Peroxidase Glutath 98.6 1.8E-07 4E-12 77.8 7.1 121 98-253 2-150 (152)
21 cd02968 SCO SCO (an acronym fo 98.5 4.6E-07 1E-11 73.3 8.4 112 98-244 2-142 (142)
22 PRK00522 tpx lipid hydroperoxi 98.5 1.5E-06 3.2E-11 73.8 11.8 128 94-258 20-165 (167)
23 PRK14018 trifunctional thiored 98.5 1.4E-06 3.1E-11 86.6 12.5 128 96-259 36-173 (521)
24 cd03015 PRX_Typ2cys Peroxiredo 98.5 1.7E-06 3.7E-11 73.5 10.8 119 96-245 3-139 (173)
25 cd02970 PRX_like2 Peroxiredoxi 98.4 1.1E-06 2.5E-11 71.2 9.0 112 98-245 2-149 (149)
26 PTZ00256 glutathione peroxidas 98.4 2.3E-06 5E-11 73.7 10.8 134 95-262 17-181 (183)
27 PLN02399 phospholipid hydroper 98.4 3.9E-06 8.4E-11 75.8 11.9 138 90-262 71-234 (236)
28 TIGR02540 gpx7 putative glutat 98.4 3.6E-06 7.7E-11 70.0 10.6 123 98-254 2-148 (153)
29 PF13905 Thioredoxin_8: Thiore 98.4 3E-06 6.5E-11 64.3 8.7 82 130-238 1-95 (95)
30 cd02966 TlpA_like_family TlpA- 98.3 5.9E-06 1.3E-10 62.5 9.7 106 101-244 2-116 (116)
31 cd02967 mauD Methylamine utili 98.3 4.1E-06 8.8E-11 65.4 8.7 103 99-242 1-112 (114)
32 PRK13599 putative peroxiredoxi 98.2 1.1E-05 2.4E-10 71.7 10.4 136 94-261 4-155 (215)
33 cd03012 TlpA_like_DipZ_like Tl 98.2 1.4E-05 3E-10 64.2 10.0 93 128-245 21-125 (126)
34 PRK13190 putative peroxiredoxi 98.2 3.1E-05 6.7E-10 67.9 12.8 136 94-262 4-154 (202)
35 cd03016 PRX_1cys Peroxiredoxin 98.2 1.4E-05 3.1E-10 70.0 10.0 133 96-261 3-153 (203)
36 cd03009 TryX_like_TryX_NRX Try 98.1 1.4E-05 3E-10 64.3 8.4 102 104-243 4-117 (131)
37 PRK13728 conjugal transfer pro 98.1 6.9E-05 1.5E-09 65.2 12.8 136 67-255 21-167 (181)
38 PRK13189 peroxiredoxin; Provis 98.1 3.8E-05 8.2E-10 68.5 11.4 121 94-246 11-146 (222)
39 PRK13191 putative peroxiredoxi 98.1 3.6E-05 7.8E-10 68.4 10.5 136 94-261 9-160 (215)
40 TIGR03137 AhpC peroxiredoxin. 98.0 6.5E-05 1.4E-09 64.9 11.1 116 95-244 5-137 (187)
41 PLN02919 haloacid dehalogenase 98.0 7.2E-05 1.6E-09 80.4 13.1 131 92-258 391-535 (1057)
42 PF09695 YtfJ_HI0045: Bacteria 97.9 0.0002 4.4E-09 60.9 11.7 145 97-259 6-158 (160)
43 cd02964 TryX_like_family Trypa 97.9 0.00011 2.4E-09 59.5 9.6 90 128-244 15-118 (132)
44 cd03008 TryX_like_RdCVF Trypar 97.9 6.6E-05 1.4E-09 63.1 8.2 91 127-241 22-128 (146)
45 PTZ00137 2-Cys peroxiredoxin; 97.9 0.0002 4.4E-09 65.6 11.8 121 93-243 69-205 (261)
46 PRK15000 peroxidase; Provision 97.8 0.00019 4.1E-09 63.0 11.0 140 95-261 5-161 (200)
47 PTZ00253 tryparedoxin peroxida 97.8 0.0003 6.6E-09 61.3 11.1 134 95-260 9-162 (199)
48 PRK10382 alkyl hydroperoxide r 97.6 0.00059 1.3E-08 59.5 10.0 120 94-245 4-138 (187)
49 TIGR02738 TrbB type-F conjugat 97.6 0.00045 9.7E-09 58.4 9.0 88 130-254 50-148 (153)
50 cd02950 TxlA TRX-like protein 97.4 0.0012 2.6E-08 54.8 9.2 82 129-257 19-108 (142)
51 PF02630 SCO1-SenC: SCO1/SenC; 97.3 0.0021 4.6E-08 55.0 10.0 123 94-240 28-169 (174)
52 COG1225 Bcp Peroxiredoxin [Pos 97.2 0.0056 1.2E-07 52.2 11.2 129 95-261 7-155 (157)
53 TIGR02740 TraF-like TraF-like 97.1 0.0027 5.9E-08 58.4 9.4 93 126-256 162-261 (271)
54 PRK10606 btuE putative glutath 97.1 0.0071 1.5E-07 52.6 11.1 54 97-172 4-66 (183)
55 COG0450 AhpC Peroxiredoxin [Po 96.8 0.025 5.4E-07 49.8 11.5 133 95-258 6-157 (194)
56 cd02953 DsbDgamma DsbD gamma f 96.7 0.0065 1.4E-07 46.8 7.0 40 213-254 62-102 (104)
57 cd02951 SoxW SoxW family; SoxW 96.6 0.017 3.8E-07 45.9 8.8 93 129-257 12-117 (125)
58 COG1999 Uncharacterized protei 96.5 0.037 8.1E-07 48.9 11.3 136 91-256 39-201 (207)
59 cd02985 TRX_CDSP32 TRX family, 96.2 0.036 7.7E-07 43.0 8.5 76 129-252 14-96 (103)
60 PHA02278 thioredoxin-like prot 96.0 0.059 1.3E-06 42.4 8.6 81 129-255 13-101 (103)
61 PF13098 Thioredoxin_2: Thiore 96.0 0.027 6E-07 43.5 6.7 97 129-254 4-111 (112)
62 cd03013 PRX5_like Peroxiredoxi 95.5 0.15 3.2E-06 42.8 9.8 124 96-247 3-142 (155)
63 cd02999 PDI_a_ERp44_like PDIa 95.0 0.12 2.6E-06 40.0 7.3 36 213-252 62-97 (100)
64 TIGR01295 PedC_BrcD bacterioci 94.9 0.24 5.2E-06 40.0 9.1 90 129-255 22-120 (122)
65 cd02956 ybbN ybbN protein fami 94.8 0.44 9.4E-06 35.7 9.6 41 212-255 55-95 (96)
66 COG3054 Predicted transcriptio 94.7 0.12 2.5E-06 44.2 6.7 125 128-263 57-184 (184)
67 PRK09381 trxA thioredoxin; Pro 94.4 0.85 1.9E-05 35.0 10.6 41 213-256 65-105 (109)
68 PRK00293 dipZ thiol:disulfide 94.2 0.2 4.4E-06 50.7 8.5 43 213-257 524-568 (571)
69 cd02955 SSP411 TRX domain, SSP 93.4 0.19 4.1E-06 41.0 5.6 27 225-251 80-106 (124)
70 TIGR01126 pdi_dom protein disu 93.3 0.99 2.1E-05 33.5 9.0 40 212-254 58-97 (102)
71 PRK10996 thioredoxin 2; Provis 93.1 1.5 3.3E-05 35.9 10.5 42 212-256 95-136 (139)
72 cd02961 PDI_a_family Protein D 92.9 0.83 1.8E-05 33.3 7.9 40 212-253 60-99 (101)
73 PLN00410 U5 snRNP protein, DIM 92.7 1.5 3.2E-05 36.8 10.0 43 213-257 67-118 (142)
74 cd02997 PDI_a_PDIR PDIa family 92.5 1.4 3E-05 33.0 8.9 38 212-252 64-101 (104)
75 cd02947 TRX_family TRX family; 92.2 2.1 4.6E-05 30.3 9.2 40 212-254 52-91 (93)
76 cd02949 TRX_NTR TRX domain, no 91.2 3 6.5E-05 31.4 9.5 39 213-254 57-95 (97)
77 cd02948 TRX_NDPK TRX domain, T 91.1 3.2 6.9E-05 31.8 9.6 37 212-252 60-96 (102)
78 cd02952 TRP14_like Human TRX-r 90.9 0.95 2.1E-05 36.7 6.7 43 130-174 21-71 (119)
79 cd02963 TRX_DnaJ TRX domain, D 90.9 3.3 7.2E-05 32.3 9.7 39 213-254 69-107 (111)
80 TIGR01068 thioredoxin thioredo 90.7 4.2 9.2E-05 29.8 9.8 43 210-255 55-97 (101)
81 cd02954 DIM1 Dim1 family; Dim1 90.1 3.3 7.1E-05 33.4 9.1 32 213-247 58-89 (114)
82 PTZ00051 thioredoxin; Provisio 89.3 2.5 5.3E-05 31.5 7.5 37 213-253 61-97 (98)
83 cd03005 PDI_a_ERp46 PDIa famil 88.4 3.5 7.6E-05 30.7 7.8 37 214-253 64-100 (102)
84 KOG1651 Glutathione peroxidase 88.3 1.3 2.8E-05 38.3 5.8 32 93-136 9-40 (171)
85 PF02484 Rhabdo_NV: Rhabdoviru 88.0 0.32 7E-06 37.9 1.8 39 210-249 8-46 (111)
86 cd02959 ERp19 Endoplasmic reti 87.9 1.8 3.8E-05 34.6 6.2 22 218-239 69-90 (117)
87 cd03004 PDI_a_ERdj5_C PDIa fam 87.8 7.4 0.00016 29.3 9.4 39 212-252 62-101 (104)
88 cd02984 TRX_PICOT TRX domain, 87.6 5.7 0.00012 29.4 8.5 37 213-253 58-94 (97)
89 cd03000 PDI_a_TMX3 PDIa family 87.5 6.1 0.00013 30.1 8.8 40 213-256 62-101 (104)
90 cd02975 PfPDO_like_N Pyrococcu 87.0 8.8 0.00019 30.2 9.7 42 213-258 65-109 (113)
91 cd02994 PDI_a_TMX PDIa family, 86.5 6.6 0.00014 29.4 8.4 38 213-254 61-98 (101)
92 cd03002 PDI_a_MPD1_like PDI fa 86.2 6.4 0.00014 29.8 8.3 38 213-252 64-105 (109)
93 cd02989 Phd_like_TxnDC9 Phosdu 85.5 4.9 0.00011 31.7 7.5 28 215-245 67-94 (113)
94 KOG0907 Thioredoxin [Posttrans 84.7 1.4 3E-05 35.0 3.9 35 130-173 21-62 (106)
95 cd02998 PDI_a_ERp38 PDIa famil 83.8 9.5 0.00021 28.2 8.1 38 213-252 65-102 (105)
96 PF13728 TraF: F plasmid trans 82.2 7.1 0.00015 34.7 7.8 90 128-252 118-211 (215)
97 KOG4614 Inner membrane protein 81.2 0.84 1.8E-05 41.6 1.5 29 53-81 60-88 (287)
98 cd02993 PDI_a_APS_reductase PD 81.0 13 0.00028 28.6 8.1 26 217-244 72-97 (109)
99 cd03003 PDI_a_ERdj5_N PDIa fam 79.7 23 0.0005 26.5 9.2 37 214-253 63-99 (101)
100 cd03065 PDI_b_Calsequestrin_N 79.4 13 0.00027 30.2 7.8 38 213-254 77-114 (120)
101 PTZ00102 disulphide isomerase; 79.3 10 0.00023 36.6 8.6 32 225-256 431-462 (477)
102 PF00085 Thioredoxin: Thioredo 77.7 25 0.00054 25.7 11.0 41 212-255 60-100 (103)
103 smart00594 UAS UAS domain. 74.5 19 0.00042 28.6 7.5 41 212-254 75-120 (122)
104 PF02743 Cache_1: Cache domain 74.0 2.9 6.3E-05 30.5 2.5 24 218-243 47-70 (81)
105 cd02958 UAS UAS family; UAS is 73.2 12 0.00026 29.1 5.9 43 212-256 65-108 (114)
106 COG2077 Tpx Peroxiredoxin [Pos 73.1 39 0.00085 28.9 9.2 119 94-242 20-147 (158)
107 KOG0910 Thioredoxin-like prote 70.8 4.8 0.0001 34.2 3.3 76 130-255 61-144 (150)
108 cd02995 PDI_a_PDI_a'_C PDIa fa 70.6 7.6 0.00017 28.8 4.1 17 130-155 18-34 (104)
109 TIGR02187 GlrX_arch Glutaredox 69.9 40 0.00087 29.4 9.1 43 212-257 66-109 (215)
110 cd02965 HyaE HyaE family; HyaE 68.4 60 0.0013 26.0 9.2 37 213-252 73-109 (111)
111 cd02996 PDI_a_ERp44 PDIa famil 68.0 51 0.0011 25.0 8.8 40 210-252 65-105 (108)
112 cd02986 DLP Dim1 family, Dim1- 68.0 8.4 0.00018 31.2 4.0 37 129-174 13-57 (114)
113 PTZ00443 Thioredoxin domain-co 67.0 67 0.0015 28.8 10.1 39 213-254 96-134 (224)
114 smart00564 PQQ beta-propeller 65.5 6.5 0.00014 23.5 2.3 16 226-241 15-31 (33)
115 TIGR02739 TraF type-F conjugat 65.5 26 0.00056 32.2 7.2 97 128-259 148-249 (256)
116 cd02957 Phd_like Phosducin (Ph 62.4 12 0.00025 29.2 3.8 35 130-173 24-65 (113)
117 COG0386 BtuE Glutathione perox 59.5 14 0.00029 31.8 3.9 33 229-264 130-162 (162)
118 PF13192 Thioredoxin_3: Thiore 58.9 28 0.00061 25.2 5.1 43 206-255 33-75 (76)
119 cd03006 PDI_a_EFP1_N PDIa fami 57.8 18 0.0004 28.7 4.3 37 129-174 28-72 (113)
120 cd02962 TMX2 TMX2 family; comp 57.2 20 0.00043 30.2 4.6 36 130-174 47-91 (152)
121 PF05228 CHASE4: CHASE4 domain 54.6 15 0.00031 29.9 3.3 28 213-240 34-64 (161)
122 KOG2501 Thioredoxin, nucleored 53.1 1.5E+02 0.0032 25.4 9.8 91 122-239 25-129 (157)
123 cd03001 PDI_a_P5 PDIa family, 52.9 89 0.0019 22.9 9.4 38 212-251 61-98 (103)
124 cd02960 AGR Anterior Gradient 49.8 48 0.001 27.3 5.6 22 225-246 79-100 (130)
125 PF13911 AhpC-TSA_2: AhpC/TSA 46.1 14 0.00031 28.7 1.9 19 226-244 95-113 (115)
126 PF00626 Gelsolin: Gelsolin re 44.9 28 0.00061 24.6 3.2 37 225-262 16-53 (76)
127 PF03527 RHS: RHS protein; In 44.4 5.9 0.00013 26.3 -0.5 15 231-245 15-29 (41)
128 cd02987 Phd_like_Phd Phosducin 44.1 33 0.00072 29.3 4.0 26 148-173 92-124 (175)
129 KOG0855 Alkyl hydroperoxide re 43.4 1.9E+02 0.0041 25.5 8.4 116 91-235 62-184 (211)
130 PF01011 PQQ: PQQ enzyme repea 42.5 31 0.00066 21.7 2.7 20 224-243 7-27 (38)
131 PF05935 Arylsulfotrans: Aryls 41.4 19 0.00042 35.6 2.4 32 213-244 110-145 (477)
132 PF00255 GSHPx: Glutathione pe 40.1 32 0.00069 27.4 3.0 57 100-172 3-62 (108)
133 PF08448 PAS_4: PAS fold; Int 39.1 26 0.00056 25.4 2.3 19 226-244 5-23 (110)
134 smart00262 GEL Gelsolin homolo 37.2 77 0.0017 23.3 4.6 37 225-262 24-61 (90)
135 KOG0541 Alkyl hydroperoxide re 37.2 1.2E+02 0.0026 26.2 6.2 107 123-246 36-155 (171)
136 TIGR01130 ER_PDI_fam protein d 35.6 3.2E+02 0.007 25.8 9.8 37 213-252 65-102 (462)
137 COG4316 Uncharacterized protei 34.2 29 0.00062 28.5 1.9 15 234-248 74-88 (138)
138 cd02992 PDI_a_QSOX PDIa family 31.8 75 0.0016 24.8 4.0 17 130-155 19-35 (114)
139 smart00701 PGRP Animal peptido 31.5 31 0.00067 28.6 1.8 19 218-238 57-75 (142)
140 TIGR01130 ER_PDI_fam protein d 31.0 72 0.0016 30.3 4.4 36 129-173 363-409 (462)
141 PF08235 LNS2: LNS2 (Lipin/Ned 30.5 2.7E+02 0.0059 23.7 7.4 99 132-239 44-155 (157)
142 PF13778 DUF4174: Domain of un 30.5 1.2E+02 0.0026 24.2 5.0 42 212-254 66-107 (118)
143 PF00989 PAS: PAS fold; Inter 30.2 44 0.00094 24.3 2.3 18 226-243 11-28 (113)
144 PF13596 PAS_10: PAS domain; P 30.2 44 0.00095 25.1 2.3 16 229-244 12-27 (106)
145 PHA00447 lysozyme 30.1 52 0.0011 27.3 2.9 21 217-239 36-56 (142)
146 cd03026 AhpF_NTD_C TRX-GRX-lik 30.0 2.4E+02 0.0052 21.1 8.4 35 210-251 52-86 (89)
147 PRK13703 conjugal pilus assemb 29.8 2E+02 0.0042 26.4 6.8 81 148-257 155-240 (248)
148 cd02988 Phd_like_VIAF Phosduci 28.7 66 0.0014 28.0 3.4 26 148-173 111-143 (192)
149 PF04592 SelP_N: Selenoprotein 28.1 4.3E+02 0.0093 24.2 8.6 89 128-241 24-125 (238)
150 PF13185 GAF_2: GAF domain; PD 28.1 51 0.0011 25.4 2.4 27 220-246 17-43 (148)
151 KOG0908 Thioredoxin-like prote 27.4 67 0.0015 29.9 3.3 27 148-174 30-63 (288)
152 PF14465 NFRKB_winged: NFRKB W 26.6 83 0.0018 25.0 3.3 33 223-255 65-97 (100)
153 PF00235 Profilin: Profilin; 26.0 77 0.0017 24.8 3.1 43 215-259 6-51 (121)
154 KOG2994 Uracil DNA glycosylase 25.6 43 0.00094 31.1 1.7 34 55-88 81-116 (297)
155 cd02982 PDI_b'_family Protein 25.2 2.7E+02 0.006 20.3 8.4 42 214-255 57-99 (103)
156 cd02973 TRX_GRX_like Thioredox 25.1 1E+02 0.0022 21.0 3.3 25 213-242 42-66 (67)
157 PTZ00062 glutaredoxin; Provisi 25.1 71 0.0015 28.2 3.0 25 148-172 26-57 (204)
158 PF12200 DUF3597: Domain of un 25.1 75 0.0016 26.3 2.9 42 41-82 72-126 (127)
159 PF01453 B_lectin: D-mannose b 24.2 71 0.0015 25.2 2.6 27 220-248 58-84 (114)
160 KOG3559 Transcriptional regula 23.1 61 0.0013 32.1 2.3 19 224-242 87-105 (598)
161 KOG2577 Transcription factor E 23.1 69 0.0015 30.9 2.7 48 217-264 107-159 (354)
162 PF13848 Thioredoxin_6: Thiore 23.0 2.6E+02 0.0057 22.6 6.0 43 212-254 138-181 (184)
163 PF13822 ACC_epsilon: Acyl-CoA 23.0 99 0.0022 22.0 2.9 21 243-263 8-28 (62)
164 PTZ00102 disulphide isomerase; 22.8 6.4E+02 0.014 24.1 9.4 37 212-252 95-131 (477)
165 COG3322 Predicted periplasmic 22.7 60 0.0013 30.5 2.2 19 226-244 104-122 (295)
166 KOG0852 Alkyl hydroperoxide re 22.2 5.5E+02 0.012 22.7 8.0 91 157-259 62-161 (196)
167 smart00775 LNS2 LNS2 domain. T 22.0 1.6E+02 0.0035 24.5 4.5 50 182-239 102-155 (157)
168 PF11009 DUF2847: Protein of u 21.9 98 0.0021 24.7 2.9 32 213-246 67-98 (105)
169 PF08269 Cache_2: Cache domain 21.6 75 0.0016 23.8 2.2 24 217-242 49-72 (95)
170 TIGR00411 redox_disulf_1 small 21.4 2.9E+02 0.0063 19.2 9.4 32 217-255 47-78 (82)
171 PRK11657 dsbG disulfide isomer 21.1 1.1E+02 0.0024 27.6 3.5 43 210-255 206-248 (251)
172 PF13426 PAS_9: PAS domain; PD 20.6 86 0.0019 22.2 2.3 15 229-243 4-18 (104)
No 1
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=100.00 E-value=2.2e-67 Score=475.63 Aligned_cols=225 Identities=33% Similarity=0.496 Sum_probs=198.4
Q ss_pred hhhhcCCCCCccc-hhcccccccccchhhhcChhHHHHHHHHHHHHHccchhHHHHHhhhcCCeeeeccCcccccccccc
Q 024610 19 KQLLTHEHKLFPQ-HYAQKSSTRFLDIYQLGNKQAVEKERARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVK 97 (265)
Q Consensus 19 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~e~~~~rrk~L~~e~~~~yf~D~~~~r~~~GK~f~ap~~l~ka~~Aly 97 (265)
+.++-..+|.+.. ..+.++.... ..|++|+|++++||++|.+|+++|||+||++||+|+||+|+||++|||+++|+|
T Consensus 23 rPiG~~~pP~~~~~~~~~~s~~~~--~~~~~~~ek~~~rrk~L~~e~~~~yf~D~~~~r~~~GK~f~ap~~l~~~~kAly 100 (252)
T PF05176_consen 23 RPIGLPQPPTPGNKGSDTRSLKQR--RDDFFNYEKHEKRRKELKKEMSKGYFRDWKEFRKTNGKIFIAPPSLFKADKALY 100 (252)
T ss_pred CCCCCCCCCcCCCccccccchhhh--hhhhcCHHHHHHHHHHHHHHhccchHHHHHHHHhcCCccccCCcccCcHHhCCc
Confidence 5555566655541 1333444432 227999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhccCC--CeeEEEEecccch
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSK--NVHLYEVSFIDSW 175 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~~~~--~vqiv~In~~e~~ 175 (265)
|||+.+++|+|+. +|+++.++||||||+|+|+++||+|++||+.|+.+++.+++ ++|+|+||++|||
T Consensus 101 FP~l~g~tL~g~~-----------~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~ 169 (252)
T PF05176_consen 101 FPNLQGKTLAGNK-----------VDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW 169 (252)
T ss_pred CCCCccccCCCCC-----------cccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH
Confidence 9999977777765 46677889999999999999999999999999999999888 9999999999999
Q ss_pred hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC--hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 176 LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD--HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 176 lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~--~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
+|++ +.++++++||+.+|+++ |.+++...++ .+++||+|||+|+++|||||||++|||||||||+||++|++.
T Consensus 170 ~k~~--l~~~~~~~lrk~ip~~~---h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~ 244 (252)
T PF05176_consen 170 LKSW--LVKLFMGSLRKSIPEER---HDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELES 244 (252)
T ss_pred HHHH--HHHHHhhhhhccCCHHH---CceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHH
Confidence 9999 99999999999999864 5555545555 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 024610 254 LLSCTSLL 261 (265)
Q Consensus 254 L~k~~~~L 261 (265)
|++||+.|
T Consensus 245 L~k~~~~L 252 (252)
T PF05176_consen 245 LWKCVKGL 252 (252)
T ss_pred HHHHHhcC
Confidence 99999986
No 2
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-40 Score=289.83 Aligned_cols=245 Identities=26% Similarity=0.279 Sum_probs=175.8
Q ss_pred CchHHHHHhhhccccchh-------hhhhcCCCCCccchhccccccc-ccchhh------------hcChhHHH---HHH
Q 024610 1 MFRINRLINQTRASLITS-------KQLLTHEHKLFPQHYAQKSSTR-FLDIYQ------------LGNKQAVE---KER 57 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-f~~~~~------------~~~~e~~~---~rr 57 (265)
|-++||++.|. +..+-+ ....+|++ .++|+-+-+++.+ |++++. ++|.|++. +|.
T Consensus 2 a~~~~k~l~hp-~l~~kh~~~lfs~~~~~~~d~-ke~q~~aL~~p~gl~~~p~k~~~~~~~~~~r~~~~~e~t~~~~~r~ 79 (287)
T KOG4614|consen 2 ATTLNKILKHP-SLLNKHHQGLFSLTRYENHDS-KESQMPALRSPTGLFLDPYKFGNKKAIEDERARLNDEMTRGYFARM 79 (287)
T ss_pred ccchhhhhcch-HHHHHHHhhhhhcchhhccCc-cccccHHHhccchhhcchhhhccccccchHHHHhChhhccCHHHHH
Confidence 45789999994 444433 55778885 8999999887775 666554 55556664 888
Q ss_pred HHHHHHHccchhHHHHHhhhcCCeeeeccCccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEE
Q 024610 58 ARLADEMNRGYFADVAELKKHGGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCL 137 (265)
Q Consensus 58 k~L~~e~~~~yf~D~~~~r~~~GK~f~ap~~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l 137 (265)
|||..|++++..+|+..|+.++||+|++|++||++++|+.|||+.++.++|.-- +...++..|+++++++
T Consensus 80 KEl~~e~~kS~i~Df~~f~~~kGkLF~~p~~y~ke~~al~~~h~~g~a~r~~~~----------~~~kd~~~g~p~~~~l 149 (287)
T KOG4614|consen 80 KELKEEGGKSQIPDFVFFATLKGKLFSLPMAYIKEVRALLVMHDLGVACRDLIA----------AANKDIIPGFPVLAVL 149 (287)
T ss_pred HHHHHhcccccCchhhHHhhhcCceeeccHHHHHHHhHhhhhhhhhhhHHHHHH----------HHHHhhccCCcEEEEe
Confidence 888888888888999999999999999999999999999999999555554432 2335567799999999
Q ss_pred eeeccchHHHhhhcchhH----------Hhhcc---C-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610 138 TFRASSQAMVDSWSSPFF----------EAFSD---S-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR 203 (265)
Q Consensus 138 ~~~~~gq~~~~sw~~p~~----------e~~~~---~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~ 203 (265)
|++++|+++.++|++... +.+.. + -.+++++|++.++.++.. +.+ +...--.+++. ++
T Consensus 150 FSna~g~kl~sn~vq~~~~~~~k~dyl~~~~a~~s~n~i~~w~~e~f~~~~~~~~~--~v~-~~~~W~~~~~~-----~~ 221 (287)
T KOG4614|consen 150 FSNAKGLKLNSNEVQTESLVVPKVDYLCLSFAASSQNMISSWFLESFGNRKDLQLF--EVS-FIDKWLLGLAV-----LQ 221 (287)
T ss_pred ecccccchhhhhhhhhccccccccceeeHHHhhhhhHHHHHHHHHHHcchhHhhhh--hhH-HHHHHHhhchh-----hc
Confidence 999999999999987322 11110 0 123333333333332221 111 01111112221 22
Q ss_pred eeEEE----cCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcCC
Q 024610 204 QIVYS----FGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEGE 265 (265)
Q Consensus 204 ~~~y~----~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e~ 265 (265)
+..++ ..-.+++|++|-++|..+|||||||+.|||||+|||.|||+|+|.|++|++.|++++
T Consensus 222 ~pf~fe~s~~qw~f~~r~e~~~nN~l~GyV~L~D~s~kIRW~g~G~aTp~Eve~L~~~~k~L~~~~ 287 (287)
T KOG4614|consen 222 KPFNFENSVLQWAFYFRKEIKVNNLLTGYVLLLDKSGKIRWQGFGTATPEEVEQLLSCTKLLLEDQ 287 (287)
T ss_pred CCCCCcccccccchhhhhHHhhcceeeEEEEEEccCceEEEeecCCCCHHHHHHHHHHHHHHhcCC
Confidence 22221 122478999999999999999999999999999999999999999999999999875
No 3
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.98 E-value=6.4e-09 Score=85.10 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=82.1
Q ss_pred cccCCCceeeC--CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhh-hcchhHH------hh---ccCC
Q 024610 95 AVKFPDLDVSY--SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDS-WSSPFFE------AF---SDSK 162 (265)
Q Consensus 95 AlyFPnl~~~~--l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~s-w~~p~~e------~~---~~~~ 162 (265)
+..+|++..++ ++|+++++.+ ++||+.||.+| .+ ||.||.. .+ -...
