Query 024610
Match_columns 265
No_of_seqs 140 out of 193
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kh7_A Thiol:disulfide interch 99.2 2.7E-10 9.3E-15 94.7 14.5 147 79-264 17-172 (176)
2 3gkn_A Bacterioferritin comigr 99.1 3.5E-10 1.2E-14 91.8 9.9 134 93-264 8-163 (163)
3 2lrt_A Uncharacterized protein 99.1 3.5E-09 1.2E-13 85.7 13.9 118 93-252 10-140 (152)
4 3fw2_A Thiol-disulfide oxidore 99.0 3.9E-09 1.3E-13 84.4 13.2 127 93-263 6-148 (150)
5 3drn_A Peroxiredoxin, bacterio 99.0 4E-09 1.4E-13 85.9 13.2 131 95-263 5-149 (161)
6 4g2e_A Peroxiredoxin; redox pr 99.0 1.5E-09 5.1E-14 89.0 10.5 130 95-261 7-156 (157)
7 3fkf_A Thiol-disulfide oxidore 99.0 7.3E-09 2.5E-13 81.5 13.4 129 93-265 6-148 (148)
8 3hcz_A Possible thiol-disulfid 99.0 6.8E-09 2.3E-13 81.7 12.8 128 93-263 6-146 (148)
9 3hdc_A Thioredoxin family prot 99.0 5.2E-09 1.8E-13 84.6 12.3 125 93-259 16-149 (158)
10 3ewl_A Uncharacterized conserv 99.0 1E-08 3.6E-13 80.7 13.0 120 95-256 4-137 (142)
11 2yzh_A Probable thiol peroxida 99.0 7.7E-09 2.6E-13 85.1 12.7 145 79-262 10-171 (171)
12 2f9s_A Thiol-disulfide oxidore 99.0 1.2E-08 4.1E-13 81.3 13.1 122 96-256 4-134 (151)
13 1psq_A Probable thiol peroxida 99.0 9.2E-09 3.1E-13 84.1 12.7 131 94-260 18-162 (163)
14 2jsy_A Probable thiol peroxida 99.0 2.4E-09 8.3E-14 87.3 9.2 133 94-263 20-167 (167)
15 3lwa_A Secreted thiol-disulfid 99.0 7.3E-09 2.5E-13 85.6 12.2 135 89-264 28-182 (183)
16 3or5_A Thiol:disulfide interch 98.9 2.3E-08 7.8E-13 80.3 14.5 123 92-256 8-147 (165)
17 2lja_A Putative thiol-disulfid 98.9 2.4E-08 8.2E-13 79.3 14.4 124 95-257 6-140 (152)
18 3gl3_A Putative thiol:disulfid 98.9 1.5E-08 5.2E-13 80.5 13.1 128 94-263 5-142 (152)
19 3erw_A Sporulation thiol-disul 98.9 6.9E-09 2.4E-13 81.1 10.8 124 93-254 10-143 (145)
20 3lor_A Thiol-disulfide isomera 98.9 3E-09 1E-13 85.4 8.8 127 95-264 6-156 (160)
21 3raz_A Thioredoxin-related pro 98.9 2.5E-08 8.7E-13 79.7 14.3 124 98-257 3-137 (151)
22 3kcm_A Thioredoxin family prot 98.9 1.1E-08 3.7E-13 81.5 11.9 130 94-263 4-143 (154)
23 3eyt_A Uncharacterized protein 98.9 6.3E-09 2.2E-13 83.4 10.5 127 95-264 3-153 (158)
24 1xvw_A Hypothetical protein RV 98.9 8.6E-09 2.9E-13 83.1 11.2 133 93-262 10-159 (160)
25 1lu4_A Soluble secreted antige 98.9 1.3E-08 4.5E-13 78.9 11.7 121 96-256 2-132 (136)
26 1xzo_A BSSCO, hypothetical pro 98.9 1.7E-08 5.8E-13 82.1 12.8 138 94-264 9-173 (174)
27 3ixr_A Bacterioferritin comigr 98.9 3.3E-09 1.1E-13 88.6 8.4 129 98-264 31-179 (179)
28 4evm_A Thioredoxin family prot 98.9 3.1E-08 1.1E-12 76.0 13.3 126 98-256 2-135 (138)
29 2rli_A SCO2 protein homolog, m 98.9 1.2E-08 4E-13 82.9 11.3 121 99-254 7-158 (171)
30 4fo5_A Thioredoxin-like protei 98.9 1.3E-08 4.3E-13 80.8 11.2 118 94-254 9-139 (143)
31 3p7x_A Probable thiol peroxida 98.9 1.2E-08 4.2E-13 83.6 11.0 131 94-260 22-165 (166)
32 1kng_A Thiol:disulfide interch 98.9 4.7E-08 1.6E-12 77.8 14.2 131 93-261 9-154 (156)
33 3ia1_A THIO-disulfide isomeras 98.9 2E-08 6.8E-13 80.1 11.8 124 93-255 6-139 (154)
34 3eur_A Uncharacterized protein 98.9 3.1E-08 1.1E-12 78.4 12.9 120 93-254 6-139 (142)
35 2ggt_A SCO1 protein homolog, m 98.9 2.3E-08 7.8E-13 80.4 12.0 127 97-263 2-161 (164)
36 3kij_A Probable glutathione pe 98.9 1.4E-08 4.6E-13 84.4 10.9 133 86-252 6-162 (180)
37 4gqc_A Thiol peroxidase, perox 98.9 5.1E-09 1.7E-13 86.7 8.2 134 95-264 8-161 (164)
38 1zzo_A RV1677; thioredoxin fol 98.9 5.8E-08 2E-12 74.8 13.6 120 96-255 3-130 (136)
39 1jfu_A Thiol:disulfide interch 98.9 1.7E-08 5.9E-13 83.5 11.1 134 92-264 34-181 (186)
40 2b1k_A Thiol:disulfide interch 98.9 3.8E-08 1.3E-12 79.9 12.9 126 91-254 21-154 (168)
41 3ha9_A Uncharacterized thiored 98.9 1.3E-08 4.4E-13 82.5 10.0 120 95-256 14-160 (165)
42 2l5o_A Putative thioredoxin; s 98.8 3.3E-08 1.1E-12 78.6 12.1 122 95-255 5-136 (153)
43 3u5r_E Uncharacterized protein 98.8 1.5E-08 5.2E-13 87.2 10.6 131 93-264 33-188 (218)
44 2lrn_A Thiol:disulfide interch 98.8 5.3E-08 1.8E-12 77.9 12.8 108 95-243 6-127 (152)
45 2cvb_A Probable thiol-disulfid 98.8 1.6E-08 5.4E-13 84.0 9.9 111 94-242 9-133 (188)
46 3dwv_A Glutathione peroxidase- 98.8 9.7E-09 3.3E-13 86.0 7.9 136 95-263 23-183 (187)
47 1xvq_A Thiol peroxidase; thior 98.8 2.5E-08 8.5E-13 82.7 10.0 126 94-257 20-162 (175)
48 3ztl_A Thioredoxin peroxidase; 98.8 3.5E-08 1.2E-12 85.4 10.5 138 93-261 41-196 (222)
49 2b7k_A SCO1 protein; metalloch 98.8 5.2E-08 1.8E-12 82.7 11.3 133 97-264 20-184 (200)
50 2b5x_A YKUV protein, TRXY; thi 98.8 8.8E-08 3E-12 75.0 11.9 131 95-264 4-146 (148)
51 2ls5_A Uncharacterized protein 98.2 8.6E-10 2.9E-14 89.0 0.0 131 95-263 10-151 (159)
52 3me7_A Putative uncharacterize 98.8 9.2E-08 3.2E-12 79.1 12.2 128 95-253 4-155 (170)
53 1q98_A Thiol peroxidase, TPX; 98.7 2.5E-08 8.5E-13 81.8 8.3 125 95-255 20-161 (165)
54 3zrd_A Thiol peroxidase; oxido 98.7 4E-08 1.4E-12 83.9 9.6 116 94-245 54-184 (200)
55 2k6v_A Putative cytochrome C o 98.7 9.1E-08 3.1E-12 77.5 10.9 120 97-253 15-166 (172)
56 2p5q_A Glutathione peroxidase 98.7 6.4E-08 2.2E-12 78.2 9.7 133 94-264 8-169 (170)
57 2v1m_A Glutathione peroxidase; 98.7 7.9E-08 2.7E-12 77.6 10.3 133 95-264 8-168 (169)
58 1n8j_A AHPC, alkyl hydroperoxi 98.7 5.2E-08 1.8E-12 81.9 9.0 117 95-246 4-138 (186)
59 2ywi_A Hypothetical conserved 98.7 9.3E-08 3.2E-12 79.5 10.1 128 94-263 20-174 (196)
60 2c0d_A Thioredoxin peroxidase 98.7 7.7E-08 2.6E-12 83.7 9.9 140 93-262 26-183 (221)
61 2f8a_A Glutathione peroxidase 98.7 1.2E-07 4.2E-12 81.4 11.0 57 94-172 22-89 (208)
62 1i5g_A Tryparedoxin II; electr 98.7 7.6E-08 2.6E-12 76.2 8.9 114 94-244 3-128 (144)
63 2pn8_A Peroxiredoxin-4; thiore 98.7 8.3E-08 2.8E-12 82.6 9.4 135 95-262 22-176 (211)
64 3keb_A Probable thiol peroxida 98.7 1.4E-07 4.9E-12 83.1 11.0 132 94-262 24-175 (224)
65 2h30_A Thioredoxin, peptide me 98.6 3E-07 1E-11 73.8 11.4 120 102-256 22-152 (164)
66 2bmx_A Alkyl hydroperoxidase C 98.6 1.8E-07 6.3E-12 78.6 10.2 134 95-262 7-169 (195)
67 1we0_A Alkyl hydroperoxide red 98.6 2.6E-07 8.9E-12 76.9 11.0 116 95-246 4-139 (187)
68 4hde_A SCO1/SENC family lipopr 98.6 2.1E-07 7.1E-12 77.3 10.2 143 92-263 6-170 (170)
69 2p31_A CL683, glutathione pero 98.6 5.6E-08 1.9E-12 80.8 6.7 132 95-262 26-180 (181)
70 3cmi_A Peroxiredoxin HYR1; thi 98.6 5.6E-08 1.9E-12 79.7 6.6 132 96-264 10-169 (171)
71 1qmv_A Human thioredoxin perox 98.6 2.2E-07 7.5E-12 78.2 10.4 136 95-261 8-161 (197)
72 1uul_A Tryparedoxin peroxidase 98.6 2.7E-07 9.3E-12 78.1 10.5 123 94-247 8-148 (202)
73 2a4v_A Peroxiredoxin DOT5; yea 98.6 2.1E-07 7E-12 75.4 9.4 127 95-261 10-152 (159)
74 2vup_A Glutathione peroxidase- 98.6 1.4E-07 4.8E-12 79.0 8.6 135 95-264 25-186 (190)
75 1zof_A Alkyl hydroperoxide-red 98.6 3.1E-07 1.1E-11 77.2 10.5 122 95-246 4-143 (198)
76 2h01_A 2-Cys peroxiredoxin; th 98.6 3E-07 1E-11 76.9 10.3 138 95-262 3-158 (192)
77 1o73_A Tryparedoxin; electron 98.5 1.2E-07 4.2E-12 74.6 6.8 114 94-245 4-129 (144)
78 3qpm_A Peroxiredoxin; oxidored 98.5 3.7E-07 1.3E-11 80.4 10.4 137 94-261 50-204 (240)
79 1zye_A Thioredoxin-dependent p 98.5 4.3E-07 1.5E-11 78.5 10.5 138 94-262 29-184 (220)
80 1o8x_A Tryparedoxin, TRYX, TXN 98.5 3.2E-07 1.1E-11 72.8 8.9 112 95-244 5-128 (146)
81 2i81_A 2-Cys peroxiredoxin; st 98.5 7.6E-07 2.6E-11 76.6 11.9 125 93-247 22-163 (213)
82 2obi_A PHGPX, GPX-4, phospholi 98.5 4E-07 1.4E-11 75.5 9.6 125 94-253 23-177 (183)
83 2hyx_A Protein DIPZ; thioredox 98.5 4.6E-07 1.6E-11 84.6 10.8 123 94-255 53-194 (352)
84 3mng_A Peroxiredoxin-5, mitoch 98.5 3.9E-07 1.3E-11 76.5 9.1 119 93-246 16-157 (173)
85 1prx_A HORF6; peroxiredoxin, h 98.5 5.2E-07 1.8E-11 78.6 9.8 135 95-261 8-167 (224)
86 2gs3_A PHGPX, GPX-4, phospholi 98.5 1.2E-06 4.1E-11 72.9 11.3 123 95-253 26-179 (185)
87 2i3y_A Epididymal secretory gl 98.5 2.4E-06 8.2E-11 74.2 13.4 59 92-172 29-97 (215)
88 3s9f_A Tryparedoxin; thioredox 98.4 1.5E-07 5.2E-12 77.3 4.5 115 94-246 24-150 (165)
89 1xcc_A 1-Cys peroxiredoxin; un 98.4 1.4E-06 4.7E-11 75.7 10.1 121 95-246 6-148 (220)
90 2r37_A Glutathione peroxidase 98.4 4E-06 1.4E-10 72.2 12.3 58 93-172 12-79 (207)
91 3tjj_A Peroxiredoxin-4; thiore 98.4 1.1E-06 3.9E-11 78.2 8.8 122 94-246 64-202 (254)
92 2lus_A Thioredoxion; CR-Trp16, 97.7 5.3E-08 1.8E-12 76.4 0.0 113 97-244 3-127 (143)
93 1tp9_A Peroxiredoxin, PRX D (t 98.3 2.2E-06 7.7E-11 70.0 9.8 116 94-245 6-146 (162)
94 3uma_A Hypothetical peroxiredo 98.3 4.5E-07 1.5E-11 76.9 5.7 121 92-247 26-169 (184)
95 2v2g_A Peroxiredoxin 6; oxidor 98.3 1.2E-06 4E-11 77.2 8.5 134 95-261 6-163 (233)
96 3a2v_A Probable peroxiredoxin; 98.3 5.1E-06 1.7E-10 74.0 11.4 132 95-257 8-159 (249)
97 2wfc_A Peroxiredoxin 5, PRDX5; 98.3 1.7E-06 5.6E-11 71.8 7.7 117 95-246 6-143 (167)
98 4eo3_A Bacterioferritin comigr 98.2 1E-05 3.4E-10 74.4 12.3 130 97-263 3-139 (322)
99 1nm3_A Protein HI0572; hybrid, 98.0 1.1E-05 3.6E-10 70.0 7.1 117 95-247 6-145 (241)
100 2pwj_A Mitochondrial peroxired 98.0 1.9E-05 6.6E-10 65.4 8.4 115 96-246 11-155 (171)
101 2l57_A Uncharacterized protein 97.9 4.9E-05 1.7E-09 58.6 9.3 42 213-256 72-113 (126)
102 3sbc_A Peroxiredoxin TSA1; alp 97.6 0.0003 1E-08 61.5 9.1 135 93-258 24-179 (216)
103 3fk8_A Disulphide isomerase; A 97.5 0.00038 1.3E-08 54.0 8.8 46 212-257 77-130 (133)
104 3tue_A Tryparedoxin peroxidase 97.5 0.00043 1.5E-08 60.6 10.0 119 93-242 27-163 (219)
105 3f9u_A Putative exported cytoc 97.5 0.00017 5.9E-09 58.6 6.5 108 128-260 45-167 (172)
106 2fwh_A Thiol:disulfide interch 97.5 0.00029 9.8E-09 55.3 7.4 83 129-256 30-124 (134)
107 2kuc_A Putative disulphide-iso 97.3 0.0009 3.1E-08 51.3 7.7 43 212-256 75-117 (130)
108 4f82_A Thioredoxin reductase; 97.2 0.00061 2.1E-08 57.7 6.2 127 94-247 12-160 (176)
109 2ju5_A Thioredoxin disulfide i 97.0 0.0014 4.8E-08 52.7 7.1 94 129-263 46-152 (154)
110 3ul3_B Thioredoxin, thioredoxi 97.0 0.0053 1.8E-07 47.3 10.2 40 213-255 86-125 (128)
111 2pu9_C TRX-F, thioredoxin F-ty 96.9 0.0077 2.6E-07 44.8 10.0 77 129-255 23-106 (111)
112 2l6c_A Thioredoxin; oxidoreduc 96.9 0.0063 2.2E-07 45.7 9.5 42 212-256 61-102 (110)
113 4euy_A Uncharacterized protein 96.9 0.0054 1.9E-07 45.3 8.8 77 129-255 17-100 (105)
114 3hxs_A Thioredoxin, TRXP; elec 96.9 0.013 4.5E-07 45.4 11.2 43 210-255 92-134 (141)
115 2wz9_A Glutaredoxin-3; protein 96.8 0.0075 2.5E-07 48.1 9.8 80 130-263 32-118 (153)
116 3f3q_A Thioredoxin-1; His TAG, 96.8 0.0099 3.4E-07 44.5 9.6 40 212-255 66-105 (109)
117 1faa_A Thioredoxin F; electron 96.7 0.01 3.4E-07 45.0 9.3 77 129-255 36-119 (124)
118 3cxg_A Putative thioredoxin; m 96.7 0.0077 2.6E-07 47.1 8.8 42 211-255 80-124 (133)
119 3d22_A TRXH4, thioredoxin H-ty 96.7 0.008 2.7E-07 46.6 8.8 76 129-255 45-127 (139)
120 3qfa_C Thioredoxin; protein-pr 96.7 0.017 5.8E-07 43.7 10.1 76 129-255 30-112 (116)
121 3zzx_A Thioredoxin; oxidoreduc 96.6 0.018 6.3E-07 43.6 9.8 39 213-255 63-101 (105)
122 2i4a_A Thioredoxin; acidophIle 96.6 0.02 6.9E-07 41.6 9.7 40 214-256 65-104 (107)
123 1xfl_A Thioredoxin H1; AT3G510 96.5 0.02 6.9E-07 44.0 9.8 38 213-254 81-118 (124)
124 1syr_A Thioredoxin; SGPP, stru 96.5 0.019 6.7E-07 42.8 9.5 39 213-255 69-107 (112)
125 3die_A Thioredoxin, TRX; elect 96.5 0.026 8.8E-07 41.0 9.8 41 212-255 62-102 (106)
126 2l5l_A Thioredoxin; structural 96.5 0.028 9.5E-07 43.6 10.6 42 212-256 81-122 (136)
127 2vim_A Thioredoxin, TRX; thior 96.4 0.031 1.1E-06 40.3 9.7 39 213-255 62-100 (104)
128 2vlu_A Thioredoxin, thioredoxi 96.4 0.026 8.8E-07 42.5 9.5 45 213-264 77-121 (122)
129 2voc_A Thioredoxin; electron t 96.4 0.03 1E-06 41.8 9.8 39 214-255 62-100 (112)
130 3gix_A Thioredoxin-like protei 96.4 0.02 7E-07 45.8 9.4 79 129-257 22-118 (149)
131 3emx_A Thioredoxin; structural 96.4 0.011 3.7E-07 46.2 7.5 78 148-257 40-123 (135)
132 1ti3_A Thioredoxin H, PTTRXH1; 96.3 0.022 7.6E-07 41.9 8.6 39 213-255 69-107 (113)
133 1gh2_A Thioredoxin-like protei 96.3 0.028 9.7E-07 41.3 9.1 36 213-252 64-99 (107)
134 2o8v_B Thioredoxin 1; disulfid 96.3 0.016 5.5E-07 44.9 8.0 78 129-256 39-124 (128)
135 1ep7_A Thioredoxin CH1, H-type 96.3 0.034 1.1E-06 40.9 9.4 39 212-254 67-105 (112)
136 3m9j_A Thioredoxin; oxidoreduc 96.2 0.029 9.8E-07 40.7 8.9 39 213-255 63-101 (105)
137 3tco_A Thioredoxin (TRXA-1); d 96.2 0.066 2.3E-06 38.8 10.9 44 210-256 62-105 (109)
138 1x5d_A Protein disulfide-isome 96.2 0.027 9.3E-07 42.8 9.1 40 213-255 73-112 (133)
139 1thx_A Thioredoxin, thioredoxi 96.2 0.064 2.2E-06 39.4 10.9 41 213-256 69-109 (115)
140 2e0q_A Thioredoxin; electron t 96.2 0.038 1.3E-06 39.6 9.4 40 213-255 59-98 (104)
141 2trx_A Thioredoxin; electron t 96.2 0.062 2.1E-06 39.2 10.6 41 213-256 64-104 (108)
142 2xhf_A Peroxiredoxin 5; oxidor 96.1 0.045 1.5E-06 45.7 10.5 116 93-245 15-152 (171)
143 1dby_A Chloroplast thioredoxin 96.1 0.1 3.5E-06 37.9 11.4 41 212-255 62-102 (107)
144 1w4v_A Thioredoxin, mitochondr 96.1 0.075 2.6E-06 40.1 10.9 41 212-255 74-114 (119)
145 1nsw_A Thioredoxin, TRX; therm 96.1 0.062 2.1E-06 39.0 10.1 39 213-254 61-99 (105)
146 2oe3_A Thioredoxin-3; electron 96.1 0.039 1.3E-06 41.7 9.2 39 213-255 73-111 (114)
147 2f51_A Thioredoxin; electron t 96.1 0.024 8.2E-07 43.1 7.9 40 213-255 66-108 (118)
148 1r26_A Thioredoxin; redox-acti 96.0 0.04 1.4E-06 42.5 9.2 80 129-262 36-122 (125)
149 3d6i_A Monothiol glutaredoxin- 96.0 0.043 1.5E-06 40.5 9.0 36 213-252 66-101 (112)
150 1xwb_A Thioredoxin; dimerizati 95.9 0.081 2.8E-06 38.2 9.8 38 213-254 64-101 (106)
151 2j23_A Thioredoxin; immune pro 95.8 0.054 1.8E-06 41.1 9.0 41 212-256 77-117 (121)
152 2vm1_A Thioredoxin, thioredoxi 95.8 0.069 2.4E-06 39.5 9.4 40 212-255 70-109 (118)
153 3p2a_A Thioredoxin 2, putative 95.8 0.1 3.6E-06 40.7 10.8 42 212-256 98-139 (148)
154 3uvt_A Thioredoxin domain-cont 95.7 0.11 3.8E-06 37.8 10.2 41 213-256 68-108 (111)
155 1t00_A Thioredoxin, TRX; redox 95.7 0.12 4E-06 38.0 10.3 41 212-255 66-106 (112)
156 1fb6_A Thioredoxin M; electron 95.6 0.15 5E-06 36.7 10.4 42 212-256 61-102 (105)
157 2xc2_A Thioredoxinn; oxidoredu 95.6 0.097 3.3E-06 39.0 9.6 38 213-254 75-112 (117)
158 1zma_A Bacterocin transport ac 95.6 0.049 1.7E-06 40.9 8.0 39 213-254 77-115 (118)
159 3apq_A DNAJ homolog subfamily 95.6 0.023 7.8E-07 47.7 6.6 106 89-256 85-198 (210)
160 1xiy_A Peroxiredoxin, pfaop; a 95.5 0.07 2.4E-06 44.8 9.3 123 95-245 4-154 (182)
161 2yzu_A Thioredoxin; redox prot 95.5 0.18 6E-06 36.3 10.5 40 213-255 62-101 (109)
162 3ph9_A Anterior gradient prote 95.4 0.007 2.4E-07 49.5 2.6 40 224-263 99-145 (151)
163 1sen_A Thioredoxin-like protei 95.4 0.012 4E-07 47.9 3.8 26 220-245 98-123 (164)
164 3qou_A Protein YBBN; thioredox 95.4 0.048 1.6E-06 47.5 8.0 40 213-255 70-109 (287)
165 2i1u_A Thioredoxin, TRX, MPT46 95.2 0.24 8.3E-06 36.6 10.5 39 213-254 74-112 (121)
166 1z6n_A Hypothetical protein PA 95.1 0.048 1.6E-06 45.0 7.0 37 129-174 53-96 (167)
167 3h79_A Thioredoxin-like protei 95.1 0.11 3.9E-06 39.4 8.7 41 213-255 82-123 (127)
168 3gnj_A Thioredoxin domain prot 95.1 0.25 8.5E-06 35.9 10.3 43 211-256 64-106 (111)
169 2dml_A Protein disulfide-isome 95.1 0.2 6.7E-06 37.9 9.9 41 211-253 77-117 (130)
170 2lst_A Thioredoxin; structural 93.6 0.0062 2.1E-07 46.6 0.0 40 213-254 68-110 (130)
171 3hz4_A Thioredoxin; NYSGXRC, P 94.4 0.35 1.2E-05 37.5 9.9 43 211-256 66-108 (140)
172 2ppt_A Thioredoxin-2; thiredox 94.2 0.47 1.6E-05 37.8 10.5 41 213-256 108-148 (155)
173 2dj1_A Protein disulfide-isome 94.1 0.33 1.1E-05 37.0 9.3 40 212-255 80-119 (140)
174 3t58_A Sulfhydryl oxidase 1; o 93.9 0.23 7.7E-06 48.3 9.6 104 93-254 4-121 (519)
175 3dxb_A Thioredoxin N-terminall 93.8 0.38 1.3E-05 40.6 9.7 78 129-256 29-114 (222)
176 2djj_A PDI, protein disulfide- 93.7 0.12 4.3E-06 38.4 5.9 34 220-255 78-112 (121)
177 2dbc_A PDCL2, unnamed protein 93.6 0.14 4.7E-06 39.9 6.1 77 130-259 30-120 (135)
178 1oaz_A Thioredoxin 1; immune s 93.1 0.16 5.6E-06 38.8 5.7 42 211-255 77-118 (123)
179 3aps_A DNAJ homolog subfamily 93.0 0.82 2.8E-05 33.9 9.5 42 213-256 65-109 (122)
180 3iv4_A Putative oxidoreductase 92.9 0.32 1.1E-05 38.1 7.2 78 130-252 24-108 (112)
181 2dj3_A Protein disulfide-isome 92.9 0.11 3.9E-06 39.4 4.5 77 129-255 24-113 (133)
182 1mek_A Protein disulfide isome 92.8 0.21 7.2E-06 36.6 5.8 39 214-255 72-112 (120)
183 3ira_A Conserved protein; meth 92.8 0.39 1.3E-05 40.0 8.0 24 220-245 101-124 (173)
184 1wou_A Thioredoxin -related pr 92.1 0.78 2.7E-05 34.7 8.5 82 130-255 24-120 (123)
185 1x5e_A Thioredoxin domain cont 92.0 1 3.4E-05 33.7 8.9 42 211-256 65-106 (126)
186 1v98_A Thioredoxin; oxidoreduc 92.0 1.9 6.5E-05 32.9 10.7 40 213-255 94-133 (140)
187 1wmj_A Thioredoxin H-type; str 91.6 0.045 1.5E-06 41.4 0.7 39 212-254 78-116 (130)
188 3q6o_A Sulfhydryl oxidase 1; p 90.5 1.6 5.4E-05 36.9 9.7 37 213-253 79-120 (244)
189 1a8l_A Protein disulfide oxido 90.2 1.3 4.5E-05 36.6 8.7 40 213-255 182-221 (226)
190 1fo5_A Thioredoxin; disulfide 89.8 0.51 1.7E-05 32.5 4.9 32 217-255 50-81 (85)
191 2yj7_A LPBCA thioredoxin; oxid 89.3 0.063 2.1E-06 38.5 0.0 40 213-255 63-102 (106)
192 3f8u_A Protein disulfide-isome 89.6 0.56 1.9E-05 43.9 6.4 76 130-255 370-456 (481)
193 1qgv_A Spliceosomal protein U5 89.4 2.3 7.7E-05 33.2 9.0 35 130-173 23-65 (142)
194 2dj0_A Thioredoxin-related tra 86.9 1.2 4.2E-05 34.0 5.8 38 213-251 71-112 (137)
195 2trc_P Phosducin, MEKA, PP33; 86.8 0.96 3.3E-05 38.5 5.6 79 129-258 119-211 (217)
196 3idv_A Protein disulfide-isome 85.2 9.1 0.00031 31.4 10.9 41 212-256 78-118 (241)
197 1nho_A Probable thioredoxin; b 84.9 1.6 5.3E-05 29.9 5.1 35 214-255 46-80 (85)
198 1a0r_P Phosducin, MEKA, PP33; 84.7 1.7 5.8E-05 38.0 6.3 36 129-173 132-174 (245)
199 2qsi_A Putative hydrogenase ex 84.4 8 0.00027 30.9 9.7 40 214-256 80-119 (137)
200 4h86_A Peroxiredoxin type-2; o 84.0 2.6 9E-05 36.1 7.0 85 146-244 89-180 (199)
201 2av4_A Thioredoxin-like protei 82.4 0.99 3.4E-05 37.5 3.5 36 130-174 41-84 (160)
202 1ilo_A Conserved hypothetical 81.9 9.1 0.00031 25.5 9.3 36 212-254 39-75 (77)
203 2hls_A Protein disulfide oxido 80.6 10 0.00036 32.2 9.7 37 213-256 186-222 (243)
204 3ed3_A Protein disulfide-isome 80.3 4.7 0.00016 35.6 7.6 22 213-237 81-102 (298)
205 2es7_A Q8ZP25_salty, putative 80.1 4 0.00014 32.2 6.3 39 214-255 82-120 (142)
206 2ywm_A Glutaredoxin-like prote 80.0 6.9 0.00024 32.3 8.1 37 213-255 179-215 (229)
207 3idv_A Protein disulfide-isome 79.6 23 0.00079 28.9 11.3 42 210-255 191-232 (241)
208 1eej_A Thiol:disulfide interch 78.8 5.6 0.00019 33.2 7.2 47 210-263 168-214 (216)
209 3qcp_A QSOX from trypanosoma b 76.6 3.8 0.00013 39.4 6.1 18 130-156 42-59 (470)
210 2dlx_A UBX domain-containing p 75.4 8.5 0.00029 30.9 7.1 38 213-253 91-129 (153)
211 2qgv_A Hydrogenase-1 operon pr 75.4 12 0.00041 30.0 7.9 40 214-256 82-121 (140)
212 3evi_A Phosducin-like protein 74.7 3 0.0001 32.0 4.0 34 131-173 24-64 (118)
213 3dml_A Putative uncharacterize 73.3 6.3 0.00022 30.5 5.6 29 225-254 76-104 (116)
214 3uem_A Protein disulfide-isome 71.3 11 0.00037 33.4 7.5 33 220-254 318-351 (361)
215 2b5e_A Protein disulfide-isome 68.5 27 0.00093 32.5 9.9 39 213-254 76-116 (504)
216 2r2j_A Thioredoxin domain-cont 65.1 41 0.0014 30.2 10.1 39 213-254 72-111 (382)
217 2b5e_A Protein disulfide-isome 63.7 9 0.00031 35.9 5.5 29 226-255 432-462 (504)
218 3apo_A DNAJ homolog subfamily 61.6 51 0.0017 32.5 10.8 40 213-256 499-538 (780)
219 2e7p_A Glutaredoxin; thioredox 58.1 4.3 0.00015 29.7 1.8 45 213-262 63-110 (116)
220 3f8u_A Protein disulfide-isome 56.7 85 0.0029 28.7 10.9 41 212-255 64-104 (481)
221 1a8l_A Protein disulfide oxido 50.6 85 0.0029 25.2 8.9 38 213-255 68-108 (226)
222 1kcq_A Gelsolin, brevin, ADF, 50.5 17 0.00059 27.0 4.1 39 222-261 24-63 (104)
223 3apo_A DNAJ homolog subfamily 50.1 28 0.00095 34.4 6.7 40 213-255 719-762 (780)
224 1hyu_A AHPF, alkyl hydroperoxi 49.2 84 0.0029 29.6 9.7 37 211-254 158-194 (521)
225 2qhk_A Methyl-accepting chemot 48.3 7.1 0.00024 31.4 1.7 23 218-242 58-80 (174)
226 3ga4_A Dolichyl-diphosphooligo 44.6 17 0.00057 30.2 3.5 27 149-175 54-93 (178)
227 1svq_A Severin; actin-binding; 43.5 29 0.001 26.3 4.5 41 219-261 31-73 (114)
228 3lic_A Sensor protein; PDC fol 43.4 16 0.00055 30.4 3.3 26 213-241 170-195 (274)
229 4hi4_A Aerotaxis transducer AE 42.4 13 0.00044 26.8 2.2 18 226-243 15-32 (121)
230 1wjk_A C330018D20RIK protein; 39.1 63 0.0022 23.2 5.6 25 148-172 24-52 (100)
231 3by9_A Sensor protein; histidi 39.1 13 0.00046 30.6 2.0 27 213-242 153-179 (260)
232 4exo_A Methyl-accepting chemot 38.2 13 0.00044 29.1 1.7 23 217-241 50-72 (146)
233 3c8c_A Methyl-accepting chemot 37.7 19 0.00066 28.8 2.7 30 213-242 145-175 (240)
234 2k8s_A Thioredoxin; dimer, str 36.9 93 0.0032 20.8 6.5 32 214-251 46-77 (80)
235 3a0s_A Sensor protein; PAS-fol 36.4 20 0.00069 22.8 2.3 14 229-242 5-18 (96)
236 4dah_A Sporulation kinase D; a 34.5 18 0.00062 29.2 2.1 18 227-244 163-180 (217)
237 3b33_A Sensor protein; structu 32.3 23 0.00078 24.5 2.1 15 228-242 19-33 (115)
238 3hcy_A Putative two-component 32.0 59 0.002 24.0 4.6 34 213-249 13-46 (151)
239 2xz8_A Peptidoglycan-recogniti 31.8 17 0.00058 29.5 1.4 21 217-239 63-83 (150)
240 2qkp_A Uncharacterized protein 31.6 24 0.00082 27.6 2.3 22 223-244 26-47 (151)
241 3lif_A Putative diguanylate cy 31.5 27 0.00094 28.7 2.8 29 213-241 152-181 (254)
242 1v58_A Thiol:disulfide interch 31.1 68 0.0023 27.0 5.3 41 212-255 188-228 (241)
243 2w3g_A DOSS, two component sen 31.0 54 0.0018 23.7 4.1 37 213-252 16-52 (153)
244 3li9_A Hypothetical sensory tr 30.3 35 0.0012 28.7 3.3 29 213-241 174-203 (291)
245 3nul_A Profilin I; cytoskeleto 29.3 56 0.0019 25.4 4.1 34 225-259 18-54 (130)
246 2f2l_A Peptidoglycan-recogniti 28.4 20 0.00068 29.3 1.3 20 218-239 57-76 (167)
247 2lvl_A SPAI; lantibiotic SELF- 28.4 18 0.00062 27.7 0.9 16 225-241 54-69 (128)
248 2vlg_A Sporulation kinase A; h 27.1 36 0.0012 25.0 2.5 21 223-243 6-26 (111)
249 3lib_A Hypothetical sensory tr 26.1 23 0.0008 29.8 1.4 18 225-242 186-203 (290)
250 2c0g_A ERP29 homolog, windbeut 25.3 3.2E+02 0.011 23.3 9.9 37 130-173 33-76 (248)
251 3fg8_A Uncharacterized protein 23.0 62 0.0021 22.8 3.1 17 227-243 23-39 (118)
252 3q6o_A Sulfhydryl oxidase 1; p 23.0 1.7E+02 0.0059 23.9 6.4 48 212-261 194-241 (244)
253 3lid_A Putative sensory BOX/gg 23.0 46 0.0016 29.0 2.7 29 213-241 175-203 (295)
254 3elq_A Arylsulfate sulfotransf 22.9 39 0.0013 33.2 2.4 19 226-244 174-192 (571)
255 3gyk_A 27KDA outer membrane pr 22.4 93 0.0032 24.0 4.3 36 213-256 134-169 (175)
256 1acf_A Profilin I; protein bin 22.2 91 0.0031 23.9 4.1 34 225-259 15-50 (125)
257 3by8_A Sensor protein DCUS; hi 22.2 51 0.0018 25.3 2.6 26 213-244 48-73 (142)
258 3bqa_A Sensor protein PHOQ; hi 21.6 60 0.0021 26.2 2.9 26 217-244 34-59 (148)
259 1ll8_A PAS kinase; PAS domain, 21.3 50 0.0017 22.8 2.2 15 228-242 10-25 (114)
260 1sk4_A Peptidoglycan recogniti 21.0 31 0.0011 27.8 1.1 20 218-239 56-75 (163)
261 2gj3_A Nitrogen fixation regul 20.9 49 0.0017 23.2 2.1 15 228-242 17-31 (120)
262 1yck_A Peptidoglycan recogniti 20.3 43 0.0015 27.3 1.9 20 218-239 66-85 (175)
263 3fc7_A HTR-like protein, senso 20.3 74 0.0025 21.7 3.0 19 225-243 28-46 (125)
264 2w0n_A Sensor protein DCUS; si 20.1 25 0.00085 23.9 0.3 15 228-242 27-41 (118)
265 2fgx_A Putative thioredoxin; N 20.1 37 0.0013 25.6 1.3 36 213-254 70-105 (107)
No 1
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=99.21 E-value=2.7e-10 Score=94.73 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=104.0
Q ss_pred CCeeeeccCccccccccccCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH
Q 024610 79 GGKIATANKIIIPALAAVKFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE 156 (265)
Q Consensus 79 ~GK~f~ap~~l~ka~~AlyFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e 156 (265)
-++.+..|..+-+...+..+|+|.+.+++| +++++.+ ++||+.||.++ ++||.+|..
T Consensus 17 ~~~~~~~~~~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~ 75 (176)
T 3kh7_A 17 RGSHMLDPSELPSALIGKPFPAFDLPSVQDPARRLTEAD------------LKGKPALVNVW---------GTWCPSCRV 75 (176)
T ss_dssp CCCCCCCGGGSTTTTTTSBCCCCEEEBSSCTTSEEEGGG------------GCSSCEEEEEE---------CTTCHHHHH
T ss_pred cccccCCcccccccccCCcCCCcEecccCCCCceecHHH------------hCCCEEEEEEE---------CCcCHHHHH
Confidence 355667788888888899999999999999 7776542 35899888665 899999873
Q ss_pred ------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEE
Q 024610 157 ------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIF 230 (265)
Q Consensus 157 ------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVy 230 (265)
.+.+. ++++|.|+++++.- . ++.+ +.+ .+.. ...+ ..+....+.+.+|+.. ++.+|
T Consensus 76 ~~~~l~~l~~~-~v~vv~vs~~d~~~--~--~~~~----~~~-~~~~----~~~~--~~d~~~~~~~~~~v~~--~P~~~ 137 (176)
T 3kh7_A 76 EHPELTRLAEQ-GVVIYGINYKDDNA--A--AIKW----LNE-LHNP----YLLS--ISDADGTLGLDLGVYG--APETY 137 (176)
T ss_dssp HHHHHHHHHHT-TCEEEEEEESCCHH--H--HHHH----HHH-TTCC----CSEE--EEETTCHHHHHHTCCS--SCEEE
T ss_pred HHHHHHHHHHC-CCEEEEEeCCCCHH--H--HHHH----HHH-cCCC----CceE--EECCcchHHHHcCCCC--CCeEE
Confidence 33334 79999999876432 1 2232 222 2211 1111 2355678899999986 89999
Q ss_pred EEeCCCcEEEcccCCCCHHHHH-HHHHHHHhhhcC
Q 024610 231 LLDKFGRIRWQGFGMATPEELS-SLLSCTSLLLEG 264 (265)
Q Consensus 231 LVD~~grIRWagsG~at~~E~e-~L~k~~~~Ll~e 264 (265)
|||++|+|+|...|..++++++ .|.+.++.|..+
T Consensus 138 lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~~~ 172 (176)
T 3kh7_A 138 LIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLLDE 172 (176)
T ss_dssp EECTTCBEEEEEESCCCHHHHHHHTHHHHHHHHC-
T ss_pred EECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998888765 444555655543
No 2
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=99.10 E-value=3.5e-10 Score=91.82 Aligned_cols=134 Identities=10% Similarity=0.023 Sum_probs=93.9
Q ss_pred cccccCCCce--eeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610 93 LAAVKFPDLD--VSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD 160 (265)
Q Consensus 93 ~~AlyFPnl~--~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~ 160 (265)
..+...|+|. +.+.+|+++++.+ ++||++||.+| + .+||.+|.. .+.
T Consensus 8 ~~G~~~P~f~~~l~~~~G~~~~l~~------------~~gk~~vl~F~--~------~~~c~~C~~~~~~l~~~~~~~~- 66 (163)
T 3gkn_A 8 VLELPAATFDLPLSLSGGTQTTLRA------------HAGHWLVIYFY--P------KDSTPGATTEGLDFNALLPEFD- 66 (163)
T ss_dssp CCCCCGGGGGCCEECSTTCEECSGG------------GTTSCEEEEEC--S------CTTSHHHHHHHHHHHHHHHHHH-
T ss_pred ccCCcCCCccccccCCCCCEEEHHH------------hCCCcEEEEEe--C------CCCCCcHHHHHHHHHHHHHHHH-
Confidence 3456789999 9999999997643 36898777554 1 389998863 222
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc----------ccEEE
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----------TGYIF 230 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----------vGYVy 230 (265)
..++++|.|++++... ++.+ ... .+.+ ..+ ..+....+.+++|+.... ++.+|
T Consensus 67 ~~~~~vv~vs~d~~~~-----~~~~-~~~--~~~~--------~~~-~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~ 129 (163)
T 3gkn_A 67 KAGAKILGVSRDSVKS-----HDNF-CAK--QGFA--------FPL-VSDGDEALCRAFDVIKEKNMYGKQVLGIERSTF 129 (163)
T ss_dssp HTTCEEEEEESSCHHH-----HHHH-HHH--HCCS--------SCE-EECTTCHHHHHTTCEEEEEETTEEEEEECCEEE
T ss_pred HCCCEEEEEeCCCHHH-----HHHH-HHH--hCCC--------ceE-EECCcHHHHHHhCCccccccccccccCcceEEE
Confidence 2479999999974211 2332 111 1222 122 235667888999987522 78999
Q ss_pred EEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 231 LLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 231 LVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
|||++|+|+|...|..+++..+.+.+.++.|.++
T Consensus 130 lid~~G~i~~~~~~~~~~~~~~~il~~l~~l~~~ 163 (163)
T 3gkn_A 130 LLSPEGQVVQAWRKVKVAGHADAVLAALKAHAKQ 163 (163)
T ss_dssp EECTTSCEEEEECSCCSTTHHHHHHHHHHHHCC-
T ss_pred EECCCCeEEEEEcCCCcccCHHHHHHHHHHHhcC
Confidence 9999999999998888888889999999888764
No 3
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=99.06 E-value=3.5e-09 Score=85.66 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=84.2
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
..+..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .
T Consensus 10 ~~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~-~ 67 (152)
T 2lrt_A 10 IKEASIIDIQLKDLKGNTRSLTD------------LKGKVVLIDFT---------VYNNAMSAAHNLALRELYNKYAS-Q 67 (152)
T ss_dssp SCTTCSCCCCEEBTTSCEECTTT------------GGGSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHGG-G
T ss_pred ccCCCCCCeEEEcCCCCEEeHHH------------hCCCEEEEEEE---------cCCChhhHHHHHHHHHHHHHhcc-C
Confidence 34567999999999999987652 35899888665 789999873 2222 2
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHH---HHHHhcccCCcccEEEEEeCCCcEE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYY---FRKELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~---iRe~Lgi~N~~vGYVyLVD~~grIR 239 (265)
++++|.|++++..- . ++.+ + ...+. .+ ..+.... +.+.+|+.. ++.+||||++|+|+
T Consensus 68 ~~~vv~i~~d~~~~--~--~~~~----~-~~~~~--------~~-~~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~ 127 (152)
T 2lrt_A 68 GFEIYQISLDGDEH--F--WKTS----A-DNLPW--------VC-VRDANGAYSSYISLYNVTN--LPSVFLVNRNNELS 127 (152)
T ss_dssp TEEEEEEECSCCHH--H--HHHH----H-TTCSS--------EE-EECSSGGGCHHHHHHTCCS--CSEEEEEETTTEEE
T ss_pred CeEEEEEEccCCHH--H--HHHH----H-hCCCc--------eE-EECCCCcchHHHHHcCccc--CceEEEECCCCeEE
Confidence 69999999987531 1 2222 1 22332 11 1344443 889999985 99999999999999
Q ss_pred EcccCCCCHHHHH
Q 024610 240 WQGFGMATPEELS 252 (265)
Q Consensus 240 WagsG~at~~E~e 252 (265)
+...|..+.++..
T Consensus 128 ~~~~g~~~~e~~~ 140 (152)
T 2lrt_A 128 ARGENIKDLDEAI 140 (152)
T ss_dssp EETTTCSCHHHHH
T ss_pred EecCCHHHHHHHH
Confidence 9999998776654
No 4
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=3.9e-09 Score=84.43 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=86.4
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch--hHH----------hhcc
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP--FFE----------AFSD 160 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p--~~e----------~~~~ 160 (265)
..+..+|+|.+.+++|+++++.. ..++||++||.+| ++||.| |.. .+..
T Consensus 6 ~~G~~~p~f~l~~~~g~~~~l~~----------~~~~gk~vll~F~---------a~~C~~v~C~~~~~~l~~l~~~~~~ 66 (150)
T 3fw2_A 6 EIGKYAPFFSLPNAKGEKITRSS----------DAFKQKSLLINFW---------ASWNDSISQKQSNSELREIYKKYKK 66 (150)
T ss_dssp STTSBCCCCCEEBTTCCEECTTS----------TTTTTSEEEEEEE---------CTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCcCCccEeECCCCCEEecch----------hhhCCCEEEEEEE---------eCCCCchHHHHHHHHHHHHHHHhcc
Confidence 34567999999999999997641 0236899988666 899999 973 2324
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCC
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFG 236 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~g 236 (265)
.+++++|.|+++++.- . ++.+ +++ ++++ .. + .+. ...+.+.+|+.. ++.+||||++|
T Consensus 67 ~~~~~~v~v~~d~~~~--~--~~~~----~~~~~~~~------~~-~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G 127 (150)
T 3fw2_A 67 NKYIGMLGISLDVDKQ--Q--WKDA----IKRDTLDW------EQ-V--CDFGGLNSEVAKQYSIYK--IPANILLSSDG 127 (150)
T ss_dssp CSSEEEEEEECCSCHH--H--HHHH----HHHTTCCS------EE-E--CCSCGGGCHHHHHTTCCS--SSEEEEECTTS
T ss_pred CCCeEEEEEEcCCCHH--H--HHHH----HHHhCCCc------eE-E--EcCcccchHHHHHcCCCc--cCeEEEECCCC
Confidence 4679999999987521 1 2332 222 2222 11 1 233 467899999984 99999999999
Q ss_pred cEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 237 RIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 237 rIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
+|++... ++++++ +.++.|++
T Consensus 128 ~i~~~~~---~~~~l~---~~l~~ll~ 148 (150)
T 3fw2_A 128 KILAKNL---RGEELK---KKIENIVE 148 (150)
T ss_dssp BEEEESC---CHHHHH---HHHHHHHH
T ss_pred EEEEccC---CHHHHH---HHHHHHHh
Confidence 9999985 555544 34444443
No 5
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.03 E-value=4e-09 Score=85.93 Aligned_cols=131 Identities=18% Similarity=0.089 Sum_probs=91.1
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCce-EEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKV-SLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKv-SIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
+..+|+|.+.+++|+++++.+ ++||+ .||.+| . ++||.+|.. .+. ..+
T Consensus 5 G~~~P~f~l~~~~G~~~~l~~------------~~gk~~vvl~F~-~-------a~~C~~C~~~~~~l~~~~~~~~-~~~ 63 (161)
T 3drn_A 5 GDKAPLFEGIADNGEKISLSD------------YIGKHNIVLYFY-P-------KDDTPGSTREASAFRDNWDLLK-DYD 63 (161)
T ss_dssp TSBCCCCEEEETTSCEEEGGG------------TTTTSEEEEEEC-S-------CTTCHHHHHHHHHHHHTHHHHH-TTC
T ss_pred CCcCCCeEeecCCCCEEEHHH------------hcCCCCEEEEEE-c-------CCCCCchHHHHHHHHHHHHHHH-HcC
Confidence 456899999999999998653 35887 666433 2 789998863 222 236
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC--CcccEEEEEeCCCcEEEc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN--LLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N--~~vGYVyLVD~~grIRWa 241 (265)
+++|.|++++.. . ++.+ +++ .+. ...+ ..+....+.+.+|+.. ..++.+||||++|+|+|.
T Consensus 64 v~vv~vs~d~~~---~--~~~~----~~~-~~~------~~~~-~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 64 VVVIGVSSDDIN---S--HKRF----KEK-YKL------PFIL-VSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHI 126 (161)
T ss_dssp EEEEEEESCCHH---H--HHHH----HHH-TTC------CSEE-EECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred CEEEEEeCCCHH---H--HHHH----HHH-hCC------CceE-EECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence 999999997521 1 2333 111 121 1222 2466678899999973 337899999999999999
Q ss_pred ccC-CCCHHHHHHHHHHHHhhhc
Q 024610 242 GFG-MATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 242 gsG-~at~~E~e~L~k~~~~Ll~ 263 (265)
..| ..++++++.+.+.++.|..
T Consensus 127 ~~g~~~~~~~~~~il~~l~~l~~ 149 (161)
T 3drn_A 127 YNSQMNPANHVNEALKALKQIKE 149 (161)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHH
T ss_pred EecCCCCCcCHHHHHHHHHHhhh
Confidence 999 5667788888888887754
No 6
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=99.02 E-value=1.5e-09 Score=89.00 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=79.5
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhhc---------cCCCee
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAFS---------DSKNVH 165 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~~---------~~~~vq 165 (265)
+...|+|++.+.+|+++++.+ ++||+.||.+| + ++||.+|..... ...+++
T Consensus 7 G~~aPdF~l~~~~G~~~~l~d------------~~Gk~vvl~f~-~-------~~~c~~C~~e~~~l~~~~~~~~~~~~~ 66 (157)
T 4g2e_A 7 GELAPDFELPDTELKKVKLSA------------LKGKVVVLAFY-P-------AAFTQVCTKEMCTFRDSMAKFNQVNAV 66 (157)
T ss_dssp TSBCCCCEEEBTTSCEEEGGG------------GTTSCEEEEEC-S-------CTTCCC------CCSCGGGGGGGCSSE
T ss_pred CCCCcCeEeECCCCCEEeHHH------------HCCCeEEEEec-C-------CCCCCccccchhhcccccccccccCce
Confidence 456899999999999998653 36898777554 2 799999874221 224799
Q ss_pred EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEEEEeCCC
Q 024610 166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIFLLDKFG 236 (265)
Q Consensus 166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVyLVD~~g 236 (265)
+|.||.++... ++.+ .+..+- ...+ ..+....+-+++|+.... .+.+||||++|
T Consensus 67 ~v~vs~d~~~~-----~~~~-----~~~~~~------~~p~-l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G 129 (157)
T 4g2e_A 67 VLGISVDPPFS-----NKAF-----KEHNKL------NFTI-LSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEG 129 (157)
T ss_dssp EEEEESSCHHH-----HHHH-----HHHTTC------CSEE-EECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTS
T ss_pred EeeecccchhH-----HHHH-----HHHcCC------cEEE-EEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCC
Confidence 99999875321 2332 111111 1222 246667788899885321 34589999999
Q ss_pred cEEEcccCCCCH--HHHHHHHHHHHhh
Q 024610 237 RIRWQGFGMATP--EELSSLLSCTSLL 261 (265)
Q Consensus 237 rIRWagsG~at~--~E~e~L~k~~~~L 261 (265)
+|||+.-|.... ...+.+.+.++.|
T Consensus 130 ~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 130 KVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp BEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 999987654222 1234445555544
No 7
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=99.00 E-value=7.3e-09 Score=81.47 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=85.9
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
..+..+|++.+.+++|+++++... .++||+.||.++ ++||.+|.. .+....
T Consensus 6 ~~g~~~p~~~l~~~~g~~~~l~~~----------~~~gk~vll~F~---------~~~C~~C~~~~~~l~~l~~~~~~~~ 66 (148)
T 3fkf_A 6 TVGKSAPYFSLPNEKGEKLSRSAE----------RFRNRYLLLNFW---------ASWCDPQPEANAELKRLNKEYKKNK 66 (148)
T ss_dssp CTTSBCCCCCEEBTTSCEECTTST----------TTTTSEEEEEEE---------CGGGCCCHHHHHHHHHHHHHTTTCT
T ss_pred cCCCcCCCeEeeCCCCCEEecccc----------ccCCcEEEEEEE---------CCCCHHHHHHhHHHHHHHHHhcCCC
Confidence 345679999999999999976510 136899988666 899998862 222345
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRI 238 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grI 238 (265)
+++++.|++++..- . ++.+ +++ +.++ . .+ .+. ...+.+.+|+.. ++.+||+|++|+|
T Consensus 67 ~~~~v~v~~d~~~~--~--~~~~----~~~~~~~~------~-~~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i 127 (148)
T 3fkf_A 67 NFAMLGISLDIDRE--A--WETA----IKKDTLSW------D-QV--CDFTGLSSETAKQYAILT--LPTNILLSPTGKI 127 (148)
T ss_dssp TEEEEEEECCSCHH--H--HHHH----HHHTTCCS------E-EE--CCSCGGGCHHHHHTTCCS--SSEEEEECTTSBE
T ss_pred CeEEEEEECCCCHH--H--HHHH----HHHcCCCc------e-EE--EccCCcchHHHHhcCCCC--cCEEEEECCCCeE
Confidence 69999999987421 1 2222 222 2222 1 11 233 567889999985 9999999999999
Q ss_pred EEcccCCCCHHHHHHHHHHHHhhhcCC
Q 024610 239 RWQGFGMATPEELSSLLSCTSLLLEGE 265 (265)
Q Consensus 239 RWagsG~at~~E~e~L~k~~~~Ll~e~ 265 (265)
++... ++++ |.+.++.|+++|
T Consensus 128 ~~~~~---~~~~---l~~~l~~ll~~e 148 (148)
T 3fkf_A 128 LARDI---QGEA---LTGKLKELLKTE 148 (148)
T ss_dssp EEESC---CHHH---HHHHHHHHC---
T ss_pred EEecC---CHHH---HHHHHHHHHccC
Confidence 99987 4444 555566666654
No 8
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.99 E-value=6.8e-09 Score=81.65 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=86.6
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
..+..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .
T Consensus 6 ~~G~~~p~~~l~~~~g~~~~l~~------------~~gk~vll~f~---------~~~C~~C~~~~~~l~~l~~~~~~-~ 63 (148)
T 3hcz_A 6 LLGKKAPNLYMTDTTGTYRYLYD------------VQAKYTILFFW---------DSQCGHCQQETPKLYDWWLKNRA-K 63 (148)
T ss_dssp CTTSBCCCCCCBCTTSCBCCGGG------------CCCSEEEEEEE---------CGGGCTTCSHHHHHHHHHHHHGG-G
T ss_pred CCCCcCCceEEecCCCCEEEhHH------------cCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHhcc-C
Confidence 34667999999999999987653 36899888665 899998762 2222 2
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHH--HHHHhcccCCcccEEEEEeCCCcEE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYY--FRKELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~--iRe~Lgi~N~~vGYVyLVD~~grIR 239 (265)
++++|.|+++++.- . ++.+ +++ +.+. ..+ ..+.... +.+.+|+.. ++.+||+|++|+|+
T Consensus 64 ~~~~v~v~~d~~~~--~--~~~~----~~~~~~~~-------~~~-~~d~~~~~~~~~~~~i~~--~P~~~lid~~G~i~ 125 (148)
T 3hcz_A 64 GIQVYAANIERKDE--E--WLKF----IRSKKIGG-------WLN-VRDSKNHTDFKITYDIYA--TPVLYVLDKNKVII 125 (148)
T ss_dssp TEEEEEEECCSSSH--H--HHHH----HHHHTCTT-------SEE-EECTTCCCCHHHHHCCCS--SCEEEEECTTCBEE
T ss_pred CEEEEEEEecCCHH--H--HHHH----HHHcCCCC-------ceE-EeccccchhHHHhcCcCC--CCEEEEECCCCcEE
Confidence 69999999986432 1 2332 122 2221 111 1344444 889999985 99999999999999
Q ss_pred EcccCCCCHHHHHHHHHHHHhhhc
Q 024610 240 WQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 240 WagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
+...|. ++++.+.+.+..+++
T Consensus 126 ~~~~g~---~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 126 AKRIGY---ENLDDFLVQYEKSLK 146 (148)
T ss_dssp EESCCG---GGHHHHHHHHHHHHH
T ss_pred EecCCH---HHHHHHHHHHHHHhc
Confidence 999887 555555555555543
No 9
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.99 E-value=5.2e-09 Score=84.56 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=90.3
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-ccC--CC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDS--KN 163 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~--~~ 163 (265)
..+..+|++.+.+++|+++++.+ ++||+.||.++ .+||.+|.. .+ ... .+
T Consensus 16 ~~G~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------~~~C~~C~~~~~~l~~~~~~~~~~~ 74 (158)
T 3hdc_A 16 RTGALAPNFKLPTLSGENKSLAQ------------YRGKIVLVNFW---------ASWCPYCRDEMPSMDRLVKSFPKGD 74 (158)
T ss_dssp CTTSBCCCCEEECTTSCEEESGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHSSTTS
T ss_pred CCCCcCCCceeEcCCCCEEehHH------------hCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHcccCC
Confidence 34567899999999999998653 36898888666 899998863 11 222 47
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
+++|.|++++.+. .+ + ++ .+. ...+ ..+....+.+.+|+.. ++.+||||++|+|++...
T Consensus 75 ~~~v~v~~d~~~~-~~--~--------~~-~~~------~~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~ 133 (158)
T 3hdc_A 75 LVVLAVNVEKRFP-EK--Y--------RR-APV------SFNF-LSDATGQVQQRYGANR--LPDTFIVDRKGIIRQRVT 133 (158)
T ss_dssp EEEEEEECSSSCC-GG--G--------GG-CCC------SCEE-EECTTSHHHHHTTCCS--SSEEEEECTTSBEEEEEE
T ss_pred eEEEEEeCCHHHH-HH--H--------HH-cCC------CceE-EECchHHHHHHhCCCC--cceEEEEcCCCCEEEEEe
Confidence 9999999988322 22 1 11 111 1112 2466678999999985 999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 024610 244 GMATPEELSSLLSCTS 259 (265)
Q Consensus 244 G~at~~E~e~L~k~~~ 259 (265)
|+.+.++-+.+.+-.+
T Consensus 134 G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 134 GGIEWDAPKVVSYLKS 149 (158)
T ss_dssp SCCCTTSHHHHHHHHT
T ss_pred CCCccchHHHHHHHHh
Confidence 9988888777765443
No 10
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.97 E-value=1e-08 Score=80.69 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=82.1
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh---hcc---------CC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA---FSD---------SK 162 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~---------~~ 162 (265)
+...|++.+.+++|+++++.+ ++||+.||.++ ++||.+|... +.+ ..
T Consensus 4 G~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~~~~~l~~~~~l~~~~~~~ 62 (142)
T 3ewl_A 4 GMKAADFTYVTVHGDNSRMSR------------LKAQYTMLFFY---------DPDCSNCRKFEKLFAEIPAFVEMVENG 62 (142)
T ss_dssp TSBCCCCEEECTTCCEEEGGG------------CCCSEEEEEEC---------CSSCHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCcCCCCEEECCCCCEEEhhh------------cCCCEEEEEEE---------CCCCccHHHHHHHHHHhHHHHHHhccC
Confidence 457899999999999998653 35899888665 8999998743 111 24
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHH--HhcccCCcccEEEEEeCCCcEEE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRK--ELKILNLLTGYIFLLDKFGRIRW 240 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe--~Lgi~N~~vGYVyLVD~~grIRW 240 (265)
++++|.|+++++.- . ++.+ .+..+. ...+ ..+....+.. .+|+.- ++.+||||++|+|++
T Consensus 63 ~~~~v~v~~d~~~~--~--~~~~-----~~~~~~------~~~~-~~d~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~ 124 (142)
T 3ewl_A 63 TLRVLAIYPDENRE--E--WATK-----AVYMPQ------GWIV-GWNKAGDIRTRQLYDIRA--TPTIYLLDGRKRVIL 124 (142)
T ss_dssp SEEEEEEECSSCHH--H--HHHH-----HTTSCT------TCEE-EECTTCHHHHTTCSCCCS--SSEEEEECTTCBEEE
T ss_pred CeEEEEEEecCCHH--H--HHHH-----HHHcCC------Ccce-eeCCccchhhHHHcCCCC--CCeEEEECCCCCEEe
Confidence 69999999986432 1 2222 222221 1122 2455555655 788774 999999999999999
Q ss_pred cccCCCCHHHHHHHHH
Q 024610 241 QGFGMATPEELSSLLS 256 (265)
Q Consensus 241 agsG~at~~E~e~L~k 256 (265)
+..++++++.+.+
T Consensus 125 ---~~~~~~~l~~~l~ 137 (142)
T 3ewl_A 125 ---KDTSMEQLIDYLA 137 (142)
T ss_dssp ---CSCCHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHH
Confidence 4467787776554
No 11
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=98.96 E-value=7.7e-09 Score=85.05 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=90.9
Q ss_pred CCeeeeccCccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-
Q 024610 79 GGKIATANKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA- 157 (265)
Q Consensus 79 ~GK~f~ap~~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~- 157 (265)
+|+.........+ ....+|++.+.+.+|+++++.+ ++||+.||.+| . .+||.+|...
T Consensus 10 ~~~~~~~~~~~l~--~g~~~P~f~l~~~~G~~~~l~~------------~~gk~vvl~f~--~------~~~C~~C~~~~ 67 (171)
T 2yzh_A 10 KGNPVTLVGPELK--VGDRAPEAVVVTKDLQEKIVGG------------AKDVVQVIITV--P------SLDTPVCETET 67 (171)
T ss_dssp TTEEEEBCSCCCC--TTSBCCCEEEEETTSCEEEESS------------CCSSEEEEEEC--S------CTTSHHHHHHH
T ss_pred CCceEeecCCcCC--CCCcCCceEEECCCCCEeeHHH------------hCCCeEEEEEE--C------CCCCCchHHHH
Confidence 5555544433332 3446899999999999998653 36898777544 1 6899988631
Q ss_pred ------hccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCC------
Q 024610 158 ------FSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNL------ 224 (265)
Q Consensus 158 ------~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~------ 224 (265)
.....++++|-|++++.-. ++.+ .+..+. ....++ .+ ....+ +++|+...