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~------------~~gk~~vv~f~---------~~~~Cp~C~~~~p~l~~l~~~~~~~ 61 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSD------------FKGKPVVVNFW---------ASAWCPPCRKELPYLNELQEKYKDK 61 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGG------------GTTSEEEEEEE---------STTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEeecCCCCEecHHH------------hCCCeEEEEEE---------ccCCCCcchhhhhhHHhhhhhhccC
Confidence 45689999855 9999998653 46899888666 78 9999873 22 1345
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhccc--CC-----cccEEEEEeCC
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKIL--NL-----LTGYIFLLDKF 235 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~--N~-----~vGYVyLVD~~ 235 (265)
++++|.|+..++.. +..+ +.+ .+. ...+ ..+....+.+++|+. -. .++.+||||.+
T Consensus 62 ~v~~v~v~~~~~~~-----~~~~----~~~-~~~------~~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~ 124 (146)
T PF08534_consen 62 GVDVVGVSSDDDPP-----VREF----LKK-YGI------NFPV-LSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKD 124 (146)
T ss_dssp TCEEEEEEESSSHH-----HHHH----HHH-TTT------TSEE-EEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETT
T ss_pred ceEEEEecccCCHH-----HHHH----HHh-hCC------CceE-EechHHHHHHHhCCccccccccCCeecEEEEEECC
Confidence 79999999987644 2333 222 111 1222 356778899999966 22 69999999999
Q ss_pred CcEEEcccCCCC
Q 024610 236 GRIRWQGFGMAT 247 (265)
Q Consensus 236 grIRWagsG~at 247 (265)
|+|+|.+.|..+
T Consensus 125 G~V~~~~~g~~~ 136 (146)
T PF08534_consen 125 GKVVYRHVGPDP 136 (146)
T ss_dssp SBEEEEEESSBT
T ss_pred CEEEEEEeCCCC
Confidence 999999999988
No 4
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.98 E-value=4.6e-09 Score=90.57 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=86.6
Q ss_pred ccccccCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------hccCCC
Q 024610 92 ALAAVKFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------FSDSKN 163 (265)
Q Consensus 92 a~~AlyFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~~~~~~ 163 (265)
...+...|++.+.+++| +++... ...+||+.||.+| ++||.||.+. +.+ .+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~-----------~~~~gk~vvv~Fw---------atwC~~C~~e~p~l~~l~~-~~ 97 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQAD-----------VLTQGKPVLLNVW---------ATWCPTCRAEHQYLNQLSA-QG 97 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHH-----------HhcCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHH-cC
Confidence 44566799999988885 444321 1225899888666 8999999843 332 47
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
+++|-||+.++.- . ++.+ +.. .+.+ ..++..+....+-+++|+.. ++.+||+|++|+|+|...
T Consensus 98 ~~vi~v~~~~~~~--~--~~~~-~~~--~~~~--------~~~~~~D~~~~~~~~~gv~~--~P~t~vid~~G~i~~~~~ 160 (185)
T PRK15412 98 IRVVGMNYKDDRQ--K--AISW-LKE--LGNP--------YALSLFDGDGMLGLDLGVYG--APETFLIDGNGIIRYRHA 160 (185)
T ss_pred CEEEEEECCCCHH--H--HHHH-HHH--cCCC--------CceEEEcCCccHHHhcCCCc--CCeEEEECCCceEEEEEe
Confidence 9999999877532 1 2332 111 1222 22222466667778899876 899999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 024610 244 GMATPEELSSLLS 256 (265)
Q Consensus 244 G~at~~E~e~L~k 256 (265)
|.-++++++...+
T Consensus 161 G~~~~~~l~~~i~ 173 (185)
T PRK15412 161 GDLNPRVWESEIK 173 (185)
T ss_pred cCCCHHHHHHHHH
Confidence 9999988765443
No 5
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.91 E-value=1.8e-08 Score=87.82 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=93.4
Q ss_pred ccCCCceeeC-----CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH------HhhccCCCe
Q 024610 96 VKFPDLDVSY-----SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF------EAFSDSKNV 164 (265)
Q Consensus 96 lyFPnl~~~~-----l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~~~~v 164 (265)
...|.+.+.+ ++|..++... -....++|||-||-+| ++||.||. ++++. .++
T Consensus 27 ~~~p~v~~~~~ge~~~~~~~~~y~~-------~~~~~l~GKV~lvn~~---------Aswc~~c~~e~P~l~~l~~-~~~ 89 (184)
T TIGR01626 27 QSVPSVGVSEYGEIVLSGKDTVYQP-------WGSAELAGKVRVVHHI---------AGRTSAKEXNASLIDAIKA-AKF 89 (184)
T ss_pred CcCCceEecCCceEEEcCCccccee-------ccHHHcCCCEEEEEEE---------ecCCChhhccchHHHHHHH-cCC
Confidence 4567776654 3666665442 1234567999999887 99999876 34432 247
Q ss_pred eE------EEEecccchh--hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEE-EEEeCC
Q 024610 165 HL------YEVSFIDSWL--LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYI-FLLDKF 235 (265)
Q Consensus 165 qi------v~In~~e~~l--k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYV-yLVD~~ 235 (265)
.+ +-||++|... ..+ ++. |+.......|. .. + .++....+..+.|+.- .+.+ ||||++
T Consensus 90 ~~~~y~~t~~IN~dd~~~~~~~f--Vk~-fie~~~~~~P~------~~-v-llD~~g~v~~~~gv~~--~P~T~fVIDk~ 156 (184)
T TIGR01626 90 PPVKYQTTTIINADDAIVGTGMF--VKS-SAKKGKKENPW------SQ-V-VLDDKGAVKNAWQLNS--EDSAIIVLDKT 156 (184)
T ss_pred CcccccceEEEECccchhhHHHH--HHH-HHHHhcccCCc------ce-E-EECCcchHHHhcCCCC--CCceEEEECCC
Confidence 77 9999987532 111 111 22223333332 12 2 3577667888898764 7677 999999
Q ss_pred CcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 236 GRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 236 grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
|+|++...|..+++|++.+...++.|+.
T Consensus 157 GkVv~~~~G~l~~ee~e~~~~li~~ll~ 184 (184)
T TIGR01626 157 GKVKFVKEGALSDSDIQTVISLVNGLLK 184 (184)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888888874
No 6
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.86 E-value=2.3e-08 Score=80.06 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=80.2
Q ss_pred cCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEE
Q 024610 97 KFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYE 168 (265)
Q Consensus 97 yFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~ 168 (265)
..|+|.+.+++| ++++.. .++||+.||.+| ++||.+|.+ .+....++++|.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~------------~~~gk~vvv~F~---------a~~C~~C~~~~~~l~~l~~~~~~~vv~ 60 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSA------------DLKGKPYLLNVW---------ASWCAPCREEHPVLMALARQGRVPIYG 60 (127)
T ss_pred CCCCcccccccCCCccccHH------------HcCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHhcCcEEEE
Confidence 458898888888 555432 235899888666 899998873 344344699999
Q ss_pred EecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610 169 VSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT 247 (265)
Q Consensus 169 In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at 247 (265)
|++.++.- . ++.+ +.+ ..+ ...+..+....+-+.+++.- ++.+|+||++|+|++...|..+
T Consensus 61 v~~~~~~~--~--~~~~----~~~~~~~--------~~~~~~D~~~~~~~~~~v~~--~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 61 INYKDNPE--N--ALAW----LARHGNP--------YAAVGFDPDGRVGIDLGVYG--VPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred EECCCCHH--H--HHHH----HHhcCCC--------CceEEECCcchHHHhcCCCC--CCeEEEECCCceEEEEEeccCC
Confidence 99876432 1 2232 222 111 11122456677888888874 8999999999999999999998
Q ss_pred HHHH
Q 024610 248 PEEL 251 (265)
Q Consensus 248 ~~E~ 251 (265)
++++
T Consensus 123 ~~~~ 126 (127)
T cd03010 123 PEVW 126 (127)
T ss_pred hHhc
Confidence 8765
No 7
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.84 E-value=1.2e-08 Score=80.65 Aligned_cols=108 Identities=22% Similarity=0.238 Sum_probs=76.2
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhh-hcchhHHh-------hcc--CCCee
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDS-WSSPFFEA-------FSD--SKNVH 165 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~s-w~~p~~e~-------~~~--~~~vq 165 (265)
..+|++.+++.+|+++++.+ ++||++||.++ .+ ||..|.+. ... ..+++
T Consensus 3 ~~~P~f~l~~~~g~~~~l~~------------l~gk~~vl~f~---------~~~~c~~c~~~l~~l~~~~~~~~~~~~~ 61 (124)
T PF00578_consen 3 DKAPDFTLTDSDGKTVSLSD------------LKGKPVVLFFW---------PTAWCPFCQAELPELNELYKKYKDKGVQ 61 (124)
T ss_dssp SBGGCEEEETTTSEEEEGGG------------GTTSEEEEEEE---------STTTSHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred CCCCCcEeECCCCCEEEHHH------------HCCCcEEEEEe---------CccCccccccchhHHHHHhhhhccceEE
Confidence 46899999999999998653 26899999877 55 98887632 111 34899
Q ss_pred EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCcEEEc
Q 024610 166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~grIRWa 241 (265)
+|.|+.++.-- ++.+ +.. .+. ...+ ..+....+.+.+|+.+. .++.+||||++|+|||+
T Consensus 62 vi~is~d~~~~-----~~~~----~~~-~~~------~~~~-~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 62 VIGISTDDPEE-----IKQF----LEE-YGL------PFPV-LSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp EEEEESSSHHH-----HHHH----HHH-HTC------SSEE-EEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred eeecccccccc-----hhhh----hhh-hcc------cccc-ccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 99999976431 2222 111 111 1122 23556789999999954 79999999999999996
No 8
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.78 E-value=8.9e-08 Score=80.23 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=89.8
Q ss_pred ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CC
Q 024610 92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SK 162 (265)
Q Consensus 92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~ 162 (265)
...+...|++.+.+++|+++++.. +.||+++|-++ ++||.+|... . ++ ..
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~------------~~~k~~~l~f~---------a~~C~~C~~~~~~l~~~~~~~~~~ 93 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKD------------LKGKGVFLNFW---------GTWCKPCEKEMPYMNELYPKYKEK 93 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHH------------cCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHhhcC
Confidence 445567999999999999987542 24788888555 8899988631 1 11 13
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
+++++.|+.+++.- . +..+ +++ .+- ...+ ..+....+.+.+|+.. ++.+||||++|+|++..
T Consensus 94 ~~~vi~i~~d~~~~--~--~~~~----~~~-~~~------~~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~g~i~~~~ 155 (173)
T PRK03147 94 GVEIIAVNVDETEL--A--VKNF----VNR-YGL------TFPV-AIDKGRQVIDAYGVGP--LPTTFLIDKDGKVVKVI 155 (173)
T ss_pred CeEEEEEEcCCCHH--H--HHHH----HHH-hCC------CceE-EECCcchHHHHcCCCC--cCeEEEECCCCcEEEEE
Confidence 58999999986421 1 1222 222 111 1222 2466788999999975 89999999999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 024610 243 FGMATPEELSSLLSCT 258 (265)
Q Consensus 243 sG~at~~E~e~L~k~~ 258 (265)
.|..+++|++.+.+.+
T Consensus 156 ~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 156 TGEMTEEQLEEYLEKI 171 (173)
T ss_pred eCCCCHHHHHHHHHHh
Confidence 9999999987766544
No 9
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.78 E-value=1.1e-07 Score=80.86 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=84.4
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEE
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLY 167 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv 167 (265)
.....|+|.+.+++|++..... ....+||+.||-++ ++||.+|.+ .+.+ .++++|
T Consensus 36 vG~~ap~f~l~~~~G~~~~~~~---------~~~~~gk~vll~F~---------a~wC~~C~~~~p~l~~l~~-~~~~vi 96 (173)
T TIGR00385 36 IGKPVPAFPLAALREPLQAYTP---------EAFIQGKPVLLNVW---------ASWCPPCRAEHPYLNELAK-DGLPIV 96 (173)
T ss_pred cCCCCCCccccccCCCCcccCH---------HHhcCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHH-cCCEEE
Confidence 3457899999999987433210 01125888888555 789999874 2333 369999
Q ss_pred EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610 168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT 247 (265)
Q Consensus 168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at 247 (265)
.||+.+..- . .+.+ .. +.+.+ ...+..+....+-+.+++.. ++++|+||++|+|||..+|..+
T Consensus 97 ~V~~~~~~~-~---~~~~-~~--~~~~~--------f~~v~~D~~~~~~~~~~v~~--~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 97 GVDYKDQSQ-N---ALKF-LK--ELGNP--------YQAILIDPNGKLGLDLGVYG--APETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred EEECCCChH-H---HHHH-HH--HcCCC--------CceEEECCCCchHHhcCCee--CCeEEEEcCCceEEEEEeccCC
Confidence 999865421 1 1222 11 11222 11122455667888888876 8999999999999999999999
Q ss_pred HHHHHHHHH
Q 024610 248 PEELSSLLS 256 (265)
Q Consensus 248 ~~E~e~L~k 256 (265)
.+|++....
T Consensus 160 ~~~l~~~l~ 168 (173)
T TIGR00385 160 NEVWTEGFL 168 (173)
T ss_pred HHHHHHHHH
Confidence 888766543
No 10
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.75 E-value=1.2e-07 Score=78.55 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=83.0
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhH----------HhhccCCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFF----------EAFSDSKN 163 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~----------e~~~~~~~ 163 (265)
....|+|.+.+++|+++++.+ ++||+.||.+| .+| |..|. +.+. ..+
T Consensus 7 g~~~p~f~l~~~~G~~~~l~~------------~~gk~~ll~f~---------~~~~~p~C~~~~~~l~~~~~~~~-~~~ 64 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLTD------------FQGQRVLVYFY---------PKAMTPGCTVQACGLRDNMDELK-KAG 64 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHHH------------hCCCCEEEEEE---------CCCCCCchHHHHHHHHHHHHHHH-HCC
Confidence 466899999999999987642 36899888665 443 33343 2222 257
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCc----------ccEEEEE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----------TGYIFLL 232 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----------vGYVyLV 232 (265)
+++|.|++++.- . +..+ +.+ +.+ ..+ ..+....+-+++|+.... .+++|||
T Consensus 65 v~vi~Is~d~~~---~--~~~~----~~~~~~~--------~~~-l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~li 126 (154)
T PRK09437 65 VVVLGISTDKPE---K--LSRF----AEKELLN--------FTL-LSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLI 126 (154)
T ss_pred CEEEEEcCCCHH---H--HHHH----HHHhCCC--------CeE-EECCCchHHHHhCCCcccccccccccCcceEEEEE
Confidence 999999986521 1 2332 222 222 122 235567788888876431 2578999
Q ss_pred eCCCcEEEcccCCCCHHHHHHHHHHHH
Q 024610 233 DKFGRIRWQGFGMATPEELSSLLSCTS 259 (265)
Q Consensus 233 D~~grIRWagsG~at~~E~e~L~k~~~ 259 (265)
|++|+||++..|+.++++.+.+.+.++
T Consensus 127 d~~G~i~~~~~g~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 127 DADGKIEHVFDKFKTSNHHDVVLDYLK 153 (154)
T ss_pred CCCCEEEEEEcCCCcchhHHHHHHHHh
Confidence 999999999999998888776665543
No 11
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.70 E-value=1.5e-07 Score=81.56 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=83.4
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------hccCCCeeE
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------FSDSKNVHL 166 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~~~~~~vqi 166 (265)
+.+...|++.+++++|+++++... ..+||++||.++ ++||.+|.+. +.+..++++
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~----------~~~gk~vvl~F~---------atwCp~C~~~lp~l~~~~~~~~~~v 107 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGS----------IAPGRPTLLMFT---------APSCPVCDKLFPIIKSIARAEETDV 107 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccch----------hcCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHhcCCcE
Confidence 455679999999999999876321 135899888555 8999998742 334456788
Q ss_pred EEEecccchhhccccchHHHHHHHHhc-CCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKS-KDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~-~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~ 245 (265)
+-|+..+ .- - ...+ +++. ++ ...| ....++-+.+|+.. ++++||+|++|+|||.|- .
T Consensus 108 v~Is~~~-~~--~--~~~~----~~~~~~~--------~~~~--~~~~~i~~~y~v~~--~P~~~lID~~G~I~~~g~-~ 165 (189)
T TIGR02661 108 VMISDGT-PA--E--HRRF----LKDHELG--------GERY--VVSAEIGMAFQVGK--IPYGVLLDQDGKIRAKGL-T 165 (189)
T ss_pred EEEeCCC-HH--H--HHHH----HHhcCCC--------ccee--echhHHHHhccCCc--cceEEEECCCCeEEEccC-C
Confidence 8888432 11 1 2222 2221 11 1112 12356778889875 899999999999999853 3
Q ss_pred CCHHHHHHHHHHHH
Q 024610 246 ATPEELSSLLSCTS 259 (265)
Q Consensus 246 at~~E~e~L~k~~~ 259 (265)
.+.++++.+...++
T Consensus 166 ~~~~~le~ll~~l~ 179 (189)
T TIGR02661 166 NTREHLESLLEADR 179 (189)
T ss_pred CCHHHHHHHHHHHH
Confidence 56677777776543
No 12
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.70 E-value=1.1e-07 Score=76.76 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=81.3
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCCCeeE
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSKNVHL 166 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~~vqi 166 (265)
.+|++.+++.+|+.+++.+ ++||+.||.+|. .+||.+|. +.+. ..++++
T Consensus 2 ~~p~f~l~~~~g~~~~l~~------------~~gk~~ll~f~~--------~~~cp~C~~~~~~l~~~~~~~~-~~~~~v 60 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSD------------LRGKPVVLYFYP--------KDDTPGCTKEACDFRDLYEEFK-ALGAVV 60 (140)
T ss_pred CCCCccccCCCCCEEeHHH------------hCCCcEEEEEeC--------CCCCCchHHHHHHHHHHHHHHH-HCCCEE
Confidence 5799999999999987653 358998885552 35555554 2233 257999
Q ss_pred EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc-------ccEEEEEeCCCcEE
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL-------TGYIFLLDKFGRIR 239 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~-------vGYVyLVD~~grIR 239 (265)
|.|+++..- . +..+ .+..+. ...+ ..+....+-+++|+.... .+.+||||++|+|+
T Consensus 61 v~is~d~~~---~--~~~~-----~~~~~~------~~~~-l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~ 123 (140)
T cd03017 61 IGVSPDSVE---S--HAKF-----AEKYGL------PFPL-LSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIV 123 (140)
T ss_pred EEEcCCCHH---H--HHHH-----HHHhCC------CceE-EECCccHHHHHhCCccccccccCCcceeEEEECCCCEEE
Confidence 999986421 1 2332 222221 1222 235567788999998731 17899999999999
Q ss_pred EcccCCCCHHHHHHH
Q 024610 240 WQGFGMATPEELSSL 254 (265)
Q Consensus 240 WagsG~at~~E~e~L 254 (265)
+...|..++++++-.
T Consensus 124 ~~~~g~~~~~~~~~~ 138 (140)
T cd03017 124 KVWRKVKPKGHAEEV 138 (140)
T ss_pred EEEecCCccchHHHH
Confidence 999999988887643
No 13
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.67 E-value=1.9e-07 Score=76.21 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=76.3
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHH-------hhccCCCeeE
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFE-------AFSDSKNVHL 166 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e-------~~~~~~~vqi 166 (265)
....|+|.+.+.+|+++++.+ ++||++||.+| .+| |.+|.. ..++.+++++
T Consensus 3 G~~aP~f~l~~~~g~~~~l~~------------~~gk~vvl~f~---------~~~~c~~C~~e~~~l~~~~~~~~~~~v 61 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLAD------------FAGKVKVISVF---------PSIDTPVCATQTKRFNKEAAKLDNTVV 61 (143)
T ss_pred CCCCCCcEEECCCCcEEeHHH------------hCCCeEEEEEE---------cCCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 457899999999999987642 36898888655 677 455652 2344468999
Q ss_pred EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHHHHHhcccCC----cccEEEEEeCCCcEEEc
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYFRKELKILNL----LTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~iRe~Lgi~N~----~vGYVyLVD~~grIRWa 241 (265)
|.||+++... ...+ .+..+.. ...+ ..+.. ..+-+++|+.-. ....+||||++|+|||.
T Consensus 62 i~Is~d~~~~-----~~~~-----~~~~~~~-----~~~~-l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 62 LTISADLPFA-----QKRW-----CGAEGVD-----NVTT-LSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred EEEECCCHHH-----HHHH-----HHhcCCC-----CceE-eecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 9999876321 1222 2222211 1112 12433 678888888532 24689999999999999
Q ss_pred ccCCCCH
Q 024610 242 GFGMATP 248 (265)
Q Consensus 242 gsG~at~ 248 (265)
.-|+...
T Consensus 126 ~~~~~~~ 132 (143)
T cd03014 126 ELVPEIT 132 (143)
T ss_pred EECCCcc
Confidence 9887543
No 14
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.65 E-value=2.1e-07 Score=75.10 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=77.0
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeE
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHL 166 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqi 166 (265)
++|++.+.+++|+++++.+ ++||++||.++. .+||.+|.. .+. ..++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~------------~~gk~~ll~f~~--------~~~c~~C~~~~~~l~~~~~~~~-~~~~~~ 59 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSD------------FKGKWVVLFFYP--------KDFTPVCTTELCAFRDLAEEFA-KGGAEV 59 (140)
T ss_pred CCCCceeccCCCcEEehHH------------hCCCeEEEEEeC--------CCCCCcCHHHHHHHHHHHHHHH-HCCCEE
Confidence 4799999999999998653 258989885552 457665542 232 357999
Q ss_pred EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc-------ccEEEEEeCCCcEE
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL-------TGYIFLLDKFGRIR 239 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~-------vGYVyLVD~~grIR 239 (265)
|.|+.++... ++.+ .+..+. ....+ ..+....+.+.+|+.... .+++||||++|+|+
T Consensus 60 i~is~d~~~~-----~~~~-----~~~~~~-----~~~~~-l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~ 123 (140)
T cd02971 60 LGVSVDSPFS-----HKAW-----AEKEGG-----LNFPL-LSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIR 123 (140)
T ss_pred EEEeCCCHHH-----HHHH-----HhcccC-----CCceE-EECCChHHHHHcCCccccccccCceeEEEEEECCCCcEE
Confidence 9999865211 2222 233311 11222 235567899999998642 45899999999999
Q ss_pred EcccCCCC
Q 024610 240 WQGFGMAT 247 (265)
Q Consensus 240 WagsG~at 247 (265)
+++.|.-.
T Consensus 124 ~~~~~~~~ 131 (140)
T cd02971 124 YVEVEPLP 131 (140)
T ss_pred EEEecCCC
Confidence 99999865
No 15
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.61 E-value=3.2e-07 Score=80.45 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=44.9
Q ss_pred cccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-c--cC
Q 024610 91 PALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-S--DS 161 (265)
Q Consensus 91 ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~--~~ 161 (265)
+.+.+..+|++.+.+++|+++++.+ ++||+.||.+| +|||.||.+. + . ..
T Consensus 12 ~~~~~~~~pdf~l~d~~G~~vsL~~------------~kGkvvlv~fw---------AswC~~C~~e~p~L~~l~~~~~~ 70 (199)
T PTZ00056 12 KDELRKSIYDYTVKTLEGTTVPMSS------------LKNKVLMITNS---------ASKCGLTKKHVDQMNRLHSVFNP 70 (199)
T ss_pred chhcCCCCCceEEECCCCCEEeHHH------------hCCCEEEEEEE---------CCCCCChHHHHHHHHHHHHHHhc
Confidence 3445567899999999999987653 36898888555 8999998731 1 1 12
Q ss_pred CCeeEEEEecc
Q 024610 162 KNVHLYEVSFI 172 (265)
Q Consensus 162 ~~vqiv~In~~ 172 (265)
.++++|.||..
T Consensus 71 ~g~~vvgv~~~ 81 (199)
T PTZ00056 71 LGLEILAFPTS 81 (199)
T ss_pred CceEEEEecch
Confidence 46999999974
No 16
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.60 E-value=3.6e-07 Score=72.35 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=79.4
Q ss_pred CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecc
Q 024610 99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFI 172 (265)
Q Consensus 99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~ 172 (265)
|++.+++++|+.++... +.||++||.++ .+||.+|.. .+.+. ++++.|+++
T Consensus 1 p~f~l~~~~g~~~~~~~------------~~~k~~vl~F~---------~~~C~~C~~~~~~l~~~~~~--~~~i~i~~~ 57 (123)
T cd03011 1 PLFTATTLDGEQFDLES------------LSGKPVLVYFW---------ATWCPVCRFTSPTVNQLAAD--YPVVSVALR 57 (123)
T ss_pred CCceeecCCCCEeeHHH------------hCCCEEEEEEE---------CCcChhhhhhChHHHHHHhh--CCEEEEEcc
Confidence 78889999999887542 25788888666 789998873 23333 788889886
Q ss_pred cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610 173 DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEEL 251 (265)
Q Consensus 173 e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~ 251 (265)
++-... +..+ +++ .++ ..+ ..+....+.+.+++.. ++++||+|++| ||+...|.++++++
T Consensus 58 ~~~~~~---~~~~----~~~~~~~--------~~~-~~d~~~~~~~~~~i~~--~P~~~vid~~g-i~~~~~g~~~~~~~ 118 (123)
T cd03011 58 SGDDGA---VARF----MQKKGYG--------FPV-INDPDGVISARWGVSV--TPAIVIVDPGG-IVFVTTGVTSEWGL 118 (123)
T ss_pred CCCHHH---HHHH----HHHcCCC--------ccE-EECCCcHHHHhCCCCc--ccEEEEEcCCC-eEEEEeccCCHHHH
Confidence 531111 2222 222 122 111 2366678999999976 99999999988 99999999999998
Q ss_pred HH
Q 024610 252 SS 253 (265)
Q Consensus 252 e~ 253 (265)
..
T Consensus 119 ~~ 120 (123)
T cd03011 119 RL 120 (123)
T ss_pred Hh
Confidence 54
No 17
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.59 E-value=4.9e-07 Score=73.89 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=76.1
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCC-ceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIP-KVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~g-KvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
....|++.+.+.+|+++++.+ ++| |+.||.++ + .+||.+|.. .+. ..+
T Consensus 4 G~~~p~~~l~~~~g~~v~l~~------------~~g~k~~vl~f~-~-------~~~c~~C~~~~~~l~~~~~~~~-~~~ 62 (149)
T cd03018 4 GDKAPDFELPDQNGQEVRLSE------------FRGRKPVVLVFF-P-------LAFTPVCTKELCALRDSLELFE-AAG 62 (149)
T ss_pred CCcCCCcEecCCCCCEEeHHH------------HcCCCeEEEEEe-C-------CCCCccHHHHHHHHHHHHHHHH-hCC
Confidence 467899999999999987653 346 88777554 2 688888762 222 247
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh--HHHHHHhcccCCc----ccEEEEEeCCCc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH--YYFRKELKILNLL----TGYIFLLDKFGR 237 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~--~~iRe~Lgi~N~~----vGYVyLVD~~gr 237 (265)
+++|.|+.++--. ++.+ +++ .+. +..+ ..+.. ..+-+.+|+.... ...+||||++|+
T Consensus 63 v~vi~vs~d~~~~-----~~~~----~~~-~~~------~~~~-~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~ 125 (149)
T cd03018 63 AEVLGISVDSPFS-----LRAW----AEE-NGL------TFPL-LSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGI 125 (149)
T ss_pred CEEEEecCCCHHH-----HHHH----HHh-cCC------CceE-ecCCCchhHHHHHhCCccccCCCccceEEEECCCCE
Confidence 9999999865211 2332 122 121 1222 13434 5677888887432 348899999999
Q ss_pred EEEcccCCC
Q 024610 238 IRWQGFGMA 246 (265)
Q Consensus 238 IRWagsG~a 246 (265)
|||...|..
T Consensus 126 v~~~~~~~~ 134 (149)
T cd03018 126 IRYAWVSDD 134 (149)
T ss_pred EEEEEecCC
Confidence 999999986
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.58 E-value=5.3e-07 Score=76.14 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=81.9
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCee
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVH 165 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vq 165 (265)
..+|++.+.+.+|+++++.+. ..|+++||-++ .+||.+|.. .++ ..+++
T Consensus 2 ~~~p~f~l~~~~g~~v~l~~~-----------~~~k~~ll~f~---------~t~Cp~c~~~~~~l~~l~~~~~-~~~v~ 60 (171)
T cd02969 2 SPAPDFSLPDTDGKTYSLADF-----------ADGKALVVMFI---------CNHCPYVKAIEDRLNRLAKEYG-AKGVA 60 (171)
T ss_pred CcCCCccccCCCCCEEeHHHH-----------hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHHh-hCCeE
Confidence 368999999999998875431 15788888555 789987652 222 24799
Q ss_pred EEEEecccch-----hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610 166 LYEVSFIDSW-----LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRW 240 (265)
Q Consensus 166 iv~In~~e~~-----lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRW 240 (265)
+|.|++++.. .... ++.+ .+..+. ... +..+....+-+.+|+.. ++++||||++|||+|
T Consensus 61 ~v~is~d~~~~~~~d~~~~--~~~~-----~~~~~~------~~~-~l~D~~~~~~~~~~v~~--~P~~~lid~~G~v~~ 124 (171)
T cd02969 61 VVAINSNDIEAYPEDSPEN--MKAK-----AKEHGY------PFP-YLLDETQEVAKAYGAAC--TPDFFLFDPDGKLVY 124 (171)
T ss_pred EEEEecCccccccccCHHH--HHHH-----HHHCCC------Cce-EEECCchHHHHHcCCCc--CCcEEEECCCCeEEE
Confidence 9999986521 0011 2222 111221 111 22466678889999975 899999999999999
Q ss_pred ccc------CCCCHHHHHHHHHHHHhhhcC
Q 024610 241 QGF------GMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 241 ags------G~at~~E~e~L~k~~~~Ll~e 264 (265)
.+- |+..+...+.+...++.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 125 RGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred eecccCCcccccccccHHHHHHHHHHHHcC
Confidence 852 111222334455555555543
No 19
>PLN02412 probable glutathione peroxidase
Probab=98.56 E-value=9.3e-07 Score=75.15 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=80.7
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
+.+..+|++.+.+++|+++++.+ ++||+.||.+| ++||.+|.+ .+.+ .
T Consensus 4 ~~~~~~pdf~l~d~~G~~v~l~~------------~~gk~vlv~f~---------a~~C~~c~~e~~~l~~l~~~~~~-~ 61 (167)
T PLN02412 4 ESPKSIYDFTVKDIGGNDVSLNQ------------YKGKVLLIVNV---------ASKCGLTDSNYKELNVLYEKYKE-Q 61 (167)
T ss_pred ccCCCCCceEEECCCCCEEeHHH------------hCCCEEEEEEe---------CCCCCChHHHHHHHHHHHHHHhh-C
Confidence 44578999999999999987653 36899888666 899998873 2222 3
Q ss_pred CeeEEEEecccchh---hccccchHHHHHHHHhcCCCCCccccceeEEE----cC-Ch----HHHHHHh-cccC---Ccc
Q 024610 163 NVHLYEVSFIDSWL---LCRSPIKRILLKIMRKSKDAGENVLQRQIVYS----FG-DH----YYFRKEL-KILN---LLT 226 (265)
Q Consensus 163 ~vqiv~In~~e~~l---k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~----~g-~~----~~iRe~L-gi~N---~~v 226 (265)
++++|.||.++.-- ...--+...+. +...-. ..++. -| .. ..++... +... .-.
T Consensus 62 g~~vvgv~~~~~~~~~~~~~~~~~~~~~----~~~~~~------fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 131 (167)
T PLN02412 62 GFEILAFPCNQFLGQEPGSNEEIQQTVC----TRFKAE------FPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWN 131 (167)
T ss_pred CcEEEEecccccccCCCCCHHHHHHHHH----HccCCC------CceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCC
Confidence 69999999753100 00000222221 111111 11111 11 11 1122221 1111 114
Q ss_pred cEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 227 GYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
+++||||.+|+|++.-.|..++++++ +.++.||++
T Consensus 132 p~tflId~~G~vv~~~~g~~~~~~l~---~~i~~~l~~ 166 (167)
T PLN02412 132 FTKFLVSKEGKVVQRYAPTTSPLKIE---KDIQNLLGQ 166 (167)
T ss_pred CeeEEECCCCcEEEEECCCCCHHHHH---HHHHHHHhh
Confidence 68999999999999999999988754 456666654
No 20
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.56 E-value=1.8e-07 Score=77.80 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=71.2
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEE
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLY 167 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv 167 (265)
+|++.+.+++|+++++.+ ++||+.||.+| ++||. |.. .++ ..++++|
T Consensus 2 ~~~f~l~d~~G~~v~l~~------------~~Gk~vvl~fw---------atwC~-C~~e~p~l~~l~~~~~-~~~~~vv 58 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSK------------YKGKVLLIVNV---------ASKCG-FTPQYEGLEALYEKYK-DRGLVVL 58 (152)
T ss_pred cceeEEECCCCCEEeHHH------------hCCCEEEEEEE---------cCCCC-chHHHHHHHHHHHHhc-CCCEEEE
Confidence 689999999999987653 36898887555 89998 763 222 2469999
Q ss_pred EEecccc--h---hhccccchHHHHHHHHhcCCCCCccccceeEEEc-C-ChHHHHHHhcccCCc--------cc---EE
Q 024610 168 EVSFIDS--W---LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSF-G-DHYYFRKELKILNLL--------TG---YI 229 (265)
Q Consensus 168 ~In~~e~--~---lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~-g-~~~~iRe~Lgi~N~~--------vG---YV 229 (265)
.||..+. . -... ++.+ +.+..+-. ..++.- + +.....+.++..... ++ .+
T Consensus 59 ~v~~~~~~~~~~~~~~~--~~~f----~~~~~~~~------fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~tt 126 (152)
T cd00340 59 GFPCNQFGGQEPGSNEE--IKEF----CETNYGVT------FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTK 126 (152)
T ss_pred EeccCccccCCCCCHHH--HHHH----HHHhcCCC------ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEE
Confidence 9997531 0 0001 2333 22211111 122110 0 111112222221111 11 69
Q ss_pred EEEeCCCcEEEcccCCCCHHHHHH
Q 024610 230 FLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 230 yLVD~~grIRWagsG~at~~E~e~ 253 (265)
||||++|+|+|+..|..+++|++.
T Consensus 127 flId~~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 127 FLVDRDGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEECCCCcEEEEECCCCCHHHHHh
Confidence 999999999999999999988764
No 21
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.52 E-value=4.6e-07 Score=73.34 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hH----------HhhccC--CCe
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FF----------EAFSDS--KNV 164 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~----------e~~~~~--~~v 164 (265)
+|++.+.+.+|+++++.+ ++||++||.++ .+||.+ |. +.+.+. .++
T Consensus 2 ~p~f~l~~~~g~~~~l~~------------~~gk~~vl~f~---------~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v 60 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSD------------LKGKPVLVYFG---------YTHCPDVCPTTLANLAQALKQLGADGGDDV 60 (142)
T ss_pred CCceEEEcCCCCEEchHH------------hCCCEEEEEEE---------cCCCcccCHHHHHHHHHHHHHhhHhhcCce
Confidence 699999999999987542 25899888665 889987 75 234443 369
Q ss_pred eEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC---hHHHHHHhcccCCc------------ccE
Q 024610 165 HLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD---HYYFRKELKILNLL------------TGY 228 (265)
Q Consensus 165 qiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~------------vGY 228 (265)
+++.|+++... .... ++.+ +.+ .+.. + ..+ .++ ...+-+++|+.... ++.
T Consensus 61 ~~v~vs~d~~~d~~~~--~~~~----~~~-~~~~----~-~~l--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 126 (142)
T cd02968 61 QVVFISVDPERDTPEV--LKAY----AKA-FGPG----W-IGL--TGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAA 126 (142)
T ss_pred EEEEEEECCCCCCHHH--HHHH----HHH-hCCC----c-EEE--ECCHHHHHHHHHHhcEEEEecCCCCCceeEeccce
Confidence 99999997531 1011 2222 111 2211 1 112 233 36788899976543 467
Q ss_pred EEEEeCCCcEEEcccC
Q 024610 229 IFLLDKFGRIRWQGFG 244 (265)
Q Consensus 229 VyLVD~~grIRWagsG 244 (265)
+||||++|+|+++-.|
T Consensus 127 ~~lid~~G~i~~~~~~ 142 (142)
T cd02968 127 IYLVDPDGKLVRYYGG 142 (142)
T ss_pred EEEECCCCCEEEeecC
Confidence 9999999999997543
No 22
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.52 E-value=1.5e-06 Score=73.84 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=80.5
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHH-------hhccCCCee
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFE-------AFSDSKNVH 165 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e-------~~~~~~~vq 165 (265)
.....|++.+.+.+|+++++.+ ++||+.||.+| .+| |.+|.. ...+..+++
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~------------~~Gk~vvl~f~---------~s~~cp~C~~e~~~l~~~~~~~~~~~ 78 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLAD------------FAGKRKVLNIF---------PSIDTGVCATSVRKFNQEAAELDNTV 78 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHH------------hCCCEEEEEEE---------cCCCCCccHHHHHHHHHHHHHcCCcE
Confidence 4677899999999999987542 36898888665 788 677763 222325899
Q ss_pred EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCCc-------ccEEEEEeCCCc
Q 024610 166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNLL-------TGYIFLLDKFGR 237 (265)
Q Consensus 166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~~-------vGYVyLVD~~gr 237 (265)
+|.||.++-.- .+.+ .+..+- . +.....+ ....+-+++|+.-.- ...+||||++|+
T Consensus 79 vv~vs~D~~~~-----~~~f-----~~~~~~-----~-~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~ 142 (167)
T PRK00522 79 VLCISADLPFA-----QKRF-----CGAEGL-----E-NVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNK 142 (167)
T ss_pred EEEEeCCCHHH-----HHHH-----HHhCCC-----C-CceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCe
Confidence 99999875321 2222 121111 1 1111234 234788899985311 128999999999
Q ss_pred EEEcccCC--CCHHHHHHHHHHH
Q 024610 238 IRWQGFGM--ATPEELSSLLSCT 258 (265)
Q Consensus 238 IRWagsG~--at~~E~e~L~k~~ 258 (265)
||+...++ ....+.+.+.+.+
T Consensus 143 I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 143 VVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred EEEEEECCCcCCCCCHHHHHHHh
Confidence 99999664 3334455555443
No 23
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.49 E-value=1.4e-06 Score=86.65 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=88.5
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CCCeeE
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SKNVHL 166 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~~vqi 166 (265)
...|+|.+.+++|+++.+. +||+.||-+| ++||.||... + .. .+++++
T Consensus 36 ~~lP~f~l~D~dG~~v~ls--------------kGKpVvV~FW---------ATWCppCk~emP~L~eL~~e~k~~~v~V 92 (521)
T PRK14018 36 HTLSTLKTADNRPASVYLK--------------KDKPTLIKFW---------ASWCPLCLSELGETEKWAQDAKFSSANL 92 (521)
T ss_pred CCCCCeEeecCCCceeecc--------------CCCEEEEEEE---------cCCCHHHHHHHHHHHHHHHHhccCCeEE
Confidence 3589999999999998642 4899999766 9999998842 2 22 247999
Q ss_pred EEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610 167 YEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 167 v~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~ 245 (265)
|.|++.+.-- +...-++.+ + +.++.. ...+ .++....+-+.+++.- +|.+||||++|+|++...|+
T Consensus 93 I~Vs~~~~~~e~~~~~~~~~----~-~~~~y~-----~~pV-~~D~~~~lak~fgV~g--iPTt~IIDkdGkIV~~~~G~ 159 (521)
T PRK14018 93 ITVASPGFLHEKKDGDFQKW----Y-AGLDYP-----KLPV-LTDNGGTLAQSLNISV--YPSWAIIGKDGDVQRIVKGS 159 (521)
T ss_pred EEEecccccccccHHHHHHH----H-HhCCCc-----ccce-eccccHHHHHHcCCCC--cCeEEEEcCCCeEEEEEeCC
Confidence 9998732100 000002222 1 122210 0112 2466678889999874 99999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 024610 246 ATPEELSSLLSCTS 259 (265)
Q Consensus 246 at~~E~e~L~k~~~ 259 (265)
.+.+|++.+.+-++
T Consensus 160 ~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 160 ISEAQALALIRNPN 173 (521)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887554
No 24
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.46 E-value=1.7e-06 Score=73.48 Aligned_cols=119 Identities=16% Similarity=0.078 Sum_probs=74.6
Q ss_pred ccCCCceeeCCCC----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccC
Q 024610 96 VKFPDLDVSYSDR----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDS 161 (265)
Q Consensus 96 lyFPnl~~~~l~G----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~ 161 (265)
...|+|.+.+.+| +++++.+ ++||+.||.++. .+||.+|. +.|.+
T Consensus 3 ~~aP~f~~~~~~g~~~~~~~~l~~------------~~Gk~vvl~F~~--------~~~c~~C~~~l~~l~~~~~~~~~- 61 (173)
T cd03015 3 KKAPDFKATAVVPNGEFKEISLSD------------YKGKWVVLFFYP--------LDFTFVCPTEIIAFSDRYEEFKK- 61 (173)
T ss_pred CcCCCCEeecccCCCCceEEehHH------------hCCCEEEEEEEC--------CCCCCcCHHHHHHHHHHHHHHHH-
Confidence 4679999998887 6766532 368988885542 57877765 23332
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCc
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGR 237 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~gr 237 (265)
.++++|.|++++... ... +.....+...... ....+ ..+....+-+.+|+... ..+.+||||++|+
T Consensus 62 ~~v~vv~Is~d~~~~-----~~~-~~~~~~~~~~~~~---~~f~~-l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~ 131 (173)
T cd03015 62 LNAEVLGVSTDSHFS-----HLA-WRNTPRKEGGLGK---INFPL-LADPKKKISRDYGVLDEEEGVALRGTFIIDPEGI 131 (173)
T ss_pred CCCEEEEEecCCHHH-----HHH-HHHhhhhhCCccC---cceeE-EECCchhHHHHhCCccccCCceeeEEEEECCCCe
Confidence 579999999876421 111 1222222100000 01112 24666788899998743 4568999999999
Q ss_pred EEEcccCC
Q 024610 238 IRWQGFGM 245 (265)
Q Consensus 238 IRWagsG~ 245 (265)
|+|...+.
T Consensus 132 I~~~~~~~ 139 (173)
T cd03015 132 IRHITVND 139 (173)
T ss_pred EEEEEecC
Confidence 99999765
No 25
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.45 E-value=1.1e-06 Score=71.23 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=73.2
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhh-------cc--CCCeeEEE
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SD--SKNVHLYE 168 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~--~~~vqiv~ 168 (265)
.|++.+.+++|+++++.+. ..++..||. +++ .+||.+|.+.. .+ ..++++|.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~-----------~~~~~~vl~-f~~-------~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~ 62 (149)
T cd02970 2 APDFELPDAGGETVTLSAL-----------LGEGPVVVV-FYR-------GFGCPFCREYLRALSKLLPELDALGVELVA 62 (149)
T ss_pred CCCccccCCCCCEEchHHH-----------hcCCCEEEE-EEC-------CCCChhHHHHHHHHHHHHHHHHhcCeEEEE
Confidence 6999999999999875422 124555554 344 78999887421 11 25799999
Q ss_pred EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC-------------------------
Q 024610 169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN------------------------- 223 (265)
Q Consensus 169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N------------------------- 223 (265)
|+.++.-. ... ..+.... ...+ ..+....+-+++|+..
T Consensus 63 V~~~~~~~-----~~~-----~~~~~~~------~~p~-~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (149)
T cd02970 63 VGPESPEK-----LEA-----FDKGKFL------PFPV-YADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEG 125 (149)
T ss_pred EeCCCHHH-----HHH-----HHHhcCC------CCeE-EECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCC
Confidence 99876321 111 1222221 1223 2466678889999842
Q ss_pred --CcccEEEEEeCCCcEEEcccCC
Q 024610 224 --LLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 224 --~~vGYVyLVD~~grIRWagsG~ 245 (265)
.-.|-+||||++|+|||.+-|.
T Consensus 126 ~~~~~p~~fvid~~g~i~~~~~~~ 149 (149)
T cd02970 126 DGLQLPGVFVIGPDGTILFAHVDR 149 (149)
T ss_pred cccccceEEEECCCCeEEEEecCC
Confidence 3589999999999999998773
No 26
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.42 E-value=2.3e-06 Score=73.68 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=76.2
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~~~v 164 (265)
+..+|+|.+++++|+++++.+ ++||+.||.++ | +|||.||.+. +. ..++
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~------------~~Gk~vvlv~n-~-------atwCp~C~~e~p~l~~l~~~~~-~~gv 75 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSK------------FKGKKAIIVVN-V-------ACKCGLTSDHYTQLVELYKQYK-SQGL 75 (183)
T ss_pred CCcccceEeEcCCCCEEeHHH------------hCCCcEEEEEE-E-------CCCCCchHHHHHHHHHHHHHHh-hCCc
Confidence 346899999999999998653 36898776554 4 8999998732 22 2469
Q ss_pred eEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-----HHHHHHh--------cccCCcc
Q 024610 165 HLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-----YYFRKEL--------KILNLLT 226 (265)
Q Consensus 165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-----~~iRe~L--------gi~N~~v 226 (265)
++|.||..+ .+-... +..+ +.+..+-. |-+... +-.-+.. ..+.+.. ++. .+
T Consensus 76 ~vv~vs~~~~~~~~~~~~~~--~~~f----~~~~~~~~-fpv~~d-~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~--~i 145 (183)
T PTZ00256 76 EILAFPCNQFMEQEPWDEPE--IKEY----VQKKFNVD-FPLFQK-IEVNGENTHEIYKYLRRNSELFQNNTNEAR--QI 145 (183)
T ss_pred EEEEEecccccccCCCCHHH--HHHH----HHHhcCCC-CCCceE-EecCCCCCCHHHHHHHhhCCCCcCccccCc--cc
Confidence 999999642 111011 2332 22211111 100000 0000111 1123332 222 24
Q ss_pred c---EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610 227 G---YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL 262 (265)
Q Consensus 227 G---YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll 262 (265)
+ .+||||++|+|++...|..++++++. .+..||
T Consensus 146 P~~~~tflID~~G~Iv~~~~g~~~~~~l~~---~I~~ll 181 (183)
T PTZ00256 146 PWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ---DIEKLL 181 (183)
T ss_pred CcceEEEEECCCCCEEEEECCCCCHHHHHH---HHHHHh
Confidence 4 47999999999999999988886443 344444
No 27
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.39 E-value=3.9e-06 Score=75.81 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=81.1
Q ss_pred ccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610 90 IPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS 159 (265)
Q Consensus 90 ~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~ 159 (265)
.++......|++.+++++|+++++.+ ++||+.||.+| ++||.+|.. .+.
T Consensus 71 ~~~~~g~~aPdF~l~d~~G~~vsLsd------------~kGK~vvl~Fw---------AswCp~c~~e~p~L~~L~~~~~ 129 (236)
T PLN02399 71 ARAATEKSVHDFTVKDIDGKDVALSK------------FKGKVLLIVNV---------ASKCGLTSSNYSELSHLYEKYK 129 (236)
T ss_pred cchhcCCCCCceEEECCCCCEEeHHH------------hCCCeEEEEEE---------cCCCcchHHHHHHHHHHHHHHh
Confidence 34456667899999999999987653 35898888666 899999863 222
Q ss_pred cCCCeeEEEEecccch---hhccccchHHHHHHHHhcCCCCCccccceeEEE-cCCh-------HH-HHHHhccc-C---
Q 024610 160 DSKNVHLYEVSFIDSW---LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDH-------YY-FRKELKIL-N--- 223 (265)
Q Consensus 160 ~~~~vqiv~In~~e~~---lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~-------~~-iRe~Lgi~-N--- 223 (265)
..++++|.||..+-- ...-.-++.++... .+++ ..++. .+.. +. ++..++.. .
T Consensus 130 -~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~--~g~~--------fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i 198 (236)
T PLN02399 130 -TQGFEILAFPCNQFGGQEPGSNPEIKQFACTR--FKAE--------FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLI 198 (236)
T ss_pred -cCCcEEEEEecccccccCCCCHHHHHHHHHHh--cCCC--------CccccccCCCcchhhHHHHHHHHhcCCccCCcc
Confidence 246999999974210 00000023321111 1111 11110 1111 11 23333321 0
Q ss_pred CcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610 224 LLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL 262 (265)
Q Consensus 224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll 262 (265)
...+.+||||++|+|+++..|..+++|++.. ++.||
T Consensus 199 ~~~PttfLIDk~GkVv~~~~G~~~~~~le~~---I~~lL 234 (236)
T PLN02399 199 KWNFEKFLVDKNGKVVERYPPTTSPFQIEKD---IQKLL 234 (236)
T ss_pred ccCceEEEECCCCcEEEEECCCCCHHHHHHH---HHHHh
Confidence 2246899999999999999999988876544 44444
No 28
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.38 E-value=3.6e-06 Score=70.03 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=68.8
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhc---------cCCCeeEEE
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFS---------DSKNVHLYE 168 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~---------~~~~vqiv~ 168 (265)
|=+|.+.+++|+++++.+ ++||+.||.++ ++||.+|...+. ...+++++.
T Consensus 2 ~~~f~l~~~~G~~~~l~~------------~~Gk~vvv~~~---------as~C~~c~~~~~~l~~l~~~~~~~~~~v~~ 60 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEK------------YRGKVSLVVNV---------ASECGFTDQNYRALQELHRELGPSHFNVLA 60 (153)
T ss_pred cccceeECCCCCEecHHH------------hCCCEEEEEEe---------CCCCCchhhhHHHHHHHHHHHhhCCeEEEE
Confidence 346778889999987653 36999777544 999999874221 124799999
Q ss_pred Eecc-------cchhhccccchHHHHHHHHh--cCCCCCccccceeEEEcCCh-HHHHHHhcccC-CcccE----EEEEe
Q 024610 169 VSFI-------DSWLLCRSPIKRILLKIMRK--SKDAGENVLQRQIVYSFGDH-YYFRKELKILN-LLTGY----IFLLD 233 (265)
Q Consensus 169 In~~-------e~~lk~~~~lk~~~~~~lrk--~~p~~~~~l~~~~~y~~g~~-~~iRe~Lgi~N-~~vGY----VyLVD 233 (265)
||.. ++. .. ++.+ +++ +++- ..+..-.+ .|.. ...-+ .++.. ...+. +||||
T Consensus 61 i~~~~~~~~~~d~~--~~--~~~f----~~~~~~~~f--p~~~d~~~--~~~~~~~~~~-~~~~~~~~~p~~~~~tflID 127 (153)
T TIGR02540 61 FPCNQFGESEPDSS--KE--IESF----ARRNYGVTF--PMFSKIKI--LGSEAEPAFR-FLVDSSKKEPRWNFWKYLVN 127 (153)
T ss_pred EeccccccCCCCCH--HH--HHHH----HHHhcCCCC--CccceEec--CCCCCCcHHH-HHHhcCCCCCCCccEEEEEc
Confidence 9952 211 01 2332 322 2221 01111000 1111 10001 11111 11333 99999
Q ss_pred CCCcEEEcccCCCCHHHHHHH
Q 024610 234 KFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 234 ~~grIRWagsG~at~~E~e~L 254 (265)
++|+|++...|..++++++..