T Consensus 68 ~~l~~~~~~~~~v~vv~Is~d~~~~-----~~~~-----~~~~~~-----~~~~~l-~D~~~~~~-~~~gv~~~~~~~~g 130 (171)
T 2yzh_A 68 KKFNEIMAGMEGVDVTVVSMDLPFA-----QKRF-----CESFNI-----QNVTVA-SDFRYRDM-EKYGVLIGEGALKG 130 (171)
T ss_dssp HHHHHHTTTCTTEEEEEEESSCHHH-----HHHH-----HHHTTC-----CSSEEE-ECTTTCGG-GGGTCBBCSSTTTT
T ss_pred HHHHHHHHHcCCceEEEEeCCCHHH-----HHHH-----HHHcCC-----CCeEEe-ecCccCcH-HHhCCEecccccCC
Confidence 2222689999999875321 2332 111221 012222 35 45678 99998743
Q ss_pred -cccEEEEEeCCCcEEEcccCC--CCHHHHHHHHHHHHhhh
Q 024610 225 -LTGYIFLLDKFGRIRWQGFGM--ATPEELSSLLSCTSLLL 262 (265)
Q Consensus 225 -~vGYVyLVD~~grIRWagsG~--at~~E~e~L~k~~~~Ll 262 (265)
.++.+||||++|+|++...|. ....+.+.+.+.++.||
T Consensus 131 ~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 131 ILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp SBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred ceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 368999999999999998763 23334555666666664
No 12
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.95 E-value=1.2e-08 Score=81.35 Aligned_cols=122 Identities=13% Similarity=0.170 Sum_probs=85.6
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CCCeeE
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SKNVHL 166 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~~vqi 166 (265)
..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|... + .. ..++++
T Consensus 4 ~~~p~~~l~~~~g~~~~l~~------------~~gk~vlv~F~---------~~~C~~C~~~~~~l~~~~~~~~~~~v~v 62 (151)
T 2f9s_A 4 SDAPNFVLEDTNGKRIELSD------------LKGKGVFLNFW---------GTWCEPCKKEFPYMANQYKHFKSQGVEI 62 (151)
T ss_dssp EECCCCEEECTTCCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred CcCCcceeEcCCCCEEEHHH------------cCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhccCCeEE
Confidence 45899999999999998653 35899888665 8899988631 1 11 136999
Q ss_pred EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a 246 (265)
+.|+++++.- . ++.+ ... .+++. .+ ..+....+.+.+|+.. ++.+||||++|+|++...|..
T Consensus 63 v~v~~d~~~~--~--~~~~-~~~--~~~~~--------~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~G~~ 124 (151)
T 2f9s_A 63 VAVNVGESKI--A--VHNF-MKS--YGVNF--------PV-VLDTDRQVLDAYDVSP--LPTTFLINPEGKVVKVVTGTM 124 (151)
T ss_dssp EEEEESCCHH--H--HHHH-HHH--HTCCS--------CE-EEETTSHHHHHTTCCS--SCEEEEECTTSEEEEEEESCC
T ss_pred EEEECCCCHH--H--HHHH-HHH--cCCCc--------eE-EECCchHHHHhcCCCC--CCeEEEECCCCcEEEEEeCCC
Confidence 9999976431 1 2332 111 12221 12 1355677889999975 999999999999999999998
Q ss_pred CHHHHHHHHH
Q 024610 247 TPEELSSLLS 256 (265)
Q Consensus 247 t~~E~e~L~k 256 (265)
++++++.+.+
T Consensus 125 ~~~~l~~~l~ 134 (151)
T 2f9s_A 125 TESMIHDYMN 134 (151)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8877665443
No 13
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=98.95 E-value=9.2e-09 Score=84.10 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=84.3
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeE
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHL 166 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqi 166 (265)
....+|++.+.+.+|+++++.+ ++||+.||.+| + .+||.+|... .....++++
T Consensus 18 ~G~~~P~f~l~~~~G~~v~l~~------------~~gk~vvl~F~--~------~~~c~~C~~~~~~l~~~~~~~~~v~v 77 (163)
T 1psq_A 18 VGDKALDFSLTTTDLSKKSLAD------------FDGKKKVLSVV--P------SIDTGICSTQTRRFNEELAGLDNTVV 77 (163)
T ss_dssp TTSBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEC--S------CTTSHHHHHHHHHHHHHTTTCTTEEE
T ss_pred CCCCCCCEEEEcCCCcEeeHHH------------hCCCEEEEEEE--C------CCCCCccHHHHHHHHHHHHHcCCcEE
Confidence 3456899999999999998653 36898777444 2 5899988631 222268999
Q ss_pred EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCC----cccEEEEEeCCCcEEEc
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNL----LTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~----~vGYVyLVD~~grIRWa 241 (265)
|.|++++... ++.+ ... .+++ ...+ ..+ ....+.+++|+... .++.+||||++|+||+.
T Consensus 78 v~is~d~~~~-----~~~~-~~~--~~~~-------~~~~-l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~ 141 (163)
T 1psq_A 78 LTVSMDLPFA-----QKRW-CGA--EGLD-------NAIM-LSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYV 141 (163)
T ss_dssp EEEESSCHHH-----HHHH-HHH--HTCT-------TSEE-EECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEE
T ss_pred EEEECCCHHH-----HHHH-HHh--cCCC-------CcEE-ecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEE
Confidence 9999875321 2332 111 1221 1122 135 45678899998742 25799999999999999
Q ss_pred ccCCCC--HHHHHHHHHHHHh
Q 024610 242 GFGMAT--PEELSSLLSCTSL 260 (265)
Q Consensus 242 gsG~at--~~E~e~L~k~~~~ 260 (265)
..|... ..+.+.+.+.++.
T Consensus 142 ~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 142 EYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp EECSBTTSCCCHHHHHHHHHH
T ss_pred EecCCcCCCCCHHHHHHHHHh
Confidence 987522 2233445555443
No 14
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=98.95 E-value=2.4e-09 Score=87.30 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=87.0
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHHh-------hccCCCee
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFEA-------FSDSKNVH 165 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e~-------~~~~~~vq 165 (265)
.....|++.+.+++|+++++.+ ++||+.||.+| .+| |.+|... ....++++
T Consensus 20 ~G~~~p~f~l~~~~G~~~~l~~------------~~gk~~vl~F~---------~~~~C~~C~~~~~~l~~l~~~~~~~~ 78 (167)
T 2jsy_A 20 VGDQAPDFTVLTNSLEEKSLAD------------MKGKVTIISVI---------PSIDTGVCDAQTRRFNEEAAKLGDVN 78 (167)
T ss_dssp TTSCCCCCEEEBTTCCEEEHHH------------HTTSCEEEEEC---------SCSTTSHHHHTHHHHHHHHHHHSSCE
T ss_pred CCCcCCceEEECCCCCEeeHHH------------hCCCeEEEEEe---------cCCCCCchHHHHHHHHHHHHHcCCCE
Confidence 3456899999999999998653 35898888665 888 9888621 11127899
Q ss_pred EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC-ChHHHHHHhcccCCc----ccEEEEEeCCCcEEE
Q 024610 166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG-DHYYFRKELKILNLL----TGYIFLLDKFGRIRW 240 (265)
Q Consensus 166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g-~~~~iRe~Lgi~N~~----vGYVyLVD~~grIRW 240 (265)
+|.|++++.-. ++.+ .+..+. ....++ .+ ....+.+.+|+.... ++.+||||++|+|+|
T Consensus 79 vv~is~d~~~~-----~~~~-----~~~~~~-----~~~~~~-~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~ 142 (167)
T 2jsy_A 79 VYTISADLPFA-----QARW-----CGANGI-----DKVETL-SDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVY 142 (167)
T ss_dssp EEEEECSSGGG-----TSCC-----GGGSSC-----TTEEEE-EGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEE
T ss_pred EEEEECCCHHH-----HHHH-----HHhcCC-----CCceEe-eCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEE
Confidence 99999975321 1111 111111 012222 24 356788899987532 478999999999999
Q ss_pred cccCCCC--HHHHHHHHHHHHhhhc
Q 024610 241 QGFGMAT--PEELSSLLSCTSLLLE 263 (265)
Q Consensus 241 agsG~at--~~E~e~L~k~~~~Ll~ 263 (265)
...|... ..+.+.+.+.++.|++
T Consensus 143 ~~~g~~~~~~~~~~~l~~~l~~llk 167 (167)
T 2jsy_A 143 AEYVSEATNHPNYEKPIEAAKALVK 167 (167)
T ss_dssp EEECSBTTSCCCSHHHHHHHHHHHC
T ss_pred EEecCCcCCCCCHHHHHHHHHHhhC
Confidence 9987532 2244566666777763
No 15
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.95 E-value=7.3e-09 Score=85.65 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=91.1
Q ss_pred cccccccccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------
Q 024610 89 IIPALAAVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------- 156 (265)
Q Consensus 89 l~ka~~AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------- 156 (265)
.++......+|+|.+.++ +|+++++.+ ++||++||.++ .+||.+|..
T Consensus 28 ~~~~~~g~~~p~f~l~~~~~~g~~~~l~~------------~~gk~vlv~F~---------a~~C~~C~~~~~~l~~l~~ 86 (183)
T 3lwa_A 28 FYDEADRQQLPDIGGDSLMEEGTQINLSD------------FENQVVILNAW---------GQWCAPCRSESDDLQIIHE 86 (183)
T ss_dssp ECCGGGCCCCCCCEEEBSSSTTCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHH
T ss_pred ecccccCCCCCceeccccccCCcEecHHH------------hCCCEEEEEEE---------CCcCHhHHHHHHHHHHHHH
Confidence 456677889999999999 999998653 36899888666 899998872
Q ss_pred hhcc-----CCCeeEEEEeccc-chhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcc-cCCcccE
Q 024610 157 AFSD-----SKNVHLYEVSFID-SWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKI-LNLLTGY 228 (265)
Q Consensus 157 ~~~~-----~~~vqiv~In~~e-~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi-~N~~vGY 228 (265)
.+.+ .+++++|.|++++ +.- . ++.+ +++ +++. .+ ..+....+.+.++. .-..++.
T Consensus 87 ~~~~~~~~~~~~v~~v~v~~d~~~~~--~--~~~~----~~~~~~~~--------~~-~~d~~~~~~~~~~~~~v~~~P~ 149 (183)
T 3lwa_A 87 ELQAAGNGDTPGGTVLGINVRDYSRD--I--AQDF----VTDNGLDY--------PS-IYDPPFMTAASLGGVPASVIPT 149 (183)
T ss_dssp HHHHCC---CCSEEEEEEECSCCCHH--H--HHHH----HHHTTCCS--------CE-EECTTCGGGGGTTTCCTTCCSE
T ss_pred HHHhcCCCccCCcEEEEEECCCCCHH--H--HHHH----HHHcCCCc--------cE-EECCcchHHHHhccCCCCCCCe
Confidence 2222 1344999999987 221 1 2232 222 2221 12 24566666777752 2235899
Q ss_pred EEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 229 IFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 229 VyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
+||||++|+|++...|..++++++. .++.|++|
T Consensus 150 ~~lid~~G~i~~~~~g~~~~~~l~~---~l~~ll~~ 182 (183)
T 3lwa_A 150 TIVLDKQHRPAAVFLREVTSKDVLD---VALPLVDE 182 (183)
T ss_dssp EEEECTTSCEEEEECSCCCHHHHHH---HHHHHHHC
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHH---HHHHHHhc
Confidence 9999999999999999988777654 44455554
No 16
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.94 E-value=2.3e-08 Score=80.34 Aligned_cols=123 Identities=12% Similarity=0.158 Sum_probs=86.0
Q ss_pred ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hccC
Q 024610 92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDS 161 (265)
Q Consensus 92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~ 161 (265)
...+..+|++.+.+++|+++++.. ++||+.||.++ ++||.+|... +. .
T Consensus 8 ~~~g~~~p~~~l~~~~g~~~~l~~------------~~gk~vlv~f~---------~~~C~~C~~~~~~l~~l~~~~~-~ 65 (165)
T 3or5_A 8 DARPTPAPSFSGVTVDGKPFSSAS------------LKGKAYIVNFF---------ATWCPPCRSEIPDMVQVQKTWA-S 65 (165)
T ss_dssp CCCCCBCCCCEEECTTSCEEEGGG------------GTTCEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHT-T
T ss_pred hcCCCCCCCceeeCCCCCEechhH------------cCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhc-c
Confidence 345678999999999999998653 35899888666 8999988731 22 2
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHh------cccCCcccEEEEEeC
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKEL------KILNLLTGYIFLLDK 234 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~L------gi~N~~vGYVyLVD~ 234 (265)
.++++|.|+++++.- . ++.+ +.+ +.+. .+ ..++ ..+.+.+ ++. .++.+||||+
T Consensus 66 ~~v~~v~v~~d~~~~--~--~~~~----~~~~~~~~--------~~-~~~~-~~~~~~~~~~~~~~i~--~~P~~~lid~ 125 (165)
T 3or5_A 66 RGFTFVGIAVNEQLP--N--VKNY----MKTQGIIY--------PV-MMAT-PELIRAFNGYIDGGIT--GIPTSFVIDA 125 (165)
T ss_dssp TTEEEEEEECSCCHH--H--HHHH----HHHHTCCS--------CE-EECC-HHHHHHHHTTSTTCSC--SSSEEEEECT
T ss_pred CCeEEEEEECCCCHH--H--HHHH----HHHcCCCC--------ce-EecC-HHHHHHHhhhhccCCC--CCCeEEEECC
Confidence 359999999987432 1 2222 222 2221 11 1233 4788888 565 4999999999
Q ss_pred CCcEEEcccCCCCHHHHHHHHH
Q 024610 235 FGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 235 ~grIRWagsG~at~~E~e~L~k 256 (265)
+|+|++...|..++++++...+
T Consensus 126 ~G~i~~~~~g~~~~~~l~~~l~ 147 (165)
T 3or5_A 126 SGNVSGVIVGPRSKADFDRIVK 147 (165)
T ss_dssp TSBEEEEECSCCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHH
Confidence 9999999999998877665443
No 17
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.94 E-value=2.4e-08 Score=79.31 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=87.5
Q ss_pred cccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-cc--CCCe
Q 024610 95 AVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD--SKNV 164 (265)
Q Consensus 95 AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~--~~~v 164 (265)
+...| ++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+ .. ..++
T Consensus 6 G~~~p~~f~l~~~~g~~~~l~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~l~~~~~~~~~ 64 (152)
T 2lja_A 6 GNPSAASFSYPDINGKTVSLAD------------LKGKYIYIDVW---------ATWCGPCRGELPALKELEEKYAGKDI 64 (152)
T ss_dssp TCCCSSSCEEEETTTEEEESTT------------TTTSEEEEEEC---------CSSCCGGGGTHHHHHHHHHHSTTSSE
T ss_pred CCCCCcccEeecCCCCEeeHHH------------cCCCEEEEEEE---------CCcCHhHHHHhHHHHHHHHHhccCCe
Confidence 44578 9999999999998653 25899888665 889998862 11 22 2369
Q ss_pred eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
++|.|+++++.- . ++.+ +.+ +.+. . .+..+....+.+.+|+.- ++.+||+|++|+|++...
T Consensus 65 ~~v~v~~d~~~~--~--~~~~----~~~~~~~~-------~-~~~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~ 126 (152)
T 2lja_A 65 HFVSLSCDKNKK--A--WENM----VTKDQLKG-------I-QLHMGTDRTFMDAYLING--IPRFILLDRDGKIISANM 126 (152)
T ss_dssp EEEEEECCSCHH--H--HHHH----HHHHTCCS-------E-EEECSSCTHHHHHTTCCS--SCCEEEECTTSCEEESSC
T ss_pred EEEEEEccCcHH--H--HHHH----HHhcCCCC-------c-eeecCcchhHHHHcCcCC--CCEEEEECCCCeEEEccC
Confidence 999999987531 1 2332 222 2221 1 122455678999999975 999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 024610 244 GMATPEELSSLLSC 257 (265)
Q Consensus 244 G~at~~E~e~L~k~ 257 (265)
|..++++++.+.+.
T Consensus 127 g~~~~~~l~~~l~~ 140 (152)
T 2lja_A 127 TRPSDPKTAEKFNE 140 (152)
T ss_dssp CCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99888877665543
No 18
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.94 E-value=1.5e-08 Score=80.49 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=86.4
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
.+..+|++.+.+ +|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .+
T Consensus 5 ~G~~~P~f~l~~-~g~~~~l~~------------~~gk~vll~f~---------~~~C~~C~~~~~~l~~l~~~~~~-~~ 61 (152)
T 3gl3_A 5 KGDKAPDFALPG-KTGVVKLSD------------KTGSVVYLDFW---------ASWCGPCRQSFPWMNQMQAKYKA-KG 61 (152)
T ss_dssp TTSBCCCCEEEB-SSSEEEGGG------------GTTSEEEEEEE---------CTTCTHHHHHHHHHHHHHHHHGG-GT
T ss_pred CCCcCCceEeeC-CCCeEeHHH------------hCCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHhhc-CC
Confidence 456789999999 999998653 25898888666 889998863 2222 25
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
+++|.|+++++.- . +..+ +++ .+.. ..+ ..+....+.+.+|+.. ++.+||||++|+|++...
T Consensus 62 ~~~v~v~~d~~~~--~--~~~~----~~~-~~~~------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~ 123 (152)
T 3gl3_A 62 FQVVAVNLDAKTG--D--AMKF----LAQ-VPAE------FTV-AFDPKGQTPRLYGVKG--MPTSFLIDRNGKVLLQHV 123 (152)
T ss_dssp EEEEEEECCSSHH--H--HHHH----HHH-SCCC------SEE-EECTTCHHHHHTTCCS--SSEEEEECTTSBEEEEEE
T ss_pred eEEEEEECCCCHH--H--HHHH----HHH-cCCC------Cce-eECCcchhHHHcCCCC--CCeEEEECCCCCEEEEEc
Confidence 9999999986421 1 2222 222 2211 112 2466678999999975 999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc
Q 024610 244 GMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 244 G~at~~E~e~L~k~~~~Ll~ 263 (265)
|+.++ +.+.|.+.++.++.
T Consensus 124 g~~~~-~~~~l~~~i~~~~~ 142 (152)
T 3gl3_A 124 GFRPA-DKEALEQQILAALG 142 (152)
T ss_dssp SCCTT-THHHHHHHHHHHTC
T ss_pred cCCCc-CHHHHHHHHHHHHc
Confidence 97544 33444444444443
No 19
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.94 E-value=6.9e-09 Score=81.15 Aligned_cols=124 Identities=16% Similarity=0.225 Sum_probs=87.3
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccC--CC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDS--KN 163 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~--~~ 163 (265)
..+..+|++.+.+++|+++++.+ +||+.||.++ ++||.+|... .... .+
T Consensus 10 ~~g~~~p~~~l~~~~g~~~~l~~-------------~gk~~ll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~ 67 (145)
T 3erw_A 10 KQPAVPAVFLMKTIEGEDISIPN-------------KGQKTILHFW---------TSWCPPCKKELPQFQSFYDAHPSDS 67 (145)
T ss_dssp --CCSCCEEEEECTTSCEEEESC-------------TTSEEEEEEE---------CSSCHHHHHHHHHHHHHHHHCCCSS
T ss_pred cCCCcCCCceeecCCCCEEeHHH-------------CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHcCCCC
Confidence 45677999999999999987642 4799888666 8999988731 1223 37
Q ss_pred eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
+++|.|++++.- -... ++.+ +++ .+.. ..+ ..+....+.+.+++.. ++.+||+|++|+|++..
T Consensus 68 ~~~v~v~~d~~~~~~~~--~~~~----~~~-~~~~------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~ 131 (145)
T 3erw_A 68 VKLVTVNLVNSEQNQQV--VEDF----IKA-NKLT------FPI-VLDSKGELMKEYHIIT--IPTSFLLNEKGEIEKTK 131 (145)
T ss_dssp EEEEEEECGGGSSCHHH--HHHH----HHH-TTCC------SCE-EECSSSHHHHHTTCCE--ESEEEEECTTCCEEEEE
T ss_pred EEEEEEEccCCcCCHHH--HHHH----HHH-cCCc------eeE-EEcCchhHHHhcCcCc--cCeEEEEcCCCcEEEEE
Confidence 999999997521 1111 2222 222 2211 112 2466678999999985 99999999999999999
Q ss_pred cCCCCHHHHHHH
Q 024610 243 FGMATPEELSSL 254 (265)
Q Consensus 243 sG~at~~E~e~L 254 (265)
.|..++++++.+
T Consensus 132 ~g~~~~~~l~~~ 143 (145)
T 3erw_A 132 IGPMTAEQLKEW 143 (145)
T ss_dssp ESCCCHHHHHHH
T ss_pred cCCcCHHHHHHh
Confidence 999999988754
No 20
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.93 E-value=3e-09 Score=85.36 Aligned_cols=127 Identities=18% Similarity=0.115 Sum_probs=85.6
Q ss_pred cccCCCceeeC-CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-h-------cc--CCC
Q 024610 95 AVKFPDLDVSY-SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-F-------SD--SKN 163 (265)
Q Consensus 95 AlyFPnl~~~~-l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-~-------~~--~~~ 163 (265)
....|++.+.+ ++|+++++.+ ++||+.||.++ ++||.+|... . .. ..+
T Consensus 6 g~~~p~~~~~~~~~g~~~~l~~------------~~gk~vlv~F~---------a~~C~~C~~e~~~~l~~l~~~~~~~~ 64 (160)
T 3lor_A 6 NAPLLELDVQEWVNHEGLSNED------------LRGKVVVVEVF---------QMLCPGCVNHGVPQAQKIHRMIDESQ 64 (160)
T ss_dssp TCCBCCCCEEEESSSCCCCHHH------------HTTSEEEEEEE---------CTTCHHHHHTHHHHHHHHHHHSCTTT
T ss_pred CCcCCCcccccccCCCccCHHH------------hCCCEEEEEEE---------cCCCcchhhhhhHHHHHHHHHhCcCC
Confidence 44678999888 8998887542 36899988666 8899998752 2 11 236
Q ss_pred eeEEEEecc------cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHH------HHHHhcccCCcccEEE
Q 024610 164 VHLYEVSFI------DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYY------FRKELKILNLLTGYIF 230 (265)
Q Consensus 164 vqiv~In~~------e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~------iRe~Lgi~N~~vGYVy 230 (265)
+++|.|+++ ++. .. ++.+ +++ +++. . ++ .+.... +-+.+|+.- ++.+|
T Consensus 65 v~~v~v~~~~~~~~~~~~--~~--~~~~----~~~~~~~~------~-~~--~d~~~~~~~~~~~~~~~~v~~--~P~~~ 125 (160)
T 3lor_A 65 VQVIGLHSVFEHHDVMTP--EA--LKVF----IDEFGIKF------P-VA--VDMPREGQRIPSTMKKYRLEG--TPSII 125 (160)
T ss_dssp EEEEEEECCCSCGGGSCH--HH--HHHH----HHHTTCCS------C-EE--EECCCTTCSSCHHHHHTTCCS--SSEEE
T ss_pred cEEEEEeccccccccCCH--HH--HHHH----HHHcCCCC------c-EE--ECCccccchhhhHHHhcccCc--cceEE
Confidence 999999984 221 11 2332 222 2221 1 11 244344 889999975 99999
Q ss_pred EEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 231 LLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 231 LVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
|||++|+|++...|..++++++ +.++.||++
T Consensus 126 lid~~G~i~~~~~g~~~~~~l~---~~i~~ll~~ 156 (160)
T 3lor_A 126 LADRKGRIRQVQFGQVDDFVLG---LLLGSLLSE 156 (160)
T ss_dssp EECTTSBEEEEEESCCCHHHHH---HHHHHHHTC
T ss_pred EECCCCcEEEEecCcCCHHHHH---HHHHHHHhc
Confidence 9999999999999998887655 445556654
No 21
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.93 E-value=2.5e-08 Score=79.71 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=79.5
Q ss_pred CCCceeeC-CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-c--cCCCeeEE
Q 024610 98 FPDLDVSY-SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-S--DSKNVHLY 167 (265)
Q Consensus 98 FPnl~~~~-l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~--~~~~vqiv 167 (265)
+|.+.... .+|+++++.+ ++||+.||.++ ++||.+|... + . ...++++|
T Consensus 3 ~pa~~~~~~~~G~~~~l~~------------~~gk~vlv~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~v~vv 61 (151)
T 3raz_A 3 LSADELAGWKDNTPQSLQS------------LKAPVRIVNLW---------ATWCGPCRKEMPAMSKWYKAQKKGSVDMV 61 (151)
T ss_dssp ----CEEETTTCCEECGGG------------CCSSEEEEEEE---------CTTCHHHHHHHHHHHHHHHTSCTTTEEEE
T ss_pred CCcchhhcccCCCEecHHH------------hCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 34444333 7899987642 36899888666 8999998731 1 2 23579999
Q ss_pred EEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC
Q 024610 168 EVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 168 ~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a 246 (265)
.|++++.-- ++.+ +++ +++. ......-+....+-+.+|..-..++.+||+|++|+|++...|..
T Consensus 62 ~v~~d~~~~-----~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~ 126 (151)
T 3raz_A 62 GIALDTSDN-----IGNF----LKQTPVSY------PIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEV 126 (151)
T ss_dssp EEESSCHHH-----HHHH----HHHSCCSS------CEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEECCSCC
T ss_pred EEECCChHH-----HHHH----HHHcCCCC------ceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEECCCC
Confidence 999976321 2332 222 2221 11111123357788889833335899999999999999999999
Q ss_pred CHHHHHHHHHH
Q 024610 247 TPEELSSLLSC 257 (265)
Q Consensus 247 t~~E~e~L~k~ 257 (265)
++++++...+-
T Consensus 127 ~~~~l~~~l~~ 137 (151)
T 3raz_A 127 NEKSLTDAVKL 137 (151)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98887665543
No 22
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.93 E-value=1.1e-08 Score=81.55 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=86.7
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccC--CCe
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDS--KNV 164 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~--~~v 164 (265)
.+..+|++.+.+++|+++++.+ ++||+.||.++ .+||.+|... .... .++
T Consensus 4 ~G~~~p~~~l~~~~g~~~~l~~------------~~gk~vll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~ 62 (154)
T 3kcm_A 4 EENPAPDFTLNTLNGEVVKLSD------------LKGQVVIVNFW---------ATWCPPCREEIPSMMRLNAAMAGKPF 62 (154)
T ss_dssp TTSBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHTTTSSE
T ss_pred CCCCCCCeEEEcCCCCEEehhh------------cCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhccCCe
Confidence 3567899999999999998653 25899888666 8899988731 1222 369
Q ss_pred eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
++|.|+++++-... ++.+ +++ +.+. . + ..+....+.+.+|+.- ++.+||||++|+|++...
T Consensus 63 ~~v~v~~d~~~~~~---~~~~----~~~~~~~~-------~-~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~ 124 (154)
T 3kcm_A 63 RMLCVSIDEGGKVA---VEEF----FRKTGFTL-------P-V-LLDADKRVGKLYGTTG--VPETFVIDRHGVILKKVV 124 (154)
T ss_dssp EEEEEECCTTHHHH---HHHH----HHHHCCCC-------C-E-EECTTCHHHHHHTCCS--BCEEEEECTTSBEEEEEE
T ss_pred EEEEEEcCCcchHH---HHHH----HHHcCCCe-------e-E-EecCchHHHHHhCCCC--CCeEEEECCCCcEEEEEc
Confidence 99999998752111 2232 122 2221 1 1 2466677999999985 999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHhhhc
Q 024610 244 GMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 244 G~at~~E~e~L~k~~~~Ll~ 263 (265)
|..+.+ .+.+.+.++.|..
T Consensus 125 g~~~~~-~~~l~~~l~~l~~ 143 (154)
T 3kcm_A 125 GAMEWD-HPEVIAFLNNELS 143 (154)
T ss_dssp SCCCTT-SHHHHHHHHTC--
T ss_pred CCCccc-cHHHHHHHHHHHH
Confidence 886432 2334444444443
No 23
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.92 E-value=6.3e-09 Score=83.42 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred cccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-h-------ccC--C
Q 024610 95 AVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-F-------SDS--K 162 (265)
Q Consensus 95 AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-~-------~~~--~ 162 (265)
+...|+|.+.++ +|+++++.+ ++||+.||.++ ++||.||... . ... .
T Consensus 3 g~~aP~f~l~~~~~~g~~~~l~~------------~~gk~vlv~f~---------a~wC~~C~~~~~~~l~~l~~~~~~~ 61 (158)
T 3eyt_A 3 AMKAPELQIQQWFNSATDLTLAD------------LRGKVIVIEAF---------QMLCPGCVMHGIPLAQKVRAAFPED 61 (158)
T ss_dssp CEECCCCCEEEEESCSSCCCTGG------------GTTSEEEEEEE---------CTTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred CCcCCCceehhhhcCCCccCHHH------------hCCCEEEEEEE---------CCcCcchhhhhhHHHHHHHHHhCcC
Confidence 345799999885 788876542 36899988666 8999999852 2 122 3
Q ss_pred CeeEEEEecc------cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChH-----HHHHHhcccCCcccEEE
Q 024610 163 NVHLYEVSFI------DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHY-----YFRKELKILNLLTGYIF 230 (265)
Q Consensus 163 ~vqiv~In~~------e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~-----~iRe~Lgi~N~~vGYVy 230 (265)
++++|.|+++ ++. .. ++.+ +.+ +++. . ++ .+... .+-+.+|+.- ++.+|
T Consensus 62 ~v~~v~v~~~~~~~~~~~~--~~--~~~~----~~~~~~~~------~-~~--~d~~~~~~~~~~~~~~~v~~--~P~~~ 122 (158)
T 3eyt_A 62 KVAVLGLHTVFEHHEAMTP--IS--LKAF----LHEYRIKF------P-VG--VDQPGDGAMPRTMAAYQMRG--TPSLL 122 (158)
T ss_dssp TEEEEEEECCCSCGGGSCH--HH--HHHH----HHHTTCCS------C-EE--EECCCSSSSCHHHHHTTCCS--SSEEE
T ss_pred CEEEEEEEecccccccCCH--HH--HHHH----HHHcCCCc------e-EE--EcCccchhhHHHHHHcCCCC--CCEEE
Confidence 7999999984 221 11 2332 222 2221 1 11 22222 5889999875 99999
Q ss_pred EEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 231 LLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 231 LVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
|||++|+|++...|..++++++. .++.|+++
T Consensus 123 lid~~G~i~~~~~g~~~~~~l~~---~i~~ll~~ 153 (158)
T 3eyt_A 123 LIDKAGDLRAHHFGDVSELLLGA---EIATLLGE 153 (158)
T ss_dssp EECTTSEEEEEEESCCCHHHHHH---HHHHHHTS
T ss_pred EECCCCCEEEEEeCCCCHHHHHH---HHHHHhcc
Confidence 99999999999999998877554 44555554
No 24
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=98.92 E-value=8.6e-09 Score=83.11 Aligned_cols=133 Identities=11% Similarity=0.010 Sum_probs=89.3
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHHh------h-cc--CC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SK 162 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~ 162 (265)
..+...|++.+.+++|+++++.+ ++|| +.||.+| + ++||.+|... + .. ..