T Consensus 128 ~~G~v~~~~~g~~~~~~l~~~ 148 (153)
T TIGR02540 128 PEGQVVKFWRPEEPVEEIRPE 148 (153)
T ss_pred CCCcEEEEECCCCCHHHHHHH
Confidence 999999999999998876554
No 29
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.35 E-value=3e-06 Score=64.25 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=54.5
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhc-CCCCC
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKS-KDAGE 198 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~-~p~~~ 198 (265)
||+++|-+| ++||.||.+ .+.+..++++|.|++++..- . .+. .+++. .++
T Consensus 1 gK~~ll~fw---------a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~-~---~~~----~~~~~~~~~-- 61 (95)
T PF13905_consen 1 GKPVLLYFW---------ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEE-E---WKK----FLKKNNFPW-- 61 (95)
T ss_dssp TSEEEEEEE----------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHH-H---HHH----HHHTCTTSS--
T ss_pred CCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHH-H---HHH----HHHhcCCCc--
Confidence 688999666 899998863 33445689999999987532 1 122 23433 232
Q ss_pred ccccceeEEEcCC--hHHHHHHhcccCCcccEEEEEeCCCcE
Q 024610 199 NVLQRQIVYSFGD--HYYFRKELKILNLLTGYIFLLDKFGRI 238 (265)
Q Consensus 199 ~~l~~~~~y~~g~--~~~iRe~Lgi~N~~vGYVyLVD~~grI 238 (265)
.++ .+++ ...+.+.+++.. ++.++|||++|+|
T Consensus 62 ----~~~--~~~~~~~~~l~~~~~i~~--iP~~~lld~~G~I 95 (95)
T PF13905_consen 62 ----YNV--PFDDDNNSELLKKYGING--IPTLVLLDPDGKI 95 (95)
T ss_dssp ----EEE--ETTTHHHHHHHHHTT-TS--SSEEEEEETTSBE
T ss_pred ----eEE--eeCcchHHHHHHHCCCCc--CCEEEEECCCCCC
Confidence 222 2333 478999999997 9999999999998
No 30
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.32 E-value=5.9e-06 Score=62.54 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=69.7
Q ss_pred ceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CCCeeEEEEec
Q 024610 101 LDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SKNVHLYEVSF 171 (265)
Q Consensus 101 l~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~~vqiv~In~ 171 (265)
+.+.+++|+++++.. ..||++||.++ .+||.+|... + .. .+++.++.|++
T Consensus 2 ~~~~~~~g~~~~~~~------------~~~k~~ll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~ 60 (116)
T cd02966 2 FSLPDLDGKPVSLSD------------LKGKVVLVNFW---------ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNV 60 (116)
T ss_pred ccccCCCCCEeehHH------------cCCCEEEEEee---------cccChhHHHHhHHHHHHHHHhCCCCeEEEEEEC
Confidence 455677898887542 24788888666 7898887621 1 12 36899999999
Q ss_pred ccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 172 IDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 172 ~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
+.+ .... ++.+ + +..+. ...+ ..+....+.+.+|+.. ++.+||+|++|+|+++-.|
T Consensus 61 d~~-~~~~--~~~~----~-~~~~~------~~~~-~~~~~~~~~~~~~~~~--~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 61 DDD-DPAA--VKAF----L-KKYGI------TFPV-LLDPDGELAKAYGVRG--LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CCC-CHHH--HHHH----H-HHcCC------Ccce-EEcCcchHHHhcCcCc--cceEEEECCCCcEEEEecC
Confidence 874 1111 2332 1 11222 1222 2466678999999984 9999999999999987655
No 31
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.31 E-value=4.1e-06 Score=65.39 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=65.9
Q ss_pred CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhcc--CCCeeEEEEe
Q 024610 99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSD--SKNVHLYEVS 170 (265)
Q Consensus 99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~--~~~vqiv~In 170 (265)
|++.+.+++|+.+++.... .||+.||.++ ++||.+|.+ .+.+ ..+++++.|+
T Consensus 1 p~f~l~~~~G~~~~l~~~~-----------~gk~vvl~F~---------~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~ 60 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS-----------PGRPTLLFFL---------SPTCPVCKKLLPVIRSIARAEADWLDVVLAS 60 (114)
T ss_pred CCceeecCCCCEEEccccc-----------CCCeEEEEEE---------CCCCcchHhHhHHHHHHHHHhcCCcEEEEEe
Confidence 7889999999998865320 3788888655 899998873 2221 2357888665
Q ss_pred cccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 171 FIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 171 ~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
+++.- . ...+ +.+ +++. .+. + + ...+.+.+++.. ++.+||||++|+|++.|
T Consensus 61 -~~~~~-~---~~~~----~~~~~~~~-----~p~-~--~--~~~~~~~~~~~~--~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 61 -DGEKA-E---HQRF----LKKHGLEA-----FPY-V--L--SAELGMAYQVSK--LPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -CCCHH-H---HHHH----HHHhCCCC-----CcE-E--e--cHHHHhhcCCCC--cCeEEEECCCCeEEecc
Confidence 33221 1 1222 111 1111 111 1 2 245889999975 99999999999999986
No 32
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.21 E-value=1.1e-05 Score=71.74 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=82.6
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
.+..+|+|.+.+.+|+..... .++||..|+ ++++ ++||.+|.. .|++ .+
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~------------~~~Gk~vVL-~~~p-------a~~tpvCt~El~~l~~~~~~f~~-~g 62 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPE------------DYAGKWFVL-FSHP-------ADFTPVCTTEFVEFARKANDFKE-LN 62 (215)
T ss_pred CCCCCCCCEeECCCCcEecHH------------HHCCCeEEE-EEeC-------CCCCCcCHHHHHHHHHHHHHHHH-CC
Confidence 345789999999999865422 236886543 4555 899998873 2322 47
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----cccEEEEEeCCCcE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----LTGYIFLLDKFGRI 238 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----~vGYVyLVD~~grI 238 (265)
+++|.||+++-.-.. .+ ..-+++....+ ....++ .+....+-+.+||... .+..+||||++|+|
T Consensus 63 v~vigIS~D~~~~~~-----~w-~~~i~~~~~~~----i~fPil-~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~I 131 (215)
T PRK13599 63 TELIGLSVDQVFSHI-----KW-VEWIKDNTNIA----IPFPVI-ADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTI 131 (215)
T ss_pred CEEEEEeCCCHHHHH-----HH-HHhHHHhcCCC----CceeEE-ECCCchHHHHcCCCccCCCCceeeEEEEECCCCEE
Confidence 999999988742211 11 11122211111 123332 3556788899998632 47899999999999
Q ss_pred EEcccCC-CCHHHHHHHHHHHHhh
Q 024610 239 RWQGFGM-ATPEELSSLLSCTSLL 261 (265)
Q Consensus 239 RWagsG~-at~~E~e~L~k~~~~L 261 (265)
|+..... .++...+.+.++++.|
T Consensus 132 r~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 132 RLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9997543 2333444444555444
No 33
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.20 E-value=1.4e-05 Score=64.15 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=59.9
Q ss_pred CCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhc-cccchHHHHHHHHh-cCC
Q 024610 128 AIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLC-RSPIKRILLKIMRK-SKD 195 (265)
Q Consensus 128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~-~~~lk~~~~~~lrk-~~p 195 (265)
++||+.||.+| ++||.+|.. .+.+ .++++|.|+..+.-... ...++.+ +.+ +++
T Consensus 21 ~~gk~vvl~F~---------a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~----~~~~~~~ 86 (126)
T cd03012 21 LRGKVVLLDFW---------TYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSA----VLRYGIT 86 (126)
T ss_pred hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHH----HHHcCCC
Confidence 36898888665 899998763 2222 46999999874311000 0002222 111 222
Q ss_pred CCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610 196 AGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 196 ~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~ 245 (265)
..+ ..+....+.+.+++. .++.+||+|++|+|+|+..|.
T Consensus 87 --------~p~-~~D~~~~~~~~~~v~--~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 87 --------YPV-ANDNDYATWRAYGNQ--YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred --------CCE-EECCchHHHHHhCCC--cCCeEEEECCCCcEEEEEecC
Confidence 222 246667888999986 589999999999999999886
No 34
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.20 E-value=3.1e-05 Score=67.95 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=81.7
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
.+..+|+|.+.+.+| ++++.+ .+||..|| ++++ .+||.+|.. .|.+ .+
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d------------~~gk~vvL-~~~p-------~~~cp~C~~El~~l~~~~~~f~~-~~ 61 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSK------------YKGKWVLL-FSHP-------ADFTPVCTTEFIAFSRRYEDFKK-LG 61 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHH------------hCCCEEEE-EEEc-------CCCCCCCHHHHHHHHHHHHHHHH-CC
Confidence 345789999988887 565442 25886444 3455 889988763 2332 37
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC----CcccEEEEEeCCCcEE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN----LLTGYIFLLDKFGRIR 239 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----~~vGYVyLVD~~grIR 239 (265)
+++|.||+++..- -+.+ +..+.+..+.+ ....+ ..+....+-+++||.. ..++.+||||++|+||
T Consensus 62 ~~vi~vS~D~~~~-----~~~w-~~~~~~~~g~~----~~fPl-l~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~ 130 (202)
T PRK13190 62 VELVGLSVDSIYS-----HIAW-LRDIEERFGIK----IPFPV-IADIDKELAREYNLIDENSGATVRGVFIIDPNQIVR 130 (202)
T ss_pred CEEEEEeCCCHHH-----HHHH-HHhHHHhcCCC----ceEEE-EECCChHHHHHcCCccccCCcEEeEEEEECCCCEEE
Confidence 9999999886421 1111 11112211110 12233 2466678999999853 2479999999999999
Q ss_pred EcccCCCC-HHHHHHHHHHHHhhh
Q 024610 240 WQGFGMAT-PEELSSLLSCTSLLL 262 (265)
Q Consensus 240 WagsG~at-~~E~e~L~k~~~~Ll 262 (265)
|...+... +...+.+.++++.|+
T Consensus 131 ~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 131 WMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhh
Confidence 98843322 234444455555443
No 35
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.17 E-value=1.4e-05 Score=70.01 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=79.5
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCC-ceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIP-KVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~g-KvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
..+|+|.+.+.+|. +++.+ ++| |..|| ++++ ++||-.|.. .|.+ .++
T Consensus 3 ~~aP~F~~~~~~g~-~~l~d------------~~g~k~vvl-f~~p-------a~~cp~C~~el~~l~~~~~~f~~-~gv 60 (203)
T cd03016 3 DTAPNFEADTTHGP-IKFHD------------YLGDSWGIL-FSHP-------ADFTPVCTTELGAFAKLAPEFKK-RNV 60 (203)
T ss_pred CCCCCeEEecCCCc-EeHHH------------HcCCCEEEE-EEec-------CCCCCcCHHHHHHHHHHHHHHHH-cCC
Confidence 46899999988884 55432 246 54433 4555 888887762 2332 479
Q ss_pred eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc------ccEEEEEeCCCcE
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL------TGYIFLLDKFGRI 238 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~------vGYVyLVD~~grI 238 (265)
++|-||+++... .+. +...+++....+ ....+ ..+....+-+++||.+.. +..+||||++|+|
T Consensus 61 ~vigvS~D~~~~-----~~~-~~~~i~~~~~~~----~~fpi-l~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I 129 (203)
T cd03016 61 KLIGLSVDSVES-----HIK-WIEDIEEYTGVE----IPFPI-IADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKI 129 (203)
T ss_pred EEEEEECCCHHH-----HHH-HHhhHHHhcCCC----CceeE-EECchHHHHHHcCCccccCCCCceeeEEEEECCCCeE
Confidence 999999987421 111 122222221111 11222 245567888999997542 3469999999999
Q ss_pred EEcccCCCC-HHHHHHHHHHHHhh
Q 024610 239 RWQGFGMAT-PEELSSLLSCTSLL 261 (265)
Q Consensus 239 RWagsG~at-~~E~e~L~k~~~~L 261 (265)
||...|..+ +...+.+.+.++.|
T Consensus 130 ~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 130 RLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHH
Confidence 999887543 23344444444444
No 36
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.13 E-value=1.4e-05 Score=64.34 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred eCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC-CCeeEEEEecc
Q 024610 104 SYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS-KNVHLYEVSFI 172 (265)
Q Consensus 104 ~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~-~~vqiv~In~~ 172 (265)
.+++|+++++.+ ++||+.||-++ ++||.+|.+ .+.+. +++++|-|+++
T Consensus 4 ~~~~G~~v~l~~------------~~gk~vll~Fw---------a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d 62 (131)
T cd03009 4 LRNDGGKVPVSS------------LEGKTVGLYFS---------ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD 62 (131)
T ss_pred cccCCCCccHHH------------hCCcEEEEEEE---------CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 467898887642 36898877555 899999873 23332 47999999998
Q ss_pred cchhhccccchHHHHHHHHhcCCCCCccccceeEEEc-CChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 173 DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSF-GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 173 e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~-g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
+..- . ++.. +.+ .++ ...-+.. +....+.+.+|+.. ++.+||+|++|+|++...
T Consensus 63 ~~~~--~--~~~~----~~~-~~~------~~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 63 RDEE--S--FNDY----FSK-MPW------LAVPFSDRERRSRLNRTFKIEG--IPTLIILDADGEVVTTDA 117 (131)
T ss_pred CCHH--H--HHHH----HHc-CCe------eEcccCCHHHHHHHHHHcCCCC--CCEEEEECCCCCEEcccH
Confidence 7531 1 2222 222 232 1111111 22357889999986 999999999999997643
No 37
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.10 E-value=6.9e-05 Score=65.22 Aligned_cols=136 Identities=9% Similarity=-0.009 Sum_probs=82.7
Q ss_pred chhHHHHHhhhcCCeeeeccCccccc-c--ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccc
Q 024610 67 GYFADVAELKKHGGKIATANKIIIPA-L--AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASS 143 (265)
Q Consensus 67 ~yf~D~~~~r~~~GK~f~ap~~l~ka-~--~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~g 143 (265)
|-..|+..+.+++|-.-.++.---.+ . .+..=|+|. .++|+++++.+. + ||. ||
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--l~dG~~v~lsd~--------------~--lV~--Fw--- 77 (181)
T PRK13728 21 STRDEIERLWNPKGMAAQPAQPAADTSARTEKPAPRWFR--LSNGRQVNLADW--------------K--VVL--FM--- 77 (181)
T ss_pred chHHHHHHHHhcccCCCCccccccccccccCCCCCCccC--CCCCCEeehhHc--------------e--EEE--EE---
Confidence 44566777766655444433110000 0 001122332 347999876532 2 554 44
Q ss_pred hHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHH
Q 024610 144 QAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFR 216 (265)
Q Consensus 144 q~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iR 216 (265)
+|||.||.+ .+.+.-+++++.|++++..- . ...++ ++ ....+.
T Consensus 78 ----aswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~------------------~-------~fPv~-~dd~~~~~~ 127 (181)
T PRK13728 78 ----QGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGD------------------T-------AFPEA-LPAPPDVMQ 127 (181)
T ss_pred ----CCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCC------------------C-------CCceE-ecCchhHHH
Confidence 899999884 34444469999999886421 0 12222 33 345577
Q ss_pred HHhcccCCcccEEEEEeCCCcEEE-cccCCCCHHHHHHHH
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRW-QGFGMATPEELSSLL 255 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRW-agsG~at~~E~e~L~ 255 (265)
+.+|..-..++.+||||.+|+|++ .+.|..+.+|++...
T Consensus 128 ~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 128 TFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM 167 (181)
T ss_pred HHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence 788852246999999999999988 799999998886543
No 38
>PRK13189 peroxiredoxin; Provisional
Probab=98.10 E-value=3.8e-05 Score=68.53 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=75.6
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
.+..+|+|.+.+.+|+ +.+. +.++||..|| ++++ .+||-+|.. .|.+ .+
T Consensus 11 vG~~aPdF~~~~~~g~-~~l~-----------d~~~Gk~vvL-~f~p-------a~fcpvC~tEl~~l~~~~~ef~~-~~ 69 (222)
T PRK13189 11 IGDKFPEFEVKTTHGP-IKLP-----------DDYKGKWFVL-FSHP-------ADFTPVCTTEFVAFQKRYDEFRE-LN 69 (222)
T ss_pred CCCcCCCcEeEcCCCC-EeeH-----------HHhCCCeEEE-EEeC-------CCCCCCCHHHHHHHHHHHHHHHH-cC
Confidence 4668999999988885 3322 1236885444 4555 889887762 3332 57
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC-----CcccEEEEEeCCCcE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN-----LLTGYIFLLDKFGRI 238 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N-----~~vGYVyLVD~~grI 238 (265)
+++|.||+++... -..| ...+++..+.+ ....+ ..+....+-+++|+.. ..+..+||||++|+|
T Consensus 70 v~VigvS~D~~~~-----h~aw-~~~~~~~~g~~----i~fPl-lsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~I 138 (222)
T PRK13189 70 TELIGLSIDQVFS-----HIKW-VEWIKEKLGVE----IEFPI-IADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGII 138 (222)
T ss_pred CEEEEEECCCHHH-----HHHH-HHhHHHhcCcC----cceeE-EEcCccHHHHHhCCCccccCCCceeEEEEECCCCeE
Confidence 9999999987432 1111 22223321111 12333 2355678889999873 245789999999999
Q ss_pred EEcccCCC
Q 024610 239 RWQGFGMA 246 (265)
Q Consensus 239 RWagsG~a 246 (265)
||..-+..
T Consensus 139 r~~~~~~~ 146 (222)
T PRK13189 139 RAILYYPQ 146 (222)
T ss_pred EEEEecCC
Confidence 99987544
No 39
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.06 E-value=3.6e-05 Score=68.40 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=82.9
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
....+|+|.+.+.+|+.. +. +.++||..|| ++++ .+||-+|.. .|.+ .+
T Consensus 9 iG~~aPdF~l~~~~G~~~-l~-----------~~~~GK~vvL-ff~p-------a~ftpvC~tEl~~l~~~~~ef~~-~g 67 (215)
T PRK13191 9 IGEKFPEMEVITTHGKIK-LP-----------DDYKGRWFVL-FSHP-------GDFTPVCTTEFYSFAKKYEEFKK-LN 67 (215)
T ss_pred CCCcCCCCEeecCCCCEE-cH-----------HHhCCCcEEE-EEeC-------CCCCCcCHHHHHHHHHHHHHHHH-CC
Confidence 456799999998888642 21 1236886544 4555 889887762 3332 47
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----cccEEEEEeCCCcE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----LTGYIFLLDKFGRI 238 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----~vGYVyLVD~~grI 238 (265)
+++|.||+++.... +.| ...+++...-+ ....+ ..+....+-+.+||.+. ....+||||++|+|
T Consensus 68 ~~VigvS~Ds~~~h-----~aw-~~~~~~~~~~~----i~fPl-lsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~I 136 (215)
T PRK13191 68 TELIGLSVDSNISH-----IEW-VMWIEKNLKVE----VPFPI-IADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTV 136 (215)
T ss_pred CEEEEEECCCHHHH-----HHH-HhhHHHhcCCC----CceEE-EECCchHHHHHcCCcccccCCceeEEEEEECCCCEE
Confidence 99999998764321 111 11123211111 12333 23556789999998642 36789999999999
Q ss_pred EEcccCC-CCHHHHHHHHHHHHhh
Q 024610 239 RWQGFGM-ATPEELSSLLSCTSLL 261 (265)
Q Consensus 239 RWagsG~-at~~E~e~L~k~~~~L 261 (265)
|+...+. ..+..++.+.+.++.|
T Consensus 137 r~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 137 RLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHh
Confidence 9987655 3334555555555544
No 40
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.02 E-value=6.5e-05 Score=64.95 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=71.1
Q ss_pred cccCCCceeeC-CCCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610 95 AVKFPDLDVSY-SDRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS 161 (265)
Q Consensus 95 AlyFPnl~~~~-l~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~ 161 (265)
....|+|.+.+ .+|+ ++++. .++||++||.+ +. .+||.+|.. .|. .
T Consensus 5 G~~aP~f~l~~~~~g~~~~~sl~------------d~~Gk~vvl~F--~p------~~~cp~C~~el~~l~~~~~~~~-~ 63 (187)
T TIGR03137 5 NTEIKPFKATAYHNGEFVEVTDE------------DVKGKWSVFFF--YP------ADFTFVCPTELEDLADKYAELK-K 63 (187)
T ss_pred CCcCCCcEeeeccCCceeEecHH------------HHCCCEEEEEE--EC------CCcCCcCHHHHHHHHHHHHHHH-h
Confidence 45689999888 4776 34322 24689877743 32 688887762 233 2
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCc
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGR 237 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~gr 237 (265)
.++++|-||.++... .+.+ ...... .. + ....++ .+....+-+.+|+... ....+||||++|+
T Consensus 64 ~gv~vi~VS~D~~~~-----~~~~-~~~~~~-~~-~----l~fpll-sD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~ 130 (187)
T TIGR03137 64 LGVEVYSVSTDTHFV-----HKAW-HDTSEA-IG-K----ITYPML-GDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGV 130 (187)
T ss_pred cCCcEEEEeCCCHHH-----HHHH-Hhhhhh-cc-C----cceeEE-ECCccHHHHHhCCcccCCCceeeEEEEECCCCE
Confidence 479999999887422 1111 111110 00 0 112232 3556788889998643 3578999999999
Q ss_pred EEEcccC
Q 024610 238 IRWQGFG 244 (265)
Q Consensus 238 IRWagsG 244 (265)
||+...+
T Consensus 131 I~~~~~~ 137 (187)
T TIGR03137 131 IQAVEIT 137 (187)
T ss_pred EEEEEEe
Confidence 9999754
No 41
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.99 E-value=7.2e-05 Score=80.36 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=86.8
Q ss_pred ccccccCCCceeeC--CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-cc--
Q 024610 92 ALAAVKFPDLDVSY--SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD-- 160 (265)
Q Consensus 92 a~~AlyFPnl~~~~--l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~-- 160 (265)
.......|+|...+ ++|+++++- ..++||+.||-+| ++||.||.. .+ ++
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~-----------~~lkGK~vll~FW---------AsWC~pC~~e~P~L~~l~~~y~ 450 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFR-----------RDLKGKVVILDFW---------TYCCINCMHVLPDLEFLEKKYK 450 (1057)
T ss_pred cccCCcCCCCcccccccCCccccch-----------hhcCCCEEEEEEE---------CCcChhHHhHhHHHHHHHHHcC
Confidence 44567888888765 678766532 1246999999666 999999973 11 22
Q ss_pred CCCeeEEEEecc---cchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCc
Q 024610 161 SKNVHLYEVSFI---DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGR 237 (265)
Q Consensus 161 ~~~vqiv~In~~---e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~gr 237 (265)
..++++|.|+.. +..-+.. ++.++ .+.++.. .++ .+....+-+.+++.- +|.+||+|++|+
T Consensus 451 ~~~~~vvgV~~~~~D~~~~~~~--~~~~~---~~~~i~~--------pvv-~D~~~~~~~~~~V~~--iPt~ilid~~G~ 514 (1057)
T PLN02919 451 DQPFTVVGVHSAKFDNEKDLEA--IRNAV---LRYNISH--------PVV-NDGDMYLWRELGVSS--WPTFAVVSPNGK 514 (1057)
T ss_pred CCCeEEEEEecccccccccHHH--HHHHH---HHhCCCc--------cEE-ECCchHHHHhcCCCc--cceEEEECCCCe
Confidence 245899999742 2111111 23321 2223332 121 355566778899874 999999999999
Q ss_pred EEEcccCCCCHHHHHHHHHHH
Q 024610 238 IRWQGFGMATPEELSSLLSCT 258 (265)
Q Consensus 238 IRWagsG~at~~E~e~L~k~~ 258 (265)
|++...|....++++.+...+
T Consensus 515 iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 515 LIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred EEEEEecccCHHHHHHHHHHH
Confidence 999999999998888776654
No 42
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.90 E-value=0.0002 Score=60.92 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=90.3
Q ss_pred cCCCceeeC-----CCCCeeeccCCCCCCccCccccCCCceEEEE-EeeeccchHHHhhhcchhHHhhccCCCeeEEE-E
Q 024610 97 KFPDLDVSY-----SDRTTLKLPVCSSGDVANADKAAIPKVSLVC-LTFRASSQAMVDSWSSPFFEAFSDSKNVHLYE-V 169 (265)
Q Consensus 97 yFPnl~~~~-----l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~-l~~~~~gq~~~~sw~~p~~e~~~~~~~vqiv~-I 169 (265)
..|.+.+.+ |+|..++...= .+..+.|||=||- |.-+.++.+|-+.....+.++--.+..+|... |
T Consensus 6 ~~p~V~v~d~Gel~l~~~~~~y~~W-------~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIi 78 (160)
T PF09695_consen 6 PVPPVTVADKGELILNGDKISYQPW-------NSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTII 78 (160)
T ss_pred cCCceEecCCceEEEcCCccccccc-------CccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEE
Confidence 457776654 56666665432 1345789998874 44455666665555555544412223466554 4
Q ss_pred ecccchhhccccchHHHHHH-HHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCH
Q 024610 170 SFIDSWLLCRSPIKRILLKI-MRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATP 248 (265)
Q Consensus 170 n~~e~~lk~~~~lk~~~~~~-lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~ 248 (265)
|++|.-+ .-+.|+++ +++..-+-. |.+.+ +|....+|.+-++...... |.++|.+|+|+|+..|.-++
T Consensus 79 N~dDAi~-----gt~~fVrss~e~~kk~~p---~s~~v--lD~~G~~~~aW~L~~~~Sa-iiVlDK~G~V~F~k~G~Ls~ 147 (160)
T PF09695_consen 79 NLDDAIW-----GTGGFVRSSAEDSKKEFP---WSQFV--LDSNGVVRKAWQLQEESSA-IIVLDKQGKVQFVKEGALSP 147 (160)
T ss_pred ecccccc-----cchHHHHHHHHHhhhhCC---CcEEE--EcCCCceeccccCCCCCce-EEEEcCCccEEEEECCCCCH
Confidence 6666422 23344444 444432210 23333 5777789999998874444 77999999999999999999
Q ss_pred HHHHHHHHHHH
Q 024610 249 EELSSLLSCTS 259 (265)
Q Consensus 249 ~E~e~L~k~~~ 259 (265)
+|++....-++
T Consensus 148 ~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 148 AEVQQVIALLK 158 (160)
T ss_pred HHHHHHHHHHh
Confidence 99998776554
No 43
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.89 E-value=0.00011 Score=59.47 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred CCCceEEEEEeeeccchHHHhhhcchhHHh----------hccC-CCeeEEEEecccchhhccccchHHHHHHHHhcCCC
Q 024610 128 AIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA 196 (265)
Q Consensus 128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~ 196 (265)
++||+.||-++ ++||.+|.+. +.+. ++++++-|+++++.- . ++.+ +++ .+
T Consensus 15 ~~Gk~vll~F~---------atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~--~--~~~~----~~~-~~- 75 (132)
T cd02964 15 LEGKTVGLYFS---------ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEE--S--FNEY----FSE-MP- 75 (132)
T ss_pred hCCCEEEEEEE---------CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHH--H--HHHH----Hhc-CC-
Confidence 46899888666 9999998742 2333 479999999987531 1 2332 222 21
Q ss_pred CCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 197 GENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 197 ~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
. +..+. +.+ ...+.+.+++.- ++.+||+|.+|+|+....+
T Consensus 76 ~----~~~~~--~~d~~~~~~~~~~~~v~~--iPt~~lid~~G~iv~~~~~ 118 (132)
T cd02964 76 P----WLAVP--FEDEELRELLEKQFKVEG--IPTLVVLKPDGDVVTTNAR 118 (132)
T ss_pred C----eEeec--cCcHHHHHHHHHHcCCCC--CCEEEEECCCCCEEchhHH
Confidence 1 11221 233 357888899875 8999999999999966543
No 44
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.87 E-value=6.6e-05 Score=63.14 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=58.2
Q ss_pred cCCCceEEEEEeeeccchHHHhhhcchhHHh----------hc------cCCCeeEEEEecccchhhccccchHHHHHHH
Q 024610 127 AAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FS------DSKNVHLYEVSFIDSWLLCRSPIKRILLKIM 190 (265)
Q Consensus 127 ~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~------~~~~vqiv~In~~e~~lk~~~~lk~~~~~~l 190 (265)
.++||+.+|-+| +|||.||.+. +. ...++++|.||++++.- . ++.+ +..+
T Consensus 22 ~~kgk~vlL~Fw---------AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~--~--~~~f-~~~~ 87 (146)
T cd03008 22 RLENRVLLLFFG---------AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ--Q--QESF-LKDM 87 (146)
T ss_pred HhCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH--H--HHHH-HHHC
Confidence 468999998666 9999998742 22 12369999999987531 1 2332 1111
Q ss_pred HhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEc
Q 024610 191 RKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 191 rk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWa 241 (265)
++++ ..+.+..+....+.+.+++.. +|++||||++|+|+=.