T Consensus 10 ~~G~~~p~f~l~~~~G~~~~l~~------------~~gk~~vvl~F~-~-------a~~C~~C~~~~~~l~~~~~~~~~~ 69 (160)
T 1xvw_A 10 NVGATAPDFTLRDQNQQLVTLRG------------YRGAKNVLLVFF-P-------LAFTGICQGELDQLRDHLPEFEND 69 (160)
T ss_dssp CTTSBCCCCEEECTTSCEEEGGG------------GTTTCEEEEEEC-S-------CTTSSHHHHHHHHHHHTGGGTSSS
T ss_pred CCCCCCCCeEeEcCCCCEEeHHH------------hcCCCCEEEEEE-C-------CCCCCchHHHHHHHHHHHHHHHHC
Confidence 34556899999999999998653 3587 8777553 2 7899998731 1 22 24
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC--hHHHHHHhcccCC--ccc--EEEEEeCCC
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD--HYYFRKELKILNL--LTG--YIFLLDKFG 236 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~--~~~iRe~Lgi~N~--~vG--YVyLVD~~g 236 (265)
++++|.|++++.-. ++.+ ... .+++ ..+ ..+. ...+.+.+|+... .++ .+||||++|
T Consensus 70 ~~~vv~is~d~~~~-----~~~~-~~~--~~~~--------~~~-~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G 132 (160)
T 1xvw_A 70 DSAALAISVGPPPT-----HKIW-ATQ--SGFT--------FPL-LSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSG 132 (160)
T ss_dssp SEEEEEEESCCHHH-----HHHH-HHH--HTCC--------SCE-EECTTTTTHHHHHTTCEETTTTEECSEEEEECTTS
T ss_pred CcEEEEEeCCCHHH-----HHHH-HHh--cCCC--------ceE-EecCCcChHHHHHcCCccccCCCeeeeEEEECCCC
Confidence 79999999975321 2332 111 1222 112 1342 5778899998732 245 899999999
Q ss_pred cEEEcccCCCCHH-HHHHHHHHHHhhh
Q 024610 237 RIRWQGFGMATPE-ELSSLLSCTSLLL 262 (265)
Q Consensus 237 rIRWagsG~at~~-E~e~L~k~~~~Ll 262 (265)
+|+|...|..+.+ +++.+.+.++.|.
T Consensus 133 ~i~~~~~g~~~~~~~~~~l~~~l~~l~ 159 (160)
T 1xvw_A 133 IIRFAEMKQPGEVRDQRLWTDALAALT 159 (160)
T ss_dssp BEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 9999999986543 6777877777664
No 25
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.92 E-value=1.3e-08 Score=78.87 Aligned_cols=121 Identities=6% Similarity=-0.052 Sum_probs=85.2
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEEE
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLYE 168 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv~ 168 (265)
...|++.+++++|+++++.. ++||+.||.++ ++||.+|.. .....++++++.
T Consensus 2 ~~~p~~~l~~~~g~~~~l~~------------~~~k~~lv~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~~ 60 (136)
T 1lu4_A 2 DERLQFTATTLSGAPFDGAS------------LQGKPAVLWFW---------TPWCPFCNAEAPSLSQVAAANPAVTFVG 60 (136)
T ss_dssp GGGGCCEEEBTTSCEEEGGG------------GTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCeEeecCCCCeecHHH------------hCCCEEEEEEE---------CCcChhHHHHHHHHHHHHHHCCCcEEEE
Confidence 35799999999999998653 25899888666 889998873 123334899999
Q ss_pred EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc---CC
Q 024610 169 VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF---GM 245 (265)
Q Consensus 169 In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags---G~ 245 (265)
|+++++.- . ++.+ ... .+.+ ..+ ..+....+.+.+|+.. ++.+||+|++|+|+ ... |.
T Consensus 61 v~~~~~~~--~--~~~~-~~~--~~~~--------~~~-~~d~~~~~~~~~~i~~--~P~~~lid~~G~i~-~~~~~~g~ 121 (136)
T 1lu4_A 61 IATRADVG--A--MQSF-VSK--YNLN--------FTN-LNDADGVIWARYNVPW--QPAFVFYRADGTST-FVNNPTAA 121 (136)
T ss_dssp EECSSCHH--H--HHHH-HHH--HTCC--------SEE-EECTTSHHHHHTTCCS--SSEEEEECTTSCEE-EECCSSSC
T ss_pred EEcCCCHH--H--HHHH-HHH--cCCC--------ceE-EECCchhHHHhcCCCC--CCEEEEECCCCcEE-EEEcCCCc
Confidence 99987421 1 2332 111 1222 112 2366678889999975 99999999999999 888 88
Q ss_pred CCHHHHHHHHH
Q 024610 246 ATPEELSSLLS 256 (265)
Q Consensus 246 at~~E~e~L~k 256 (265)
.++++++...+
T Consensus 122 ~~~~~l~~~l~ 132 (136)
T 1lu4_A 122 MSQDELSGRVA 132 (136)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 88887665443
No 26
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=98.91 E-value=1.7e-08 Score=82.13 Aligned_cols=138 Identities=9% Similarity=-0.006 Sum_probs=83.5
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc-hhH----------HhhccCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS-PFF----------EAFSDSK 162 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~-p~~----------e~~~~~~ 162 (265)
.+...|+|.+.+++|+++++.+ ++||+.||.+| .+||. +|. +.+.+..
T Consensus 9 ~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~f~---------~~~C~~~C~~~~~~l~~l~~~~~~~~ 67 (174)
T 1xzo_A 9 LNYEVEPFTFQNQDGKNVSLES------------LKGEVWLADFI---------FTNCETICPPMTAHMTDLQKKLKAEN 67 (174)
T ss_dssp CCEECCCCEEECTTSCEEETGG------------GTTCCEEEEEE---------CSCCSSCCCSHHHHHHHHHHHHHHTT
T ss_pred cccccCCcEEEcCCCCEEehhh------------cCCCEEEEEEE---------cCCCcchhHHHHHHHHHHHHHhhhcC
Confidence 3456899999999999998653 36899888666 89998 773 2333332
Q ss_pred -CeeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcc--------------cCCcc
Q 024610 163 -NVHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKI--------------LNLLT 226 (265)
Q Consensus 163 -~vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi--------------~N~~v 226 (265)
++++|.|++++.. .... ++.+ .+..+.. | ....+ ..+....+-+.+++ .-..+
T Consensus 68 ~~~~vv~is~d~~~d~~~~--~~~~-----~~~~~~~-~--~~~~~-l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (174)
T 1xzo_A 68 IDVRIISFSVDPENDKPKQ--LKKF-----AANYPLS-F--DNWDF-LTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQ 136 (174)
T ss_dssp CCCEEEEEESCTTTCCHHH--HHHH-----HTTSCCC-G--GGEEE-EBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSC
T ss_pred CcEEEEEEEeCCCCCCHHH--HHHH-----HHHcCCC-C--cceEE-EeCCCHHHHHHHHHhhcCeeEeecCCCCeeeee
Confidence 5999999997421 0011 2222 2222211 0 00022 23534444455543 11247
Q ss_pred cEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 227 GYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
+.+||||++|+|++...|..+ ...+.|.+.++.|+++
T Consensus 137 p~~~lid~~G~i~~~~~g~~~-~~~~~l~~~l~~ll~~ 173 (174)
T 1xzo_A 137 SSFYLVGPDGKVLKDYNGVEN-TPYDDIISDVKSASTL 173 (174)
T ss_dssp CEEEEECTTSEEEEEEESSSS-CCHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCeEEEEEcCCCC-CCHHHHHHHHHHHHhc
Confidence 789999999999999888763 1233455566667764
No 27
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=98.90 E-value=3.3e-09 Score=88.61 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=90.4
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEE
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLY 167 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv 167 (265)
.|+|.+.+.+|+++++.+ ++||+.||.+| + .+||.+|.. .+. ..++++|
T Consensus 31 aP~f~l~~~~G~~v~l~d------------~~Gk~vvl~f~-~-------~~~c~~C~~el~~l~~l~~~~~-~~~~~vv 89 (179)
T 3ixr_A 31 LLNHPLMLSGSTCKTLSD------------YTNQWLVLYFY-P-------KDNTPGSSTEGLEFNLLLPQFE-QINATVL 89 (179)
T ss_dssp HHHCCEEEGGGEEECGGG------------GTTSEEEEEEC-S-------CTTSHHHHHHHHHHHHHHHHHH-TTTEEEE
T ss_pred CCCeeEECCCCCEEeHHH------------HCCCCEEEEEE-c-------CCCCCchHHHHHHHHHHHHHHH-HCCCEEE
Confidence 899999999999987643 46897666443 2 789988862 233 3479999
Q ss_pred EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc----------ccEEEEEeCCCc
Q 024610 168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----------TGYIFLLDKFGR 237 (265)
Q Consensus 168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----------vGYVyLVD~~gr 237 (265)
.|+.++... ++.+ +.. .+++ ..+ ..+....+-+++|+.... ++.+||||++|+
T Consensus 90 ~Vs~D~~~~-----~~~~-~~~--~~~~--------f~~-l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~ 152 (179)
T 3ixr_A 90 GVSRDSVKS-----HDSF-CAK--QGFT--------FPL-VSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHR 152 (179)
T ss_dssp EEESCCHHH-----HHHH-HHH--HTCC--------SCE-EECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSB
T ss_pred EEcCCCHHH-----HHHH-HHH--cCCc--------eEE-EECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCE
Confidence 999875321 2332 111 1222 122 235567888999986532 567999999999
Q ss_pred EEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 238 IRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 238 IRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
||+...|...+.+.+.+.+.++.|.++
T Consensus 153 I~~~~~~~~~~~~~~~il~~l~~l~~q 179 (179)
T 3ixr_A 153 IVEAWRQVKVPGHAEEVLNKLKAHAEQ 179 (179)
T ss_dssp EEEEECSCCSTTHHHHHHHHHHHHHC-
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHhcC
Confidence 999888888888889999998888753
No 28
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.90 E-value=3.1e-08 Score=76.00 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=83.9
Q ss_pred CCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-ccC-CCeeEEEE
Q 024610 98 FPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDS-KNVHLYEV 169 (265)
Q Consensus 98 FPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~-~~vqiv~I 169 (265)
.|++.+.+.+|+++++.+ ++||+.||.++ ++||.+|.. .+ ... .++++|.|
T Consensus 2 ~p~f~l~~~~g~~~~l~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i 60 (138)
T 4evm_A 2 VADFELMGVDGKTYRLSD------------YKGKKVYLKFW---------ASWCSICLASLPDTDEIAKEAGDDYVVLTV 60 (138)
T ss_dssp CCCCEEEBTTSCEEEGGG------------GTTSEEEEEEC---------CTTCHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred CCcceeECCCCCEEEHHH------------hCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 699999999999998653 35899888665 899998863 22 222 47899998
Q ss_pred ecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHH
Q 024610 170 SFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPE 249 (265)
Q Consensus 170 n~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~ 249 (265)
+....-...- ..-+...+ +..+.. ...+ ..+....+.+.+|+.. ++.+||+|++|+|++...|..+++
T Consensus 61 ~~~~~~~~~~---~~~~~~~~-~~~~~~-----~~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~ 128 (138)
T 4evm_A 61 VSPGHKGEQS---EADFKNWY-KGLDYK-----NLPV-LVDPSGKLLETYGVRS--YPTQAFIDKEGKLVKTHPGFMEKD 128 (138)
T ss_dssp ECTTSTTCCC---HHHHHHHH-TTCCCT-----TCCE-EECTTCHHHHHTTCCS--SSEEEEECTTCCEEEEEESCCCHH
T ss_pred EcCCCCchhh---HHHHHHHH-hhcCCC-----CeeE-EECcchHHHHHcCccc--CCeEEEECCCCcEEEeecCCCcHH
Confidence 5432110000 11111112 222211 1222 2466678999999975 999999999999999999999998
Q ss_pred HHHHHHH
Q 024610 250 ELSSLLS 256 (265)
Q Consensus 250 E~e~L~k 256 (265)
++....+
T Consensus 129 ~l~~~l~ 135 (138)
T 4evm_A 129 AILQTLK 135 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776554
No 29
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=98.90 E-value=1.2e-08 Score=82.85 Aligned_cols=121 Identities=9% Similarity=-0.059 Sum_probs=79.8
Q ss_pred CCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH----------hhcc---CCCe
Q 024610 99 PDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE----------AFSD---SKNV 164 (265)
Q Consensus 99 Pnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e----------~~~~---~~~v 164 (265)
|+|.+.+.+|+++++.+ ++||++||-++ .+||.| |.. .+.+ .+++
T Consensus 7 p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v 65 (171)
T 2rli_A 7 GDFHLLDHRGRARCKAD------------FRGQWVLMYFG---------FTHCPDICPDELEKLVQVVRQLEAEPGLPPV 65 (171)
T ss_dssp SCCEEEETTSCEEETTT------------TTTSEEEEEEE---------CTTCSSSHHHHHHHHHHHHHHHHHSTTSCCE
T ss_pred CCeEEEeCCCCEEeHHH------------hCCCEEEEEEE---------cCCCCchhHHHHHHHHHHHHHHhhccCCCce
Confidence 89999999999998652 36899888555 899998 862 2332 2689
Q ss_pred eEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccCC-------------ccc
Q 024610 165 HLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILNL-------------LTG 227 (265)
Q Consensus 165 qiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N~-------------~vG 227 (265)
++|-|+++... .... ++.+ +.+ .+.. ..+ ..++. ..+-+++|+... .++
T Consensus 66 ~vv~is~d~~~d~~~~--~~~~----~~~-~~~~------~~~-l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~ 131 (171)
T 2rli_A 66 QPVFITVDPERDDVEA--MARY----VQD-FHPR------LLG-LTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSI 131 (171)
T ss_dssp EEEEEESCSTTCCHHH--HHHH----HHT-TCTT------CCE-EECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCC
T ss_pred EEEEEEECCCCCCHHH--HHHH----HHH-cCCC------eEE-EeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccc
Confidence 99999997421 1111 2332 222 2211 111 13443 357778888642 122
Q ss_pred EEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 228 YIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 228 YVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.+||||++|+|++...|..+++++...
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~ 158 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDS 158 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHH
Confidence 899999999999999999888775443
No 30
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.90 E-value=1.3e-08 Score=80.80 Aligned_cols=118 Identities=11% Similarity=0.134 Sum_probs=74.9
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccC--CCe
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDS--KNV 164 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~--~~v 164 (265)
.+...|++.+ +++|+++++.+ ++||++||.+| ++||.||... .... .++
T Consensus 9 ~G~~~P~f~l-~~~g~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~~ 66 (143)
T 4fo5_A 9 PGDLAPRIEF-LGNDAKASFHN------------QLGRYTLLNFW---------AAYDAESRARNVQLANEVNKFGPDKI 66 (143)
T ss_dssp TTSBCCCCCC------CCCSCC------------SSCCEEEEEEE---------CTTCHHHHHHHHHHHHHHTTSCTTTE
T ss_pred CcccCCceEE-cCCCCEEEHHH------------hCCCEEEEEEE---------cCcCHHHHHHHHHHHHHHHHhCcCCE
Confidence 3557899999 89999887542 36899888665 8999998732 1222 369
Q ss_pred eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRIRW 240 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grIRW 240 (265)
++|.|+++++.- . ++.+ +++ ++++ ...+ .+. ...+.+.+|+.. ++.+||||++|+|++
T Consensus 67 ~vv~vs~d~~~~--~--~~~~----~~~~~~~~------~~~~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~ 128 (143)
T 4fo5_A 67 AMCSISMDEKES--I--FTET----VKIDKLDL------STQF--HEGLGKESELYKKYDLRK--GFKNFLINDEGVIIA 128 (143)
T ss_dssp EEEEEECCSCHH--H--HHHH----HHHHTCCG------GGEE--ECTTGGGSHHHHHTTGGG--CCCEEEECTTSBEEE
T ss_pred EEEEEEccCCHH--H--HHHH----HHHhCCCC------ceee--ecccccchHHHHHcCCCC--CCcEEEECCCCEEEE
Confidence 999999986521 1 2222 222 2332 1111 122 356889999985 899999999999999
Q ss_pred cccCCCCHHHHHHH
Q 024610 241 QGFGMATPEELSSL 254 (265)
Q Consensus 241 agsG~at~~E~e~L 254 (265)
.+- +++|++..
T Consensus 129 ~~~---~~~~l~~~ 139 (143)
T 4fo5_A 129 ANV---TPEKLTEI 139 (143)
T ss_dssp ESC---CHHHHHHH
T ss_pred ccC---CHHHHHHH
Confidence 875 46666544
No 31
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=98.88 E-value=1.2e-08 Score=83.56 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=84.6
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEE
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLY 167 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv 167 (265)
.....|+|.+.+++|+++++.+ ++||+.||.+|. .+||.+|.. ...+..++++|
T Consensus 22 ~G~~aP~f~l~~~~G~~~~l~~------------~~Gk~vvl~f~~--------~~~c~~C~~~~~~l~~~~~~~~~~vv 81 (166)
T 3p7x_A 22 EGDFAPDFTVLDNDLNQVTLAD------------YAGKKKLISVVP--------SIDTGVCDQQTRKFNSDASKEEGIVL 81 (166)
T ss_dssp TTSBCCCCEEECTTSCEEEGGG------------GTTSCEEEEECS--------CTTSHHHHHHHHHHHHHSCTTTSEEE
T ss_pred CCCCCCCeEEEcCCCCEEeHHH------------hCCCcEEEEEEC--------CCCCCccHHHHHHHHHHhhcCCCEEE
Confidence 3457899999999999998653 368987775542 679988862 22222789999
Q ss_pred EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCCc----ccEEEEEeCCCcEEEcc
Q 024610 168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNLL----TGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~~----vGYVyLVD~~grIRWag 242 (265)
.|+.++..- ++.+ .. +.+++ ...++ .+. ...+-+++|+.... ++.+||||++|+|+|..
T Consensus 82 ~is~d~~~~-----~~~~-~~--~~~~~-------~~~~l-~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~ 145 (166)
T 3p7x_A 82 TISADLPFA-----QKRW-CA--SAGLD-------NVITL-SDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE 145 (166)
T ss_dssp EEESSCHHH-----HHHH-HH--HHTCS-------SCEEE-ECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred EEECCCHHH-----HHHH-HH--HcCCC-------ceEEc-cCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 999865321 2332 11 11221 12222 355 56888999997432 78999999999999986
Q ss_pred cCCC--CHHHHHHHHHHHHh
Q 024610 243 FGMA--TPEELSSLLSCTSL 260 (265)
Q Consensus 243 sG~a--t~~E~e~L~k~~~~ 260 (265)
.+.. ...+.+.+.+.++.
T Consensus 146 ~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 146 IVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp ECSBTTSCCCHHHHHHHHHT
T ss_pred EcCCcccCCCHHHHHHHHhc
Confidence 5542 22344555555543
No 32
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.88 E-value=4.7e-08 Score=77.78 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=87.8
Q ss_pred cccccCCCceeeCCCC--------CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh
Q 024610 93 LAAVKFPDLDVSYSDR--------TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF 158 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G--------~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~ 158 (265)
..+..+|++.+.+++| +++++. .+.||+.||.++ ++||.+|.. .+
T Consensus 9 ~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~------------~~~gk~~ll~f~---------~~~C~~C~~~~~~l~~l 67 (156)
T 1kng_A 9 LIGRPAPQTALPPLEGLQADNVQVPGLDPA------------AFKGKVSLVNVW---------ASWCVPCHDEAPLLTEL 67 (156)
T ss_dssp ---CBCCCCCBCCCTTCEETTEECCCBCGG------------GGTTSCEEEEEE---------CTTCHHHHHHHHHHHHH
T ss_pred HhCCCCCCceeeeccCcccccccCceechH------------HhCCCEEEEEEE---------cccCHhHHHHHHHHHHH
Confidence 3455799999999999 665533 235899988666 899999863 33
Q ss_pred ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcE
Q 024610 159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI 238 (265)
Q Consensus 159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grI 238 (265)
.+.++++++.|+++++.- . ++.+ +.. .+.+. .... .+....+.+.+|+.. ++.+||+|++|+|
T Consensus 68 ~~~~~v~~v~v~~~~~~~--~--~~~~-~~~--~~~~~------~~~~--~d~~~~~~~~~~v~~--~P~~~~id~~G~i 130 (156)
T 1kng_A 68 GKDKRFQLVGINYKDAAD--N--ARRF-LGR--YGNPF------GRVG--VDANGRASIEWGVYG--VPETFVVGREGTI 130 (156)
T ss_dssp TTCTTSEEEEEEESCCHH--H--HHHH-HHH--HCCCC------SEEE--EETTSHHHHHTTCCS--SCEEEEECTTSBE
T ss_pred HhcCCeEEEEEECCCCHH--H--HHHH-HHH--cCCCC------ceee--eCchhHHHHhcCcCc--cCeEEEEcCCCCE
Confidence 344679999999987531 1 2222 111 12222 1222 355677889999985 9999999999999
Q ss_pred EEcccCCCCHHHHHHHH-HHHHhh
Q 024610 239 RWQGFGMATPEELSSLL-SCTSLL 261 (265)
Q Consensus 239 RWagsG~at~~E~e~L~-k~~~~L 261 (265)
++...|..+.+++.... +.++.+
T Consensus 131 ~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 131 VYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEESCCCHHHHHHTHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999998888765433 334433
No 33
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.88 E-value=2e-08 Score=80.14 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=85.0
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCee
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVH 165 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vq 165 (265)
..+..+|++.+.+++|+++++.+ ++ |++||.++ ++||.+|... .... +++
T Consensus 6 ~~g~~~p~f~l~~~~g~~~~l~~------------~~-k~vll~f~---------~~~C~~C~~~~~~l~~l~~~~-~v~ 62 (154)
T 3ia1_A 6 KPGEPLPDFLLLDPKGQPVTPAT------------VS-KPAVIVFW---------ASWCTVCKAEFPGLHRVAEET-GVP 62 (154)
T ss_dssp CSBEECCCCCEECTTSCEECTTT------------SC-SSEEEEEE---------CTTCHHHHHHHHHHHHHHHHH-CCC
T ss_pred CCCCcCCceEEECCCCCEechHH------------cC-CeEEEEEE---------cccChhHHHHHHHHHHHHHHc-CCe
Confidence 44567899999999999987542 24 78888665 8899988631 1223 899
Q ss_pred EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcC---ChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFG---DHYYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g---~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
++.|++++.--... ++.+ .+..+. ...+ ..+ ....+.+.+|+.. ++.+||||++|+|++..
T Consensus 63 ~v~v~~d~~~~~~~--~~~~-----~~~~~~------~~~~-~~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~ 126 (154)
T 3ia1_A 63 FYVISREPRDTREV--VLEY-----MKTYPR------FIPL-LASDRDRPHEVAARFKVLG--QPWTFVVDREGKVVALF 126 (154)
T ss_dssp EEEEECCTTCCHHH--HHHH-----HTTCTT------EEEC-BCCSSCCHHHHHTTSSBCS--SCEEEEECTTSEEEEEE
T ss_pred EEEEeCCCcccHHH--HHHH-----HHHcCC------Cccc-ccccccchHHHHHHhCCCc--ccEEEEECCCCCEEEEE
Confidence 99999942111111 2222 222221 1112 123 5688999999985 99999999999999999
Q ss_pred cCCCCHHHHHHHH
Q 024610 243 FGMATPEELSSLL 255 (265)
Q Consensus 243 sG~at~~E~e~L~ 255 (265)
.|..++++++...
T Consensus 127 ~g~~~~~~l~~~l 139 (154)
T 3ia1_A 127 AGRAGREALLDAL 139 (154)
T ss_dssp ESBCCHHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 9999988766544
No 34
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.88 E-value=3.1e-08 Score=78.42 Aligned_cols=120 Identities=8% Similarity=0.026 Sum_probs=80.6
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh---hcc---------
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA---FSD--------- 160 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~--------- 160 (265)
..+..+|+|.+.+++|+++++.+ ++||++||.+| ++||.||... +.+
T Consensus 6 ~~G~~ap~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~~~~l~~~~~ 64 (142)
T 3eur_A 6 RLGTKALNFTYTLDSGVKGTLYQ------------FPAEYTLLFIN---------NPGCHACAEMIEGLKASPVINGFTA 64 (142)
T ss_dssp CTTSBCCCCEEEETTSCEEETTT------------CCCSEEEEEEC---------CSSSHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCccCCcEEEcCCCCEeeHHH------------cCCCEEEEEEE---------CCCCccHHHHHHHHhhhHHHHHHhc
Confidence 34567899999999999997643 35899888655 8999998631 111
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh--HHHHHHhcccCCcccEEEEEeCCCcE
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH--YYFRKELKILNLLTGYIFLLDKFGRI 238 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~--~~iRe~Lgi~N~~vGYVyLVD~~grI 238 (265)
..++++|.|+++++.- . ++.+ +.+ .+.. +.. . ++.. ..+.+.+++.. ++.+||||++|+|
T Consensus 65 ~~~~~vi~i~~d~~~~-~---~~~~----~~~-~~~~----~~~-~--~d~~~~~~~~~~~~v~~--~P~~~lid~~G~i 126 (142)
T 3eur_A 65 AKKLKVLSIYPDEELD-E---WKKH----RND-FAKE----WTN-G--YDKELVIKNKNLYDLRA--IPTLYLLDKNKTV 126 (142)
T ss_dssp TTSEEEEEEECSSCHH-H---HHHH----GGG-SCTT----SEE-E--ECTTCHHHHTTCSCCTT--CSEEEEECTTCBE
T ss_pred cCCeEEEEEEcCCCHH-H---HHHH----HHh-cccc----ccc-c--cCccchhhhhhhcCCCc--CCeEEEECCCCcE
Confidence 3689999999987521 1 1222 222 2211 111 1 2333 23677888874 9999999999999
Q ss_pred EEcccCCCCHHHHHHH
Q 024610 239 RWQGFGMATPEELSSL 254 (265)
Q Consensus 239 RWagsG~at~~E~e~L 254 (265)
++.+.| .++++.+
T Consensus 127 ~~~~~~---~~~l~~~ 139 (142)
T 3eur_A 127 LLKDAT---LQKVEQY 139 (142)
T ss_dssp EEEEEC---HHHHHHH
T ss_pred EecCCC---HHHHHHH
Confidence 999875 5666554
No 35
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=98.87 E-value=2.3e-08 Score=80.42 Aligned_cols=127 Identities=7% Similarity=-0.050 Sum_probs=83.7
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH----------hhcc---CC
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE----------AFSD---SK 162 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e----------~~~~---~~ 162 (265)
.-|++.+.+.+|+++++.+ ++||++||.++ .+||.| |.. .+.+ .+
T Consensus 2 ~ap~f~l~~~~G~~~~l~~------------~~gk~vll~f~---------~~~C~~~C~~~~~~l~~l~~~~~~~~~~~ 60 (164)
T 2ggt_A 2 LGGPFSLTTHTGERKTDKD------------YLGQWLLIYFG---------FTHCPDVCPEELEKMIQVVDEIDSITTLP 60 (164)
T ss_dssp CCCCCEEEETTSCEEEGGG------------GTTCEEEEEEE---------CTTCSSHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCeEEEeCCCCEEeHHH------------cCCCEEEEEEE---------eCCCCchhHHHHHHHHHHHHHHhhccCCC
Confidence 3589999999999998652 36899888665 899998 862 3333 25
Q ss_pred CeeEEEEecccchh-hccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccCCccc-----------
Q 024610 163 NVHLYEVSFIDSWL-LCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILNLLTG----------- 227 (265)
Q Consensus 163 ~vqiv~In~~e~~l-k~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N~~vG----------- 227 (265)
++++|-|+++...- ... ++.+ + +..+.. ..++ .++. ..+-+++|+.. ++
T Consensus 61 ~~~vv~vs~d~~~d~~~~--~~~~----~-~~~~~~------~~~l-~~~~d~~~~~~~~~~v~~--~p~~~~~~~~~~~ 124 (164)
T 2ggt_A 61 DLTPLFISIDPERDTKEA--IANY----V-KEFSPK------LVGL-TGTREEVDQVARAYRVYY--SPGPKDEDEDYIV 124 (164)
T ss_dssp CEEEEEEESCTTTCCHHH--HHHH----H-HTTCSS------CEEE-ECCHHHHHHHHHTTTCCE--EEEEECTTSCEEE
T ss_pred cEEEEEEEeCCCCCCHHH--HHHH----H-HHcCCC------eEEE-eCCHHHHHHHHHhcCeEE--EecCCCCCCCeeE
Confidence 89999999975321 111 2332 2 222221 1121 2332 45777888864 44
Q ss_pred ----EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 228 ----YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 228 ----YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
.+||||++|+|++...|..+++++. +.++.|++
T Consensus 125 ~~~~~~~lid~~G~i~~~~~g~~~~~~l~---~~l~~ll~ 161 (164)
T 2ggt_A 125 DHTIIMYLIGPDGEFLDYFGQNKRKGEIA---ASIATHMR 161 (164)
T ss_dssp EECCEEEEECTTSCEEEEEETTCCHHHHH---HHHHHHHG
T ss_pred eccceEEEECCCCeEEEEeCCCCCHHHHH---HHHHHHHH
Confidence 7999999999999999988886654 44445554
No 36
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=98.87 E-value=1.4e-08 Score=84.40 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=78.5
Q ss_pred cCccccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------
Q 024610 86 NKIIIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE--------- 156 (265)
Q Consensus 86 p~~l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e--------- 156 (265)
|-+..+...+..+|+|.+.+++|+++++.+ ++||+.||.+| ++||.||..
T Consensus 6 ~~~~~~~~~~~~~p~f~l~d~~G~~v~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~p~l~~l~ 64 (180)
T 3kij_A 6 HHMKFLKPKINSFYAFEVKDAKGRTVSLEK------------YKGKVSLVVNV---------ASDCQLTDRNYLGLKELH 64 (180)
T ss_dssp ----CCCCCCCCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHH
T ss_pred hhhhhhcCCcCcccceEEecCCCCEecHHH------------cCCCEEEEEEE---------ecCCCCcHHHHHHHHHHH
Confidence 345566777889999999999999998642 36998888555 899999873
Q ss_pred -hhccCCCeeEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-----HHHHHHhcccCCc
Q 024610 157 -AFSDSKNVHLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-----YYFRKELKILNLL 225 (265)
Q Consensus 157 -~~~~~~~vqiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-----~~iRe~Lgi~N~~ 225 (265)
.+. ..++++|.|++++ .--... ++.+.... .+++.. .+....+ .|.. ..+....+ .