T Consensus 88 --~~~~------~~~p~~~~~~~~l~~~y~v~~--iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 --PKKW------LFLPFEDEFRRELEAQFSVEE--LPTVVVLKPDGDVLAA 128 (146)
T ss_pred --CCCc------eeecccchHHHHHHHHcCCCC--CCEEEEECCCCcEEee
Confidence 1222 111111122357889999975 9999999999999944
No 45
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.85 E-value=0.0002 Score=65.64 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=73.1
Q ss_pred cccccCCCceeeC-CCCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610 93 LAAVKFPDLDVSY-SDRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS 159 (265)
Q Consensus 93 ~~AlyFPnl~~~~-l~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~ 159 (265)
..+..+|+|.+.+ .+|+ ++++. +..+||..|+ +|++ .+||.+|.. .|.
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLs-----------d~~kgk~vVL-~FyP-------a~ftpvCt~El~~l~~~~~ef~ 129 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSS-----------DYFKDSYGLL-VFYP-------LDFTFVCPSELLGFSERLKEFE 129 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHH-----------HHcCCCeEEE-EEEC-------CCCCCCCHHHHHHHHHHHHHHH
Confidence 4567789999877 5664 34432 2225775544 3344 788888763 333
Q ss_pred cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCCC
Q 024610 160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKFG 236 (265)
Q Consensus 160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~g 236 (265)
+ .++++|-||+++-... +.+ ....++...... ....+ ..|....+-+++|+.+ ....++||||++|
T Consensus 130 ~-~gv~VigIS~Ds~~~h-----~aw-~~~~~~~~g~~~---l~fPl-LsD~~~~iakayGv~~~~g~a~R~tFIID~dG 198 (261)
T PTZ00137 130 E-RGVKVLGVSVDSPFSH-----KAW-KELDVRQGGVSP---LKFPL-FSDISREVSKSFGLLRDEGFSHRASVLVDKAG 198 (261)
T ss_pred H-CCCEEEEEECCCHHHH-----HHH-HhhhhhhccccC---cceEE-EEcCChHHHHHcCCCCcCCceecEEEEECCCC
Confidence 2 4799999999874221 111 111112111110 12333 2355678999999865 2478999999999
Q ss_pred cEEEccc
Q 024610 237 RIRWQGF 243 (265)
Q Consensus 237 rIRWags 243 (265)
+||+...
T Consensus 199 ~I~~~~~ 205 (261)
T PTZ00137 199 VVKHVAV 205 (261)
T ss_pred EEEEEEE
Confidence 9999884
No 46
>PRK15000 peroxidase; Provisional
Probab=97.84 E-value=0.00019 Score=63.04 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=80.5
Q ss_pred cccCCCceeeCCC--CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCC
Q 024610 95 AVKFPDLDVSYSD--RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSK 162 (265)
Q Consensus 95 AlyFPnl~~~~l~--G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~ 162 (265)
...+|+|.+.+.. |+.+..- +..+-.+||..||. |++ ..||.+|. +.|.+ .
T Consensus 5 g~~aPdF~~~~~~~~g~~~~~~--------~l~~~~~gk~vvL~--F~p------~~~t~vC~~El~~l~~~~~~f~~-~ 67 (200)
T PRK15000 5 TRQAPDFTAAAVLGSGEIVDKF--------NFKQHTNGKTTVLF--FWP------MDFTFVCPSELIAFDKRYEEFQK-R 67 (200)
T ss_pred CCcCCCCEeecccCCCceeeee--------eHHHHhCCCEEEEE--EEC------CCCCCCCHHHHHHHHHHHHHHHH-C
Confidence 4568999988764 4543211 11112268987774 442 35777665 23433 4
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCcE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGRI 238 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~grI 238 (265)
++++|.||+++.... +.+ ....++...-++ ....++ .+....+-+.+|+.+. ....+||||++|+|
T Consensus 68 g~~vigvS~D~~~~~-----~~w-~~~~~~~~g~~~---i~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I 137 (200)
T PRK15000 68 GVEVVGVSFDSEFVH-----NAW-RNTPVDKGGIGP---VKYAMV-ADVKREIQKAYGIEHPDEGVALRGSFLIDANGIV 137 (200)
T ss_pred CCEEEEEECCCHHHH-----HHH-HhhHHHhCCccc---cCceEE-ECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEE
Confidence 799999998864321 111 111222111000 123332 3556788889998743 47899999999999
Q ss_pred EEcccCCCCH-HHHHHHHHHHHhh
Q 024610 239 RWQGFGMATP-EELSSLLSCTSLL 261 (265)
Q Consensus 239 RWagsG~at~-~E~e~L~k~~~~L 261 (265)
|....|..+. ..++.+.+.++.|
T Consensus 138 ~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 138 RHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHh
Confidence 9998886433 3444444544443
No 47
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.77 E-value=0.0003 Score=61.30 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=77.6
Q ss_pred cccCCCceeeC----CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610 95 AVKFPDLDVSY----SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD 160 (265)
Q Consensus 95 AlyFPnl~~~~----l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~ 160 (265)
....|+|.+.+ .+|+++++.+ ++||..|| +|++ .+||..|. +.|.+
T Consensus 9 G~~aPdF~~~~~~~~~~~~~v~l~d------------~~Gk~~lL--~F~p------~~~~~~C~~e~~~l~~~~~~f~~ 68 (199)
T PTZ00253 9 NHPAPSFEEVALMPNGSFKKISLSS------------YKGKWVVL--FFYP------LDFTFVCPTEIIQFSDSVKRFNE 68 (199)
T ss_pred CCcCCCCEeeccccCCCCcEEeHHH------------HCCCEEEE--EEEc------CCCCCcCHHHHHHHHHHHHHHHH
Confidence 44678998665 3456776542 36898777 3442 45555443 33433
Q ss_pred CCCeeEEEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcc----cEEEEEeCC
Q 024610 161 SKNVHLYEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLT----GYIFLLDKF 235 (265)
Q Consensus 161 ~~~vqiv~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~v----GYVyLVD~~ 235 (265)
.++++|.||.++... +.| .+......+... ....+ ..+....+-+.+|+.+... .-+||||++
T Consensus 69 -~g~~vv~IS~d~~~~~~~~-----~~~~~~~~~~~~-----~~fpl-l~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~ 136 (199)
T PTZ00253 69 -LNCEVLACSMDSEYAHLQW-----TLQERKKGGLGT-----MAIPM-LADKTKSIARSYGVLEEEQGVAYRGLFIIDPK 136 (199)
T ss_pred -cCCEEEEEeCCCHHHHHHH-----HhChHhhCCccc-----cccce-EECcHhHHHHHcCCcccCCCceEEEEEEECCC
Confidence 379999999876432 111 000001111111 11222 3567788999999975433 468999999
Q ss_pred CcEEEcccCC-CCHHHHHHHHHHHHh
Q 024610 236 GRIRWQGFGM-ATPEELSSLLSCTSL 260 (265)
Q Consensus 236 grIRWagsG~-at~~E~e~L~k~~~~ 260 (265)
|+||+...+. +.+..++.+.+.++.
T Consensus 137 G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 137 GMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred CEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 9999998774 344444444444443
No 48
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.58 E-value=0.00059 Score=59.46 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=70.3
Q ss_pred ccccCCCceeeCC-CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 94 AAVKFPDLDVSYS-DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 94 ~AlyFPnl~~~~l-~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
-..++|+|.+... +|.-.... ...++||+.||.++ . .+||.+|.. .|.+ .
T Consensus 4 ~~~~~p~f~~~~~~~g~~~~v~----------L~d~~Gk~vvL~F~--P------~~~~p~C~~el~~l~~~~~~f~~-~ 64 (187)
T PRK10382 4 INTKIKPFKNQAFKNGEFIEVT----------EKDTEGRWSVFFFY--P------ADFTFVCPTELGDVADHYEELQK-L 64 (187)
T ss_pred cCCcCCCcEEEEEeCCcceEEE----------HHHhCCCeEEEEEE--C------CCCCCcCHHHHHHHHHHHHHHHh-C
Confidence 3467899986543 34332211 12357997666443 2 677776652 2322 4
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC----CcccEEEEEeCCCcE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN----LLTGYIFLLDKFGRI 238 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----~~vGYVyLVD~~grI 238 (265)
+++++-||.++-.. .+.| ....+. +. + ....+. .+....+-+++|+.. .....+||||++|+|
T Consensus 65 g~~vigIS~D~~~~-----~~a~-~~~~~~-~~-~----l~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I 131 (187)
T PRK10382 65 GVDVYSVSTDTHFT-----HKAW-HSSSET-IA-K----IKYAMI-GDPTGALTRNFDNMREDEGLADRATFVVDPQGII 131 (187)
T ss_pred CCEEEEEeCCCHHH-----HHHH-HHhhcc-cc-C----CceeEE-EcCchHHHHHcCCCcccCCceeeEEEEECCCCEE
Confidence 79999999876432 1222 111111 10 0 123332 466788999999853 234899999999999
Q ss_pred EEcccCC
Q 024610 239 RWQGFGM 245 (265)
Q Consensus 239 RWagsG~ 245 (265)
|+.....
T Consensus 132 ~~~~~~~ 138 (187)
T PRK10382 132 QAIEVTA 138 (187)
T ss_pred EEEEEeC
Confidence 9996543
No 49
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.58 E-value=0.00045 Score=58.43 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=56.1
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR 203 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~ 203 (265)
++..||-+| +|||.||.+ .+.+.-+++++.||+++.... ..|
T Consensus 50 ~~~~lvnFW---------AsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~---------------~fp-------- 97 (153)
T TIGR02738 50 DDYALVFFY---------QSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLT---------------GFP-------- 97 (153)
T ss_pred CCCEEEEEE---------CCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCccc---------------ccc--------
Confidence 345577554 999999983 344444689999998874211 011
Q ss_pred eeEEEcCC-hHHHHHHh---cccCCcccEEEEEeCCCcEEE-cccCCCCHHHHHHH
Q 024610 204 QIVYSFGD-HYYFRKEL---KILNLLTGYIFLLDKFGRIRW-QGFGMATPEELSSL 254 (265)
Q Consensus 204 ~~~y~~g~-~~~iRe~L---gi~N~~vGYVyLVD~~grIRW-agsG~at~~E~e~L 254 (265)
. .++. .......+ ++. .+|.+||||++|++++ .+.|..+.++++..
T Consensus 98 ~---~~~~~~~~~~~~~~~~~v~--~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~ 148 (153)
T TIGR02738 98 D---PLPATPEVMQTFFPNPRPV--VTPATFLVNVNTRKAYPVLQGAVDEAELANR 148 (153)
T ss_pred c---ccCCchHHHHHHhccCCCC--CCCeEEEEeCCCCEEEEEeecccCHHHHHHH
Confidence 0 0121 12233344 443 5899999999999766 78999999887654
No 50
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.41 E-value=0.0012 Score=54.77 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh------hcc-C-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------FSD-S-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV 200 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~~~-~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~ 200 (265)
.||+.||-++ ++||.+|... +.+ . ..++++.|++++...
T Consensus 19 ~gk~vvV~F~---------A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~------------------------ 65 (142)
T cd02950 19 NGKPTLVEFY---------ADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW------------------------ 65 (142)
T ss_pred CCCEEEEEEE---------CCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc------------------------
Confidence 5788888665 8999998731 111 1 235666666654210
Q ss_pred ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHH
Q 024610 201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSC 257 (265)
Q Consensus 201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~ 257 (265)
..+-+.+++.. ++.++++|.+|++++...|..+.+|++.+...
T Consensus 66 ------------~~~~~~~~V~~--iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~ 108 (142)
T cd02950 66 ------------LPEIDRYRVDG--IPHFVFLDREGNEEGQSIGLQPKQVLAQNLDA 108 (142)
T ss_pred ------------HHHHHHcCCCC--CCEEEEECCCCCEEEEEeCCCCHHHHHHHHHH
Confidence 12335567775 99999999999999999999998887665543
No 51
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.31 E-value=0.0021 Score=55.02 Aligned_cols=123 Identities=19% Similarity=0.174 Sum_probs=67.8
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh--cchhHHhhcc-CCCeeEEEEe
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW--SSPFFEAFSD-SKNVHLYEVS 170 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw--~~p~~e~~~~-~~~vqiv~In 170 (265)
....-|++++.|.+|++++.. .++||++||.++++.=..-|-.+- .....+.+.+ ..++++|-|+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~------------~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~IS 95 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLD------------DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFIS 95 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGG------------GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCccCCCcEEEcCCCCEecHH------------HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEE
Confidence 566788999999999999853 247999999988764322211110 0012233333 4689999999
Q ss_pred cccchh-hccccchHHHHHHHHhcCCCCCccccceeEE-EcCChHHHHHHhcccC--------------CcccEEEEEeC
Q 024610 171 FIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVY-SFGDHYYFRKELKILN--------------LLTGYIFLLDK 234 (265)
Q Consensus 171 ~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y-~~g~~~~iRe~Lgi~N--------------~~vGYVyLVD~ 234 (265)
++...= ... ++.. .+..+.. + ..++ .-++..++.+.+++.. .+++.+||||+
T Consensus 96 vDP~~DTp~~--L~~Y-----~~~~~~~----~-~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp 163 (174)
T PF02630_consen 96 VDPERDTPEV--LKKY-----AKKFGPD----F-IGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDP 163 (174)
T ss_dssp SSTTTC-HHH--HHHH-----HHCHTTT----C-EEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-T
T ss_pred eCCCCCCHHH--HHHH-----HHhcCCC----c-ceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcC
Confidence 985431 111 3332 2222221 0 1111 0122244555555432 26789999999
Q ss_pred CCcEEE
Q 024610 235 FGRIRW 240 (265)
Q Consensus 235 ~grIRW 240 (265)
+||||=
T Consensus 164 ~G~i~~ 169 (174)
T PF02630_consen 164 DGRIRA 169 (174)
T ss_dssp TSEEEE
T ss_pred CCcEEE
Confidence 999983
No 52
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0056 Score=52.23 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=81.0
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------HhhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~~~~v 164 (265)
....|+|.+.+-+|+++++.+ ++||..|+-++ - ..|+..|. +.|... ++
T Consensus 7 G~~aPdF~Lp~~~g~~v~Lsd------------~~Gk~VVLyFY-P-------k~~TpgCT~Ea~~Frd~~~ef~~~-~a 65 (157)
T COG1225 7 GDKAPDFELPDQDGETVSLSD------------LRGKPVVLYFY-P-------KDFTPGCTTEACDFRDLLEEFEKL-GA 65 (157)
T ss_pred CCcCCCeEeecCCCCEEehHH------------hcCCcEEEEEC-C-------CCCCCcchHHHHHHHHHHHHHHhC-CC
Confidence 456899999999999988763 36895555443 2 34444443 234444 89
Q ss_pred eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc----------EEEEEeC
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----------YIFLLDK 234 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----------YVyLVD~ 234 (265)
+++-||.+.-.- .+++ +.... |. ..+ ..+....+-+++|+-....+ -+||||+
T Consensus 66 ~V~GIS~Ds~~~-----~~~F-----~~k~~-----L~-f~L-LSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~ 128 (157)
T COG1225 66 VVLGISPDSPKS-----HKKF-----AEKHG-----LT-FPL-LSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDP 128 (157)
T ss_pred EEEEEeCCCHHH-----HHHH-----HHHhC-----CC-cee-eECCcHHHHHHhCcccccccCccccccccceEEEECC
Confidence 999999987432 1222 11111 11 223 23666778999998775443 4899999
Q ss_pred CCcEEEcccCCCCHHHHHHHHHHHHhh
Q 024610 235 FGRIRWQGFGMATPEELSSLLSCTSLL 261 (265)
Q Consensus 235 ~grIRWagsG~at~~E~e~L~k~~~~L 261 (265)
+|+||.+-.........+...+.++.|
T Consensus 129 dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 129 DGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 999998886655554444444444443
No 53
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.15 E-value=0.0027 Score=58.41 Aligned_cols=93 Identities=23% Similarity=0.182 Sum_probs=66.6
Q ss_pred ccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCc
Q 024610 126 KAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGEN 199 (265)
Q Consensus 126 ~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~ 199 (265)
..+.|++.||-++ ++||.+|.. .+.+.-+++++-||++++-.. ..|.
T Consensus 162 ~~l~~k~~Lv~F~---------AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~---------------~fp~--- 214 (271)
T TIGR02740 162 KDLAKKSGLFFFF---------KSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLP---------------GFPN--- 214 (271)
T ss_pred HHhcCCeEEEEEE---------CCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccc---------------cCCc---
Confidence 3467898888555 899998873 455444689999998774221 0121
Q ss_pred cccceeEEEcCChHHHHHHhcccCCcccEEEEEeC-CCcEEEcccCCCCHHHHHHHHH
Q 024610 200 VLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDK-FGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 200 ~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~-~grIRWagsG~at~~E~e~L~k 256 (265)
+.+...+.+.+|+.. ++-+||||+ .|+|+..+.|..+.+|++....
T Consensus 215 ---------~~~d~~la~~~gV~~--vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 215 ---------ARPDAGQAQQLKIRT--VPAVFLADPDPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred ---------ccCCHHHHHHcCCCc--CCeEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence 122345778999965 999999998 5889999999999998765443
No 54
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.10 E-value=0.0071 Score=52.63 Aligned_cols=54 Identities=13% Similarity=-0.001 Sum_probs=40.8
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccCCCeeEE
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDSKNVHLY 167 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~~~vqiv 167 (265)
.++++.+++++|+++++.+ ++||+.||..+ +|||.+|.+ .++ ..+++++
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~------------~~GKvvLVvf~---------AS~C~~~~q~~~L~~L~~~y~-~~gl~Vl 61 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEK------------YAGNVLLIVNV---------ASKCGLTPQYEQLENIQKAWA-DQGFVVL 61 (183)
T ss_pred CccCcEeECCCCCEEeHHH------------hCCCEEEEEEE---------eCCCCCcHHHHHHHHHHHHHh-hCCeEEE
Confidence 5889999999999987642 46999888665 899986642 222 2479999
Q ss_pred EEecc
Q 024610 168 EVSFI 172 (265)
Q Consensus 168 ~In~~ 172 (265)
.|+..
T Consensus 62 g~p~n 66 (183)
T PRK10606 62 GFPCN 66 (183)
T ss_pred Eeecc
Confidence 99874
No 55
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.025 Score=49.76 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=78.9
Q ss_pred cccCCCceeeCC-CCC---eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc--h--------hHHhhcc
Q 024610 95 AVKFPDLDVSYS-DRT---TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS--P--------FFEAFSD 160 (265)
Q Consensus 95 AlyFPnl~~~~l-~G~---tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~--p--------~~e~~~~ 160 (265)
...+|++.+... .|. ++++++. .||-+|+ ||.. .-|+= | ..+.|++
T Consensus 6 g~~aP~F~~~a~~~~~~~~~i~l~d~------------~gkw~VL--ff~P------~DFTfVCpTEi~af~~~y~eF~~ 65 (194)
T COG0450 6 GKKAPDFTANAVLGGEIFEEITLSDY------------YGKWVVL--FFYP------ADFTFVCPTEIIAFAKRYEEFQK 65 (194)
T ss_pred CCcCCCcEEEEEecCceeeEEechhh------------cCcEEEE--Eecc------CCCCccCcchHHHHHhhhHHHHH
Confidence 456899998776 664 6766532 3566666 4442 22211 1 1133444
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCccc----EEEEEeCCC
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTG----YIFLLDKFG 236 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vG----YVyLVD~~g 236 (265)
. ++++|-||++.-..- +.| ..-+++...-++ ....+. -+.+.++-+++||.++..| -+||||++|
T Consensus 66 ~-g~eVigvS~Ds~fsH-----~aW-~~~~~~~~gi~~---i~~Pmi-aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g 134 (194)
T COG0450 66 R-GVEVIGVSTDSVFSH-----KAW-KATIREAGGIGK---IKFPMI-ADPKGEIARAYGVLHPEEGLALRGTFIIDPDG 134 (194)
T ss_pred c-CCEEEEEecCcHHHH-----HHH-HhcHHhcCCccc---eecceE-EcCchhHHHHcCCcccCCCcceeEEEEECCCC
Confidence 4 799999999875431 122 111333222111 123331 2557899999999998877 899999999
Q ss_pred cEEEcccCCCC-HHHHHHHHHHH
Q 024610 237 RIRWQGFGMAT-PEELSSLLSCT 258 (265)
Q Consensus 237 rIRWagsG~at-~~E~e~L~k~~ 258 (265)
+||++-.-+.+ +..++.+.+.+
T Consensus 135 ~ir~~~v~~~~iGRn~dEilR~i 157 (194)
T COG0450 135 VIRHILVNPLTIGRNVDEILRVI 157 (194)
T ss_pred eEEEEEEecCCCCcCHHHHHHHH
Confidence 99999876655 43333333333
No 56
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.73 E-value=0.0065 Score=46.76 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=34.4
Q ss_pred HHHHHHhcccCCcccEEEEEeC-CCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDK-FGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~-~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+++.. +|.++++|+ +|++.+...|+.+.+++...
T Consensus 62 ~~~~~~~~i~~--~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~ 102 (104)
T cd02953 62 TALLKRFGVFG--PPTYLFYGPGGEPEPLRLPGFLTADEFLEA 102 (104)
T ss_pred HHHHHHcCCCC--CCEEEEECCCCCCCCcccccccCHHHHHHH
Confidence 45667788875 999999999 99999999999999987654
No 57
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.59 E-value=0.017 Score=45.89 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=63.6
Q ss_pred CC-ceEEEEEeeeccchHHHhhhcchhHHh---hcc--------CCCeeEEEEecccchhhccccchHHHHHHHHhcCCC
Q 024610 129 IP-KVSLVCLTFRASSQAMVDSWSSPFFEA---FSD--------SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA 196 (265)
Q Consensus 129 ~g-KvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~--------~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~ 196 (265)
.| |+.+|-++ ++||.+|... +.. ..++.++.|+++++.- +.. .+.
T Consensus 12 ~~~k~vlv~f~---------a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~-----~~~---------~~~ 68 (125)
T cd02951 12 DGKKPLLLLFS---------QPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKE-----VTD---------FDG 68 (125)
T ss_pred cCCCcEEEEEe---------CCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCce-----eec---------cCC
Confidence 36 88888665 9999998732 111 1357888898876431 111 010
Q ss_pred CCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCC-CcEEEcccCCCCHHHHHHHHHH
Q 024610 197 GENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKF-GRIRWQGFGMATPEELSSLLSC 257 (265)
Q Consensus 197 ~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~-grIRWagsG~at~~E~e~L~k~ 257 (265)
. .....++...+++.- +|.++++|++ |++.+.-.|+.+++++..+.+-
T Consensus 69 -------~----~~~~~~l~~~~~v~~--~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 69 -------E----ALSEKELARKYRVRF--TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred -------C----CccHHHHHHHcCCcc--ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 0 012356788888874 9999999999 8999999999998877666543
No 58
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.52 E-value=0.037 Score=48.93 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=79.8
Q ss_pred cccccccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------Hhh--cc
Q 024610 91 PALAAVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAF--SD 160 (265)
Q Consensus 91 ka~~AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~--~~ 160 (265)
....+.+.| ++.+.+-+|+.+... .++||++||.+.|+- +..-|-.-. ... ..
T Consensus 39 ~~~~~~~~~g~f~l~d~~G~~~~~~------------~l~Gk~~lv~FgyT~-----CpdVCP~~l~~l~~~~~~l~~~~ 101 (207)
T COG1999 39 LDAAAVYIGGDFELTDQDGKPFTLK------------DLKGKPSLVFFGYTH-----CPDVCPTTLAELKALLKKLGEGE 101 (207)
T ss_pred ccccccccCCceeeecCCCCEeecc------------ccCCCEEEEEeecCC-----CCccChHHHHHHHHHHHHhcccc
Confidence 355566777 688889999998643 357999999887652 222332111 111 34
Q ss_pred CCCeeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhccc-------------C
Q 024610 161 SKNVHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKIL-------------N 223 (265)
Q Consensus 161 ~~~vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~-------------N 223 (265)
..++|+|-|+++... .+.. ++.. ........ +. -+ -|+. +.+-+++++. .
T Consensus 102 ~~~v~vv~itvDPerDtp~~--lk~Y----~~~~~~~~----~~-~l--tg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~ 168 (207)
T COG1999 102 GDDVQVVFITVDPERDTPEV--LKKY----AELNFDPR----WI-GL--TGTPEQIEEVAKAYGVFYSKVPLDDSQNYTI 168 (207)
T ss_pred CCCEEEEEEEECCCCCCHHH--HHHH----hcccCCCC----ee-ee--eCCHHHHHHHHHHhcceeeecccCCCCCcee
Confidence 568999999998765 2222 3332 11111110 10 01 1221 2222333322 2
Q ss_pred CcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 224 LLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++..+||||++|+|+-.-.+..+++|+....+
T Consensus 169 ~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~ 201 (207)
T COG1999 169 DHSAGFYLIDADGRFLGTYDYGEPPEEIAADLK 201 (207)
T ss_pred eeeeEEEEECCCCeEEEEecCCCChHHHHHHHH
Confidence 368899999999999999888888777655443
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.25 E-value=0.036 Score=42.98 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=48.0
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
+|++.||-++ ++||.||.. .+ .+.+++.++.|+.+++-.
T Consensus 14 ~~k~vvv~F~---------a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~------------------------- 59 (103)
T cd02985 14 KGRLVVLEFA---------LKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS------------------------- 59 (103)
T ss_pred CCCEEEEEEE---------CCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH-------------------------
Confidence 3788888666 999999873 11 223567777777665310
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
..++-+.+++.. +|- |++..+|++.+...|..+ +|+.
T Consensus 60 ----------~~~l~~~~~V~~--~Pt-~~~~~~G~~v~~~~G~~~-~~l~ 96 (103)
T cd02985 60 ----------TMELCRREKIIE--VPH-FLFYKDGEKIHEEEGIGP-DELI 96 (103)
T ss_pred ----------HHHHHHHcCCCc--CCE-EEEEeCCeEEEEEeCCCH-HHHH
Confidence 012334456664 664 555579999999999554 4443
No 60
>PHA02278 thioredoxin-like protein
Probab=95.97 E-value=0.059 Score=42.44 Aligned_cols=81 Identities=17% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhH------HhhccC--CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFF------EAFSDS--KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV 200 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~~--~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~ 200 (265)
.+++.||-++ ++||.||. +.+... ..+.++.||++++..
T Consensus 13 ~~~~vvV~F~---------A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~------------------------ 59 (103)
T PHA02278 13 QKKDVIVMIT---------QDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV------------------------ 59 (103)
T ss_pred CCCcEEEEEE---------CCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc------------------------
Confidence 4677888666 99999997 223222 234566666554211
Q ss_pred ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+..++-+.++|.. +|-+.+.. +|++.+...|..+.+++..+.
T Consensus 60 ----------d~~~l~~~~~I~~--iPT~i~fk-~G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 60 ----------DREKAVKLFDIMS--TPVLIGYK-DGQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred ----------ccHHHHHHCCCcc--ccEEEEEE-CCEEEEEEeCCCCHHHHHhhh
Confidence 0134667777876 77665665 899999999999998887664
No 61
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.97 E-value=0.027 Score=43.47 Aligned_cols=97 Identities=21% Similarity=0.188 Sum_probs=60.0
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH---h------hccC--CCeeEEEEecccchhhccccchHHHHHHHHhcCCCC
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE---A------FSDS--KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAG 197 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~------~~~~--~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~ 197 (265)
.||..||-++ +.||..|.. . +... .++.++.+++.++.-... . +...-+..