T Consensus 65 ~~~~-~~~~~vi~is~d~~~~~~~d~~~~--~~~~~~~~--~~~~~~--~~~~~d~--~~~~~~~~~~~~~~~~~----~ 131 (180)
T 3kij_A 65 KEFG-PSHFSVLAFPCNQFGESEPRPSKE--VESFARKN--YGVTFP--IFHKIKI--LGSEGEPAFRFLVDSSK----K 131 (180)
T ss_dssp HHHT-TTSEEEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCSC--BBCCCCC--SSTTCCHHHHHHHHHHT----C
T ss_pred HHhc-cCCeEEEEEECCccccCCCCCHHH--HHHHHHHh--cCCCCc--eeeeeec--cCccccHHHHHHHhcCC----C
Confidence 222 2369999999764 000011 23331110 122210 0000000 1221 12222222 2
Q ss_pred ccE----EEEEeCCCcEEEcccCCCCHHHHH
Q 024610 226 TGY----IFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 226 vGY----VyLVD~~grIRWagsG~at~~E~e 252 (265)
++. +||||++|+|++...|..++++++
T Consensus 132 ~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~ 162 (180)
T 3kij_A 132 EPRWNFWKYLVNPEGQVVKFWRPEEPIEVIR 162 (180)
T ss_dssp CCSSTTCEEEECTTSCEEEEECTTCCGGGTH
T ss_pred CccccceEEEECCCCCEEEEECCCCCHHHHH
Confidence 444 899999999999999998887644
No 37
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=98.87 E-value=5.1e-09 Score=86.72 Aligned_cols=134 Identities=10% Similarity=0.148 Sum_probs=85.1
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
....|+|++.+.+|+++++.+. ..+||+.||.+ ++ ++||.+|.. .|. ..++
T Consensus 8 G~~aPdF~l~~~~G~~v~Lsd~----------~~~Gk~vvl~f-~~-------~~~cp~C~~e~~~l~~~~~~~~-~~~v 68 (164)
T 4gqc_A 8 GEKAPDFTLPNQDFEPVNLYEV----------LKRGRPAVLIF-FP-------AAFSPVCTKELCTFRDKMAQLE-KANA 68 (164)
T ss_dssp TSBCCCCEEEBTTSCEEEHHHH----------HHTSSCEEEEE-CS-------CTTCCEECSSCEESCCCGGGGG-GSSS
T ss_pred CCCCcCcEeECCCCCEEEHHHH----------hcCCCEEEEEE-eC-------CCCCCCcccchhhhhhhHHHhh-ccCc
Confidence 4568999999999999986532 11588877744 33 799998863 222 2479
Q ss_pred eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc--------ccEEEEEeCCC
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL--------TGYIFLLDKFG 236 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~--------vGYVyLVD~~g 236 (265)
++|.||.++... ++.+ .....- ...+ ..+....+-+++|+.+.. .+.+||||++|
T Consensus 69 ~vv~is~d~~~~-----~~~~-----~~~~~~------~fp~-l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G 131 (164)
T 4gqc_A 69 EVLAISVDSPWC-----LKKF-----KDENRL------AFNL-LSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDG 131 (164)
T ss_dssp EEEEEESSCHHH-----HHHH-----HHHTTC------CSEE-EECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTS
T ss_pred eEEEecCCCHHH-----HHHH-----HHhcCc------ccce-eecCchHHHHHcCCcccccccCcCCeeeEEEEECCCC
Confidence 999999875322 2332 121111 1222 246667889999985422 34589999999
Q ss_pred cEEEcccCCCCH--HHHHHHHHHHHhhhcC
Q 024610 237 RIRWQGFGMATP--EELSSLLSCTSLLLEG 264 (265)
Q Consensus 237 rIRWagsG~at~--~E~e~L~k~~~~Ll~e 264 (265)
+|||+.-|.... .+.+.+.+.++.|+.|
T Consensus 132 ~I~~~~~~~~~~~~~~~~eil~~l~~l~~e 161 (164)
T 4gqc_A 132 TVAYKWVTDNPLNEPDYDEVVREANKIAGE 161 (164)
T ss_dssp BEEEEEECSCTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 999987654322 2344555666666543
No 38
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.86 E-value=5.8e-08 Score=74.80 Aligned_cols=120 Identities=10% Similarity=0.082 Sum_probs=84.3
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEEE
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLYE 168 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv~ 168 (265)
...|++.+.+++|+++++.. +.||+.||.++ ++||.+|.. .....++++++.
T Consensus 3 ~~~p~~~~~~~~g~~~~l~~------------~~~k~~ll~f~---------~~~C~~C~~~~~~l~~~~~~~~~~~~~~ 61 (136)
T 1zzo_A 3 PAQLQFSAKTLDGHDFHGES------------LLGKPAVLWFW---------APWCPTCQGEAPVVGQVAASHPEVTFVG 61 (136)
T ss_dssp CGGGCCEEEBTTSCEEEGGG------------GTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCcccccCCCCEeeHHH------------hCCCeEEEEEE---------cCCChhHHHHHHHHHHHHHHcCCeEEEE
Confidence 34799999999999998653 25898888666 889998863 123334899999
Q ss_pred EecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCC
Q 024610 169 VSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMAT 247 (265)
Q Consensus 169 In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at 247 (265)
|+++++.- . ++.+ +++ +++. ..+ ..+....+.+.+|+.. ++.+||+|++|+|+ ...|..+
T Consensus 62 v~~~~~~~--~--~~~~----~~~~~~~~-------~~~-~~d~~~~~~~~~~i~~--~P~~~~id~~g~i~-~~~g~~~ 122 (136)
T 1zzo_A 62 VAGLDQVP--A--MQEF----VNKYPVKT-------FTQ-LADTDGSVWANFGVTQ--QPAYAFVDPHGNVD-VVRGRMS 122 (136)
T ss_dssp EECSSCHH--H--HHHH----HHHTTCTT-------SEE-EECTTCHHHHHTTCCS--SSEEEEECTTCCEE-EEESCCC
T ss_pred EeCCCCHH--H--HHHH----HHHcCCCc-------eEE-EEcCCcHHHHHcCCCC--CceEEEECCCCCEE-EEecCCC
Confidence 99976421 1 2222 222 2211 122 2366678889999975 99999999999999 8889888
Q ss_pred HHHHHHHH
Q 024610 248 PEELSSLL 255 (265)
Q Consensus 248 ~~E~e~L~ 255 (265)
.++++...
T Consensus 123 ~~~l~~~l 130 (136)
T 1zzo_A 123 QDELTRRV 130 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765444
No 39
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.86 E-value=1.7e-08 Score=83.46 Aligned_cols=134 Identities=20% Similarity=0.137 Sum_probs=87.8
Q ss_pred ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh------h-cc--CC
Q 024610 92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SD--SK 162 (265)
Q Consensus 92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~--~~ 162 (265)
......+|++.+++++|+++++.+ ++||+.||.++ .+||.+|... + .. ..
T Consensus 34 ~~~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~~~~~l~~l~~~~~~~ 92 (186)
T 1jfu_A 34 ASAPLKLPDLAFEDADGKPKKLSD------------FRGKTLLVNLW---------ATWCVPCRKEMPALDELQGKLSGP 92 (186)
T ss_dssp CCSCCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHCBT
T ss_pred ccCCCcCCCcEeEcCCCCEeeHHH------------cCCCEEEEEEE---------eCCCHhHHHHHHHHHHHHHHhccC
Confidence 344567899999999999998653 36899888665 7999988731 1 11 24
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccC--CcccEEEEEeCCCcEE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILN--LLTGYIFLLDKFGRIR 239 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N--~~vGYVyLVD~~grIR 239 (265)
++++|.|++++.-... ++.+ +.+ +++. ..++ .+....+-+.+++.. ..++.+||||++|+|+
T Consensus 93 ~~~vv~v~~d~~~~~~---~~~~----~~~~~~~~-------~~~~-~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~ 157 (186)
T 1jfu_A 93 NFEVVAINIDTRDPEK---PKTF----LKEANLTR-------LGYF-NDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEI 157 (186)
T ss_dssp TEEEEEEECCCSCTTH---HHHH----HHHTTCCT-------TCCE-ECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEE
T ss_pred CcEEEEEECCCCCHHH---HHHH----HHHcCCCC-------CceE-ECCcchHHHHhccccccCCCCEEEEECCCCCEE
Confidence 7999999998641111 2232 111 2211 1121 355567888888852 2489999999999999
Q ss_pred EcccCCCC--HHHHHHHHHHHHhhhcC
Q 024610 240 WQGFGMAT--PEELSSLLSCTSLLLEG 264 (265)
Q Consensus 240 WagsG~at--~~E~e~L~k~~~~Ll~e 264 (265)
+...|..+ .+| +.+.++.|+++
T Consensus 158 ~~~~g~~~~~~~~---l~~~l~~ll~~ 181 (186)
T 1jfu_A 158 ATIAGPAEWASED---ALKLIRAATGK 181 (186)
T ss_dssp EEEESCCCTTSHH---HHHHHHHHHC-
T ss_pred EEEecCCccCHHH---HHHHHHHHhcc
Confidence 99999864 344 44445556554
No 40
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.86 E-value=3.8e-08 Score=79.88 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=88.4
Q ss_pred cccccccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hhccCC
Q 024610 91 PALAAVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSK 162 (265)
Q Consensus 91 ka~~AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~ 162 (265)
+...+...|++.+.++ +|+++.... ..+||+.||-++ ++||.+|.. .+.+.
T Consensus 21 ~~~~G~~~P~f~l~~~~~~g~~~~~~~-----------~~~gk~vll~F~---------a~~C~~C~~~~~~l~~l~~~- 79 (168)
T 2b1k_A 21 SALIGKPVPKFRLESLDNPGQFYQADV-----------LTQGKPVLLNVW---------ATWCPTCRAEHQYLNQLSAQ- 79 (168)
T ss_dssp CTTTTSBCCCCEEEESSSTTCEEEGGG-----------GCCSSCEEEEEE---------CTTCHHHHHHHHHHHHHHHT-
T ss_pred ccccCCcCCCeEeecccCCCcEeehhH-----------hcCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHC-
Confidence 3445667999999999 899876432 236899988666 899999873 33334
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
+++++.|+++++.- . ++.+ +.. .+++. ... ..+....+-+.+|+.. ++.+||||++|+|++..
T Consensus 80 ~v~vv~v~~~~~~~--~--~~~~-~~~--~~~~~------~~~--~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~ 142 (168)
T 2b1k_A 80 GIRVVGMNYKDDRQ--K--AISW-LKE--LGNPY------ALS--LFDGDGMLGLDLGVYG--APETFLIDGNGIIRYRH 142 (168)
T ss_dssp TCCEEEEEESCCHH--H--HHHH-HHH--HCCCC------SEE--EEETTCHHHHHHTCCS--SSEEEEECTTSBEEEEE
T ss_pred CCEEEEEECCCChH--H--HHHH-HHH--cCCCC------cee--eECcchHHHHHcCccc--cCEEEEECCCCeEEEEE
Confidence 79999999877532 1 2332 111 12332 111 2355567889999985 99999999999999999
Q ss_pred cCCCCHHHHHHH
Q 024610 243 FGMATPEELSSL 254 (265)
Q Consensus 243 sG~at~~E~e~L 254 (265)
.|..++++++..
T Consensus 143 ~g~~~~~~l~~~ 154 (168)
T 2b1k_A 143 AGDLNPRVWEEE 154 (168)
T ss_dssp ESCCCHHHHHHT
T ss_pred eCCCCHHHHHHH
Confidence 999988877553
No 41
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.85 E-value=1.3e-08 Score=82.49 Aligned_cols=120 Identities=13% Similarity=0.255 Sum_probs=84.1
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeEE
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHLY 167 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqiv 167 (265)
...+|++.+.+++|+++++.+ ++||++||.+| ++||.+|... ....+++++|
T Consensus 14 g~~~p~~~l~~~~g~~~~l~~------------~~gk~~lv~F~---------~~~C~~C~~~~~~l~~l~~~~~~v~vv 72 (165)
T 3ha9_A 14 LEREASFSLTTIDGEVISLNN------------VGGDVVILWFM---------AAWCPSCVYMADLLDRLTEKYREISVI 72 (165)
T ss_dssp HHHHHCCCEEBTTSCEECGGG------------CCSSEEEEEEE---------CTTCTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred cCcCCCCEeecCCCCEeeHHH------------hCCCEEEEEEE---------CCCCcchhhhHHHHHHHHHHcCCcEEE
Confidence 456899999999999997653 36899999766 8999998731 2334589999
Q ss_pred EEecc------------------cchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccE
Q 024610 168 EVSFI------------------DSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY 228 (265)
Q Consensus 168 ~In~~------------------e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY 228 (265)
.|+++ ++.- . ++.+ +++ +++. ..+ ..+ ...+.+.+++.. ++.
T Consensus 73 ~i~~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~~----~~~~~~~~-------~~~-~~d-~~~~~~~~~v~~--~P~ 133 (165)
T 3ha9_A 73 AIDFWTAEALKALGLNKPGYPPPDTPE--M--FRKF----IANYGDPS-------WIM-VMD-DGSLVEKFNVRS--IDY 133 (165)
T ss_dssp EEECCSHHHHHHHTCCSTTSCCCCCHH--H--HHHH----HHHHSCTT-------SEE-EEC-CSHHHHHTTCCS--SSE
T ss_pred EEEecccccccccccccccCCCCCCHH--H--HHHH----HHHcCCCC-------eeE-EeC-hHHHHHHhCCCC--ceE
Confidence 99997 3211 1 2222 121 2211 222 235 678899999985 999
Q ss_pred EEEEeCCCcEEEcccCCC-CHHHHHHHHH
Q 024610 229 IFLLDKFGRIRWQGFGMA-TPEELSSLLS 256 (265)
Q Consensus 229 VyLVD~~grIRWagsG~a-t~~E~e~L~k 256 (265)
+||||++|+|++ .|.. +.++++.+.+
T Consensus 134 ~~lid~~G~i~~--~g~~~~~~~l~~~l~ 160 (165)
T 3ha9_A 134 IVIMDKSSNVLY--AGTTPSLGELESVIK 160 (165)
T ss_dssp EEEEETTCCEEE--EEESCCHHHHHHHHH
T ss_pred EEEEcCCCcEEE--eCCCCCHHHHHHHHH
Confidence 999999999999 7777 7777665543
No 42
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.85 E-value=3.3e-08 Score=78.59 Aligned_cols=122 Identities=12% Similarity=0.050 Sum_probs=84.4
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
+...|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .++
T Consensus 5 G~~~p~~~l~~~~g~~~~l~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~l~~~~~~-~~~ 62 (153)
T 2l5o_A 5 SKTAPAFSLPDLHGKTVSNAD------------LQGKVTLINFW---------FPSCPGCVSEMPKIIKTANDYKN-KNF 62 (153)
T ss_dssp CTTCCSCEEECTTSCEEEHHH------------HTTCEEEEEEE---------CTTCTTHHHHHHHHHHHHHHGGG-TTE
T ss_pred CCCCCCcEeecCCCCCccHHH------------hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHhcc-CCe
Confidence 456899999999999988642 25899888666 789998863 1222 369
Q ss_pred eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
+++.|+++..-... ++.+ +++ .+.. ..+ ..+....+.+.+|+.. ++.+||||++|+|++...|
T Consensus 63 ~vv~v~~~~~~~~~---~~~~----~~~-~~~~------~~~-~~d~~~~~~~~~~i~~--~P~~~lid~~G~i~~~~~g 125 (153)
T 2l5o_A 63 QVLAVAQPIDPIES---VRQY----VKD-YGLP------FTV-MYDADKAVGQAFGTQV--YPTSVLIGKKGEILKTYVG 125 (153)
T ss_dssp EEEEEECTTSCHHH---HHHH----HHH-TTCC------SEE-EECSSCHHHHHHTCCS--SSEEEEECSSSCCCEEEES
T ss_pred EEEEEecCCCCHHH---HHHH----HHH-cCCC------ceE-EcCchHHHHHHcCCCc--cCeEEEECCCCcEEEEEcC
Confidence 99999975332111 2332 222 2211 111 2455677899999975 9999999999999999999
Q ss_pred CCCHHHHHHHH
Q 024610 245 MATPEELSSLL 255 (265)
Q Consensus 245 ~at~~E~e~L~ 255 (265)
..+.+++....
T Consensus 126 ~~~~~~l~~~l 136 (153)
T 2l5o_A 126 EPDFGKLYQEI 136 (153)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88887765433
No 43
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=98.84 E-value=1.5e-08 Score=87.24 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=84.5
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS 161 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~ 161 (265)
..+...|+|.+.+++|+++++.+ ++|| +.||.++ ++||.+|.. .+.+
T Consensus 33 ~~G~~aP~f~l~~~~G~~v~l~~------------~~gk~~vll~F~---------a~~C~~C~~~~~~l~~l~~~~~~- 90 (218)
T 3u5r_E 33 TLGTRAADFVLPDAGGNLFTLAE------------FKDSPALLVAFI---------SNRCPFVVLIREALAKFAGDYAG- 90 (218)
T ss_dssp CTTCBCCCCCEECTTCCEECGGG------------GTTCSEEEEEEC---------CSSCHHHHTTHHHHHHHHHHHTT-
T ss_pred CCCCcCCCcEeECCCCCEEeHHH------------hCCCCeEEEEEE---------CCCCccHHHHHHHHHHHHHHHHh-
Confidence 34567899999999999997653 3588 4777444 799998862 2222
Q ss_pred CCeeEEEEecccch-----hhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCC
Q 024610 162 KNVHLYEVSFIDSW-----LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFG 236 (265)
Q Consensus 162 ~~vqiv~In~~e~~-----lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~g 236 (265)
.++++|.|++++.. .... ++.+ ... .+++ ..+ ..+....+.+.+|+.. ++.+||||++|
T Consensus 91 ~~v~vv~Vs~d~~~~~~~d~~~~--~~~~-~~~--~~~~--------~~~-l~D~~~~~~~~~~v~~--~P~~~liD~~G 154 (218)
T 3u5r_E 91 QGLAVVAINSNDAQAFPEETLER--VGAE-VKA--YGYG--------FPY-LKDASQSVAKAYGAAC--TPDFFLYDRER 154 (218)
T ss_dssp TTEEEEEEECSCTTTCGGGSHHH--HHHH-HHH--HTCC--------SCE-EECTTCHHHHHHTCCE--ESEEEEECTTC
T ss_pred CCcEEEEEECCcccccccCCHHH--HHHH-HHH--hCCC--------ccE-EECCccHHHHHcCCCC--CCeEEEECCCC
Confidence 35999999995210 0011 2332 111 1222 112 2466678999999985 89999999999
Q ss_pred cEEEcccC---------CCCHHHHHHHHHHHHhhhcC
Q 024610 237 RIRWQGFG---------MATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 237 rIRWagsG---------~at~~E~e~L~k~~~~Ll~e 264 (265)
+|+|.|.. ..+.++ |.+.++.|+++
T Consensus 155 ~i~~~g~~d~~~~~~~~~~~~~~---l~~~i~~ll~~ 188 (218)
T 3u5r_E 155 RLVYHGQFDDARPGNGKDVTGAD---LRAAVDAVLKG 188 (218)
T ss_dssp BEEEEECSSSCCTTSCCCCCCHH---HHHHHHHHHTT
T ss_pred cEEEeccccccccccccccCHHH---HHHHHHHHHcC
Confidence 99998642 233444 45555666653
No 44
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.83 E-value=5.3e-08 Score=77.93 Aligned_cols=108 Identities=18% Similarity=0.023 Sum_probs=76.0
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~~~~v 164 (265)
+...|++.+.+++|+++++.+ ++||+.||.++ ++||.+|... +. ..++
T Consensus 6 g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------a~~C~~C~~~~~~l~~l~~~~~-~~~~ 63 (152)
T 2lrn_A 6 GSVAPAITGIDLKGNSVSLND------------FKGKYVLVDFW---------FAGCSWCRKETPYLLKTYNAFK-DKGF 63 (152)
T ss_dssp TEECCCCEEECSSSCEEESGG------------GTTSEEEEEEE---------CTTCTTHHHHHHHHHHHHHHHT-TTTE
T ss_pred CCcCCCceeEcCCCCEEeHHH------------cCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHhc-cCCe
Confidence 345899999999999998653 35899888665 8999998731 22 2369
Q ss_pred eEEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCC---hHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGD---HYYFRKELKILNLLTGYIFLLDKFGRIRW 240 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~~vGYVyLVD~~grIRW 240 (265)
+++.|+++++.- . ++.+ +++ +.+. ..+ .+. ...+.+.+|+.. ++.+||||++|+|++
T Consensus 64 ~vv~v~~d~~~~-~---~~~~----~~~~~~~~-------~~~--~d~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~ 124 (152)
T 2lrn_A 64 TIYGVSTDRREE-D---WKKA----IEEDKSYW-------NQV--LLQKDDVKDVLESYCIVG--FPHIILVDPEGKIVA 124 (152)
T ss_dssp EEEEEECCSCHH-H---HHHH----HHHHTCCS-------EEE--EECHHHHHHHHHHTTCCS--SCEEEEECTTSEEEE
T ss_pred EEEEEEccCCHH-H---HHHH----HHHhCCCC-------eEE--ecccchhHHHHHHhCCCc--CCeEEEECCCCeEEE
Confidence 999999986421 1 2232 222 2332 111 244 577889999975 999999999999999
Q ss_pred ccc
Q 024610 241 QGF 243 (265)
Q Consensus 241 ags 243 (265)
...
T Consensus 125 ~~~ 127 (152)
T 2lrn_A 125 KEL 127 (152)
T ss_dssp ECC
T ss_pred eeC
Confidence 974
No 45
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.83 E-value=1.6e-08 Score=83.97 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=74.9
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCC-ee
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKN-VH 165 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~-vq 165 (265)
.+..+|+|.+.+++|+++++.+ ++||++||.++ ++||.+|... ....++ ++
T Consensus 9 ~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vlv~F~---------a~~C~~C~~~~~~l~~l~~~~~~~~~ 67 (188)
T 2cvb_A 9 LESPLIDAELPDPRGGRYRLSQ------------FHEPLLAVVFM---------CNHCPYVKGSIGELVALAERYRGKVA 67 (188)
T ss_dssp TTCBCCCCEEECTTSCEEEGGG------------CCSSEEEEEEE---------CSSCHHHHTTHHHHHHHHHHTTTTEE
T ss_pred CCCCCCCceeecCCCCEEeHHH------------hCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHhhcCeE
Confidence 3456899999999999998653 36899988666 8999988621 122222 99
Q ss_pred EEEEecccch-----hhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE
Q 024610 166 LYEVSFIDSW-----LLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 166 iv~In~~e~~-----lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR 239 (265)
+|.|++++.. .... ++.+ +++ +++ ..+ ..+....+.+.+|+.. ++.+||||++|+|+
T Consensus 68 ~v~v~~d~~~~~~~d~~~~--~~~~----~~~~~~~--------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~ 130 (188)
T 2cvb_A 68 FVGINANDYEKYPEDAPEK--MAAF----AEEHGIF--------FPY-LLDETQEVAKAYRALR--TPEVFLFDERRLLR 130 (188)
T ss_dssp EEEEECCCTTTCGGGSHHH--HHHH----HHHHTCC--------SCE-EECSSSHHHHHTTCCE--ESEEEEECTTCBEE
T ss_pred EEEEEcCccccccccCHHH--HHHH----HHHhCCC--------ceE-EECCcchHHHHcCCCC--CCeEEEECCCCcEE
Confidence 9999985310 0011 2232 111 222 112 2466677889999875 89999999999999
Q ss_pred Ecc
Q 024610 240 WQG 242 (265)
Q Consensus 240 Wag 242 (265)
+.|
T Consensus 131 ~~g 133 (188)
T 2cvb_A 131 YHG 133 (188)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
No 46
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=98.80 E-value=9.7e-09 Score=86.04 Aligned_cols=136 Identities=16% Similarity=0.047 Sum_probs=78.5
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
+..+|+|.+.+++|+++++.+ ++||+.||.+| ++||.||.. .+.+. ++
T Consensus 23 ~~~~p~f~l~d~~G~~~~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~p~l~~l~~~~~~~-~~ 80 (187)
T 3dwv_A 23 ASSIFDFEVLDADHKPYNLVQ------------HKGSPLLIYNV---------ASKCGYTKGGYETATTLYNKYKSQ-GF 80 (187)
T ss_dssp CCSGGGSCCBBTTSCBCCGGG------------GTTSCEEEEEE---------CCBCSCCTTHHHHHHHHHHHHGGG-TC
T ss_pred CCccCCeEEEcCCCCEeeHHH------------hCCCEEEEEEe---------cCCCCCcHHHHHHHHHHHHHhhhC-Ce
Confidence 356899999999999987642 46999888665 899998862 23333 69
Q ss_pred eEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-h----HHHHHHh-cccC-Cccc---EE
Q 024610 165 HLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-H----YYFRKEL-KILN-LLTG---YI 229 (265)
Q Consensus 165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~----~~iRe~L-gi~N-~~vG---YV 229 (265)
++|.|++++ ...... ++.+ +++..+..-..+.... .-+. . ..+++.. ++.. ..++ .+
T Consensus 81 ~vi~is~d~~~~~e~~~~~~--~~~~----~~~~~~~~~p~~~~~d--~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~ 152 (187)
T 3dwv_A 81 TVLAFPSNQFGGQEPGNEEE--IKEF----VCTKFKAEFPIMAKIN--VNGENAHPLYEYMKKTKPGILATKAIKWNFTS 152 (187)
T ss_dssp EEEEEEBCCCSSCSSSBTTH--HHHS----CCBCCCCSSCBBCCBC--CSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCE
T ss_pred EEEEEECcccCCCCCCCHHH--HHHH----HHhccCCCCceeeccc--cCCcchhHHHHHHHhhcCCccCCCccccceeE
Confidence 999999863 000011 1221 2211111100000000 0011 1 1223322 3222 2356 89
Q ss_pred EEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 230 FLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 230 yLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
||||++|+|++...|..++++++ +.++.||+
T Consensus 153 ~liD~~G~i~~~~~g~~~~~~l~---~~i~~lL~ 183 (187)
T 3dwv_A 153 FLIDRDGVPVERFSPGASVKDIE---EKLIPLLG 183 (187)
T ss_dssp EEECTTSCEEEEECTTCCHHHHH---HHHHHHC-
T ss_pred EEECCCCCEEEEECCCCCHHHHH---HHHHHHHh
Confidence 99999999999999998888754 44555554
No 47
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=98.79 E-value=2.5e-08 Score=82.66 Aligned_cols=126 Identities=12% Similarity=0.074 Sum_probs=80.7
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhHH-------hhccCCCee
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFFE-------AFSDSKNVH 165 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~e-------~~~~~~~vq 165 (265)
.....|+|.+.+++|+++++.+ ++||+.||.+| .+| |.+|.. .... ++++
T Consensus 20 ~G~~~P~f~l~~~~G~~v~l~~------------~~gk~vvl~F~---------~t~~C~~C~~~~~~l~~l~~~-~~v~ 77 (175)
T 1xvq_A 20 VGSPAPAFTLTGGDLGVISSDQ------------FRGKSVLLNIF---------PSVDTPVCATSVRTFDERAAA-SGAT 77 (175)
T ss_dssp TTSBCCCCEEECTTSCEEEGGG------------GTTSCEEEEEC---------SCCCSSCCCHHHHHHHHHHHH-TTCE
T ss_pred cCCcCCCeEEECCCCCEEeHHH------------cCCCEEEEEEE---------eCCCCchHHHHHHHHHHHHhh-cCCE
Confidence 3456899999999999998653 36898888555 788 887752 2233 7899
Q ss_pred EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-------cccEEEEEeCCCcE
Q 024610 166 LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-------LTGYIFLLDKFGRI 238 (265)
Q Consensus 166 iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-------~vGYVyLVD~~grI 238 (265)
+|.|++++... ++.+ .+..+. ....+ ..+....+-+.+|+... ..+.+||||++|+|
T Consensus 78 vv~Is~D~~~~-----~~~~-----~~~~~~-----~~~~~-l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I 141 (175)
T 1xvq_A 78 VLCVSKDLPFA-----QKRF-----CGAEGT-----ENVMP-ASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNV 141 (175)
T ss_dssp EEEEESSCHHH-----HTTC-----C-----------CEEE-EECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBE
T ss_pred EEEEECCCHHH-----HHHH-----HHHcCC-----CCceE-eeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeE
Confidence 99999965321 1111 011111 01222 23445678889998753 13789999999999
Q ss_pred EEcccC--CCCHHHHHHHHHH
Q 024610 239 RWQGFG--MATPEELSSLLSC 257 (265)
Q Consensus 239 RWagsG--~at~~E~e~L~k~ 257 (265)
+|...| .....+++.+.+.
T Consensus 142 ~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 142 AYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp EEEEECSBTTCCCCHHHHHHH
T ss_pred EEEEECCCcCCCCCHHHHHHH
Confidence 999874 3344455555443
No 48
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=98.77 E-value=3.5e-08 Score=85.39 Aligned_cols=138 Identities=13% Similarity=0.087 Sum_probs=85.6
Q ss_pred cccccCCCceeeCC-CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610 93 LAAVKFPDLDVSYS-DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS 159 (265)
Q Consensus 93 ~~AlyFPnl~~~~l-~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~ 159 (265)
.....+|+|.+.++ +| +++++.+ ++||+.||.+| + .+||.+|.. .+.
T Consensus 41 ~~G~~aP~f~l~~~~d~~G~~v~l~~------------~~Gk~vll~F~--a------~~wC~~C~~~~p~l~~l~~~~~ 100 (222)
T 3ztl_A 41 LPNRPAPEFKGQAVINGEFKEICLKD------------YRGKYVVLFFY--P------ADFTFVCPTEIIAFSDQVEEFN 100 (222)
T ss_dssp CSSEECCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC--S------CSSCSHHHHHHHHHHHTHHHHH
T ss_pred cCCCCCCCeEEecccCCCCcEEeHHH------------hCCCeEEEEEE--C------CCCCCchHHHHHHHHHHHHHHH
Confidence 34557899999866 44 8887653 36898888555 1 399998873 222
Q ss_pred cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCC
Q 024610 160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKF 235 (265)
Q Consensus 160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~ 235 (265)
..++++|-||+++..- ...+ ....++...... ....+ ..+....+-+.+|+... .++.+||||++
T Consensus 101 -~~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~~~~~---~~~~~-l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~ 169 (222)
T 3ztl_A 101 -SRNCQVIACSTDSQYS-----HLAW-DNLDRKSGGLGH---MKIPL-LADRKQEISKAYGVFDEEDGNAFRGLFIIDPN 169 (222)
T ss_dssp -TTTEEEEEEESSCHHH-----HHHH-HHSCGGGTSCCS---CSSCE-EECSSSHHHHHTTCBCTTTSSBCEEEEEECTT
T ss_pred -HCCCEEEEEECCCHHH-----HHHH-HHHhhhhccccc---cceeE-EeCCchHHHHHcCCeecCCCCccceEEEECCC
Confidence 2479999999975321 1222 222222111000 11222 24666789999999743 47889999999
Q ss_pred CcEEEcccCCCCHH-HHHHHHHHHHhh
Q 024610 236 GRIRWQGFGMATPE-ELSSLLSCTSLL 261 (265)
Q Consensus 236 grIRWagsG~at~~-E~e~L~k~~~~L 261 (265)
|+|+|...|..+.+ .++.+.+.++.|
T Consensus 170 G~I~~~~~g~~~~~~~~~~il~~l~~l 196 (222)
T 3ztl_A 170 GILRQITINDKPVGRSVDETLRLLDAF 196 (222)
T ss_dssp SEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 99999988875443 345555544443
No 49
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=98.77 E-value=5.2e-08 Score=82.68 Aligned_cols=133 Identities=8% Similarity=-0.028 Sum_probs=84.4
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH----------hhcc--CCC
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE----------AFSD--SKN 163 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e----------~~~~--~~~ 163 (265)
..|+|.+.+.+|+++++.+ ++||++||.++ .+||.| |.. .+.+ ..+
T Consensus 20 ~~p~f~l~d~~G~~v~l~~------------~~Gk~vlv~F~---------at~C~~vC~~~~~~l~~l~~~~~~~~~~~ 78 (200)
T 2b7k_A 20 LGGPFHLEDMYGNEFTEKN------------LLGKFSIIYFG---------FSNCPDICPDELDKLGLWLNTLSSKYGIT 78 (200)
T ss_dssp CCCCCEEEETTSCEEEGGG------------GTTSCEEEEEE---------CTTCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCEEEEcCCCCEEeHHH------------cCCCEEEEEEE---------CCCCcchhHHHHHHHHHHHHHHHHhhCCc
Confidence 4599999999999998652 36899888665 899998 862 1332 358
Q ss_pred eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC---hHHHHHHhcccCC--------------c
Q 024610 164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD---HYYFRKELKILNL--------------L 225 (265)
Q Consensus 164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~---~~~iRe~Lgi~N~--------------~ 225 (265)
+++|-|+++... .... ++.+ + +..+.. + ..+ .++ ...+-+.+|+... .
T Consensus 79 v~vv~Is~D~~~d~~~~--~~~~----~-~~~~~~----~-~~l--~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~ 144 (200)
T 2b7k_A 79 LQPLFITCDPARDSPAV--LKEY----L-SDFHPS----I-LGL--TGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDH 144 (200)
T ss_dssp CEEEEEESCTTTCCHHH--HHHH----H-TTSCTT----C-EEE--ECCHHHHHHHHHHTTC--------------CTTT
T ss_pred eEEEEEECCCCCCCHHH--HHHH----H-HHcCCC----c-eEE--eCCHHHHHHHHHHcCcEEeeccccCCCCCceeee
Confidence 999999998421 0111 2222 2 222211 1 111 233 2456677887621 2
Q ss_pred ccEEEEEeCCCcEEEcccCCCCHHH-HHHHHHHHHhhhcC
Q 024610 226 TGYIFLLDKFGRIRWQGFGMATPEE-LSSLLSCTSLLLEG 264 (265)
Q Consensus 226 vGYVyLVD~~grIRWagsG~at~~E-~e~L~k~~~~Ll~e 264 (265)
++.+||||++|+|++.-.|..++++ .+.+.+.++.|+.+
T Consensus 145 ~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~l~~~ 184 (200)
T 2b7k_A 145 SIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVPA 184 (200)
T ss_dssp CCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCCCC
T ss_pred cceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHhhhh
Confidence 3478999999999999988766655 45566667777655
No 50
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.77 E-value=8.8e-08 Score=75.00 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=85.2
Q ss_pred cccCCCcee--eCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCC-Ce
Q 024610 95 AVKFPDLDV--SYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSK-NV 164 (265)
Q Consensus 95 AlyFPnl~~--~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~-~v 164 (265)
+...|++.+ ++++|+++++.. ++||+.||.++ ++||.+|.. .+ ...+ .+
T Consensus 4 g~~~P~f~~~~~~~~g~~~~~~~------------~~gk~~lv~f~---------~~~C~~C~~~~~~l~~l~~~~~~~~ 62 (148)
T 2b5x_A 4 RQPMPELTGEKAWLNGEVTREQL------------IGEKPTLIHFW---------SISCHLCKEAMPQVNEFRDKYQDQL 62 (148)
T ss_dssp TCBCCCCCCCSEEESCCCCHHHH------------TTTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCccccccccCcccchhh------------cCCCEEEEEEE---------cCCCHHHHHHhHHHHHHHHHhcCCc
Confidence 345799987 678999886542 35899988666 889998863 11 1122 29
Q ss_pred eEEEEecccchhh-ccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 165 HLYEVSFIDSWLL-CRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 165 qiv~In~~e~~lk-~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
+++.|++++.--. ...-++.+ +.+ +++. . + ..+....+.+.+|+.- ++.+||+|++|+|++..
T Consensus 63 ~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~------~--~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~ 127 (148)
T 2b5x_A 63 NVVAVHMPRSEDDLDPGKIKET----AAEHDITQ------P--I-FVDSDHALTDAFENEY--VPAYYVFDKTGQLRHFQ 127 (148)
T ss_dssp EEEEEECCCSTTTSSHHHHHHH----HHHTTCCS------C--E-EECSSCHHHHHTCCCC--SSEEEEECTTCBEEEEE
T ss_pred EEEEEEcCCCccccCHHHHHHH----HHHcCCCc------c--e-EECCchhHHHHhCCCC--CCEEEEECCCCcEEEEe
Confidence 9999998752110 00002222 222 2221 1 2 2466678899999975 99999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcC
Q 024610 243 FGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 243 sG~at~~E~e~L~k~~~~Ll~e 264 (265)
.|..++++++. .++.|+++
T Consensus 128 ~g~~~~~~l~~---~l~~~l~~ 146 (148)
T 2b5x_A 128 AGGSGMKMLEK---RVNRVLAE 146 (148)
T ss_dssp ESCSTTHHHHH---HHHHHHTT
T ss_pred cCCCCHHHHHH---HHHHHHhc
Confidence 99887776554 34455543
No 51
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=8.6e-10 Score=88.98 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=86.7
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh---hcc--------CCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA---FSD--------SKN 163 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~~~--------~~~ 163 (265)
+...|++.+.+++|+++++.+ ++||+.||.++ ++||.+|... +.+ ..+
T Consensus 10 g~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~f~---------a~~C~~C~~~~~~l~~~l~~~~~~~~~ 68 (159)
T 2ls5_A 10 GEMAPDFTITLTDGKQVTLSS------------LRGKVVMLQFT---------ASWCGVCRKEMPFIEKDIWLKHKDNAD 68 (159)
Confidence 446799999999999987642 35898888555 8899998631 222 357
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEccc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWags 243 (265)
+++|.|+++++.- . ++.+ .+..+. ...+ ..+....+.+.+|+.-.-++.+||||++|+|++...
T Consensus 69 ~~vv~v~~d~~~~--~--~~~~-----~~~~~~------~~~~-~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~ 132 (159)
T 2ls5_A 69 FALIGIDRDEPLE--K--VLAF-----AKSTGV------TYPL-GLDPGADIFAKYALRDAGITRNVLIDREGKIVKLTR 132 (159)
Confidence 9999999876421 1 1222 111111 1111 235556788888865445889999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhhc
Q 024610 244 GMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 244 G~at~~E~e~L~k~~~~Ll~ 263 (265)
|. ++++++.+.+.+..+..
T Consensus 133 g~-~~~~l~~~l~~l~~~~~ 151 (159)
T 2ls5_A 133 LY-NEEEFASLVQQINEMLK 151 (159)
Confidence 85 56677766666555543
No 52
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=98.75 E-value=9.2e-08 Score=79.07 Aligned_cols=128 Identities=14% Similarity=0.081 Sum_probs=77.7
Q ss_pred cccCC-CceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcc-hhH----------Hhhcc-C
Q 024610 95 AVKFP-DLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSS-PFF----------EAFSD-S 161 (265)
Q Consensus 95 AlyFP-nl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~-p~~----------e~~~~-~ 161 (265)
+..+| +|.+.+.+|+++++.+ ++||+.||.++ .+||. +|. +.+.. .
T Consensus 4 G~~~P~~f~l~d~~G~~v~l~~------------~~Gk~vll~F~---------~t~C~~~C~~~~~~l~~~~~~~~~~~ 62 (170)
T 3me7_A 4 GTYVPGDITLVDSYGNEFQLKN------------LKGKPIILSPI---------YTHCRAACPLITKSLLKVIPKLGTPG 62 (170)
T ss_dssp TCBCCTTCEEEETTCCEEEGGG------------GTTSCEEEEEE---------CTTCCSHHHHHHHHHHTTHHHHCCBT
T ss_pred CCcCCCCeEEEcCCcCEEchHH------------hCCCEEEEEEE---------CCCCCchhHHHHHHHHHHHHHhhhcC
Confidence 45689 9999999999998653 36899888666 88996 465 23322 3
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhccc-------CCcccEEEE
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKIL-------NLLTGYIFL 231 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~-------N~~vGYVyL 231 (265)
.++++|-|+++..-.... ++.+ .... +.+.. .|.. + ..++. ..+-+++|+. -..++.+||
T Consensus 63 ~~~~vv~is~d~~d~~~~--~~~~-~~~~--~~~~~---~w~~-l-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 132 (170)
T 3me7_A 63 KDFWVITFTFDPKDTLED--IKRF-QKEY--GIDGK---GWKV-V-KAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVV 132 (170)
T ss_dssp TTBEEEEEECCTTCCHHH--HHHH-HHHT--TCCSS---SEEE-E-EESSHHHHHHHHHHTTCCCEEETTEEECCCEEEE
T ss_pred CceEEEEEECCCCCCHHH--HHHH-HHHc--CCCCC---CeEE-E-eCCCHHHHHHHHHHCCeEEecCCCccccCceEEE
Confidence 579999999973101111 2332 1111 12111 0211 1 12443 4455555543 234678999
Q ss_pred EeCCCcEEEcccCC-CCHHHHHH
Q 024610 232 LDKFGRIRWQGFGM-ATPEELSS 253 (265)
Q Consensus 232 VD~~grIRWagsG~-at~~E~e~ 253 (265)
||++|+||+.-.|. .+++|+..
T Consensus 133 ID~~G~i~~~~~g~~~~~~~i~~ 155 (170)
T 3me7_A 133 LSPELQIKDYIYGVNYNYLEFVN 155 (170)
T ss_dssp ECTTSBEEEEEESSSCCHHHHHH
T ss_pred ECCCCeEEEEEeCCCCCHHHHHH
Confidence 99999999888886 44555443
No 53
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=98.74 E-value=2.5e-08 Score=81.78 Aligned_cols=125 Identities=8% Similarity=-0.033 Sum_probs=79.7
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeEE
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHLY 167 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqiv 167 (265)
...+|++.+.+.+|+++++.+ ++||+.||.+|. .+||.+|.. ......++++|
T Consensus 20 G~~~P~f~l~~~~G~~v~l~~------------~~gk~vvl~f~~--------~~~c~~C~~e~~~l~~~~~~~~~v~vv 79 (165)
T 1q98_A 20 GEIVENFILVGNDLADVALND------------FASKRKVLNIFP--------SIDTGVCATSVRKFNQQAAKLSNTIVL 79 (165)
T ss_dssp TCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEECS--------CSCSSCCCHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCCCeEEECCCCCEEehHH------------hCCCeEEEEEEC--------CCCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 446899999999999998653 368987775541 689887752 12222689999
Q ss_pred EEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCC-------cccEEEEEeCCCcEE
Q 024610 168 EVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNL-------LTGYIFLLDKFGRIR 239 (265)
Q Consensus 168 ~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~-------~vGYVyLVD~~grIR 239 (265)
-|++++... ++.+ .+..+ +....+ ..+. ...+-+++|+... .++.+||||++|+||
T Consensus 80 ~Is~d~~~~-----~~~~-----~~~~~-----~~~~~~-l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~ 143 (165)
T 1q98_A 80 CISADLPFA-----QARF-----CGAEG-----IENAKT-VSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVL 143 (165)
T ss_dssp EEESSCHHH-----HTTC-----TTTTT-----CTTEEE-EECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEE
T ss_pred EEeCCCHHH-----HHHH-----HHHcC-----CCceEE-eeccccchHHHHhCceecccccCCccceeEEEEcCCCEEE
Confidence 999865321 1111 11111 101222 2354 5778899998642 368999999999999
Q ss_pred EcccCC--CCHHHHHHHH
Q 024610 240 WQGFGM--ATPEELSSLL 255 (265)
Q Consensus 240 WagsG~--at~~E~e~L~ 255 (265)
+...|+ ....+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~l 161 (165)
T 1q98_A 144 HSQLVEEIKEEPNYEAAL 161 (165)
T ss_dssp EEEECSBTTSCCCHHHHH
T ss_pred EEEeCCCCCCCCCHHHHH
Confidence 999763 3333444443
No 54
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=98.73 E-value=4e-08 Score=83.95 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=77.4
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-------hhccCCCeeE
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-------AFSDSKNVHL 166 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-------~~~~~~~vqi 166 (265)
.+...|+|.+.+.+|+++++.+ ++||+.||.+| . .+||.+|.. ...+..++++
T Consensus 54 ~G~~aPdf~l~d~~G~~v~L~d------------~~Gk~vvl~F~--~------~~~c~~C~~e~~~l~~l~~~~~~v~v 113 (200)
T 3zrd_A 54 IGDKAKDFTLVAKDLSDVALSS------------FAGKRKVLNIF--P------SIDTGVCAASVRKFNQLAGELENTVV 113 (200)
T ss_dssp TTCBCCCCEEECTTSCEEEGGG------------GTTSEEEEEEC--S------CCCCSCCCHHHHHHHHHHHTSTTEEE
T ss_pred CCCCCCCeEEECCCCCEEcHHH------------hCCCcEEEEEE--C------CCCCchhHHHHHHHHHHHHHhCCCEE
Confidence 4557899999999999998653 36898777554 1 578887752 2233368999
Q ss_pred EEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCC-------cccEEEEEeCCCcE
Q 024610 167 YEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNL-------LTGYIFLLDKFGRI 238 (265)
Q Consensus 167 v~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~-------~vGYVyLVD~~grI 238 (265)
|.|+.++... ++.+ .+..+ +....+ ..+. ...+-+++|+... .++.+||||++|+|
T Consensus 114 v~Is~D~~~~-----~~~~-----~~~~~-----~~~f~~-l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I 177 (200)
T 3zrd_A 114 LCISSDLPFA-----QSRF-----CGAEG-----LSNVIT-LSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNV 177 (200)
T ss_dssp EEEESSCHHH-----HTTC-----TTTTT-----CTTEEE-EETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBE
T ss_pred EEEECCCHHH-----HHHH-----HHHcC-----CCCceE-EecCchHHHHHHhCceeecccCCCccccEEEEECCCCeE
Confidence 9999875321 1111 11111 101222 2355 5789999999743 36899999999999
Q ss_pred EEcccCC
Q 024610 239 RWQGFGM 245 (265)
Q Consensus 239 RWagsG~ 245 (265)
+|+.-|.
T Consensus 178 ~~~~~~~ 184 (200)
T 3zrd_A 178 IYSELVN 184 (200)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 9998665
No 55
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=98.72 E-value=9.1e-08 Score=77.47 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=78.1
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcch-hHH------h-hccCC-----C
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSP-FFE------A-FSDSK-----N 163 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p-~~e------~-~~~~~-----~ 163 (265)
..|++.+.+++| ++++.+ ++||+.||.++ .+||.| |.. . ....+ +
T Consensus 15 ~~p~f~l~~~~g-~~~l~~------------~~gk~vll~f~---------~~~C~~~C~~~~~~l~~~~~~~~~~~~~~ 72 (172)
T 2k6v_A 15 KPVDFALEGPQG-PVRLSQ------------FQDKVVLLFFG---------FTRCPDVCPTTLLALKRAYEKLPPKAQER 72 (172)
T ss_dssp EECCCEEECSSS-EEEGGG------------STTSEEEEEEE---------CTTCSSHHHHHHHHHHHHHTTSCHHHHTT
T ss_pred CCCCeEEEcCCC-CCcHHH------------hCCCEEEEEEE---------CCCCcchhHHHHHHHHHHHHHhhhhccCC
Confidence 379999999999 987652 36899888655 899998 863 1 22222 7
Q ss_pred eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh---HHHHHHhcccC-------------Ccc
Q 024610 164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH---YYFRKELKILN-------------LLT 226 (265)
Q Consensus 164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~---~~iRe~Lgi~N-------------~~v 226 (265)
+++|-|++++.. .... ++.+ +++ .+. ...+ ..++. ..+-+++|+.. ..+
T Consensus 73 v~vv~is~d~~~d~~~~--~~~~----~~~-~~~------~~~~-l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~ 138 (172)
T 2k6v_A 73 VQVIFVSVDPERDPPEV--ADRY----AKA-FHP------SFLG-LSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHT 138 (172)
T ss_dssp EEEEEEESCTTTCCHHH--HHHH----HHH-HCT------TEEE-ECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEEC
T ss_pred EEEEEEEECCCCCCHHH--HHHH----HHH-hCC------CcEE-EeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecC
Confidence 999999997532 1111 2222 122 111 1222 23554 46777888642 247
Q ss_pred cEEEEEeCCCcEEEcccCCC--CHHHHHH
Q 024610 227 GYIFLLDKFGRIRWQGFGMA--TPEELSS 253 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG~a--t~~E~e~ 253 (265)
+.+|||| +|+|++...|.. +++++..
T Consensus 139 P~~~lid-~G~i~~~~~g~~~~~~~~l~~ 166 (172)
T 2k6v_A 139 ATTFVVK-EGRLVLLYSPDKAEATDRVVA 166 (172)
T ss_dssp CCEEEEE-TTEEEEEECHHHHTCHHHHHH
T ss_pred CEEEEEE-CCEEEEEECCCCCCCHHHHHH
Confidence 8999999 999999999887 6655543
No 56
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=98.71 E-value=6.4e-08 Score=78.22 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=79.2
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
.+..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .+
T Consensus 8 ~g~~~p~f~l~~~~g~~~~l~~------------~~gk~vll~f~---------a~~C~~C~~~~~~l~~l~~~~~~-~~ 65 (170)
T 2p5q_A 8 NPESVHDFTVKDAKENDVDLSI------------FKGKVLLIVNV---------ASKCGMTNSNYAEMNQLYEKYKD-QG 65 (170)
T ss_dssp --CCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GT
T ss_pred CCccccceEEEcCCCCEecHHH------------hCCCEEEEEEE---------eccCCccHHHHHHHHHHHHHhcc-CC
Confidence 3456899999999999998653 36899888665 899999863 2222 36
Q ss_pred eeEEEEeccc-----chhhccccchHHHHHHHH-h-cCCCCCccccceeEEEcCCh----HHHH-----HHhcccCCccc
Q 024610 164 VHLYEVSFID-----SWLLCRSPIKRILLKIMR-K-SKDAGENVLQRQIVYSFGDH----YYFR-----KELKILNLLTG 227 (265)
Q Consensus 164 vqiv~In~~e-----~~lk~~~~lk~~~~~~lr-k-~~p~~~~~l~~~~~y~~g~~----~~iR-----e~Lgi~N~~vG 227 (265)
+++|.|++++ .-.... ++.+ ++ + +++.. .+. ..+.. ..+- +..|+....++
T Consensus 66 ~~vv~vs~d~~~~~~~~~~~~--~~~~----~~~~~~~~~~--~~~-----~~d~~~~~~~~~~~~l~~~~~~~~~~~~p 132 (170)
T 2p5q_A 66 LEILAFPCNQFGEEEPGTNDQ--ITDF----VCTRFKSEFP--IFD-----KIDVNGENASPLYRFLKLGKWGIFGDDIQ 132 (170)
T ss_dssp EEEEEEECCTTTTCCCSCHHH--HHHH----HHHHTCCCSC--BBC-----CCBSSSTTBCHHHHHHHTHHHHTTCSCCC
T ss_pred EEEEEEECCCCCCCCCCCHHH--HHHH----HHHhcCCCce--eEe-----eeccCCCchHHHHHHHHhcCCCccCCccc
Confidence 9999999863 000011 2332 22 1 22210 010 00111 1111 12355222356
Q ss_pred ---EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 228 ---YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 228 ---YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
.+||||++|+|++...|..++++++ +.++.|+++
T Consensus 133 ~~~~~~lid~~G~i~~~~~g~~~~~~l~---~~i~~ll~~ 169 (170)
T 2p5q_A 133 WNFAKFLVNKDGQVVDRYYPTTSPLSLE---RDIKQLLEI 169 (170)
T ss_dssp STTCEEEECTTSCEEEEECTTSCGGGGH---HHHHHHTTC
T ss_pred ccccEEEECCCCCEEEeeCCCCCHHHHH---HHHHHHhhc
Confidence 8999999999999999988887654 445556654
No 57
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=98.71 E-value=7.9e-08 Score=77.60 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=79.1
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
+..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .++
T Consensus 8 g~~~p~f~l~~~~G~~~~l~~------------~~gk~vlv~f~---------a~~C~~C~~~~~~l~~l~~~~~~-~~~ 65 (169)
T 2v1m_A 8 WNSIYEFTVKDINGVDVSLEK------------YRGHVCLIVNV---------ACKCGATDKNYRQLQEMHTRLVG-KGL 65 (169)
T ss_dssp CCSGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTE
T ss_pred CcccccceeecCCCCCccHHH------------cCCCEEEEEEe---------eccCCchHHHHHHHHHHHHHhhc-CCe
Confidence 456899999999999998653 36899888666 899999862 2222 369
Q ss_pred eEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEE-cCChH--------HHHHH-hccc---CCcc
Q 024610 165 HLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDHY--------YFRKE-LKIL---NLLT 226 (265)
Q Consensus 165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~~--------~iRe~-Lgi~---N~~v 226 (265)
++|.|++++ ...... ++.++... .+++. .++. .+... .+++. .|+. -..+
T Consensus 66 ~vv~v~~d~~~~~~~~~~~~--~~~~~~~~--~~~~~--------~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 133 (169)
T 2v1m_A 66 RILAFPCNQFGGQEPWAEAE--IKKFVTEK--YGVQF--------DMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWN 133 (169)
T ss_dssp EEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCS--------EEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCST
T ss_pred EEEEEECCccCCCCCCCHHH--HHHHHHHh--cCCCC--------ceEEEEeecCccccHHHHHHHhhcCCccCCccccc
Confidence 999999863 111111 22221111 12221 1110 11111 11111 1432 1235
Q ss_pred cEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 227 GYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
+.+||||++|+|++...|..+++++ .+.++.||++
T Consensus 134 P~~~lid~~G~i~~~~~g~~~~~~l---~~~i~~ll~~ 168 (169)
T 2v1m_A 134 FSKFLVDRQGQPVKRYSPTTAPYDI---EGDIMELLEK 168 (169)
T ss_dssp TCEEEECTTSCEEEEECTTSCGGGG---HHHHHHHHHC
T ss_pred ceEEEECCCCCEEEEcCCCCCHHHH---HHHHHHHhcc
Confidence 7899999999999999998887664 4445556554
No 58
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=98.69 E-value=5.2e-08 Score=81.86 Aligned_cols=117 Identities=9% Similarity=0.022 Sum_probs=76.9
Q ss_pred cccCCCceeeCC-CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610 95 AVKFPDLDVSYS-DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS 161 (265)
Q Consensus 95 AlyFPnl~~~~l-~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~ 161 (265)
....|+|.+.++ +| +++++.+ ++||+.||.+| + .+||.+|.. .+.+
T Consensus 4 G~~aP~f~l~~~~~G~~~~v~l~~------------~~Gk~vvl~F~--~------~~~Cp~C~~e~~~l~~~~~~~~~- 62 (186)
T 1n8j_A 4 NTKIKPFKNQAFKNGEFIEVTEKD------------TEGRWSVFFFY--P------ADFTFVSPTELGDVADHYEELQK- 62 (186)
T ss_dssp TCBCCCCEEEEEETTEEEEEEHHH------------HTTSEEEEEEC--S------CTTCSHHHHHHHHHHHHHHHHHH-
T ss_pred CCcCCCcEeecccCCcceEEEHHH------------HCCCeEEEEEE--C------CCCCCccHHHHHHHHHHHHHHHH-
Confidence 456899999998 59 8887642 36898777544 1 589998862 2322
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhcCCC-CCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA-GENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG 236 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~-~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g 236 (265)
.++++|-|++++... ++.+ +++ .+. +. ....+ ..+....+-+++|+... .++.+||||++|
T Consensus 63 ~~v~vv~Is~d~~~~-----~~~~----~~~-~~~~~~---~~fp~-l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G 128 (186)
T 1n8j_A 63 LGVDVYSVSTDTHFT-----HKAW----HSS-SETIAK---IKYAM-IGDPTGALTRNFDNMREDEGLADRATFVVDPQG 128 (186)
T ss_dssp TTEEEEEEESSCHHH-----HHHH----HHH-CTTGGG---CCSEE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred CCCEEEEEECCCHHH-----HHHH----HHH-cCcccC---CceeE-EECCchHHHHHhCCccCCCCceeeEEEEECCCC
Confidence 479999999875321 2332 122 210 00 11222 24656778899998742 378999999999
Q ss_pred cEEEcccCCC
Q 024610 237 RIRWQGFGMA 246 (265)
Q Consensus 237 rIRWagsG~a 246 (265)
+||+...|..
T Consensus 129 ~i~~~~~~~~ 138 (186)
T 1n8j_A 129 IIQAIEVTAE 138 (186)
T ss_dssp BEEEEEEECT
T ss_pred eEEEEEecCC
Confidence 9999988764
No 59
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.68 E-value=9.3e-08 Score=79.50 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=82.9
Q ss_pred ccccCCCceee-CCCCCeeeccCCCCCCccCccccCCCce-EEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610 94 AAVKFPDLDVS-YSDRTTLKLPVCSSGDVANADKAAIPKV-SLVCLTFRASSQAMVDSWSSPFFE----------AFSDS 161 (265)
Q Consensus 94 ~AlyFPnl~~~-~l~G~tl~~p~~~~~~~~~t~~~l~gKv-SIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~ 161 (265)
.+...|++.+. +++|+++++.+ ++||+ .||.++ ++||.+|.. .+.+
T Consensus 20 ~g~~~p~f~l~~~~~G~~~~l~~------------~~gk~~vlv~F~---------a~~C~~C~~~~~~l~~l~~~~~~- 77 (196)
T 2ywi_A 20 LGKQAPPFALTNVIDGNVVRLED------------VKSDAATVIMFI---------CNHCPFVKHVQHELVRLANDYMP- 77 (196)
T ss_dssp TTCBCCCCEEEETTTCCEEEHHH------------HCCSSEEEEEEC---------CSSCHHHHHHHHHHHHHHHHHGG-
T ss_pred cCCcCCceeeeecCCCCEEeHHH------------hCCCCeEEEEEe---------CCCCccHHHHHHHHHHHHHHHHh-
Confidence 34568999999 99999998653 35775 666444 899998863 2222
Q ss_pred CCeeEEEEecccch-----hhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCC
Q 024610 162 KNVHLYEVSFIDSW-----LLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKF 235 (265)
Q Consensus 162 ~~vqiv~In~~e~~-----lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~ 235 (265)
.++++|.|++++.. .... ++.+ +++ +++ ..+ ..+....+.+.+++.. ++.+||||++
T Consensus 78 ~~v~vv~v~~d~~~~~~~d~~~~--~~~~----~~~~~~~--------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~ 140 (196)
T 2ywi_A 78 KGVSFVAINSNDAEQYPEDSPEN--MKKV----AEELGYP--------FPY-LYDETQEVAKAYDAAC--TPDFYIFDRD 140 (196)
T ss_dssp GTCEEEEEECSCTTTCGGGSHHH--HHHH----HHHHTCC--------SCE-EECSSCHHHHHHTCCE--ESEEEEEETT
T ss_pred CCcEEEEEECCccccccccCHHH--HHHH----HHHcCCC--------ceE-EECCchHHHHHhCCCC--CCeEEEEcCC
Confidence 26999999995311 0011 2332 121 222 112 2466677889999875 8999999999
Q ss_pred CcEEEcc---------cCCCCHHHHHHHHHHHHhhhc
Q 024610 236 GRIRWQG---------FGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 236 grIRWag---------sG~at~~E~e~L~k~~~~Ll~ 263 (265)
|+|+|.+ .|..++++++. .++.|++
T Consensus 141 G~i~~~~~~~~~~~~~~g~~~~~~l~~---~i~~ll~ 174 (196)
T 2ywi_A 141 LKCVYRGQLDDSRPNNGIPVTGESIRA---ALDALLE 174 (196)
T ss_dssp CBEEEEECSSSCCTTTCCCCCCHHHHH---HHHHHHH
T ss_pred CeEEEccccCcccccccCccCHHHHHH---HHHHHHc
Confidence 9999995 45556666544 4444544
No 60
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=98.68 E-value=7.7e-08 Score=83.74 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=84.8
Q ss_pred cccccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh
Q 024610 93 LAAVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF 158 (265)
Q Consensus 93 ~~AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~ 158 (265)
.....+|+|.+.++ +| +++++.+ .++||+.||.+| . ++||.+|.. .|
T Consensus 26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d-----------~~~Gk~vvl~F~--p------atwCp~C~~e~p~l~~l~~~~ 86 (221)
T 2c0d_A 26 LVTKKAYNFTAQGLNKNNEIINVDLSS-----------FIGQKYCCLLFY--P------LNYTFVCPTEIIEFNKHIKDF 86 (221)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGG-----------GTTTCEEEEEEC--C------CCTTTCCHHHHHHHHHTHHHH
T ss_pred CCCCCCCCeEEeccccCCCccEEeHHH-----------HcCCCeEEEEEE--c------CCCCCchHHHHHHHHHHHHHH
Confidence 44567899999998 99 8887542 126898777444 2 789998763 22
Q ss_pred ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhccc---CCcccEEEEEeCC
Q 024610 159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKIL---NLLTGYIFLLDKF 235 (265)
Q Consensus 159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~---N~~vGYVyLVD~~ 235 (265)
.+ .++++|.|++++... ++.+ ....++...-+. ....+ ..+....+-+++|+. ...++.+||||++
T Consensus 87 ~~-~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~ 155 (221)
T 2c0d_A 87 EN-KNVELLGISVDSVYS-----HLAW-KNMPIEKGGIGN---VEFTL-VSDINKDISKNYNVLYDNSFALRGLFIIDKN 155 (221)
T ss_dssp HH-TTEEEEEEESSCHHH-----HHHH-HHSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTEECEEEEEECTT
T ss_pred HH-CCCEEEEEeCCCHHH-----HHHH-HHHhhhhcCccC---CceEE-EECCchHHHHHcCCcccCCCccceEEEECCC
Confidence 22 579999999965321 2222 211211100000 11222 245567788999985 1147899999999
Q ss_pred CcEEEcccCCCC-HHHHHHHHHHHHhhh
Q 024610 236 GRIRWQGFGMAT-PEELSSLLSCTSLLL 262 (265)
Q Consensus 236 grIRWagsG~at-~~E~e~L~k~~~~Ll 262 (265)
|+|||...|..+ +...+.+.+.++.|+
T Consensus 156 G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 156 GCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp SBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 999999877532 223344444444444
No 61
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=98.68 E-value=1.2e-07 Score=81.44 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=43.4
Q ss_pred ccccCCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 94 AAVKFPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 94 ~AlyFPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
.+..+|+|.+.+++ |+++++.+ ++||+.||.+| +|||.||.+ .+.+ .
T Consensus 22 ~~~~~p~f~l~~~~~G~~v~l~~------------~~Gk~vlv~Fw---------atwC~~C~~e~p~l~~l~~~~~~-~ 79 (208)
T 2f8a_A 22 SMQSVYAFSARPLAGGEPVSLGS------------LRGKVLLIENV---------ASLGGTTVRDYTQMNELQRRLGP-R 79 (208)
T ss_dssp CCCCGGGCEECBTTCSSCEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-G
T ss_pred hcCccCceEeeeCCCCCCccHHH------------cCCCEEEEEEE---------CCCCccHHHHHHHHHHHHHHccC-C
Confidence 34568999999999 99998652 46998888555 899999863 1222 3
Q ss_pred CeeEEEEecc
Q 024610 163 NVHLYEVSFI 172 (265)
Q Consensus 163 ~vqiv~In~~ 172 (265)
++++|.|+++
T Consensus 80 g~~vv~v~~d 89 (208)
T 2f8a_A 80 GLVVLGFPCN 89 (208)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEECC
Confidence 6999999986
No 62
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.67 E-value=7.6e-08 Score=76.16 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=77.0
Q ss_pred ccccCCC-ceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 94 AAVKFPD-LDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 94 ~AlyFPn-l~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
.+..+|+ +.+.+++|+++++.+ ++||+.||-++ ++||.+|.. .+.+..
T Consensus 3 ~~~~~P~~f~l~~~~g~~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~ 61 (144)
T 1i5g_A 3 LKKFFPYSTNVLKGAAADIALPS------------LAGKTVFFYFS---------ASWCPPSRAFTPQLIDFYKAHAEKK 61 (144)
T ss_dssp TTTSCSSCSEEEETTEEEEEGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhCCCceEEEcCCCCEecHHH------------cCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhccCC
Confidence 3457899 999999999998653 35898888655 899999862 233335
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEe-CCCcEEEc
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD-KFGRIRWQ 241 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWa 241 (265)
++++|.|+++++.- . ++.+ .+..++. ...+...+....+.+.+|+.. ++.+||+| ++|+|++.