T Consensus 4 ~~k~~v~~F~---------~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~ 65 (112)
T PF13098_consen 4 NGKPIVVVFT---------DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESE----A-----VLDFDGQK 65 (112)
T ss_dssp TSSEEEEEEE----------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHH----H-----HHSHTCHS
T ss_pred CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccc----c-----ccccccch
Confidence 3788888665 889998872 1 2121 368899999987543111 1 11111100
Q ss_pred CccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 198 ENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 198 ~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
. ....+.++-+.+|+.= +|.++++|.+|++...-.|+.+++|+..+
T Consensus 66 ------~---~~~~~~~l~~~~~v~g--tPt~~~~d~~G~~v~~~~G~~~~~~l~~~ 111 (112)
T PF13098_consen 66 ------N---VRLSNKELAQRYGVNG--TPTIVFLDKDGKIVYRIPGYLSPEELLKM 111 (112)
T ss_dssp ------S---CHHHHHHHHHHTT--S--SSEEEECTTTSCEEEEEESS--HHHHHHH
T ss_pred ------h---hhHHHHHHHHHcCCCc--cCEEEEEcCCCCEEEEecCCCCHHHHHhh
Confidence 0 0122357889999885 99999999999999999999999998764
No 62
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.52 E-value=0.15 Score=42.78 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=70.5
Q ss_pred ccCCCceeeCCC---CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH---HhhccCCCe-eEEE
Q 024610 96 VKFPDLDVSYSD---RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF---EAFSDSKNV-HLYE 168 (265)
Q Consensus 96 lyFPnl~~~~l~---G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~---e~~~~~~~v-qiv~ 168 (265)
...|+|.+.+.+ |+++++.+ .++||..||.++=.++---|...|...|. +.|.+. ++ +++-
T Consensus 3 ~~aPdF~l~~~~~~~g~~v~L~~-----------~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~ 70 (155)
T cd03013 3 DKLPNVTLFEYVPGPPNPVNLSE-----------LFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVIC 70 (155)
T ss_pred CcCCCeEeeeeccCCCceeeHHH-----------HhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEE
Confidence 468999988875 88876542 23577655544322232223333233333 234433 66 6999
Q ss_pred EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEEEEeCCCcEE
Q 024610 169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIFLLDKFGRIR 239 (265)
Q Consensus 169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVyLVD~~grIR 239 (265)
|+.+.-.. .+.| ++...-. ....+. -+....+-+++|+.... .-++|||| +|+||
T Consensus 71 iS~D~~~~-----~~~~-----~~~~~~~----~~f~lL-sD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~ 134 (155)
T cd03013 71 VSVNDPFV-----MKAW-----GKALGAK----DKIRFL-ADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVK 134 (155)
T ss_pred EECCCHHH-----HHHH-----HHhhCCC----CcEEEE-ECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEE
Confidence 99887443 1222 2211110 012232 34567888999986432 34689999 79999
Q ss_pred EcccCCCC
Q 024610 240 WQGFGMAT 247 (265)
Q Consensus 240 WagsG~at 247 (265)
|+.....+
T Consensus 135 ~~~~~~~~ 142 (155)
T cd03013 135 YLFVEEDP 142 (155)
T ss_pred EEEEecCC
Confidence 98877654
No 63
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.05 E-value=0.12 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
.++.+.++|.. ++-+++++ +| +++...|..+.+++.
T Consensus 62 ~~l~~~~~V~~--~PT~~lf~-~g-~~~~~~G~~~~~~l~ 97 (100)
T cd02999 62 PSLLSRYGVVG--FPTILLFN-ST-PRVRYNGTRTLDSLA 97 (100)
T ss_pred HHHHHhcCCee--cCEEEEEc-CC-ceeEecCCCCHHHHH
Confidence 45778888875 89999998 55 778888888777654
No 64
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.95 E-value=0.24 Score=40.00 Aligned_cols=90 Identities=12% Similarity=0.050 Sum_probs=57.9
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ 202 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~ 202 (265)
.|+..||-++ ++||.||.. .+.+..++.++.||++.+..... .
T Consensus 22 ~~~~~iv~f~---------~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~---~------------------- 70 (122)
T TIGR01295 22 KKETATFFIG---------RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEM---S------------------- 70 (122)
T ss_pred cCCcEEEEEE---------CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCc---c-------------------
Confidence 3666777555 899998873 34444567799999875432111 0
Q ss_pred ceeEEEcCChHHHHHHhccc--CCcccEEEEEeCCCcEEEcccC-CCCHHHHHHHH
Q 024610 203 RQIVYSFGDHYYFRKELKIL--NLLTGYIFLLDKFGRIRWQGFG-MATPEELSSLL 255 (265)
Q Consensus 203 ~~~~y~~g~~~~iRe~Lgi~--N~~vGYVyLVD~~grIRWagsG-~at~~E~e~L~ 255 (265)
.. .+..++++.+++. -..+|-+.++. +|+..|+.+| .++.+|++.+.
T Consensus 71 ~~-----~~~~~~~~~~~i~~~i~~~PT~v~~k-~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 71 SL-----NDLTAFRSRFGIPTSFMGTPTFVHIT-DGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred cH-----HHHHHHHHHcCCcccCCCCCEEEEEe-CCeEEEEEeCCCCCHHHHHHHh
Confidence 00 0124455665542 23488888777 9999999999 56799988765
No 65
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.78 E-value=0.44 Score=35.65 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=33.1
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
...+-+.+++.. +|.+++++ +|+++....|..+.++++.+.
T Consensus 55 ~~~l~~~~~i~~--~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 55 QPQIAQQFGVQA--LPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CHHHHHHcCCCC--CCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 355667778875 99999998 999999999998888887653
No 66
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=94.68 E-value=0.12 Score=44.17 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=78.5
Q ss_pred CCCceEEEE-EeeeccchHHHhhhcchhHHhhccCCCeeE-EEEecccchhhccccchHHHHHH-HHhcCCCCCccccce
Q 024610 128 AIPKVSLVC-LTFRASSQAMVDSWSSPFFEAFSDSKNVHL-YEVSFIDSWLLCRSPIKRILLKI-MRKSKDAGENVLQRQ 204 (265)
Q Consensus 128 l~gKvSIV~-l~~~~~gq~~~~sw~~p~~e~~~~~~~vqi-v~In~~e~~lk~~~~lk~~~~~~-lrk~~p~~~~~l~~~ 204 (265)
+.||+-||- |.-+.++.+|-++-++.+..+--.+..+|. --||.+|.-. =-++|+++ ..++..+ | -|.+
T Consensus 57 L~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~DDAi~-----GtgmFVkssae~~Kke--~-pwSq 128 (184)
T COG3054 57 LVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINTDDAIP-----GTGMFVKSSAESNKKE--Y-PWSQ 128 (184)
T ss_pred ccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEeccCCccc-----cccceeecchhhcccc--C-Ccee
Confidence 568887775 555556666655555444332111223443 3466666432 12334333 3333222 1 1445
Q ss_pred eEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 205 IVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 205 ~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
.+ +++..-.|.+-++.. ...-|.++|++||+-|..-|.-+..|++....-+..|++
T Consensus 129 ~v--lD~~gvak~AWqL~e-~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll~~l~k 184 (184)
T COG3054 129 FV--LDSNGVAKNAWQLKE-ESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLLQKLLK 184 (184)
T ss_pred eE--Eccchhhhhhhcccc-ccceEEEEcCCCcEEEEecCCccHHHHHHHHHHHHHhcC
Confidence 44 577777777888875 677789999999999999999999999998888877763
No 67
>PRK09381 trxA thioredoxin; Provisional
Probab=94.35 E-value=0.85 Score=35.00 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=31.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..+.+.+++.. +|.+++++ +|++++..+|..+++|++.+..
T Consensus 65 ~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~i~ 105 (109)
T PRK09381 65 PGTAPKYGIRG--IPTLLLFK-NGEVAATKVGALSKGQLKEFLD 105 (109)
T ss_pred hhHHHhCCCCc--CCEEEEEe-CCeEEEEecCCCCHHHHHHHHH
Confidence 34455667764 88888885 9999999999998888766544
No 68
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=94.19 E-value=0.2 Score=50.71 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcE--EEcccCCCCHHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRI--RWQGFGMATPEELSSLLSC 257 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grI--RWagsG~at~~E~e~L~k~ 257 (265)
.++.+.+++.. +|.++++|++|++ .....|+.+++|+....+-
T Consensus 524 ~~l~~~~~v~g--~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 524 VALLKHYNVLG--LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred HHHHHHcCCCC--CCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 45677888876 9999999999999 4788999999887665543
No 69
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.44 E-value=0.19 Score=40.99 Aligned_cols=27 Identities=7% Similarity=-0.135 Sum_probs=23.9
Q ss_pred cccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610 225 LTGYIFLLDKFGRIRWQGFGMATPEEL 251 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWagsG~at~~E~ 251 (265)
-+|.++++|++|++...+++.|.++|.
T Consensus 80 G~Pt~vfl~~~G~~~~~~~~~~~~~~~ 106 (124)
T cd02955 80 GWPLNVFLTPDLKPFFGGTYFPPEDRY 106 (124)
T ss_pred CCCEEEEECCCCCEEeeeeecCCCCcC
Confidence 599999999999999999999887554
No 70
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.27 E-value=0.99 Score=33.53 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=28.3
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
...+.+.++|.. +|.+++++.++. ...-.|.-+.+++...
T Consensus 58 ~~~~~~~~~i~~--~P~~~~~~~~~~-~~~~~g~~~~~~l~~~ 97 (102)
T TIGR01126 58 EKDLASRFGVSG--FPTIKFFPKGKK-PVDYEGGRDLEAIVEF 97 (102)
T ss_pred hHHHHHhCCCCc--CCEEEEecCCCc-ceeecCCCCHHHHHHH
Confidence 356778888864 999999997774 4555666677765443
No 71
>PRK10996 thioredoxin 2; Provisional
Probab=93.09 E-value=1.5 Score=35.88 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=32.2
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++.+.+++.. +|-+++.+ +|++...-.|.-+.++++...+
T Consensus 95 ~~~l~~~~~V~~--~Ptlii~~-~G~~v~~~~G~~~~e~l~~~l~ 136 (139)
T PRK10996 95 ERELSARFRIRS--IPTIMIFK-NGQVVDMLNGAVPKAPFDSWLN 136 (139)
T ss_pred CHHHHHhcCCCc--cCEEEEEE-CCEEEEEEcCCCCHHHHHHHHH
Confidence 355677788875 88777766 9999999999988887776543
No 72
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=92.85 E-value=0.83 Score=33.30 Aligned_cols=40 Identities=18% Similarity=-0.012 Sum_probs=33.0
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
+..+.+.+++.. +|-+++++++|+..+...|.-+.+++..
T Consensus 60 ~~~~~~~~~i~~--~Pt~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 60 NNDLCSEYGVRG--YPTIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred hHHHHHhCCCCC--CCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence 367788888875 9999999988899999999888887653
No 73
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=92.70 E-value=1.5 Score=36.81 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=25.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCc-EEEcccC--------CCCHHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGR-IRWQGFG--------MATPEELSSLLSC 257 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~gr-IRWagsG--------~at~~E~e~L~k~ 257 (265)
.++-+.++|.. ..+.+|+.- +|+ ..|.++| ..+.+|+..+...
T Consensus 67 ~dla~~y~I~~-~~t~~~ffk-~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 67 PDFNTMYELYD-PCTVMFFFR-NKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred HHHHHHcCccC-CCcEEEEEE-CCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 44555555652 234443444 677 9999999 5666666555443
No 74
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.55 E-value=1.4 Score=33.01 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=28.2
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
...+.+.+|+.- +|.+++. ++|++...-+|+-+.+++.
T Consensus 64 ~~~~~~~~~i~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~ 101 (104)
T cd02997 64 HDALKEEYNVKG--FPTFKYF-ENGKFVEKYEGERTAEDII 101 (104)
T ss_pred cHHHHHhCCCcc--ccEEEEE-eCCCeeEEeCCCCCHHHHH
Confidence 456778888864 8876555 4899888888888877654
No 75
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.20 E-value=2.1 Score=30.26 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.4
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
..++.+.+++.. +|.+++++ +|++.+...|..+++++..+
T Consensus 52 ~~~~~~~~~v~~--~P~~~~~~-~g~~~~~~~g~~~~~~l~~~ 91 (93)
T cd02947 52 NPELAEEYGVRS--IPTFLFFK-NGKEVDRVVGADPKEELEEF 91 (93)
T ss_pred ChhHHHhcCccc--ccEEEEEE-CCEEEEEEecCCCHHHHHHH
Confidence 355667778875 88888886 88999999999888777654
No 76
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=91.19 E-value=3 Score=31.43 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=31.5
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++-+.+++.. +|-+++++ +|++.....|..+.+++..+
T Consensus 57 ~~l~~~~~v~~--vPt~~i~~-~g~~v~~~~g~~~~~~~~~~ 95 (97)
T cd02949 57 QEIAEAAGIMG--TPTVQFFK-DKELVKEISGVKMKSEYREF 95 (97)
T ss_pred HHHHHHCCCee--ccEEEEEE-CCeEEEEEeCCccHHHHHHh
Confidence 45667777764 88899997 79999999999999886654
No 77
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=91.08 E-value=3.2 Score=31.76 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=25.9
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
..++-+++++.. +| +|++..+|++.....|. +++++.
T Consensus 60 ~~~~~~~~~v~~--~P-t~~~~~~g~~~~~~~G~-~~~~~~ 96 (102)
T cd02948 60 TIDTLKRYRGKC--EP-TFLFYKNGELVAVIRGA-NAPLLN 96 (102)
T ss_pred CHHHHHHcCCCc--Cc-EEEEEECCEEEEEEecC-ChHHHH
Confidence 345667788886 67 45566699999999995 554443
No 78
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=90.93 E-value=0.95 Score=36.72 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=25.4
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH-------hhccCC-CeeEEEEecccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSK-NVHLYEVSFIDS 174 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~-~vqiv~In~~e~ 174 (265)
|++.+|-++ ++-..-=.+||.||.. .....+ ++.++.|++.++
T Consensus 21 ~~~vvV~F~--A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~ 71 (119)
T cd02952 21 GKPIFILFY--GDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDR 71 (119)
T ss_pred CCeEEEEEE--ccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCc
Confidence 677777555 1000000299999872 233344 688999998763
No 79
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=90.92 E-value=3.3 Score=32.30 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=30.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
..+-+.+||.- +|=+++++ +|++.....|..+.+++..+
T Consensus 69 ~~l~~~~~V~~--~Pt~~i~~-~g~~~~~~~G~~~~~~l~~~ 107 (111)
T cd02963 69 RRLARKLGAHS--VPAIVGII-NGQVTFYHDSSFTKQHVVDF 107 (111)
T ss_pred HHHHHHcCCcc--CCEEEEEE-CCEEEEEecCCCCHHHHHHH
Confidence 45667778864 88788886 99999999999888876443
No 80
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.68 E-value=4.2 Score=29.80 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=33.5
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+....+.+.+|+.. +|.+++.+ +|++.+...|+.+++++....
T Consensus 55 ~~~~~~~~~~~v~~--~P~~~~~~-~g~~~~~~~g~~~~~~l~~~l 97 (101)
T TIGR01068 55 DENPDIAAKYGIRS--IPTLLLFK-NGKEVDRSVGALPKAALKQLI 97 (101)
T ss_pred CCCHHHHHHcCCCc--CCEEEEEe-CCcEeeeecCCCCHHHHHHHH
Confidence 33456778888886 89888885 899999999998887766554
No 81
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=90.06 E-value=3.3 Score=33.44 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=20.9
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT 247 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at 247 (265)
.++-+.++|.. +|.+.+.- +|++.+.-+|...
T Consensus 58 ~~la~~~~V~~--iPTf~~fk-~G~~v~~~~G~~~ 89 (114)
T cd02954 58 PDFNKMYELYD--PPTVMFFF-RNKHMKIDLGTGN 89 (114)
T ss_pred HHHHHHcCCCC--CCEEEEEE-CCEEEEEEcCCCC
Confidence 34555666665 67666666 7888887777544
No 82
>PTZ00051 thioredoxin; Provisional
Probab=89.26 E-value=2.5 Score=31.52 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=26.1
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
.++.+.+++.. +|.+.+. .+|++.=...|. .++++..
T Consensus 61 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~G~-~~~~~~~ 97 (98)
T PTZ00051 61 SEVAEKENITS--MPTFKVF-KNGSVVDTLLGA-NDEALKQ 97 (98)
T ss_pred HHHHHHCCCce--eeEEEEE-eCCeEEEEEeCC-CHHHhhc
Confidence 45667777865 8875544 699999888885 6666653
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=88.38 E-value=3.5 Score=30.70 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=27.6
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
++-+.+++.. +|.++++. +|++...-.|.-+.+++..
T Consensus 64 ~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 64 ELCSEFQVRG--YPTLLLFK-DGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred hhHhhcCCCc--CCEEEEEe-CCCeeeEeeCCCCHHHHHh
Confidence 4455667664 88888884 8999988999888777653
No 84
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=1.3 Score=38.31 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=24.7
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEE
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVC 136 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~ 136 (265)
+.+..|-++++++++|+.+++. ..+|||.||.
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~------------~yrGkV~LiV 40 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLS------------QYRGKVVLIV 40 (171)
T ss_pred hhhcceeeeEEecCCCCCccHH------------HhCCeEEEEE
Confidence 4456677999999999998764 3579988874
No 85
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=87.98 E-value=0.32 Score=37.91 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=34.4
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPE 249 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~ 249 (265)
.+...+|++|..-|.-.|+=||.| +|+|.|..-|.++=.
T Consensus 8 t~~~al~~~lryk~~va~hgflfd-dg~~vw~e~~d~~w~ 46 (111)
T PF02484_consen 8 TNMEALRDALRYKNEVARHGFLFD-DGDIVWSEDDDETWN 46 (111)
T ss_pred ccHHHHHHHHHHHhhccccceEec-CCcEEEecCChHHHH
Confidence 456889999999999999999999 999999998876643
No 86
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=87.91 E-value=1.8 Score=34.55 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=15.1
Q ss_pred HhcccCCcccEEEEEeCCCcEE
Q 024610 218 ELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grIR 239 (265)
.+++.-..+|.++++|++|++.
T Consensus 69 ~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 69 EFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred hcccCCCccceEEEECCCCCCc
Confidence 3333333488899999999884
No 87
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=87.84 E-value=7.4 Score=29.32 Aligned_cols=39 Identities=10% Similarity=-0.091 Sum_probs=28.8
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC-HHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT-PEELS 252 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at-~~E~e 252 (265)
..++-+.++|.. +|-+++.+..|+..+.-.|..+ .+++.
T Consensus 62 ~~~~~~~~~i~~--~Pt~~~~~~g~~~~~~~~G~~~~~~~l~ 101 (104)
T cd03004 62 YESLCQQANIRA--YPTIRLYPGNASKYHSYNGWHRDADSIL 101 (104)
T ss_pred hHHHHHHcCCCc--ccEEEEEcCCCCCceEccCCCCCHHHHH
Confidence 355667778875 8888888866588888888866 66654
No 88
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=87.60 E-value=5.7 Score=29.36 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
.++.+.+++.. +|.+++++ +|++.....|. .++++..
T Consensus 58 ~~~~~~~~i~~--~Pt~~~~~-~g~~~~~~~g~-~~~~l~~ 94 (97)
T cd02984 58 PEISEKFEITA--VPTFVFFR-NGTIVDRVSGA-DPKELAK 94 (97)
T ss_pred HHHHHhcCCcc--ccEEEEEE-CCEEEEEEeCC-CHHHHHH
Confidence 45677788876 88888886 89999998886 4455443
No 89
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=87.55 E-value=6.1 Score=30.06 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++-+.+++.. +|-+++++ +| +.|...|..+.+++..+.+
T Consensus 62 ~~~~~~~~I~~--~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~ 101 (104)
T cd03000 62 SSIASEFGVRG--YPTIKLLK-GD-LAYNYRGPRTKDDIVEFAN 101 (104)
T ss_pred HhHHhhcCCcc--ccEEEEEc-CC-CceeecCCCCHHHHHHHHH
Confidence 45667778875 88888886 44 4577888888888766554
No 90
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=87.01 E-value=8.8 Score=30.16 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHhcccCCcccEEEEEeC---CCcEEEcccCCCCHHHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDK---FGRIRWQGFGMATPEELSSLLSCT 258 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~---~grIRWagsG~at~~E~e~L~k~~ 258 (265)
.++.+.+++.. +|-+++.+. .|++| ..|.++++|+..+...+
T Consensus 65 ~~l~~~~~v~~--vPt~~i~~~g~~~~~~~--~~G~~~~~el~~~i~~i 109 (113)
T cd02975 65 KEKAEKYGVER--VPTTIFLQDGGKDGGIR--YYGLPAGYEFASLIEDI 109 (113)
T ss_pred HHHHHHcCCCc--CCEEEEEeCCeecceEE--EEecCchHHHHHHHHHH
Confidence 45667777775 788888874 35665 55788888988776654
No 91
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=86.50 E-value=6.6 Score=29.43 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
..+.+.+++.. +|-++++ .+|++ ..-.|..+.+++..+
T Consensus 61 ~~~~~~~~i~~--~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~ 98 (101)
T cd02994 61 PGLSGRFFVTA--LPTIYHA-KDGVF-RRYQGPRDKEDLISF 98 (101)
T ss_pred HhHHHHcCCcc--cCEEEEe-CCCCE-EEecCCCCHHHHHHH
Confidence 44566777765 7777776 68887 566788888776554
No 92
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=86.22 E-value=6.4 Score=29.75 Aligned_cols=38 Identities=3% Similarity=-0.143 Sum_probs=25.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCC----cEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFG----RIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~g----rIRWagsG~at~~E~e 252 (265)
.++-+.+++.. +|.++++++.+ ++...-.|.-+.+++.
T Consensus 64 ~~~~~~~~i~~--~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~ 105 (109)
T cd03002 64 KPLCGKYGVQG--FPTLKVFRPPKKASKHAVEDYNGERSAKAIV 105 (109)
T ss_pred HHHHHHcCCCc--CCEEEEEeCCCcccccccccccCccCHHHHH
Confidence 45667778875 89999999776 3555556666655554
No 93
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=85.54 E-value=4.9 Score=31.69 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHhcccCCcccEEEEEeCCCcEEEcccCC
Q 024610 215 FRKELKILNLLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 215 iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~ 245 (265)
+-+.+++.. +|-+.+.. +|+..+..+|.
T Consensus 67 l~~~~~v~~--vPt~l~fk-~G~~v~~~~g~ 94 (113)
T cd02989 67 LVEKLNIKV--LPTVILFK-NGKTVDRIVGF 94 (113)
T ss_pred HHHHCCCcc--CCEEEEEE-CCEEEEEEECc
Confidence 455666665 66565555 77777776554
No 94
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=1.4 Score=35.01 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=26.3
Q ss_pred CceEEEEEeeeccchHHHhhhcchhH------Hhh-ccCCCeeEEEEeccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFF------EAF-SDSKNVHLYEVSFID 173 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~-~~~~~vqiv~In~~e 173 (265)
+|..||=++ ++||.||. +.+ .++|++.++.|+++|
T Consensus 21 ~kliVvdF~---------a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde 62 (106)
T KOG0907|consen 21 DKLVVVDFY---------ATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE 62 (106)
T ss_pred CCeEEEEEE---------CCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc
Confidence 366666444 99999986 334 556889999999998
No 95
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=83.84 E-value=9.5 Score=28.24 Aligned_cols=38 Identities=13% Similarity=-0.097 Sum_probs=27.5
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
..+-+.+++. .+|-+++++..|+....-.|..+.+++.
T Consensus 65 ~~~~~~~~i~--~~P~~~~~~~~~~~~~~~~g~~~~~~l~ 102 (105)
T cd02998 65 KDLAKKYGVS--GFPTLKFFPKGSTEPVKYEGGRDLEDLV 102 (105)
T ss_pred hhhHHhCCCC--CcCEEEEEeCCCCCccccCCccCHHHHH
Confidence 4566777776 4888999987777777777777766654
No 96
>PF13728 TraF: F plasmid transfer operon protein
Probab=82.16 E-value=7.1 Score=34.69 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCceEEEEEeeeccchHHHhhhcc---hhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccce
Q 024610 128 AIPKVSLVCLTFRASSQAMVDSWSS---PFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQ 204 (265)
Q Consensus 128 l~gKvSIV~l~~~~~gq~~~~sw~~---p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~ 204 (265)
+.++..||-++.. + -.+|. |....|.+.-+++++.||++...+.. .|..
T Consensus 118 la~~~gL~~F~~~--~----C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~---------------fp~~------- 169 (215)
T PF13728_consen 118 LAQKYGLFFFYRS--D----CPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPS---------------FPNP------- 169 (215)
T ss_pred HhhCeEEEEEEcC--C----CchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcC---------------CCCC-------
Confidence 4567888855411 1 33554 45567888889999999998844321 2220
Q ss_pred eEEEcCChHHHHHHhcccCCcccEEEEEeCCC-cEEEcccCCCCHHHHH
Q 024610 205 IVYSFGDHYYFRKELKILNLLTGYIFLLDKFG-RIRWQGFGMATPEELS 252 (265)
Q Consensus 205 ~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~g-rIRWagsG~at~~E~e 252 (265)
-.+.++.+.||+. .|+-+|||+.++ ++.=.+.|..+.+|+.
T Consensus 170 -----~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~ 211 (215)
T PF13728_consen 170 -----RPDPGQAKRLGVK--VTPALFLVNPNTKKWYPVSQGFMSLDELE 211 (215)
T ss_pred -----CCCHHHHHHcCCC--cCCEEEEEECCCCeEEEEeeecCCHHHHH
Confidence 1135577889996 699999999988 7777889999988875
No 97
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=0.84 Score=41.64 Aligned_cols=29 Identities=69% Similarity=1.121 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHccchhHHHHHhhhcCCe
Q 024610 53 VEKERARLADEMNRGYFADVAELKKHGGK 81 (265)
Q Consensus 53 ~~~rrk~L~~e~~~~yf~D~~~~r~~~GK 81 (265)
.+-.|+.+..|+.+|||++++|+..++||
T Consensus 60 ~~~~r~~~~~e~t~~~~~r~KEl~~e~~k 88 (287)
T KOG4614|consen 60 IEDERARLNDEMTRGYFARMKELKEEGGK 88 (287)
T ss_pred cchHHHHhChhhccCHHHHHHHHHHhccc
Confidence 35667888888888888888888888888
No 98
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=80.98 E-value=13 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=16.7
Q ss_pred HHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
+.+++.. +|.+++++..+++...-.|
T Consensus 72 ~~~~v~~--~Pti~~f~~~~~~~~~y~g 97 (109)
T cd02993 72 EELQLKS--FPTILFFPKNSRQPIKYPS 97 (109)
T ss_pred hhcCCCc--CCEEEEEcCCCCCceeccC
Confidence 3456654 8888888877765544444
No 99
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=79.73 E-value=23 Score=26.50 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=24.6
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
.+-+.+++.. +|-+++. ++|+....-.|.-+.+++..
T Consensus 63 ~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 63 MLCRSQGVNS--YPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred HHHHHcCCCc--cCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 3445566653 6767666 47887777778777776543
No 100
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=79.43 E-value=13 Score=30.15 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=28.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+||.. +|.+.|.. +|++.. -.|..+.+++...