T Consensus 62 ~~~vv~v~~d~~~~--~--~~~~-----~~~~~~~-----~~~~~~~d~~~~~~~~~~v~~--~P~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 62 NFEVMLISWDESAE--D--FKDY-----YAKMPWL-----ALPFEDRKGMEFLTTGFDVKS--IPTLVGVEADSGNIITT 125 (144)
T ss_dssp TEEEEEEECCSSHH--H--HHHH-----HTTCSSE-----ECCTTCHHHHHHHHHHTTCCS--SSEEEEEETTTCCEEES
T ss_pred CEEEEEEeCCCCHH--H--HHHH-----HHhCCcc-----ccccCchHHHHHHHHHcCCCC--CCEEEEEECCCCcEEec
Confidence 89999999986421 1 2222 2222321 111100122467889999875 99999999 99999998
Q ss_pred ccC
Q 024610 242 GFG 244 (265)
Q Consensus 242 gsG 244 (265)
..+
T Consensus 126 ~~~ 128 (144)
T 1i5g_A 126 QAR 128 (144)
T ss_dssp CHH
T ss_pred cch
Confidence 754
No 63
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=98.66 E-value=8.3e-08 Score=82.60 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred cccCCCceeeCC---CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610 95 AVKFPDLDVSYS---DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS 161 (265)
Q Consensus 95 AlyFPnl~~~~l---~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~ 161 (265)
...+|+|.+.++ +|+++++.+ ++||+.||. ||. ++||.+|.. .|.+
T Consensus 22 G~~aP~f~l~~~~~~~g~~v~l~d------------~~Gk~vvl~--F~p------at~C~~C~~e~~~l~~l~~~~~~- 80 (211)
T 2pn8_A 22 SMPAPYWEGTAVIDGEFKELKLTD------------YRGKYLVFF--FYP------LDFTFVCPTEIIAFGDRLEEFRS- 80 (211)
T ss_dssp SCBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEE--ECS------CTTSSHHHHHHHHHHHTHHHHHT-
T ss_pred CCcCCCeEeecccCCCCcEEEHHH------------hCCCeEEEE--EEC------CCCCCCCHHHHHHHHHHHHHHHH-
Confidence 446899998875 457887542 368987764 442 789998862 2222
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhc--CCCCCccccceeEEEcCChHHHHHHhcccC----CcccEEEEEeCC
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKS--KDAGENVLQRQIVYSFGDHYYFRKELKILN----LLTGYIFLLDKF 235 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~--~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----~~vGYVyLVD~~ 235 (265)
.++++|-|++++... ++.+ ....++. +.. ....+ ..+....+-+++|+.. ..++.+||||++
T Consensus 81 ~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~-----~~fp~-l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~ 148 (211)
T 2pn8_A 81 INTEVVACSVDSQFT-----HLAW-INTPRRQGGLGP-----IRIPL-LSDLTHQISKDYGVYLEDSGHTLRGLFIIDDK 148 (211)
T ss_dssp TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS-----CSSCE-EECTTSHHHHHTTCEETTTTEECEEEEEECTT
T ss_pred CCCEEEEEECCCHHH-----HHHH-HHHhhhccCccC-----CceEE-EECCchHHHHHcCCcccCCCcccceEEEECCC
Confidence 589999999965321 2222 1111110 111 11222 2355678899999963 248899999999
Q ss_pred CcEEEcccCCCCH-HHHHHHHHHHHhhh
Q 024610 236 GRIRWQGFGMATP-EELSSLLSCTSLLL 262 (265)
Q Consensus 236 grIRWagsG~at~-~E~e~L~k~~~~Ll 262 (265)
|+||+...|..+. ...+.+.+.++.|+
T Consensus 149 G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 149 GILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp SBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9999998775322 23344444444443
No 64
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=98.65 E-value=1.4e-07 Score=83.10 Aligned_cols=132 Identities=12% Similarity=0.002 Sum_probs=84.2
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhh-cchhH-----H---hhccC-CC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSW-SSPFF-----E---AFSDS-KN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw-~~p~~-----e---~~~~~-~~ 163 (265)
.....|+|.+.+.+|+++++.+ ++||+.||.+| .+| |.+|. . .|.+. .+
T Consensus 24 vG~~APdFtL~d~~G~~vsLsd------------~~Gk~vVL~F~---------ps~~cp~C~~~~~~~El~~~~~~~~g 82 (224)
T 3keb_A 24 KGDYLPSFMLVDDQKHDAALES------------FSHTPKLIVTL---------LSVDEDEHAGLLLLRETRRFLDSWPH 82 (224)
T ss_dssp TTCBCCCCEEEETTSCEEEGGG------------GTTCCEEEEEC---------SCTTCSTTTSHHHHHHHHHHHTTCTT
T ss_pred CCCCCCCeEEECCCCCEEeHHH------------hCCCcEEEEEE---------eCCCCCCCCCCccHHHHHHHHHHcCC
Confidence 3456899999999999998653 36898777554 566 66666 2 33333 78
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHHHhcccCCc-------ccEEEEEeCC
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRKELKILNLL-------TGYIFLLDKF 235 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe~Lgi~N~~-------vGYVyLVD~~ 235 (265)
+++|-||.++-.. .+.| .. +.+++. ..+ ..|. ...+-+++|+.... ++++||||++
T Consensus 83 v~VvgIS~Ds~~~-----~~~f-~~--~~gl~~-------fpl-LsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~d 146 (224)
T 3keb_A 83 LKLIVITVDSPSS-----LARA-RH--EHGLPN-------IAL-LSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAA 146 (224)
T ss_dssp SEEEEEESSCHHH-----HHHH-HH--HHCCTT-------CEE-EESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTT
T ss_pred CEEEEEECCCHHH-----HHHH-HH--HcCCCC-------ceE-EEcCCchHHHHHhCCccccccccCCccCEEEEEcCC
Confidence 9999999875321 2332 11 112221 222 2354 47899999997543 7899999999
Q ss_pred CcEEEcccCCCC--HHHHHHHHHHHHhhh
Q 024610 236 GRIRWQGFGMAT--PEELSSLLSCTSLLL 262 (265)
Q Consensus 236 grIRWagsG~at--~~E~e~L~k~~~~Ll 262 (265)
|+|||.+-+... .-+.+.+.+.++.|.
T Consensus 147 G~I~~~~~~~~~~~~pd~~evl~~L~~l~ 175 (224)
T 3keb_A 147 NVVHYSERLANTRDFFDFDAIEKLLQEGE 175 (224)
T ss_dssp CBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence 999998765422 223444555555554
No 65
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.63 E-value=3e-07 Score=73.77 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=79.2
Q ss_pred eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH------hh-cc--CCCeeEEEEecc
Q 024610 102 DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD--SKNVHLYEVSFI 172 (265)
Q Consensus 102 ~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~--~~~vqiv~In~~ 172 (265)
.+.+++|+++++.. .+||+.||.++ ++||.+|.. .+ .. .+++++|.|+++
T Consensus 22 ~l~~~~g~~~~~~~------------~~gk~vlv~F~---------a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~ 80 (164)
T 2h30_A 22 TMKTADNRPASVYL------------KKDKPTLIKFW---------ASWCPLCLSELGQAEKWAQDAKFSSANLITVASP 80 (164)
T ss_dssp TCEETTSSBGGGGC------------CTTSCEEEEEC---------CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECT
T ss_pred ccCCCCCCEeeHHH------------hCCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcC
Confidence 56678899887542 35899888665 899999873 12 22 357999999986
Q ss_pred cchhhc-cccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHH
Q 024610 173 DSWLLC-RSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEE 250 (265)
Q Consensus 173 e~~lk~-~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E 250 (265)
+.--.. ...++.+ +.+ .++. ..+ ..+....+.+.+++.- ++.+||+|++|+|++...|..+.++
T Consensus 81 ~~~~~~~~~~~~~~----~~~~~~~~-------~~~-~~d~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~~ 146 (164)
T 2h30_A 81 GFLHEKKDGEFQKW----YAGLNYPK-------LPV-VTDNGGTIAQNLNISV--YPSWALIGKDGDVQRIVKGSINEAQ 146 (164)
T ss_dssp TSTTCCCTTHHHHH----HTTSCCTT-------SCE-EECTTCHHHHHTTCCS--SSEEEEECTTSCEEEEEESCCCHHH
T ss_pred CCccccCHHHHHHH----HHhCCCCc-------ceE-EEcCchHHHHHcCCCc--cceEEEECCCCcEEEEEcCCCCHHH
Confidence 421100 0002222 221 1110 111 2466678899999975 9999999999999999999998887
Q ss_pred HHHHHH
Q 024610 251 LSSLLS 256 (265)
Q Consensus 251 ~e~L~k 256 (265)
++.+.+
T Consensus 147 l~~~i~ 152 (164)
T 2h30_A 147 ALALIR 152 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 66
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.62 E-value=1.8e-07 Score=78.57 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=83.0
Q ss_pred cccCCCceeeCCC-------------C--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---
Q 024610 95 AVKFPDLDVSYSD-------------R--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE--- 156 (265)
Q Consensus 95 AlyFPnl~~~~l~-------------G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e--- 156 (265)
+..+|+|.+.+++ | +++++.+ ++||+.||.++ . ++||.+|..
T Consensus 7 G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~------------~~gk~vvl~F~--~------a~~C~~C~~~~~ 66 (195)
T 2bmx_A 7 GDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDE------------HPGKWRVVFFW--P------KDFTFVCPTEIA 66 (195)
T ss_dssp TCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTS------------STTCEEEEEEC--S------CTTSCCCHHHHH
T ss_pred CCcCCCcCcccccccccccccccccCCCccEeeHHH------------hCCCcEEEEEE--c------CCCCCCcHHHHH
Confidence 4568999999888 6 6776542 36898777544 1 789998863
Q ss_pred -------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---cc
Q 024610 157 -------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---LT 226 (265)
Q Consensus 157 -------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---~v 226 (265)
.+.+ .++++|.|++++.-. ++.+ +++...... ....+ ..+....+.+.+|+... .+
T Consensus 67 ~l~~l~~~~~~-~~v~vv~Vs~d~~~~-----~~~~----~~~~~~~~~---~~~~~-~~d~~~~~~~~~~v~~~~g~~~ 132 (195)
T 2bmx_A 67 AFSKLNDEFED-RDAQILGVSIDSEFA-----HFQW----RAQHNDLKT---LPFPM-LSDIKRELSQAAGVLNADGVAD 132 (195)
T ss_dssp HHHHTHHHHHT-TTEEEEEEESSCHHH-----HHHH----HHHCTTGGG---CCSCE-EECTTSHHHHHHTCBCTTSSBC
T ss_pred HHHHHHHHHHH-CCCEEEEEECCCHHH-----HHHH----HHHhccccC---CceeE-EeCCchHHHHHhCCcccCCCcc
Confidence 2222 379999999976211 2332 111100000 11222 23556778899998722 48
Q ss_pred cEEEEEeCCCcEEEcccCCCC-HHHHHHHHHHHHhhh
Q 024610 227 GYIFLLDKFGRIRWQGFGMAT-PEELSSLLSCTSLLL 262 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG~at-~~E~e~L~k~~~~Ll 262 (265)
+.+||||++|+|++...|... +...+.|.+.++.|+
T Consensus 133 P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 133 RVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ 169 (195)
T ss_dssp EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999988641 123344445555554
No 67
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=98.61 E-value=2.6e-07 Score=76.86 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=77.1
Q ss_pred cccCCCceeeCCCCC----eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610 95 AVKFPDLDVSYSDRT----TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD 160 (265)
Q Consensus 95 AlyFPnl~~~~l~G~----tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~ 160 (265)
+..+|+|.+.+++|+ ++++.+ ++||++||.++ . ++||.+|.. .+.+
T Consensus 4 G~~~P~f~l~~~~g~~~~~~~~l~~------------~~gk~vvl~F~--~------a~~C~~C~~~~~~l~~~~~~~~~ 63 (187)
T 1we0_A 4 GTEVQPFRAQAFQSGKDFFEVTEAD------------LKGKWSIVVFY--P------ADFSFVCPTELEDVQKEYAELKK 63 (187)
T ss_dssp TCBCCCCEEEEECSSSCCEEEETTT------------TSSSEEEEEEC--S------CTTCSSCTHHHHHHHHHHHHHHH
T ss_pred CCcCCCeEEeccCCCccceEecHHH------------HCCCCEEEEEE--C------CCCCcchHHHHHHHHHHHHHHHH
Confidence 346899999999999 887542 36898877443 2 789998752 2222
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHH--hcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeC
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMR--KSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDK 234 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lr--k~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~ 234 (265)
.++++|.|++++.-. ++.+ ..... ...+ ..+ ..+....+.+.+|+... .++.+||||+
T Consensus 64 -~~v~vv~vs~d~~~~-----~~~~-~~~~~~~~~~~--------~~~-~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~ 127 (187)
T 1we0_A 64 -LGVEVYSVSTDTHFV-----HKAW-HENSPAVGSIE--------YIM-IGDPSQTISRQFDVLNEETGLADRGTFIIDP 127 (187)
T ss_dssp -TTEEEEEEESSCHHH-----HHHH-HHSCHHHHTCC--------SEE-EECTTCHHHHHTTCEETTTTEECEEEEEECT
T ss_pred -cCCEEEEEECCCHHH-----HHHH-HHHhccccCCC--------ceE-EECCchHHHHHhCCCcCCCCceeeEEEEECC
Confidence 379999999976321 2222 11110 0111 222 23556778899998732 4889999999
Q ss_pred CCcEEEcccCCC
Q 024610 235 FGRIRWQGFGMA 246 (265)
Q Consensus 235 ~grIRWagsG~a 246 (265)
+|+|++...|..
T Consensus 128 ~G~i~~~~~g~~ 139 (187)
T 1we0_A 128 DGVIQAIEINAD 139 (187)
T ss_dssp TSBEEEEEEECT
T ss_pred CCeEEEEEecCC
Confidence 999999988864
No 68
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=98.61 E-value=2.1e-07 Score=77.28 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=77.6
Q ss_pred ccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-------Hhhc-cCCC
Q 024610 92 ALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-------EAFS-DSKN 163 (265)
Q Consensus 92 a~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-------e~~~-~~~~ 163 (265)
.......|+|+++|.+|+++++.+ ++||+.||.++++ .+.+||.++. +.+. ...+
T Consensus 6 ~P~~~~~PdF~L~d~~G~~v~l~d------------~~Gk~vll~F~~t-----~Cp~~Cp~~~~~l~~l~~~~~~~~~~ 68 (170)
T 4hde_A 6 KPLNWDLETFQFTNQDGKPFGTKD------------LKGKVWVADFMFT-----NCQTVCPPMTANMAKLQKMAKEEKLD 68 (170)
T ss_dssp SCCCBCCCCCEEECTTSCEEEHHH------------HTTSCEEEEEECT-----TCSSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCcCCCcEEECCCCCEEeHHH------------hCCCEEEEEEECC-----CCCCcccHHHHHHHHHHHhhhccccc
Confidence 334556899999999999998652 4799999977632 1123333322 2333 2357
Q ss_pred eeEEEEecccch-hhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-hHHHHH----HhcccC--------CcccEE
Q 024610 164 VHLYEVSFIDSW-LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-HYYFRK----ELKILN--------LLTGYI 229 (265)
Q Consensus 164 vqiv~In~~e~~-lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~~~iRe----~Lgi~N--------~~vGYV 229 (265)
+++|-|+++... .... ++.+ .+....... -+ +.+ -|. ..++.+ ..+..- .+++.+
T Consensus 69 v~~v~isvDp~~Dtp~~--l~~y-----~~~~~~~~~-~~-~~l--tg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~ 137 (170)
T 4hde_A 69 VQFVSFSVDPDLDKPEN--LKAF-----IQKFTEDTS-NW-NLL--TGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSF 137 (170)
T ss_dssp CEEEEEESCTTTCCHHH--HHHH-----HTTTCSCCT-TE-EEE--BCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEE
T ss_pred ceeEeeecCcccccHHH--HHHH-----HHHcCCCCC-Cc-eec--CcccHHHHHHHHHhcccccccCCCCceEEeeeEE
Confidence 999999997422 1111 2332 121111100 01 111 132 233322 222211 145689
Q ss_pred EEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 230 FLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 230 yLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
||||++|+||+.-.|... .+.+.|.+-++.|++
T Consensus 138 ~liD~~G~i~~~~~g~~~-~~~~~l~~~ik~Lle 170 (170)
T 4hde_A 138 YLIDQNGKVMKKYSGISN-TPYEDIIRDMKRLAE 170 (170)
T ss_dssp EEECTTSCEEEEEESSSS-CCHHHHHHHHHHHHC
T ss_pred EEEcCCCeEEEEECCCCC-CCHHHHHHHHHHHhC
Confidence 999999999966555332 224556667777764
No 69
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=98.61 E-value=5.6e-08 Score=80.84 Aligned_cols=132 Identities=14% Similarity=0.016 Sum_probs=75.2
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
+..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .++
T Consensus 26 g~~~p~f~l~~~~G~~~~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~p~l~~l~~~~~~-~~v 83 (181)
T 2p31_A 26 EQDFYDFKAVNIRGKLVSLEK------------YRGSVSLVVNV---------ASECGFTDQHYRALQQLQRDLGP-HHF 83 (181)
T ss_dssp -CCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTE
T ss_pred CCccCceEeecCCCCEecHHH------------cCCCEEEEEEe---------ccCCCCcHHHHHHHHHHHHHhhc-CCE
Confidence 456899999999999998652 36898888665 899999873 2222 369
Q ss_pred eEEEEecccch-----hhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHHHHHhcccCCccc-------EEEE
Q 024610 165 HLYEVSFIDSW-----LLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYFRKELKILNLLTG-------YIFL 231 (265)
Q Consensus 165 qiv~In~~e~~-----lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~iRe~Lgi~N~~vG-------YVyL 231 (265)
++|.|++++.. .... ++.++... .+++.. .+.... .-+.. ..+-. .++. .+| .+||
T Consensus 84 ~vv~vs~d~~~~~e~~~~~~--~~~~~~~~--~~~~~p--~~~~~d--~~g~~~~~~~~-~~~~--~~P~~~~~~~~~~l 152 (181)
T 2p31_A 84 NVLAFPCNQFGQQEPDSNKE--IESFARRT--YSVSFP--MFSKIA--VTGTGAHPAFK-YLAQ--TSGKEPTWNFWKYL 152 (181)
T ss_dssp EEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCSC--BBCCCC--CSSTTSCHHHH-HHHH--HHSCCCCSTTCEEE
T ss_pred EEEEEECcCCCCCCCCCHHH--HHHHHHhh--cCCCce--eEeecc--cCCccchhhhh-hhhh--cCCCccccceeEEE
Confidence 99999986310 0011 23331110 122210 000000 00110 10100 1111 245 7999
Q ss_pred EeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610 232 LDKFGRIRWQGFGMATPEELSSLLSCTSLLL 262 (265)
Q Consensus 232 VD~~grIRWagsG~at~~E~e~L~k~~~~Ll 262 (265)
||++|+|++...|..++++++ +.++.||
T Consensus 153 id~~G~i~~~~~g~~~~~~l~---~~i~~ll 180 (181)
T 2p31_A 153 VAPDGKVVGAWDPTVSVEEVR---PQITALV 180 (181)
T ss_dssp ECTTSCEEEEECTTSCHHHHH---HHHHTTC
T ss_pred EcCCCCEEEEeCCCCCHHHHH---HHHHHHh
Confidence 999999999999988887654 4444454
No 70
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=98.61 E-value=5.6e-08 Score=79.69 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=75.1
Q ss_pred ccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccCCCeeE
Q 024610 96 VKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDSKNVHL 166 (265)
Q Consensus 96 lyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~~~vqi 166 (265)
..+|++.+++++|+++++.+ ++||+.||.++ ++||.||.+ .+.+ .++++
T Consensus 10 ~~~~~f~l~d~~G~~~~l~~------------~~Gk~vll~F~---------a~wC~~C~~~~~l~~l~~~~~~-~~v~v 67 (171)
T 3cmi_A 10 SEFYKLAPVDKKGQPFPFDQ------------LKGKVVLIVNV---------ASKCGFTPQYKELEALYKRYKD-EGFTI 67 (171)
T ss_dssp CGGGGCCCBBTTSCBCCGGG------------GTTCEEEEEEE---------ESSSCCHHHHHHHHHHHHHHGG-GTEEE
T ss_pred hheeeeEEEcCCCCEecHHH------------cCCCEEEEEEE---------ecCCCcchhHHHHHHHHHHhcc-CCeEE
Confidence 35799999999999987652 36899888665 899999872 1222 36999
Q ss_pred EEEecc-------cchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCC-h---HH--HHHHhcccCCccc------
Q 024610 167 YEVSFI-------DSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGD-H---YY--FRKELKILNLLTG------ 227 (265)
Q Consensus 167 v~In~~-------e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~-~---~~--iRe~Lgi~N~~vG------ 227 (265)
|.|+++ ++. .. ++.++... .+++. ..+.... .-+. . +. ..+..|+.. ++
T Consensus 68 v~vs~d~~~~~~~d~~--~~--~~~~~~~~--~~~~~--p~~~d~d--~~~~~~~~~~~~~~~~~~~v~~--~P~i~~~~ 135 (171)
T 3cmi_A 68 IGFPCNQFGHQEPGSD--EE--IAQFCQLN--YGVTF--PIMKKID--VNGGNEDPVYKFLKSQKSGMLG--LRGIKWNF 135 (171)
T ss_dssp EEEEECSCC------------------------CCCS--CBBCCCB--SSSTTBCHHHHHHHHHSCCSSS--CCSCCSTT
T ss_pred EEEECcccCCCCCCCH--HH--HHHHHHhc--cCCCc--eEEeecc--CCCccchHHHHHHHhccCCcCC--CCcccccc
Confidence 999985 211 11 22221010 01111 0000000 0000 0 11 112345553 66
Q ss_pred EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 228 YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 228 YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
.+||||++|+|++...|..++++++. .++.|+++
T Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~l~~---~i~~ll~~ 169 (171)
T 3cmi_A 136 EKFLVDKKGKVYERYSSLTKPSSLSE---TIEELLKE 169 (171)
T ss_dssp CEEEECSSSCEEEEECTTSCGGGGHH---HHHHHHTC
T ss_pred eEEEECCCCCEEEEeCCCCCHHHHHH---HHHHHHHh
Confidence 89999999999999999988877544 44445543
No 71
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=98.61 E-value=2.2e-07 Score=78.21 Aligned_cols=136 Identities=13% Similarity=0.090 Sum_probs=83.6
Q ss_pred cccCCCceeeCC-CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccC
Q 024610 95 AVKFPDLDVSYS-DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDS 161 (265)
Q Consensus 95 AlyFPnl~~~~l-~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~ 161 (265)
...+|+|.+.++ +| +++++.+ ++||+.||.+ +. ++||.+|.. .+. .
T Consensus 8 G~~aP~f~l~~~~~g~~~~v~l~~------------~~gk~vvl~F--~~------a~~C~~C~~~~~~l~~l~~~~~-~ 66 (197)
T 1qmv_A 8 GKPAPDFKATAVVDGAFKEVKLSD------------YKGKYVVLFF--YP------LDFTFVAPTEIIAFSNRAEDFR-K 66 (197)
T ss_dssp TSBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEE--CS------CTTSSHHHHHHHHHHHTHHHHH-T
T ss_pred CCCCCCeEeEeecCCCccEEEHHH------------HCCCeEEEEE--EC------CCCCCCCHHHHHHHHHHHHHHH-H
Confidence 456899999987 88 8887653 3689877644 32 789998863 222 2
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCCc
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFGR 237 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~gr 237 (265)
.++++|.|++++.-- ...+ +...++...-.. ....+ ..+....+.+.+|+... .++.+||||++|+
T Consensus 67 ~~v~vv~Is~d~~~~-----~~~~-~~~~~~~~~~~~---~~~p~-l~D~~~~~~~~~gv~~~~~~~~~P~~~lid~~G~ 136 (197)
T 1qmv_A 67 LGCEVLGVSVDSQFT-----HLAW-INTPRKEGGLGP---LNIPL-LADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGV 136 (197)
T ss_dssp TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSCE-EECTTCHHHHHTTCEETTTTEECEEEEEECTTSB
T ss_pred CCCEEEEEECCCHHH-----HHHH-HHHHHhhCCCCC---CceEE-EECCcHHHHHHcCCccCCCCceeeEEEEECCCCc
Confidence 479999999976321 1222 111111110000 11122 24556778899999743 3788999999999
Q ss_pred EEEcccCCCC-HHHHHHHHHHHHhh
Q 024610 238 IRWQGFGMAT-PEELSSLLSCTSLL 261 (265)
Q Consensus 238 IRWagsG~at-~~E~e~L~k~~~~L 261 (265)
|++...|..+ +...+.+.+.++.|
T Consensus 137 i~~~~~g~~~~~~~~~e~l~~l~~l 161 (197)
T 1qmv_A 137 LRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp EEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 9999888644 22334444444444
No 72
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=98.59 E-value=2.7e-07 Score=78.06 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=78.2
Q ss_pred ccccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610 94 AAVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS 159 (265)
Q Consensus 94 ~AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~ 159 (265)
.+..+|+|.+.+. +| +++++.+ ++||+.||.++ . .+||.+|.. .+.
T Consensus 8 ~G~~aP~f~l~~~~~~g~~~~v~l~~------------~~gk~vvl~F~--~------~~~C~~C~~~~~~l~~l~~~~~ 67 (202)
T 1uul_A 8 DLHPAPDFNETALMPNGTFKKVALTS------------YKGKWLVLFFY--P------MDFTFVCPTEICQFSDRVKEFS 67 (202)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGG------------GTTSEEEEEEC--S------CTTCSHHHHHHHHHHHTHHHHH
T ss_pred CCCcCCCcEeeeeecCCCccEEEHHH------------hCCCeEEEEEE--C------CCCCCcCHHHHHHHHHHHHHHH
Confidence 3556899999887 78 8887653 36898777443 2 789998862 222
Q ss_pred cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCC
Q 024610 160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKF 235 (265)
Q Consensus 160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~ 235 (265)
..++++|.|++++... ++.+ ....++.-+... ....+ ..+....+-+.+|+... .++.+||||++
T Consensus 68 -~~~v~vi~Is~D~~~~-----~~~~-~~~~~~~~~~~~---~~~p~-l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~ 136 (202)
T 1uul_A 68 -DIGCEVLACSMDSEYS-----HLAW-TSIERKRGGLGQ---MNIPI-LADKTKCIMKSYGVLKEEDGVAYRGLFIIDPK 136 (202)
T ss_dssp -TTTEEEEEEESSCHHH-----HHHH-HHSCGGGTCCCS---CSSCE-EECTTCHHHHHHTCEETTTTEECEEEEEECTT
T ss_pred -HCCCEEEEEeCCCHHH-----HHHH-HHHHHhhCCCCC---CceeE-EECCchHHHHHcCCccCCCCceeeEEEEECCC
Confidence 2579999999975321 2222 111111111000 11222 23556788899998732 48889999999
Q ss_pred CcEEEcccCCCC
Q 024610 236 GRIRWQGFGMAT 247 (265)
Q Consensus 236 grIRWagsG~at 247 (265)
|+|++...|..+
T Consensus 137 G~i~~~~~g~~~ 148 (202)
T 1uul_A 137 QNLRQITVNDLP 148 (202)
T ss_dssp SBEEEEEEECTT
T ss_pred CEEEEEEeCCCC
Confidence 999999877644
No 73
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=98.59 E-value=2.1e-07 Score=75.39 Aligned_cols=127 Identities=9% Similarity=0.052 Sum_probs=80.5
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc--eEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK--VSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK--vSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
...+|+|.+.+.+|+++++.+. +|| +.||.+| + .+||.+|.. .+.+.
T Consensus 10 G~~~P~f~l~~~~G~~v~l~~~------------~gk~~~vvl~f~-~-------~~~c~~C~~~~~~l~~~~~~~~~~- 68 (159)
T 2a4v_A 10 GDPIPDLSLLNEDNDSISLKKI------------TENNRVVVFFVY-P-------RASTPGSTRQASGFRDNYQELKEY- 68 (159)
T ss_dssp TCBCCSCEEECTTSCEEEHHHH------------HHHCSEEEEEEC-S-------SSSSHHHHHHHHHHHHHHHHHTTT-
T ss_pred CCCCCCeEEECCCCCEEeHHHH------------hCCCCeEEEEEc-C-------CCCCCCHHHHHHHHHHHHHHHHhC-
Confidence 4568999999999999986532 355 5555332 3 789998862 23333
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc----ccEEEEEeCCCcE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL----TGYIFLLDKFGRI 238 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~----vGYVyLVD~~grI 238 (265)
+ ++|-|++++.-. ++.+ ... .+++ ..+ ..+....+-+.+|+...- ...+||| ++|+|
T Consensus 69 ~-~vv~is~d~~~~-----~~~~-~~~--~~~~--------~~~-l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i 129 (159)
T 2a4v_A 69 A-AVFGLSADSVTS-----QKKF-QSK--QNLP--------YHL-LSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKL 129 (159)
T ss_dssp C-EEEEEESCCHHH-----HHHH-HHH--HTCS--------SEE-EECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEE
T ss_pred C-cEEEEeCCCHHH-----HHHH-HHH--hCCC--------ceE-EECCccHHHHHhCCcccccCCccceEEEE-cCCEE
Confidence 4 999999875221 2332 111 1222 222 235567788999997521 2279999 99999
Q ss_pred EEcccCCCCHHHHHHHHHHHHhh
Q 024610 239 RWQGFGMATPEELSSLLSCTSLL 261 (265)
Q Consensus 239 RWagsG~at~~E~e~L~k~~~~L 261 (265)
|+...|..++...+.+.+-+..+
T Consensus 130 ~~~~~g~~~~~~~~~~~~~l~~~ 152 (159)
T 2a4v_A 130 KFKRVKISPEVSVNDAKKEVLEV 152 (159)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEccCCccccHHHHHHHHHHH
Confidence 99999987665544444443333
No 74
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=98.59 E-value=1.4e-07 Score=78.95 Aligned_cols=135 Identities=16% Similarity=0.042 Sum_probs=77.8
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
+..+|+|.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .++
T Consensus 25 ~~~~p~f~l~~~~G~~~~l~~------------~~Gk~vll~F~---------atwC~~C~~~~~~l~~l~~~~~~-~~v 82 (190)
T 2vup_A 25 ASSIFDFEVLDADHKPYNLVQ------------HKGSPLLIYNV---------ASKCGYTKGGYETATTLYNKYKS-QGF 82 (190)
T ss_dssp CCSGGGSCCBBTTSSBCCGGG------------GTTSCEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTC
T ss_pred CCcccCeEEEcCCCCEEEHHH------------cCCCEEEEEEe---------cCCCCccHHHHHHHHHHHHHHhc-CCe
Confidence 456899999999999987642 36899888665 899999852 2332 369
Q ss_pred eEEEEecccc-----hhhccccchHHHHHHHHhcCCCCCccccceeEEEcCCh-HHHH-----HHhcccCCccc------
Q 024610 165 HLYEVSFIDS-----WLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDH-YYFR-----KELKILNLLTG------ 227 (265)
Q Consensus 165 qiv~In~~e~-----~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~-~~iR-----e~Lgi~N~~vG------ 227 (265)
++|.|++++. ..... ++.++... .+++.. .+.... .-+.. ..+- +..|+.. ++
T Consensus 83 ~vv~vs~d~~~~~~~~~~~~--~~~~~~~~--~~~~~p--~l~~~D--~~~~~~~~~~~~l~~~~~~v~~--~P~i~~~~ 152 (190)
T 2vup_A 83 TVLAFPCNQFGGQEPGNEEE--IKEFVCTK--FKAEFP--IMAKIN--VNGENAHPLYEYMKKTKPGILK--TKAIKWNF 152 (190)
T ss_dssp EEEEEECCCSTTCCCSCHHH--HHHHHHHH--HCCCSC--BBCCCB--SSSTTBCHHHHHHHHHSCCGGG--CCSCCSTT
T ss_pred EEEEEEcCccCCCCCCCHHH--HHHHHHHh--cCCCeE--EEeecc--cCcccccHHHHHHHhhcCCcCC--Cccccccc
Confidence 9999998731 01111 23321011 122210 010000 00010 0011 1224432 44
Q ss_pred EEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 228 YIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 228 YVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
.+||||++|+|++...|..++++++ +.++.||++
T Consensus 153 ~~~lid~~G~i~~~~~g~~~~~~l~---~~i~~ll~~ 186 (190)
T 2vup_A 153 TSFLIDRDGVPVERFSPGASVKDIE---KKLIPLLES 186 (190)
T ss_dssp CEEEECTTSCEEEEECTTCCHHHHH---HHHHHHHHC
T ss_pred eEEEECCCCcEEEEECCCCCHHHHH---HHHHHHHhh
Confidence 8999999999999999998887654 444455543
No 75
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=98.58 E-value=3.1e-07 Score=77.24 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=77.8
Q ss_pred cccCCCceeeCC--CCC---eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610 95 AVKFPDLDVSYS--DRT---TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS 159 (265)
Q Consensus 95 AlyFPnl~~~~l--~G~---tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~ 159 (265)
+..+|+|.+.++ +|+ ++++.+ .++||++||.++. ++||.+|.. .+.