T Consensus 77 ~~La~~~~I~~--iPTl~lfk-~G~~v~-~~G~~~~~~l~~~ 114 (120)
T cd03065 77 AKVAKKLGLDE--EDSIYVFK-DDEVIE-YDGEFAADTLVEF 114 (120)
T ss_pred HHHHHHcCCcc--ccEEEEEE-CCEEEE-eeCCCCHHHHHHH
Confidence 45667778876 88888887 899887 7788777665543
No 101
>PTZ00102 disulphide isomerase; Provisional
Probab=79.31 E-value=10 Score=36.56 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=23.5
Q ss_pred cccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 225 LTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.+|-+++++..+++...-.|.-+.+++....+
T Consensus 431 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~ 462 (477)
T PTZ00102 431 AFPTILFVKAGERTPIPYEGERTVEGFKEFVN 462 (477)
T ss_pred ccCeEEEEECCCcceeEecCcCCHHHHHHHHH
Confidence 37889999988887666677778877655443
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=77.75 E-value=25 Score=25.73 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=31.6
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
...+-+.++|.. +|-++++. +|+..-.-.|..+.+++....
T Consensus 60 ~~~l~~~~~v~~--~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 100 (103)
T PF00085_consen 60 NKELCKKYGVKS--VPTIIFFK-NGKEVKRYNGPRNAESLIEFI 100 (103)
T ss_dssp SHHHHHHTTCSS--SSEEEEEE-TTEEEEEEESSSSHHHHHHHH
T ss_pred cchhhhccCCCC--CCEEEEEE-CCcEEEEEECCCCHHHHHHHH
Confidence 355677888876 88888887 777777888888888887654
No 103
>smart00594 UAS UAS domain.
Probab=74.48 E-value=19 Score=28.55 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=33.5
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCC-----cEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFG-----RIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~g-----rIRWagsG~at~~E~e~L 254 (265)
...+.+.+++.- .|.+.+||++| .+-+.-.|+.+++|+...
T Consensus 75 g~~l~~~~~~~~--~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 75 GQRVSQFYKLDS--FPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred HHHHHHhcCcCC--CCEEEEEecCCCceeEEEeccccCCCCHHHHHHh
Confidence 466888888874 99999999998 456688999999998654
No 104
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=74.02 E-value=2.9 Score=30.47 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=17.6
Q ss_pred HhcccCCcccEEEEEeCCCcEEEccc
Q 024610 218 ELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
.+.+. ..||+||||++|+|-+...
T Consensus 47 ~~~~~--~~g~~~ivd~~G~ii~hp~ 70 (81)
T PF02743_consen 47 NIKFG--NNGYAFIVDKNGTIIAHPD 70 (81)
T ss_dssp TSBBT--TTBEEEEEETTSBBCE-SS
T ss_pred eeEEC--CCEEEEEEECCCCEEEeCC
Confidence 34444 4899999999999977543
No 105
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=73.22 E-value=12 Score=29.09 Aligned_cols=43 Identities=28% Similarity=0.204 Sum_probs=35.3
Q ss_pred hHHHHHHhcccCCcccEEEEEeC-CCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDK-FGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~-~grIRWagsG~at~~E~e~L~k 256 (265)
...+-+.+++. .+|.++++|+ +|++.+.-.|+.+++|+-...+
T Consensus 65 ~~~~~~~~~~~--~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~ 108 (114)
T cd02958 65 GQRFLQSYKVD--KYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLI 108 (114)
T ss_pred HHHHHHHhCcc--CCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHH
Confidence 35677778876 4999999999 8999999999999998765443
No 106
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.12 E-value=39 Score=28.90 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=70.2
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhccCCCeeEEEEeccc
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFSDSKNVHLYEVSFID 173 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~~~~~vqiv~In~~e 173 (265)
.+...|++.+.+.+...+.+.+ ..||..|++++=+-.. .-+++=+..|.+.-....++.++-||++=
T Consensus 20 vGd~ap~ftl~~~dL~~v~l~~------------~~gk~~vi~v~PSiDT-~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DL 86 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVSLAD------------FAGKKKVISVFPSIDT-PVCATQVRKFNEEAAKLGNTVVLCISMDL 86 (158)
T ss_pred cCCcCCceEEEcCcccceeccc------------cCCceEEEEEccCCCC-chhhHHHHHHHHHHhccCCcEEEEEeCCC
Confidence 4556788888776666665442 3589999988743211 12334445677777778889999999865
Q ss_pred chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC--hHHHHHHhcccCCcc-------cEEEEEeCCCcEEEcc
Q 024610 174 SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD--HYYFRKELKILNLLT-------GYIFLLDKFGRIRWQG 242 (265)
Q Consensus 174 ~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~--~~~iRe~Lgi~N~~v-------GYVyLVD~~grIRWag 242 (265)
-.- .++| ...-+ ..+++ .+.| .-.|-|..|+.=... ==||++|++|+|.|..
T Consensus 87 PFA-----q~Rf-----C~aeG------i~nv~-~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 87 PFA-----QKRF-----CGAEG------IENVI-TLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhH-----Hhhh-----hhhcC------cccce-EhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 332 2222 22111 11222 1233 133666666653222 2699999999999863
No 107
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=4.8 Score=34.20 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=47.2
Q ss_pred CceEEEEEeeeccchHHHhhhcchhH------Hhhcc--CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFF------EAFSD--SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~--~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
+.+.||-++ ++||.||. +...+ ...++++-||++++--
T Consensus 61 ~~PVlVdF~---------A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e------------------------- 106 (150)
T KOG0910|consen 61 DVPVLVDFH---------AEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE------------------------- 106 (150)
T ss_pred CCCEEEEEe---------cCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-------------------------
Confidence 567888666 99999986 23322 3458888888877421
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+-+..+|. .++=|.+++ +|.-.=.--|..+.+-++.+.
T Consensus 107 -------------la~~Y~I~--avPtvlvfk-nGe~~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 107 -------------LAEDYEIS--AVPTVLVFK-NGEKVDRFVGAVPKEQLRSLI 144 (150)
T ss_pred -------------hHhhccee--eeeEEEEEE-CCEEeeeecccCCHHHHHHHH
Confidence 22223333 366667776 777776666666666555443
No 108
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=70.63 E-value=7.6 Score=28.78 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=13.1
Q ss_pred CceEEEEEeeeccchHHHhhhcchhH
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFF 155 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~ 155 (265)
+++.+|-++ ++||.+|.
T Consensus 18 ~~~~~v~f~---------~~~C~~C~ 34 (104)
T cd02995 18 DKDVLVEFY---------APWCGHCK 34 (104)
T ss_pred CCcEEEEEE---------CCCCHHHH
Confidence 467777666 89999887
No 109
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.92 E-value=40 Score=29.38 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=29.0
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEE-EcccCCCCHHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIR-WQGFGMATPEELSSLLSC 257 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIR-WagsG~at~~E~e~L~k~ 257 (265)
..++-+.++|.. +|=+.+.+ +|+.. ....|..+.+|+..+...
T Consensus 66 ~~~l~~~~~V~~--~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~ 109 (215)
T TIGR02187 66 DKEEAEKYGVER--VPTTIILE-EGKDGGIRYTGIPAGYEFAALIED 109 (215)
T ss_pred cHHHHHHcCCCc--cCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHH
Confidence 355667777775 77555556 67775 477888888887655543
No 110
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=68.42 E-value=60 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
..+-..++|.. +|-+.+.. +|++.+.-.|..+-+|+.
T Consensus 73 ~~la~~f~V~s--IPTli~fk-dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 73 QALAARFGVLR--TPALLFFR-DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHHHHcCCCc--CCEEEEEE-CCEEEEEEeCccCHHHHh
Confidence 45666667776 77666666 899999999999988875
No 111
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=67.97 E-value=51 Score=24.98 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=27.9
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCc-EEEcccCCCCHHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGR-IRWQGFGMATPEELS 252 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~gr-IRWagsG~at~~E~e 252 (265)
+...++-+.+||.. +|-+++. .+|+ +.....|.-+.+++.
T Consensus 65 d~~~~l~~~~~v~~--~Ptl~~~-~~g~~~~~~~~g~~~~~~l~ 105 (108)
T cd02996 65 DKESDIADRYRINK--YPTLKLF-RNGMMMKREYRGQRSVEALA 105 (108)
T ss_pred CCCHHHHHhCCCCc--CCEEEEE-eCCcCcceecCCCCCHHHHH
Confidence 33467888889986 7877777 4788 446667777666653
No 112
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=67.97 E-value=8.4 Score=31.21 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhH------Hhh-ccCCC-eeEEEEecccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFF------EAF-SDSKN-VHLYEVSFIDS 174 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~-~~~~~-vqiv~In~~e~ 174 (265)
.+|+.||.++ ++||.||. +.+ .+.++ +-++.|+++|.
T Consensus 13 ~~klVVVdF~---------a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev 57 (114)
T cd02986 13 AEKVLVLRFG---------RDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV 57 (114)
T ss_pred CCCEEEEEEe---------CCCChhHHHHHHHHHHHHHHccCceEEEEEecccc
Confidence 3688888776 99999987 223 23356 88999999984
No 113
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=67.04 E-value=67 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++-+.++|.. +|.+++++ +|++.....|..+.+++...
T Consensus 96 ~~l~~~~~I~~--~PTl~~f~-~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 96 LNLAKRFAIKG--YPTLLLFD-KGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred HHHHHHcCCCc--CCEEEEEE-CCEEEEeeCCCCCHHHHHHH
Confidence 45667788875 88899999 78988888888888877554
No 114
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.52 E-value=6.5 Score=23.47 Aligned_cols=16 Identities=38% Similarity=0.843 Sum_probs=14.3
Q ss_pred ccEEEEEeC-CCcEEEc
Q 024610 226 TGYIFLLDK-FGRIRWQ 241 (265)
Q Consensus 226 vGYVyLVD~-~grIRWa 241 (265)
-|++|-+|. +|+++|.
T Consensus 15 ~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 15 DGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEEcccCcEEEE
Confidence 389999998 9999996
No 115
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=65.51 E-value=26 Score=32.24 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=65.7
Q ss_pred CCCceEEEEEeeeccchHHHhhhcc---hhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccce
Q 024610 128 AIPKVSLVCLTFRASSQAMVDSWSS---PFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQ 204 (265)
Q Consensus 128 l~gKvSIV~l~~~~~gq~~~~sw~~---p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~ 204 (265)
+..+-.||-++. |. ..+|. |.+..|.+.-+++++.||++...+..+ |.
T Consensus 148 la~~~gL~fFy~---~~---C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~f---------------p~-------- 198 (256)
T TIGR02739 148 LSQSYGLFFFYR---GK---SPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGL---------------PN-------- 198 (256)
T ss_pred HHhceeEEEEEC---CC---CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCC---------------CC--------
Confidence 445667774432 22 34666 555778888899999999988544222 21
Q ss_pred eEEEcCChHHHHHHhcccCCcccEEEEEeCC-CcEEEcccCCCCHHHH-HHHHHHHH
Q 024610 205 IVYSFGDHYYFRKELKILNLLTGYIFLLDKF-GRIRWQGFGMATPEEL-SSLLSCTS 259 (265)
Q Consensus 205 ~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~-grIRWagsG~at~~E~-e~L~k~~~ 259 (265)
. ..| ....+.||+.. ++=+|||+.+ +++.=.+.|..+.+|+ +.+...+.
T Consensus 199 ~---~~d-~gqa~~l~v~~--~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 199 S---RSD-SGQAQHLGVKY--FPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred c---cCC-hHHHHhcCCcc--CceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 0 112 44678899975 9999999999 6666689999999998 44544443
No 116
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=62.41 E-value=12 Score=29.15 Aligned_cols=35 Identities=3% Similarity=-0.067 Sum_probs=20.5
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEeccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFID 173 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e 173 (265)
+++.||-++ +.||.||.. .+ ...+++.++.|+.++
T Consensus 24 ~~~vvv~F~---------a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~ 65 (113)
T cd02957 24 GTRVVVHFY---------EPGFPRCKILDSHLEELAAKYPETKFVKINAEK 65 (113)
T ss_pred CCEEEEEEe---------CCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh
Confidence 366677555 899998862 11 223455556665544
No 117
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=59.53 E-value=14 Score=31.78 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=27.4
Q ss_pred EEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 229 IFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 229 VyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
=||||.+|+|.=+=+-..+|++++. .++.||++
T Consensus 130 KFLvdr~G~VV~Rf~p~t~P~d~~~---~Ie~lL~~ 162 (162)
T COG0386 130 KFLVDRDGNVVKRFSPKTKPEDIEL---AIEKLLAE 162 (162)
T ss_pred EEEEcCCCcEEEeeCCCCChhhHHH---HHHHHhcC
Confidence 4899999999888888899998887 66777654
No 118
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=58.90 E-value=28 Score=25.19 Aligned_cols=43 Identities=19% Similarity=0.431 Sum_probs=29.3
Q ss_pred EEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 206 VYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 206 ~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
++-..+..++ +.+|+.. +|=+ +|| |+++|.|. -++.+|+..+.
T Consensus 33 i~~~~~~~~~-~~ygv~~--vPal-vIn--g~~~~~G~-~p~~~el~~~l 75 (76)
T PF13192_consen 33 IIDIEDFEEI-EKYGVMS--VPAL-VIN--GKVVFVGR-VPSKEELKELL 75 (76)
T ss_dssp EEETTTHHHH-HHTT-SS--SSEE-EET--TEEEEESS---HHHHHHHHH
T ss_pred EEEccCHHHH-HHcCCCC--CCEE-EEC--CEEEEEec-CCCHHHHHHHh
Confidence 3334566777 8899986 8888 454 89999876 67778887764
No 119
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=57.79 E-value=18 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hhcc--CCCeeEEEEecccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSD--SKNVHLYEVSFIDS 174 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~--~~~vqiv~In~~e~ 174 (265)
.+++.+|.++ ++||.||.. ...+ ...+.++.||.+++
T Consensus 28 ~~~~vlV~Fy---------A~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~ 72 (113)
T cd03006 28 DAEVSLVMYY---------APWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP 72 (113)
T ss_pred CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC
Confidence 4678888666 999999862 1211 12366777776653
No 120
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=57.22 E-value=20 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=24.2
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH------hhcc---CCCeeEEEEecccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AFSD---SKNVHLYEVSFIDS 174 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~---~~~vqiv~In~~e~ 174 (265)
+++.||-++ ++||.||.. .+.. .++++++.||++++
T Consensus 47 ~~~vvV~Fy---------a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~ 91 (152)
T cd02962 47 RVTWLVEFF---------TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF 91 (152)
T ss_pred CCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC
Confidence 456777665 899999872 2221 23588999998774
No 121
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=54.62 E-value=15 Score=29.92 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHHHHhc---ccCCcccEEEEEeCCCcEEE
Q 024610 213 YYFRKELK---ILNLLTGYIFLLDKFGRIRW 240 (265)
Q Consensus 213 ~~iRe~Lg---i~N~~vGYVyLVD~~grIRW 240 (265)
..+++-++ +.+..+-+++++|.+|++.|
T Consensus 34 ~~~~~N~~~~~~~~~~~d~~~~~d~~g~~~~ 64 (161)
T PF05228_consen 34 DWIDENLGPELFENFGLDLIFILDPDGRVLY 64 (161)
T ss_pred HHHHHhcChhhhhhcCccEEEEEcCCCCEEE
Confidence 33444444 35556779999999999999
No 122
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=53.07 E-value=1.5e+02 Score=25.44 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=55.6
Q ss_pred cCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh-ccCCCeeEEEEecccchhhccccchHHHHHHH
Q 024610 122 ANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIM 190 (265)
Q Consensus 122 ~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~l 190 (265)
.+.+..++||+..+ +|+ +.||.||.+ .. ...+.+.+|=||-+.+-- -+.--|
T Consensus 25 ~~~~~~l~gKvV~l--yFs-------A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~--------~~~~y~ 87 (157)
T KOG2501|consen 25 VLASEALQGKVVGL--YFS-------AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEE--------SLDEYM 87 (157)
T ss_pred chHhHhhCCcEEEE--EEE-------EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHH--------HHHHHH
Confidence 34455678976555 665 899998863 22 233568999999886432 122224
Q ss_pred Hh-cCCCCCccccceeEEEcCC--hHHHHHHhcccCCcccEEEEEeCCCcEE
Q 024610 191 RK-SKDAGENVLQRQIVYSFGD--HYYFRKELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 191 rk-~~p~~~~~l~~~~~y~~g~--~~~iRe~Lgi~N~~vGYVyLVD~~grIR 239 (265)
.. ..+| -++ .++| .+++.+..++.- ++=.-+|.++|...
T Consensus 88 ~~~~~~W------~~i--Pf~d~~~~~l~~ky~v~~--iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 88 LEHHGDW------LAI--PFGDDLIQKLSEKYEVKG--IPALVILKPDGTVV 129 (157)
T ss_pred HhcCCCe------EEe--cCCCHHHHHHHHhcccCc--CceeEEecCCCCEe
Confidence 43 2333 121 3455 366777777764 78888888888554
No 123
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=52.94 E-value=89 Score=22.89 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=22.1
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEEL 251 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~ 251 (265)
..++.+.+++.. +|.+++.++..+.-..-.|..+.+++
T Consensus 61 ~~~~~~~~~i~~--~P~~~~~~~~~~~~~~~~g~~~~~~l 98 (103)
T cd03001 61 HQSLAQQYGVRG--FPTIKVFGAGKNSPQDYQGGRTAKAI 98 (103)
T ss_pred hHHHHHHCCCCc--cCEEEEECCCCcceeecCCCCCHHHH
Confidence 456777888875 88888888441222233344444433
No 124
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=49.76 E-value=48 Score=27.31 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=18.5
Q ss_pred cccEEEEEeCCCcEEEcccCCC
Q 024610 225 LTGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWagsG~a 246 (265)
.+|=++++|++|+++=.-.|+-
T Consensus 79 ~vPtivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 79 YVPRIMFVDPSLTVRADITGRY 100 (130)
T ss_pred ccCeEEEECCCCCCcccccccc
Confidence 5788999999999988877753
No 125
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=46.11 E-value=14 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.2
Q ss_pred ccEEEEEeCCCcEEEcccC
Q 024610 226 TGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 226 vGYVyLVD~~grIRWagsG 244 (265)
.|=+||||+.|+|+|++-.
T Consensus 95 ~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 95 LGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred cCeEEEEcCCCeEEEEEec
Confidence 5678999999999999753
No 126
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=44.87 E-value=28 Score=24.61 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=27.0
Q ss_pred cccEEEEEeCCCcE-EEcccCCCCHHHHHHHHHHHHhhh
Q 024610 225 LTGYIFLLDKFGRI-RWQGFGMATPEELSSLLSCTSLLL 262 (265)
Q Consensus 225 ~vGYVyLVD~~grI-RWagsG~at~~E~e~L~k~~~~Ll 262 (265)
..+.+||+|.-..| .|.|.+ ++..|...-...+..|.
T Consensus 16 ~s~~~yIld~~~~i~vW~G~~-~~~~e~~~a~~~a~~~~ 53 (76)
T PF00626_consen 16 NSDDCYILDCGYEIFVWVGKK-SSPEEKAFAAQLAQELL 53 (76)
T ss_dssp ETTSEEEEEESSEEEEEEHTT-SHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCcEEEEecc-CCHHHHHHHHHHHHHhh
Confidence 37889999965554 799998 77777766666666655
No 127
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=44.39 E-value=5.9 Score=26.33 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=12.0
Q ss_pred EEeCCCcEEEcccCC
Q 024610 231 LLDKFGRIRWQGFGM 245 (265)
Q Consensus 231 LVD~~grIRWagsG~ 245 (265)
|.|++|.|+|++.=.
T Consensus 15 ltd~~G~~vW~a~y~ 29 (41)
T PF03527_consen 15 LTDEDGNIVWRAEYD 29 (41)
T ss_pred HHHhcCceEEEEeec
Confidence 468999999998643
No 128
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=44.13 E-value=33 Score=29.29 Aligned_cols=26 Identities=4% Similarity=0.024 Sum_probs=18.5
Q ss_pred hhhcchhHH------hh-ccCCCeeEEEEeccc
Q 024610 148 DSWSSPFFE------AF-SDSKNVHLYEVSFID 173 (265)
Q Consensus 148 ~sw~~p~~e------~~-~~~~~vqiv~In~~e 173 (265)
+.||.||.. .+ ..+|.+.++.|+.++
T Consensus 92 a~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~ 124 (175)
T cd02987 92 EPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA 124 (175)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 899999862 22 345678888888765
No 129
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=1.9e+02 Score=25.46 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=64.9
Q ss_pred cccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc--hhHHhhccCCCeeEEE
Q 024610 91 PALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS--PFFEAFSDSKNVHLYE 168 (265)
Q Consensus 91 ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~--p~~e~~~~~~~vqiv~ 168 (265)
+-.++.-.|+|++.|-||+++++..-. ..|+.|+-++=.++---|+..=|. +-.+.|+. .++.++-
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit-----------~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk-a~aeV~G 129 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKIT-----------GNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK-AGAEVIG 129 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeec-----------CCCcEEEEEeccCCCCCcccccccccccHHHHhh-cCceEEe
Confidence 456777899999999999999976421 124333322222232333443333 11122222 2688999
Q ss_pred EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC-Cccc----EEEEEeCC
Q 024610 169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN-LLTG----YIFLLDKF 235 (265)
Q Consensus 169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N-~~vG----YVyLVD~~ 235 (265)
++.+++..... +.+ +...| +.+. .+...+++..||..- +..| -.|+.|..
T Consensus 130 lS~D~s~sqKa--F~s------KqnlP--------YhLL-SDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg 184 (211)
T KOG0855|consen 130 LSGDDSASQKA--FAS------KQNLP--------YHLL-SDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKG 184 (211)
T ss_pred eccCchHHHHH--hhh------hccCC--------eeee-cCcchhHHHHhCCCCCCCCCcccceEEEEecC
Confidence 99999754222 211 11122 2231 466789999999887 4455 34555643
No 130
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=42.47 E-value=31 Score=21.70 Aligned_cols=20 Identities=35% Similarity=0.755 Sum_probs=16.6
Q ss_pred CcccEEEEEe-CCCcEEEccc
Q 024610 224 LLTGYIFLLD-KFGRIRWQGF 243 (265)
Q Consensus 224 ~~vGYVyLVD-~~grIRWags 243 (265)
..-||+|=+| ..|++.|...
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEeee
Confidence 4579999999 6899999754
No 131
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=41.37 E-value=19 Score=35.59 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=20.6
Q ss_pred HHHHHHhcccCC----cccEEEEEeCCCcEEEcccC
Q 024610 213 YYFRKELKILNL----LTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 213 ~~iRe~Lgi~N~----~vGYVyLVD~~grIRWagsG 244 (265)
..+...|-+.|. ..+|+|++|.+|.|||--..
T Consensus 110 ~~~~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~ 145 (477)
T PF05935_consen 110 EEMEDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPL 145 (477)
T ss_dssp TT-TT-EEEEEETT--BEEEEEEEETTS-EEEEE-G
T ss_pred cccCCcEEEEeCCCCCCCceEEEECCCccEEEEEcc
Confidence 334444444443 78999999999999997544
No 132
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=40.08 E-value=32 Score=27.44 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=32.8
Q ss_pred CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEE-EeeeccchHHHhhhcc--hhHHhhccCCCeeEEEEecc
Q 024610 100 DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVC-LTFRASSQAMVDSWSS--PFFEAFSDSKNVHLYEVSFI 172 (265)
Q Consensus 100 nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~-l~~~~~gq~~~~sw~~--p~~e~~~~~~~vqiv~In~~ 172 (265)
++++++++|+++++.. .+|||.||. +++. -|. +..|.. .+.+.+.+. ++.|+...-.
T Consensus 3 df~~~~~~G~~v~l~~------------y~Gkv~LIVNvAs~-Cg~--t~qy~~L~~L~~ky~~~-gl~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSK------------YKGKVLLIVNVASK-CGY--TKQYKQLNELYEKYKDK-GLEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGG------------GTTSEEEEEEEESS-STT--HHHHHHHHHHHHHHGGG-TEEEEEEEBS
T ss_pred ceeeeCCCCCEECHHH------------cCCCEEEEEecccc-cCC--ccccHHHHHHHHHHhcC-CeEEEeeehH
Confidence 5788999999998753 478998874 3322 221 112211 233445433 5777777653
No 133
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=39.11 E-value=26 Score=25.41 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=14.8
Q ss_pred ccEEEEEeCCCcEEEcccC
Q 024610 226 TGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 226 vGYVyLVD~~grIRWagsG 244 (265)
.-.|+++|.+|+|.|+-..
T Consensus 5 p~~i~v~D~~~~i~~~N~~ 23 (110)
T PF08448_consen 5 PDGIFVIDPDGRIVYANQA 23 (110)
T ss_dssp SSEEEEEETTSBEEEE-HH
T ss_pred CceeEEECCCCEEEEEHHH
Confidence 3468899999999997654
No 134
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=37.19 E-value=77 Score=23.34 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=22.2
Q ss_pred cccEEEEEeCCCc-EEEcccCCCCHHHHHHHHHHHHhhh
Q 024610 225 LTGYIFLLDKFGR-IRWQGFGMATPEELSSLLSCTSLLL 262 (265)
Q Consensus 225 ~vGYVyLVD~~gr-IRWagsG~at~~E~e~L~k~~~~Ll 262 (265)
..+-+||||-... ..|.|++ +++.|.+.-...+..++
T Consensus 24 ~s~d~fild~~~~iyvW~G~~-as~~ek~~A~~~a~~~~ 61 (90)
T smart00262 24 NSGDCYILDTGSEIYVWVGKK-SSQDEKKKAAELAVELD 61 (90)
T ss_pred CCCCEEEEECCCEEEEEECCC-CCHHHHHHHHHHHHHHH
Confidence 3677888885433 3677776 45555555444555554
No 135
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.16 E-value=1.2e+02 Score=26.23 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=59.0
Q ss_pred CccccCCC-ceEEEEE--eeecc-chHHHhhhcchhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCC
Q 024610 123 NADKAAIP-KVSLVCL--TFRAS-SQAMVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGE 198 (265)
Q Consensus 123 ~t~~~l~g-KvSIV~l--~~~~~-gq~~~~sw~~p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~ 198 (265)
++.++.+| |+.|..+ .|+.. ++.++..|++... .+....-=++|-|++.|-.. +..-+|+.++.
T Consensus 36 ~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~-elksKGVd~iicvSVnDpFv----------~~aW~k~~g~~- 103 (171)
T KOG0541|consen 36 NVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKAD-ELKSKGVDEIICVSVNDPFV----------MKAWAKSLGAN- 103 (171)
T ss_pred EhHHhcCCceEEEEcCCCccCCccccccCchHHHHHH-HHHhcCCcEEEEEecCcHHH----------HHHHHhhcCcc-
Confidence 34456678 5666655 44443 5555555554433 34554445678888877543 22336666663
Q ss_pred ccccceeEEEcCChHHHHHHhccc---------CCcccEEEEEeCCCcEEEcccCCC
Q 024610 199 NVLQRQIVYSFGDHYYFRKELKIL---------NLLTGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 199 ~~l~~~~~y~~g~~~~iRe~Lgi~---------N~~vGYVyLVD~~grIRWagsG~a 246 (265)
.++-..-+...++-++||+. -..-.|-.+|| ||++-...-...
T Consensus 104 ----~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vve-ngkV~~~nvE~~ 155 (171)
T KOG0541|consen 104 ----DHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVE-NGKVTVVNVEEG 155 (171)
T ss_pred ----ceEEEEecCCCceeeeccceeeeccccCccccccEEEEEe-CCeEEEEEeccC
Confidence 23332223344444444332 22356889999 999988765543
No 136
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=35.59 E-value=3.2e+02 Score=25.79 Aligned_cols=37 Identities=5% Similarity=-0.049 Sum_probs=22.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcE-EEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRI-RWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grI-RWagsG~at~~E~e 252 (265)
.++-+.+|+.. +|.+++.. +|+. .+.-.|..+.+++.
T Consensus 65 ~~l~~~~~i~~--~Pt~~~~~-~g~~~~~~~~g~~~~~~l~ 102 (462)
T TIGR01130 65 KDLAQKYGVSG--YPTLKIFR-NGEDSVSDYNGPRDADGIV 102 (462)
T ss_pred HHHHHhCCCcc--ccEEEEEe-CCccceeEecCCCCHHHHH
Confidence 44566677764 67666665 6665 45556666665543
No 137
>COG4316 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.19 E-value=29 Score=28.50 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=11.4
Q ss_pred CCCcEEEcccCCCCH
Q 024610 234 KFGRIRWQGFGMATP 248 (265)
Q Consensus 234 ~~grIRWagsG~at~ 248 (265)
..--|+|-.||++-+
T Consensus 74 ~~v~I~Wd~S~~~ag 88 (138)
T COG4316 74 NHVLILWDDSCTIAG 88 (138)
T ss_pred CceEEEEcccceehh
Confidence 345799999998765
No 138
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=31.85 E-value=75 Score=24.76 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=12.6
Q ss_pred CceEEEEEeeeccchHHHhhhcchhH
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFF 155 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~ 155 (265)
+++.||.++ ++||.+|.
T Consensus 19 ~~~vvV~f~---------a~wC~~C~ 35 (114)
T cd02992 19 PSAWLVEFY---------ASWCGHCR 35 (114)
T ss_pred CCeEEEEEE---------CCCCHHHH
Confidence 356777555 89999887
No 139
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=31.49 E-value=31 Score=28.58 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=15.6
Q ss_pred HhcccCCcccEEEEEeCCCcE
Q 024610 218 ELKILNLLTGYIFLLDKFGRI 238 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grI 238 (265)
..|..+ +||=||||.+|.|
T Consensus 57 ~~gw~D--IgYhflI~~dG~I 75 (142)
T smart00701 57 ELGWCD--IGYNFLVGGDGKV 75 (142)
T ss_pred cCCCCC--cCCeEEEcCCCEE
Confidence 345554 9999999999998
No 140
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=30.96 E-value=72 Score=30.29 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=22.2
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH----------hhcc-CCCeeEEEEeccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD-SKNVHLYEVSFID 173 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~-~~~vqiv~In~~e 173 (265)
.++.++|.++ ++||.+|.. .+.+ .+.+.++.|+...
T Consensus 363 ~~~~vlv~f~---------a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~ 409 (462)
T TIGR01130 363 ETKDVLVEFY---------APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA 409 (462)
T ss_pred CCCeEEEEEE---------CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC
Confidence 3666777555 899998862 2233 2256677776544
No 141
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=30.51 E-value=2.7e+02 Score=23.68 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=54.0
Q ss_pred eEEEEEeeeccch-HHHhhhcchhHHhhccCCCeeEEEEec--------ccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610 132 VSLVCLTFRASSQ-AMVDSWSSPFFEAFSDSKNVHLYEVSF--------IDSWLLCRSPIKRILLKIMRKSKDAGENVLQ 202 (265)
Q Consensus 132 vSIV~l~~~~~gq-~~~~sw~~p~~e~~~~~~~vqiv~In~--------~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~ 202 (265)
.-||-++.+..+| .++.+|.....+.=...|.=.+ -.+- -|-..+.--.+|--.++.+++..|..
T Consensus 44 Y~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv-~~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~----- 117 (157)
T PF08235_consen 44 YKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPV-LLSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPD----- 117 (157)
T ss_pred eEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCE-EECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCC-----
Confidence 5677788887666 4577777655432111121111 1110 01000000114555667778776642
Q ss_pred ceeEE-EcCCh-HH--HHHHhcccCCcccEEEEEeCCCcEE
Q 024610 203 RQIVY-SFGDH-YY--FRKELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 203 ~~~~y-~~g~~-~~--iRe~Lgi~N~~vGYVyLVD~~grIR 239 (265)
...+| .||+. .| --++.||. ..-||+||+.|+|.
T Consensus 118 ~~pf~agfGN~~tDv~aY~~vGip---~~rIF~I~~~g~~~ 155 (157)
T PF08235_consen 118 GNPFYAGFGNRSTDVIAYKAVGIP---KSRIFIINPKGEVK 155 (157)
T ss_pred CCeEEEecCCcHHHHHHHHHcCCC---hhhEEEECCCCeEe
Confidence 23333 67887 33 34677777 78999999999985
No 142
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=30.49 E-value=1.2e+02 Score=24.15 Aligned_cols=42 Identities=26% Similarity=0.188 Sum_probs=33.3
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
...+|+.+++.. ..--++||+.+|.+.=.-.++-+.+|+=.+
T Consensus 66 ~~~lr~~l~~~~-~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ 107 (118)
T PF13778_consen 66 IQALRKRLRIPP-GGFTVVLIGKDGGVKLRWPEPIDPEELFDT 107 (118)
T ss_pred HHHHHHHhCCCC-CceEEEEEeCCCcEEEecCCCCCHHHHHHH
Confidence 368999999994 336699999999998887777777776544
No 143
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=30.21 E-value=44 Score=24.27 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.3
Q ss_pred ccEEEEEeCCCcEEEccc
Q 024610 226 TGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 226 vGYVyLVD~~grIRWags 243 (265)
.-=|+++|.+|+|.|.-.
T Consensus 11 ~~~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 11 PDGIFVIDEDGRILYVNQ 28 (113)
T ss_dssp SSEEEEEETTSBEEEECH
T ss_pred CceEEEEeCcCeEEEECH
Confidence 345789999999999753
No 144
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=30.18 E-value=44 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.0
Q ss_pred EEEEeCCCcEEEcccC
Q 024610 229 IFLLDKFGRIRWQGFG 244 (265)
Q Consensus 229 VyLVD~~grIRWagsG 244 (265)
+.+||.+++|||..-+
T Consensus 12 i~~vD~~~~I~~~n~~ 27 (106)
T PF13596_consen 12 IIFVDRNLRIRYFNPA 27 (106)
T ss_dssp EEEEETTSBEEEE-SC
T ss_pred EEEEcCCCeEEEeChh
Confidence 6789999999997665
No 145
>PHA00447 lysozyme
Probab=30.05 E-value=52 Score=27.34 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=15.8
Q ss_pred HHhcccCCcccEEEEEeCCCcEE
Q 024610 217 KELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIR 239 (265)
+..|..+ +||=||||.+|+|=
T Consensus 36 ~~~gw~d--IgYhf~I~~dG~I~ 56 (142)
T PHA00447 36 KEQGWLD--VGYHFIIRRDGTVE 56 (142)
T ss_pred HHCCCCC--cCeEEEECCCCEEE
Confidence 3445554 99999999999873
No 146
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=30.02 E-value=2.4e+02 Score=21.13 Aligned_cols=35 Identities=29% Similarity=0.170 Sum_probs=24.1
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEEL 251 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~ 251 (265)
++..++.+.+|+.. +|-+++ +|+..+. |..+.+|+
T Consensus 52 ~~~~e~a~~~~V~~--vPt~vi---dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 52 ALFQDEVEERGIMS--VPAIFL---NGELFGF--GRMTLEEI 86 (89)
T ss_pred HhCHHHHHHcCCcc--CCEEEE---CCEEEEe--CCCCHHHH
Confidence 34456777888885 888864 5888885 56666663
No 147
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=29.78 E-value=2e+02 Score=26.38 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=56.2
Q ss_pred hhhcc---hhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC
Q 024610 148 DSWSS---PFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL 224 (265)
Q Consensus 148 ~sw~~---p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~ 224 (265)
..+|. |.+..|.+.-+++++.||++...+.. .|. . ..| ....+.+|+..
T Consensus 155 Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~---------------fp~--------~---~~d-~gqa~~l~v~~- 206 (248)
T PRK13703 155 DPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPL---------------LPD--------S---RTD-QGQAQRLGVKY- 206 (248)
T ss_pred CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCC---------------CCC--------C---ccC-hhHHHhcCCcc-
Confidence 55665 55678888889999999998743211 221 0 112 22447888865
Q ss_pred cccEEEEEeCCC-cEEEcccCCCCHHHH-HHHHHH
Q 024610 225 LTGYIFLLDKFG-RIRWQGFGMATPEEL-SSLLSC 257 (265)
Q Consensus 225 ~vGYVyLVD~~g-rIRWagsG~at~~E~-e~L~k~ 257 (265)
++=+|||+.+. ++.=.+.|..+.+|+ +.+...
T Consensus 207 -~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 207 -FPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred -cceEEEEECCCCcEEEEeeccCCHHHHHHHHHHH
Confidence 89999999995 888899999999998 444433
No 148
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.74 E-value=66 Score=27.99 Aligned_cols=26 Identities=0% Similarity=-0.098 Sum_probs=18.7
Q ss_pred hhhcchhH------Hhh-ccCCCeeEEEEeccc
Q 024610 148 DSWSSPFF------EAF-SDSKNVHLYEVSFID 173 (265)
Q Consensus 148 ~sw~~p~~------e~~-~~~~~vqiv~In~~e 173 (265)
++||.||. +.. ..++.+.++.|+.++
T Consensus 111 a~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~ 143 (192)
T cd02988 111 KDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ 143 (192)
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH
Confidence 89999886 222 345778888888764
No 149
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=28.15 E-value=4.3e+02 Score=24.19 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCCceEEEEEeeeccchHHHhhhcchhH----------Hhh--ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCC
Q 024610 128 AIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAF--SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKD 195 (265)
Q Consensus 128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~--~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p 195 (265)
..|+|+||++- ..+|.-|. ..+ ++.+++.++-||-.+.- .++.-+.|++.++
T Consensus 24 ~~G~VtvVALL---------~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~-------s~~~~~~l~~r~~ 87 (238)
T PF04592_consen 24 SLGHVTVVALL---------QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEH-------SRLKYWELKRRVS 87 (238)
T ss_pred cCCcEEeeeeh---------hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcc-------hhHHHHHHHHhCC
Confidence 46999999985 33333322 223 44578999999965421 2223345666666
Q ss_pred CCCccccceeEEEcC-ChHHHHHHhcccCCcccEEEEEeCCCcEEEc
Q 024610 196 AGENVLQRQIVYSFG-DHYYFRKELKILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 196 ~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWa 241 (265)
+. -.+|-=+ ...++=+.|+=+ -.=+||.|.=||+.+.
T Consensus 88 ~~------ipVyqq~~~q~dvW~~L~G~---kdD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 88 EH------IPVYQQDENQPDVWELLNGS---KDDFLIYDRCGRLTYH 125 (238)
T ss_pred CC------CceecCCccccCHHHHhCCC---cCcEEEEeccCcEEEE
Confidence 42 1232111 124555555544 6778999999998764
No 150
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=28.06 E-value=51 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=18.7
Q ss_pred cccCCcccEEEEEeCCCcEEEcccCCC
Q 024610 220 KILNLLTGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 220 gi~N~~vGYVyLVD~~grIRWagsG~a 246 (265)
.+.+...|+|||+|+++..+..+.+..
T Consensus 17 ~~~~~~~~~i~l~d~~~~~~~~~~~~~ 43 (148)
T PF13185_consen 17 ELTGADAGAIYLYDPDGQLLPVAASGD 43 (148)
T ss_dssp HHHS-SEEEEEEEETTSEEEEEEEESS
T ss_pred HHhCCCEEEEEEEECCCcEEEEEEeCC
Confidence 344455999999999987666666543
No 151
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.44 E-value=67 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=19.0
Q ss_pred hhhcchhH------Hhh-ccCCCeeEEEEecccc
Q 024610 148 DSWSSPFF------EAF-SDSKNVHLYEVSFIDS 174 (265)
Q Consensus 148 ~sw~~p~~------e~~-~~~~~vqiv~In~~e~ 174 (265)
++||.||. +++ ...|++=...|++++-
T Consensus 30 a~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c 63 (288)
T KOG0908|consen 30 ASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC 63 (288)
T ss_pred ecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh
Confidence 99999987 233 3347777778887663
No 152
>PF14465 NFRKB_winged: NFRKB Winged Helix-like; PDB: 3U21_B.
Probab=26.58 E-value=83 Score=24.96 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 223 NLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 223 N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
-.+++||=-.++.+.-+|.|.|..++.++..|-
T Consensus 65 ~~f~P~Ve~k~~~~~w~WIG~~rDsd~~L~~Lc 97 (100)
T PF14465_consen 65 SEFVPYVEYKEQTQQWQWIGAGRDSDKRLSALC 97 (100)
T ss_dssp TT---SEEEETTTTEEEE----TTTHHHHHHHH
T ss_pred CCceeeeeecccccceeeccCCCccHHHHHHHH
Confidence 357899988899999999999999999888763
No 153
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=26.03 E-value=77 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHHHhcccCCcccEEEEEeCCCcEEEcccCC---CCHHHHHHHHHHHH
Q 024610 215 FRKELKILNLLTGYIFLLDKFGRIRWQGFGM---ATPEELSSLLSCTS 259 (265)
Q Consensus 215 iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~---at~~E~e~L~k~~~ 259 (265)
+.+.| +.+..+--.-+++.+| ..|+.++. .+|+|+..|.++..
T Consensus 6 i~~~L-~~~~~~~~aaI~~~dG-~vwA~s~~f~~~~~~E~~~i~~~f~ 51 (121)
T PF00235_consen 6 IDEQL-IGTGNITKAAIIGSDG-SVWASSPGFSNISPEEAKAIIKAFN 51 (121)
T ss_dssp HHTHH-HTTSSESEEEEEETTS-SEEEEETTGGGCSHHHHHHHHHHHH
T ss_pred HHHHh-cccCcEeEEEEEcCCC-CEEEecCCCCCCCHHHHHHHHHHhc
Confidence 33344 3444466778899999 88997774 58999999998754
No 154
>KOG2994 consensus Uracil DNA glycosylase [Replication, recombination and repair]
Probab=25.61 E-value=43 Score=31.07 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHHHHHHccchhHHHHHhhhc--CCeeeeccCc
Q 024610 55 KERARLADEMNRGYFADVAELKKH--GGKIATANKI 88 (265)
Q Consensus 55 ~rrk~L~~e~~~~yf~D~~~~r~~--~GK~f~ap~~ 88 (265)
.=+++|..|+.++||.-++.|-.- ++++..+|+.
T Consensus 81 sW~~~L~~EF~KpYf~~lk~Fl~~E~~~~~vfPP~~ 116 (297)
T KOG2994|consen 81 SWFKHLKGEFGKPYFIKLKGFLAEERNSYTVFPPPH 116 (297)
T ss_pred HHHHhhhhhhcCHHHHHHHHHHHHhhcCCcccCCHH
Confidence 347899999999999999999763 5555555443
No 155
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=25.19 E-value=2.7e+02 Score=20.26 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=23.0
Q ss_pred HHHHHhcccCCcccEEEEEeCC-CcEEEcccCCCCHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKF-GRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~-grIRWagsG~at~~E~e~L~ 255 (265)
.+-+.+|+.-..++-+.+++.. |+..+...|.-+.++++...
T Consensus 57 ~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi 99 (103)
T cd02982 57 RHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFV 99 (103)
T ss_pred HHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHH
Confidence 3556666653236666666642 55555555554666555443
No 156
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=25.13 E-value=1e+02 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=14.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
.++.+.+|+.. +|-+++ +|+++|.|
T Consensus 42 ~~l~~~~~i~~--vPti~i---~~~~~~~g 66 (67)
T cd02973 42 PDLADEYGVMS--VPAIVI---NGKVEFVG 66 (67)
T ss_pred HhHHHHcCCcc--cCEEEE---CCEEEEec
Confidence 34555666653 666644 35787776
No 157
>PTZ00062 glutaredoxin; Provisional
Probab=25.10 E-value=71 Score=28.25 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=18.3
Q ss_pred hhhcchhH------Hhh-ccCCCeeEEEEecc
Q 024610 148 DSWSSPFF------EAF-SDSKNVHLYEVSFI 172 (265)
Q Consensus 148 ~sw~~p~~------e~~-~~~~~vqiv~In~~ 172 (265)
++||.||. +.+ .+.|.++++.|+.+
T Consensus 26 a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d 57 (204)
T PTZ00062 26 SSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA 57 (204)
T ss_pred CCCCcchHHHHHHHHHHHHHCCCcEEEEEccc
Confidence 89999986 222 45688888888864
No 158
>PF12200 DUF3597: Domain of unknown function (DUF3597); InterPro: IPR022016 This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. ; PDB: 2GQB_A.
Probab=25.06 E-value=75 Score=26.28 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=24.2
Q ss_pred ccchhhhcChhHHHHHHHHHHHHHccch-hHH------------HHHhhhcCCee
Q 024610 41 FLDIYQLGNKQAVEKERARLADEMNRGY-FAD------------VAELKKHGGKI 82 (265)
Q Consensus 41 f~~~~~~~~~e~~~~rrk~L~~e~~~~y-f~D------------~~~~r~~~GK~ 82 (265)
.-|+.++.+-+.-+..||||..|+.... +-| |+.+-.+|||+
T Consensus 72 IVDLlKlLglDSSl~aRkeLA~eL~~~~~~~dsA~~NiwLhk~Vm~kLA~NGGkv 126 (127)
T PF12200_consen 72 IVDLLKLLGLDSSLAARKELAKELGYTGDYNDSASMNIWLHKQVMQKLAENGGKV 126 (127)
T ss_dssp HHHHHHHT----SHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHGGGSEE-
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566667777888999999999998776 433 34445577775
No 159
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=24.23 E-value=71 Score=25.19 Aligned_cols=27 Identities=30% Similarity=0.617 Sum_probs=22.1
Q ss_pred cccCCcccEEEEEeCCCcEEEcccCCCCH
Q 024610 220 KILNLLTGYIFLLDKFGRIRWQGFGMATP 248 (265)
Q Consensus 220 gi~N~~vGYVyLVD~~grIRWagsG~at~ 248 (265)
.|.+ .|-..|.|..+++.|+.+++++.
T Consensus 58 ~L~~--~GNlvl~d~~~~~lW~Sf~~ptd 84 (114)
T PF01453_consen 58 VLQD--DGNLVLYDSSGNVLWQSFDYPTD 84 (114)
T ss_dssp EEET--TSEEEEEETTSEEEEESTTSSS-
T ss_pred EEeC--CCCEEEEeecceEEEeecCCCcc
Confidence 3444 79999999999999999888764
No 160
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=23.12 E-value=61 Score=32.10 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=16.5
Q ss_pred CcccEEEEEeCCCcEEEcc
Q 024610 224 LLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 224 ~~vGYVyLVD~~grIRWag 242 (265)
.+-|++|+||++|+|-|..
T Consensus 87 tLDGF~fvva~dGkimYIS 105 (598)
T KOG3559|consen 87 TLDGFIFVVAPDGKIMYIS 105 (598)
T ss_pred hhcceEEEEeCCCCEEEEe
Confidence 3579999999999999864
No 161
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=23.09 E-value=69 Score=30.91 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=27.6
Q ss_pred HHhcccCCcccEEEEE-eCCCcEEEcccCCC----CHHHHHHHHHHHHhhhcC
Q 024610 217 KELKILNLLTGYIFLL-DKFGRIRWQGFGMA----TPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLV-D~~grIRWagsG~a----t~~E~e~L~k~~~~Ll~e 264 (265)
+-.-|+|.+=|-=+|= -.+-.|||.|+|.. .+++.+.|.+-+..|-.+
T Consensus 107 RIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~ 159 (354)
T KOG2577|consen 107 RIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQE 159 (354)
T ss_pred eeeehhhhhhcccceeeccccceeeecCCCccccccHHHHHHHHHHHHHHHHH
Confidence 3344555544422221 13457999999986 456666666666655443
No 162
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=23.03 E-value=2.6e+02 Score=22.64 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=33.9
Q ss_pred hHHHHHHhcccCCcccEEEEEe-CCCcEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLD-KFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWagsG~at~~E~e~L 254 (265)
...+-+.+|+.....|.+.++| ..++..|.-.|..+++.++..
T Consensus 138 ~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~F 181 (184)
T PF13848_consen 138 FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKF 181 (184)
T ss_dssp THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHH
T ss_pred hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHH
Confidence 3567789999999999999999 667778877888888877654
No 163
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=22.97 E-value=99 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.6
Q ss_pred cCCCCHHHHHHHHHHHHhhhc
Q 024610 243 FGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 243 sG~at~~E~e~L~k~~~~Ll~ 263 (265)
.|.+|+||+..|...+..+..
T Consensus 8 rGnPt~eElAAL~aVlaa~~a 28 (62)
T PF13822_consen 8 RGNPTDEELAALTAVLAARAA 28 (62)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 589999999999988776643
No 164
>PTZ00102 disulphide isomerase; Provisional
Probab=22.76 E-value=6.4e+02 Score=24.14 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=24.5
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
..++-+.++|.. .|-+++++..+.+++ .|.-+.+++.
T Consensus 95 ~~~l~~~~~i~~--~Pt~~~~~~g~~~~y--~g~~~~~~l~ 131 (477)
T PTZ00102 95 EMELAQEFGVRG--YPTIKFFNKGNPVNY--SGGRTADGIV 131 (477)
T ss_pred CHHHHHhcCCCc--ccEEEEEECCceEEe--cCCCCHHHHH
Confidence 356777788875 788888886666755 4555555443
No 165
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=22.66 E-value=60 Score=30.51 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=15.9
Q ss_pred ccEEEEEeCCCcEEEcccC
Q 024610 226 TGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 226 vGYVyLVD~~grIRWagsG 244 (265)
.-+||+||++|+++|+-.-
T Consensus 104 ~d~vf~vd~~G~~vy~~~~ 122 (295)
T COG3322 104 LDGVFVVDPSGKLVYSKLV 122 (295)
T ss_pred ccEEEEECCCCCEEEEeee
Confidence 4489999999999997643
No 166
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.18 E-value=5.5e+02 Score=22.69 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=55.9
Q ss_pred hhccCCCeeEEEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEE
Q 024610 157 AFSDSKNVHLYEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFL 231 (265)
Q Consensus 157 ~~~~~~~vqiv~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyL 231 (265)
.|++. +.|++-++++.-.. ++| ....||.-+-+. -.-.+ .-+.+.+|-+.+||.-...|. .|+
T Consensus 62 eF~~~-n~eVig~S~DS~fshlAW-------~ntprk~gGlg~---~~iPl-lsD~~~~IsrdyGvL~~~~G~~lRglfI 129 (196)
T KOG0852|consen 62 EFRKL-NTEVLGISTDSVFSHLAW-------INTPRKQGGLGP---LNIPL-LSDLNHEISRDYGVLKEDEGIALRGLFI 129 (196)
T ss_pred HHHhc-CCeEEEEeccchhhhhhH-------hcCchhhCCcCc---cccce-eeccchhhHHhcCceecCCCcceeeeEE
Confidence 34433 79999999986432 222 111355333220 11222 236678899999999999884 789
Q ss_pred EeCCCcEEEcccCCC----CHHHHHHHHHHHH
Q 024610 232 LDKFGRIRWQGFGMA----TPEELSSLLSCTS 259 (265)
Q Consensus 232 VD~~grIRWagsG~a----t~~E~e~L~k~~~ 259 (265)
||.+|.+|=.+..+- +-+|.-.|..+.+
T Consensus 130 Id~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 130 IDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred EccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 999999988665542 2356656655543
No 167
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=21.97 E-value=1.6e+02 Score=24.46 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=34.5
Q ss_pred chHHHHHHHHhcCCCCCccccceeEE-EcCCh---HHHHHHhcccCCcccEEEEEeCCCcEE
Q 024610 182 IKRILLKIMRKSKDAGENVLQRQIVY-SFGDH---YYFRKELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 182 lk~~~~~~lrk~~p~~~~~l~~~~~y-~~g~~---~~iRe~Lgi~N~~vGYVyLVD~~grIR 239 (265)
+|.-.+..|+...|+. ...+| .+|++ -..-++.||. .+-||+||+.|+|+
T Consensus 102 ~K~~~l~~i~~~~~~~-----~~~f~~~~gn~~~D~~~y~~~gi~---~~~i~~i~~~~~~~ 155 (157)
T smart00775 102 FKIACLRDIKSLFPPQ-----GNPFYAGFGNRITDVISYSAVGIP---PSRIFTINPKGEVH 155 (157)
T ss_pred HHHHHHHHHHHhcCCC-----CCCEEEEeCCCchhHHHHHHcCCC---hhhEEEECCCCccc
Confidence 4555667777777752 23333 47774 3455777777 79999999999985
No 168
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=21.89 E-value=98 Score=24.66 Aligned_cols=32 Identities=9% Similarity=0.296 Sum_probs=24.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a 246 (265)
+.|-+.+|+.- -+|-++|+. +|++.|-+|.++
T Consensus 67 n~IAe~~~V~H-eSPQ~ili~-~g~~v~~aSH~~ 98 (105)
T PF11009_consen 67 NAIAEDFGVKH-ESPQVILIK-NGKVVWHASHWD 98 (105)
T ss_dssp HHHHHHHT-----SSEEEEEE-TTEEEEEEEGGG
T ss_pred HHHHHHhCCCc-CCCcEEEEE-CCEEEEECcccc
Confidence 55778888875 799999999 999999998763
No 169
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.57 E-value=75 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=13.5
Q ss_pred HHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
+.+... ..||+|+.|.+|.+....
T Consensus 49 ~~~r~~--~~gY~fi~d~~g~~l~hp 72 (95)
T PF08269_consen 49 RALRYG--GDGYFFIYDMDGVVLAHP 72 (95)
T ss_dssp HH--SB--TTB--EEE-TTSBEEEES
T ss_pred hccccC--CCCeEEEEeCCCeEEEcC
Confidence 344453 479999999999876554
No 170
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=21.40 E-value=2.9e+02 Score=19.15 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=17.7
Q ss_pred HHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+.+|+.- +|=+++ +|+++|.| ..+++++..+.
T Consensus 47 ~~~~v~~--vPt~~~---~g~~~~~G--~~~~~~l~~~l 78 (82)
T TIGR00411 47 MEYGIMA--VPAIVI---NGDVEFIG--APTKEELVEAI 78 (82)
T ss_pred HHcCCcc--CCEEEE---CCEEEEec--CCCHHHHHHHH
Confidence 3345442 555554 56777664 56677665443
No 171
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=21.12 E-value=1.1e+02 Score=27.62 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=32.9
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..+..+=+++|++- |+.+++.|.+|++. .-.|+.++++++.+.
T Consensus 206 ~~n~~l~~~lGv~G--TPaiv~~d~~G~~~-~v~G~~~~~~L~~~l 248 (251)
T PRK11657 206 ADNQKLMDDLGANA--TPAIYYMDKDGTLQ-QVVGLPDPAQLAEIM 248 (251)
T ss_pred HHHHHHHHHcCCCC--CCEEEEECCCCCEE-EecCCCCHHHHHHHh
Confidence 33466778899986 99999999999432 346888999887654
No 172
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=20.59 E-value=86 Score=22.16 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.3
Q ss_pred EEEEeCCCcEEEccc
Q 024610 229 IFLLDKFGRIRWQGF 243 (265)
Q Consensus 229 VyLVD~~grIRWags 243 (265)
++++|.+|+|.|+-.
T Consensus 4 i~i~d~~g~i~~~N~ 18 (104)
T PF13426_consen 4 IFILDPDGRILYVNP 18 (104)
T ss_dssp EEEEETTSBEEEE-H
T ss_pred EEEECCcCcEEehhH
Confidence 689999999999753
Done!