T Consensus 4 G~~~P~f~l~~~~~~G~~~~~v~l~~-----------~~~gk~vvl~F~~--------a~~C~~C~~~~~~l~~l~~~~~ 64 (198)
T 1zof_A 4 TKLAPDFKAPAVLGNNEVDEHFELSK-----------NLGKNGVILFFWP--------KDFTFVCPTEIIAFDKRVKDFH 64 (198)
T ss_dssp TSBCCCCEEEEECTTSCEEEEEETTT-----------SCCSSEEEEEECS--------CTTCSSCCTHHHHHHHTHHHHH
T ss_pred CCcCCceEeecccCCCcccceEEHHH-----------HhCCCcEEEEEEC--------CCCCCchHHHHHHHHHHHHHHH
Confidence 456899999998 898 887542 1268988875541 689998752 232
Q ss_pred cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---cccEEEEEeCCC
Q 024610 160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---LTGYIFLLDKFG 236 (265)
Q Consensus 160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---~vGYVyLVD~~g 236 (265)
+ .++++|.|++++.-. ++.+ ...+++...... ....+ ..+....+.+.+|+... .++.+||||++|
T Consensus 65 ~-~~v~vv~Is~d~~~~-----~~~~-~~~~~~~~~~~~---~~~~~-~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G 133 (198)
T 1zof_A 65 E-KGFNVIGVSIDSEQV-----HFAW-KNTPVEKGGIGQ---VSFPM-VADITKSISRDYDVLFEEAIALRGAFLIDKNM 133 (198)
T ss_dssp H-TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCC---CSSCE-EECTTSHHHHHTTCEETTTEECEEEEEEETTT
T ss_pred H-cCCEEEEEECCCHHH-----HHHH-HHhhhhcccccC---ceeEE-EECCchHHHHHhCCcccCCcccceEEEECCCC
Confidence 2 379999999876211 2222 111221111000 11222 23556778899998721 489999999999
Q ss_pred cEEEcccCCC
Q 024610 237 RIRWQGFGMA 246 (265)
Q Consensus 237 rIRWagsG~a 246 (265)
+|++...|..
T Consensus 134 ~i~~~~~g~~ 143 (198)
T 1zof_A 134 KVRHAVINDL 143 (198)
T ss_dssp EEEEEEEESS
T ss_pred EEEEEEecCC
Confidence 9999998864
No 76
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=98.57 E-value=3e-07 Score=76.89 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=84.6
Q ss_pred cccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610 95 AVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD 160 (265)
Q Consensus 95 AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~ 160 (265)
...+|+|.+.+. +| +++++.+. ++||+.||.++ . .+||.+|.. .+.+
T Consensus 3 G~~aP~f~l~~~~~~G~~~~~~l~~~-----------~~gk~vvl~F~--~------a~~C~~C~~~~~~l~~~~~~~~~ 63 (192)
T 2h01_A 3 QGQAPSFKAEAVFGDNTFGEVSLSDF-----------IGKKYVLLYFY--P------LDFTFVCPSEIIALDKALDSFKE 63 (192)
T ss_dssp SSBCCCCEEEEECTTSCEEEEEGGGG-----------TTTCEEEEEEC--S------CSSCSSCCHHHHHHHHTHHHHHH
T ss_pred CCcCCCcEeEeeecCCceeEEeHHHH-----------cCCCeEEEEEE--C------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 346899999998 99 88876421 26898777443 1 689888752 2222
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCCCc
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKFGR 237 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~gr 237 (265)
.++++|-|++++.-. ++.+ ....++..+... ....+ ..+....+-+.+|+.. ..++.+||||++|+
T Consensus 64 -~~v~vv~Is~d~~~~-----~~~~-~~~~~~~~~~~~---~~~~~-l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~ 132 (192)
T 2h01_A 64 -RNVELLGCSVDSKFT-----HLAW-KKTPLSQGGIGN---IKHTL-ISDISKSIARSYDVLFNESVALRAFVLIDKQGV 132 (192)
T ss_dssp -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTEECCEEEEECTTSB
T ss_pred -CCCEEEEEEeCCHHH-----HHHH-HHhHHhhCCccC---CCcCe-EECCcHHHHHHhCCcCcCCceeeEEEEEcCCCE
Confidence 579999999975221 2222 111111111100 11222 2455677889999872 24789999999999
Q ss_pred EEEcccCCC-CHHHHHHHHHHHHhhh
Q 024610 238 IRWQGFGMA-TPEELSSLLSCTSLLL 262 (265)
Q Consensus 238 IRWagsG~a-t~~E~e~L~k~~~~Ll 262 (265)
|++...|.. .+...+.+.+.++.|.
T Consensus 133 i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 133 VQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp EEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 999998853 2334445555555554
No 77
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.55 E-value=1.2e-07 Score=74.63 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=75.6
Q ss_pred ccccCCCc-eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 94 AAVKFPDL-DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 94 ~AlyFPnl-~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
.+..+|++ .+.+++| ++++.+ ++||+.||.++ ++||.+|.. .+.+..
T Consensus 4 ~g~~~p~~~~l~~~~g-~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~~~l~~l~~~~~~~~ 61 (144)
T 1o73_A 4 LAKYLPGATNLLSKSG-EVSLGS------------LVGKTVFLYFS---------ASWCPPCRGFTPVLAEFYEKHHVAK 61 (144)
T ss_dssp GGGTSCTTCCBBCTTS-CBCSGG------------GTTCEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhCccceEeecCCC-cCcHHH------------hCCCEEEEEEE---------CcCCHHHHHHHHHHHHHHHHhccCC
Confidence 45678997 9999999 887542 35898888665 789999862 233235
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEe-CCCcEEEc
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD-KFGRIRWQ 241 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWa 241 (265)
+++++.|+++++.- . ++.+ +. ..++. ...+...+....+.+.+++.. ++.+||+| ++|+|++.
T Consensus 62 ~~~vv~i~~d~~~~--~--~~~~----~~-~~~~~-----~~~~~~~~~~~~~~~~~~v~~--~Pt~~lid~~~G~i~~~ 125 (144)
T 1o73_A 62 NFEVVLISWDENES--D--FHDY----YG-KMPWL-----ALPFDQRSTVSELGKTFGVES--IPTLITINADTGAIIGT 125 (144)
T ss_dssp TEEEEEEECCSSHH--H--HHHH----HT-TCSSE-----ECCTTCHHHHHHHHHHHTCCS--SSEEEEEETTTCCEEES
T ss_pred CEEEEEEeCCCCHH--H--HHHH----HH-hCCce-----EeeccchhHHHHHHHHcCCCC--CCEEEEEECCCCeEEec
Confidence 89999999986421 1 2222 22 22220 000000122467889999975 99999999 99999998
Q ss_pred ccCC
Q 024610 242 GFGM 245 (265)
Q Consensus 242 gsG~ 245 (265)
..+.
T Consensus 126 ~~~~ 129 (144)
T 1o73_A 126 QART 129 (144)
T ss_dssp CHHH
T ss_pred chhh
Confidence 7553
No 78
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=98.54 E-value=3.7e-07 Score=80.36 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=82.6
Q ss_pred ccccCCCceeeCC-C--CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610 94 AAVKFPDLDVSYS-D--RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD 160 (265)
Q Consensus 94 ~AlyFPnl~~~~l-~--G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~ 160 (265)
....+|+|.+.++ + |+++++.+ ++||+.||.+| + .+||.+|.. .|.+
T Consensus 50 vG~~aPdF~l~~~~d~~G~~vsLsd------------~~Gk~vvL~F~--~------~~~cp~C~~el~~l~~l~~~~~~ 109 (240)
T 3qpm_A 50 ISKPAPQWEGTAVINGEFKELKLSD------------YRGKYLVFFFY--P------LDFTFVCPTEIIAFSDRVHEFRA 109 (240)
T ss_dssp TTSBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC--S------CTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEeeeeeCCCCcEEEHHH------------hCCCEEEEEEE--C------CCCCCchHHHHHHHHHHHHHHHH
Confidence 4557899997754 4 56887643 36898887554 1 499998862 2332
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG 236 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g 236 (265)
.++++|.||+++..- ...+ ....++...... ....+ ..+....+-+++|+... .++.+||||++|
T Consensus 110 -~gv~vv~Is~D~~~~-----~~~~-~~~~~~~~~~~~---~~fp~-l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G 178 (240)
T 3qpm_A 110 -INTEVVACSVDSQFT-----HLAW-IITPRKQGGLGP---MKIPL-LSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKG 178 (240)
T ss_dssp -TTEEEEEEESSCHHH-----HHHH-HHSCGGGTCCCS---CSSCE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred -CCCEEEEEECCCHHH-----HHHH-HHHHHhhcCCCC---CceeE-EeCchHHHHHHhCCccccCCCccceEEEEcCCC
Confidence 479999999876321 2222 222222111000 11222 24666789999999743 368899999999
Q ss_pred cEEEcccCCCCH-HHHHHHHHHHHhh
Q 024610 237 RIRWQGFGMATP-EELSSLLSCTSLL 261 (265)
Q Consensus 237 rIRWagsG~at~-~E~e~L~k~~~~L 261 (265)
+||+...|..+. ..++.+.+.++.|
T Consensus 179 ~I~~~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 179 VLRQITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999998775332 2234444444433
No 79
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=98.53 E-value=4.3e-07 Score=78.46 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=83.4
Q ss_pred ccccCCCceeeC---CCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhcc
Q 024610 94 AAVKFPDLDVSY---SDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSD 160 (265)
Q Consensus 94 ~AlyFPnl~~~~---l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~ 160 (265)
....+|+|.+.+ .+|+++++.+ ++||+.||.++ . .+||.+|.. .|.+
T Consensus 29 ~G~~aP~f~l~~~~~~~g~~v~l~d------------~~Gk~vll~F~--p------a~~Cp~C~~~~~~l~~l~~~~~~ 88 (220)
T 1zye_A 29 VTQHAPYFKGTAVVSGEFKEISLDD------------FKGKYLVLFFY--P------LDFTFVCPTEIIAFSDKASEFHD 88 (220)
T ss_dssp TTSBCCCCEEEEECSSSEEEEEGGG------------GTTSEEEEEEC--S------CTTCSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcEEEeeeCCCCcEEEHHH------------hCCCeEEEEEE--C------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 345689999875 4578877542 36898887444 2 789998762 2222
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG 236 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g 236 (265)
.++++|.|++++..- ++.+ +...++..+... ....+ ..+....+.+.+|+... .++.+||||++|
T Consensus 89 -~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G 157 (220)
T 1zye_A 89 -VNCEVVAVSVDSHFS-----HLAW-INTPRKNGGLGH---MNIAL-LSDLTKQISRDYGVLLEGPGLALRGLFIIDPNG 157 (220)
T ss_dssp -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTTEECEEEEEECTTS
T ss_pred -CCCEEEEEECCCHHH-----HHHH-HHHHHHhCCCcC---CceEE-EECCcHHHHHHhCCeecCCCcccceEEEECCCC
Confidence 579999999986321 2222 111122111100 11222 24666789999999732 588999999999
Q ss_pred cEEEcccCCCCH-HHHHHHHHHHHhhh
Q 024610 237 RIRWQGFGMATP-EELSSLLSCTSLLL 262 (265)
Q Consensus 237 rIRWagsG~at~-~E~e~L~k~~~~Ll 262 (265)
+|||...|..+. ...+.+.+.++.|+
T Consensus 158 ~I~~~~~g~~~~~~~~~ell~~l~~l~ 184 (220)
T 1zye_A 158 VIKHLSVNDLPVGRSVEETLRLVKAFQ 184 (220)
T ss_dssp BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 999998886432 23333444444443
No 80
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.53 E-value=3.2e-07 Score=72.82 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=75.4
Q ss_pred cccCCC-ceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 95 AVKFPD-LDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 95 AlyFPn-l~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
...+|+ +.+.+++| ++++.+ ++||+.||-++ ++||.+|.. .+.+..+
T Consensus 5 ~~~~P~~f~l~~~~g-~~~l~~------------~~gk~vll~F~---------a~wC~~C~~~~p~l~~l~~~~~~~~~ 62 (146)
T 1o8x_A 5 DKYLPGIEKLRRGDG-EVEVKS------------LAGKLVFFYFS---------ASWCPPARGFTPQLIEFYDKFHESKN 62 (146)
T ss_dssp GGTSTTCCEEEETTE-EEEGGG------------GTTCEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HhhCCCceEEEcCCC-CCcHHH------------hCCCEEEEEEE---------ccCCHHHHHHHHHHHHHHHHhhhcCC
Confidence 456899 89999999 987653 35898888665 899999862 2333358
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEe-CCCcEEEcc
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLD-KFGRIRWQG 242 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD-~~grIRWag 242 (265)
++++.|+++++.- . ++.+ + +..++. ...+...+....+.+.+++.. ++.+||+| ++|+|++..
T Consensus 63 ~~vv~v~~d~~~~--~--~~~~----~-~~~~~~-----~~~~~~~d~~~~~~~~~~v~~--~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 63 FEVVFCTWDEEED--G--FAGY----F-AKMPWL-----AVPFAQSEAVQKLSKHFNVES--IPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp EEEEEEECCCSHH--H--HHHH----H-TTCSSE-----ECCGGGHHHHHHHHHHTTCCS--SSEEEEEETTTCCEEESC
T ss_pred eEEEEEeCCCCHH--H--HHHH----H-HHCCce-----eeccchhhHHHHHHHHhCCCC--CCEEEEEECCCCeEEEec
Confidence 9999999986421 1 2222 2 222321 111110123467889999975 99999999 999999987
Q ss_pred cC
Q 024610 243 FG 244 (265)
Q Consensus 243 sG 244 (265)
.+
T Consensus 127 ~~ 128 (146)
T 1o8x_A 127 AR 128 (146)
T ss_dssp HH
T ss_pred ch
Confidence 54
No 81
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=98.53 E-value=7.6e-07 Score=76.62 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=78.6
Q ss_pred cccccCCCceeeCC--CC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh
Q 024610 93 LAAVKFPDLDVSYS--DR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF 158 (265)
Q Consensus 93 ~~AlyFPnl~~~~l--~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~ 158 (265)
......|+|.+.+. +| +++++.+. ++||+.||.++ . .+||.+|.. .|
T Consensus 22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~-----------~~gk~vvl~F~--p------a~~C~~C~~~~~~l~~l~~~~ 82 (213)
T 2i81_A 22 YVGKEAPFFKAEAVFGDNSFGEVNLTQF-----------IGKKYVLLYFY--P------LDFTFVCPSEIIALDKALDAF 82 (213)
T ss_dssp CBTSBCCCCEEEEECTTSCEEEEEGGGG-----------TTTCEEEEEEC--S------CTTSSHHHHHHHHHHHTHHHH
T ss_pred cCCCcCCCeEeeccccCCceeEEeHHHH-----------cCCCeEEEEEE--c------CCCCCCCHHHHHHHHHHHHHH
Confidence 34556899999998 89 88875421 26898777443 2 789998862 22
Q ss_pred ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccC---CcccEEEEEeCC
Q 024610 159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILN---LLTGYIFLLDKF 235 (265)
Q Consensus 159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N---~~vGYVyLVD~~ 235 (265)
.+ .++++|.|++++... ++.+ ....++.-.-+. ....+ ..+....+-+++|+.. ..++.+||||++
T Consensus 83 ~~-~~v~vv~Is~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~ 151 (213)
T 2i81_A 83 HE-RNVELLGCSVDSKYT-----HLAW-KKTPLAKGGIGN---IKHTL-LSDITKSISKDYNVLFDDSVSLRAFVLIDMN 151 (213)
T ss_dssp HH-TTEEEEEEESSCHHH-----HHHH-HSSCGGGTCCCS---CSSEE-EECTTSHHHHHTTCEETTTEECEEEEEECTT
T ss_pred HH-CCCEEEEEeCCCHHH-----HHHH-HHHHHhhCCccC---CCceE-EECCchHHHHHhCCccccCCcccEEEEECCC
Confidence 22 579999999975321 2222 111111101000 11222 2455678999999872 147889999999
Q ss_pred CcEEEcccCCCC
Q 024610 236 GRIRWQGFGMAT 247 (265)
Q Consensus 236 grIRWagsG~at 247 (265)
|+|||...|..+
T Consensus 152 G~i~~~~~~~~~ 163 (213)
T 2i81_A 152 GIVQHLLVNNLA 163 (213)
T ss_dssp SBEEEEEEECTT
T ss_pred CEEEEEEecCCC
Confidence 999999887643
No 82
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=98.52 E-value=4e-07 Score=75.46 Aligned_cols=125 Identities=15% Similarity=0.031 Sum_probs=75.4
Q ss_pred ccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 94 AAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
.+..+|+|.+++++|+++++.+ ++||+.||.++ .+||.+|.. .+.+ .+
T Consensus 23 ~g~~~p~f~l~~~~G~~~~l~~------------~~gk~vll~F~---------atwC~~C~~~~~~l~~l~~~~~~-~~ 80 (183)
T 2obi_A 23 CARSMHEFSAKDIDGHMVNLDK------------YRGFVCIVTNV---------ASQCGKTEVNYTQLVDLHARYAE-CG 80 (183)
T ss_dssp GCCSGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GT
T ss_pred ccCcccceEEEcCCCCEeeHHH------------cCCCEEEEEEe---------CCCCCCcHHHHHHHHHHHHHHhc-CC
Confidence 4456899999999999998653 36899888665 899999862 2222 36
Q ss_pred eeEEEEeccc-----chhhccccchHHHHHHHHhcCCCCCccccceeEEE-cCCh----HHHHHHh-------ccc---C
Q 024610 164 VHLYEVSFID-----SWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYS-FGDH----YYFRKEL-------KIL---N 223 (265)
Q Consensus 164 vqiv~In~~e-----~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~-~g~~----~~iRe~L-------gi~---N 223 (265)
+++|.|++++ ...... ++.+ +.+ .+.. ..++. .+.. ..+-+.+ |+. -
T Consensus 81 v~vv~vs~d~~~~~e~~~~~~--~~~~----~~~-~~~~------~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i 147 (183)
T 2obi_A 81 LRILAFPCNQFGKQEPGSNEE--IKEF----AAG-YNVK------FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAI 147 (183)
T ss_dssp EEEEEEECCCSTTCCCSCHHH--HHHH----HHT-TTCC------SEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSC
T ss_pred eEEEEEECCCCCCCCCCCHHH--HHHH----HHH-cCCC------ceEEeeeccCCcchhHHHHHhhccCCCCCcccccc
Confidence 9999999863 101011 2232 222 1111 11111 0111 1122222 322 1
Q ss_pred CcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 224 LLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
..++.+||||++|+|++...|..++++++.
T Consensus 148 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 177 (183)
T 2obi_A 148 KWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 177 (183)
T ss_dssp CSTTCEEEECTTSCEEEEECTTSCTHHHHT
T ss_pred cccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence 235789999999999999999888877543
No 83
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.51 E-value=4.6e-07 Score=84.57 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=84.2
Q ss_pred ccccCCCce-----eeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hh
Q 024610 94 AAVKFPDLD-----VSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AF 158 (265)
Q Consensus 94 ~AlyFPnl~-----~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~ 158 (265)
.....|+|. +.+++|+++++.+ ++||+.||-+| ++||.+|.. .+
T Consensus 53 vG~~aPdF~~~~~wL~d~dG~~vsLsd------------l~GK~vLl~F~---------atwC~~C~~~~p~L~~l~~~~ 111 (352)
T 2hyx_A 53 SCGTAPDLKGITGWLNTPGNKPIDLKS------------LRGKVVLIDFW---------AYSCINCQRAIPHVVGWYQAY 111 (352)
T ss_dssp CCCBCCCCCSCCEEESSGGGCCCCGGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCccccccccCCCCCCEEcHHH------------hCCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHh
Confidence 445679998 7889999987542 36899888665 899999873 22
Q ss_pred ccCCCeeEEEEecccchh---hccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeC
Q 024610 159 SDSKNVHLYEVSFIDSWL---LCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDK 234 (265)
Q Consensus 159 ~~~~~vqiv~In~~e~~l---k~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~ 234 (265)
.+ .++++|.|++++.-. ... ++.+ +++ +++. .+ ..+....+.+.+++.- ++.+||||+
T Consensus 112 ~~-~~v~vi~Vs~d~~~~~d~~~~--~~~~----~~~~~l~f--------pv-~~D~~~~l~~~ygV~~--~Pt~~lID~ 173 (352)
T 2hyx_A 112 KD-SGLAVIGVHTPEYAFEKVPGN--VAKG----AANLGISY--------PI-ALDNNYATWTNYRNRY--WPAEYLIDA 173 (352)
T ss_dssp GG-GTEEEEEEECCSSGGGGCHHH--HHHH----HHHHTCCS--------CE-EECTTSHHHHHTTCCE--ESEEEEECT
T ss_pred hc-CCeEEEEEECCcccccCCHHH--HHHH----HHHcCCCc--------cE-EeCCcHHHHHHcCCCc--cCEEEEEeC
Confidence 22 369999999853110 011 2332 222 2221 12 2466677889999874 899999999
Q ss_pred CCcEEEcccCCCCHHHHHHHH
Q 024610 235 FGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 235 ~grIRWagsG~at~~E~e~L~ 255 (265)
+|+|++...|..+.++++...
T Consensus 174 ~G~Iv~~~~G~~~~~~l~~~I 194 (352)
T 2hyx_A 174 TGTVRHIKFGEGDYNVTETLV 194 (352)
T ss_dssp TSBEEEEEESBCCHHHHHHHH
T ss_pred CCeEEEEEcCCCCHHHHHHHH
Confidence 999999999998887765443
No 84
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=98.50 E-value=3.9e-07 Score=76.53 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=79.0
Q ss_pred cccccCCCceee-CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-Hh---hcc------C
Q 024610 93 LAAVKFPDLDVS-YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-EA---FSD------S 161 (265)
Q Consensus 93 ~~AlyFPnl~~~-~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-e~---~~~------~ 161 (265)
......|+|.+. +.+|+++++.+ .++||..|| +|++ ++||.+|. +. +.+ .
T Consensus 16 ~vG~~aPdf~l~~~~~g~~v~L~d-----------~~~gk~vvL-~f~p-------a~wcp~C~~~e~p~l~~~~~~~~~ 76 (173)
T 3mng_A 16 KVGDAIPAVEVFEGEPGNKVNLAE-----------LFKGKKGVL-FGVP-------GAFTPGCSKTHLPGFVEQAEALKA 76 (173)
T ss_dssp CTTCBCCCCEEECSSTTCEEEHHH-----------HTTTSEEEE-EECS-------CTTCHHHHHTHHHHHHHTHHHHHT
T ss_pred CCCCCCCCeEeeeCCCCCEEEhHH-----------HhCCCcEEE-EEEe-------CCCCCCCCHHHHHHHHHHHHHHHh
Confidence 345678999999 99999998653 236886444 4555 89999998 22 211 2
Q ss_pred CCeeEEE-EecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----------cccEE
Q 024610 162 KNVHLYE-VSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----------LTGYI 229 (265)
Q Consensus 162 ~~vqiv~-In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----------~vGYV 229 (265)
.++++|. |+.++-.. .+.+ .. +.+++. + ..+ ..|....+-+++|+... ...++
T Consensus 77 ~gv~vv~~iS~D~~~~-----~~~f-~~--~~~~~~-~-----fp~-l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~t 141 (173)
T 3mng_A 77 KGVQVVACLSVNDAFV-----TGEW-GR--AHKAEG-K-----VRL-LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFS 141 (173)
T ss_dssp TTCCEEEEEESSCHHH-----HHHH-HH--HTTCTT-T-----CEE-EECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEE
T ss_pred CCCEEEEEEcCCCHHH-----HHHH-HH--HhCCCC-c-----eEE-EECCChHHHHHhCCCcccccccccCCcceEEEE
Confidence 4799997 99876321 2222 11 112221 1 222 34667789999999754 35899
Q ss_pred EEEeCCCcEEEcccCCC
Q 024610 230 FLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 230 yLVD~~grIRWagsG~a 246 (265)
|||| +|+|||..-|..
T Consensus 142 fvID-dG~I~~~~v~~~ 157 (173)
T 3mng_A 142 MVVQ-DGIVKALNVEPD 157 (173)
T ss_dssp EEEE-TTEEEEEEECTT
T ss_pred EEEE-CCEEEEEEEeCC
Confidence 9999 999999998864
No 85
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=98.49 E-value=5.2e-07 Score=78.62 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=83.0
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
...+|+|.+.+.+| ++++.+ ++||--+|.++|+ ++||.+|.. .|.+ .++
T Consensus 8 G~~aP~F~l~~~~G-~v~l~d------------~~Gk~~vvL~~~~-------a~~cp~C~~el~~l~~l~~~f~~-~~v 66 (224)
T 1prx_A 8 GDVAPNFEANTTVG-RIRFHD------------FLGDSWGILFSHP-------RDFTPVCTTELGRAAKLAPEFAK-RNV 66 (224)
T ss_dssp TCBCCCCEEEETTE-EEEHHH------------HHTTSEEEEEEES-------CSSCHHHHHHHHHHHHHHHHHHT-TTE
T ss_pred cCCCCCcEEecCCC-CEEHHH------------HcCCCeEEEEEEC-------CCCCCCcHHHHHHHHHHHHHHHH-CCC
Confidence 45689999999999 887643 2466223334555 889998862 2332 479
Q ss_pred eEEEEecccchhhccccchHHHHHHHHhcCC----CCCccccceeEEEcCChHHHHHHhcccCC----------cccEEE
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKD----AGENVLQRQIVYSFGDHYYFRKELKILNL----------LTGYIF 230 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p----~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----------~vGYVy 230 (265)
++|.||+++... .+.+ ...++.... .+ ....+ ..+....+-+++||... .++.+|
T Consensus 67 ~vi~IS~D~~~~-----~~~~-~~~i~~~~~~~~~~~----~~fpi-l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~f 135 (224)
T 1prx_A 67 KLIALSIDSVED-----HLAW-SKDINAYNSEEPTEK----LPFPI-IDDRNRELAILLGMLDPAEKDEKGMPVTARVVF 135 (224)
T ss_dssp EEEEEESSCHHH-----HHHH-HHHHHHHTTSCCCSC----CSSCE-EECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEE
T ss_pred EEEEEcCCCHHH-----HHHH-HHHHHHhhCcccccC----cCcce-eecCchHHHHHhCCCCcccccCCCccccceEEE
Confidence 999999976321 2222 233333211 11 11222 23556778899999632 468999
Q ss_pred EEeCCCcEEEcccCCCC-HHHHHHHHHHHHhh
Q 024610 231 LLDKFGRIRWQGFGMAT-PEELSSLLSCTSLL 261 (265)
Q Consensus 231 LVD~~grIRWagsG~at-~~E~e~L~k~~~~L 261 (265)
|||++|+||+...|..+ +...+.+.+.++.|
T Consensus 136 iID~~G~I~~~~~~~~~~gr~~~eil~~i~~l 167 (224)
T 1prx_A 136 VFGPDKKLKLSILYPATTGRNFDEILRVVISL 167 (224)
T ss_dssp EECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred EECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999999999987643 22233344444444
No 86
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=98.47 E-value=1.2e-06 Score=72.92 Aligned_cols=123 Identities=17% Similarity=0.071 Sum_probs=75.2
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCe
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNV 164 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~v 164 (265)
+..+|++.+.+++|+++++.+ ++||+.||.++ ++||.+|.. .+.+ .++
T Consensus 26 g~~~p~f~l~~~~G~~v~l~~------------~~Gk~vlv~F~---------atwC~~C~~~~~~l~~l~~~~~~-~~v 83 (185)
T 2gs3_A 26 ARSMHEFSAKDIDGHMVNLDK------------YRGFVCIVTNV---------ASQGGKTEVNYTQLVDLHARYAE-CGL 83 (185)
T ss_dssp CCCGGGCEEEBTTSCEEEGGG------------GTTSEEEEEEE---------CSSSTTHHHHHHHHHHHHHHHGG-GTE
T ss_pred CCCcCCceeEcCCCCEeeHHH------------cCCCEEEEEEe---------cCCCCchHHHHHHHHHHHHHhhc-CCe
Confidence 557999999999999998653 36899888555 899999862 2222 369
Q ss_pred eEEEEeccc-----chhhccccchHHHHHHHHh-cCCCCCccccceeEEE-c---CC-hHHHHHHh-------ccc---C
Q 024610 165 HLYEVSFID-----SWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYS-F---GD-HYYFRKEL-------KIL---N 223 (265)
Q Consensus 165 qiv~In~~e-----~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~-~---g~-~~~iRe~L-------gi~---N 223 (265)
++|.|++++ ...... ++.+ +++ +++ ..++. . +. ...+-+.+ |+. -
T Consensus 84 ~vv~is~d~~~~~~~~~~~~--~~~~----~~~~~~~--------~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i 149 (185)
T 2gs3_A 84 RILAFPCNQFGKQEPGSNEE--IKEF----AAGYNVK--------FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAI 149 (185)
T ss_dssp EEEEEECCTTTTCCCSCHHH--HHHH----HHHTTCC--------SEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSC
T ss_pred EEEEEECcccCCCCCCCHHH--HHHH----HHHcCCC--------CeeeeeeccCChhhhHHHHHHHhhcccccccCCcc
Confidence 999999863 111111 2332 111 222 11110 0 11 01122222 332 1
Q ss_pred CcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 224 LLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 224 ~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
..++.+||||++|+|++...|..++++++.
T Consensus 150 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~ 179 (185)
T 2gs3_A 150 KWNFTKFLIDKNGCVVKRYGPMEEPLVIEK 179 (185)
T ss_dssp CSSCCEEEECTTSCEEEEECTTSCGGGGGG
T ss_pred cccceEEEECCCCCEEEeeCCCCCHHHHHH
Confidence 225699999999999999999888877554
No 87
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=98.46 E-value=2.4e-06 Score=74.20 Aligned_cols=59 Identities=5% Similarity=-0.045 Sum_probs=45.0
Q ss_pred ccccccCCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccC
Q 024610 92 ALAAVKFPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDS 161 (265)
Q Consensus 92 a~~AlyFPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~ 161 (265)
+..+..+|+|.+.+++ |+++++.+ ++||+.||.++ +|||.||.+ .+.+
T Consensus 29 ~~~~~~~pdF~l~d~~~G~~v~Lsd------------~~GKvvll~Fw---------At~C~~c~e~p~L~~l~~~~~~- 86 (215)
T 2i3y_A 29 KDEKGTIYDYEAIALNKNEYVSFKQ------------YVGKHILFVNV---------ATYCGLTAQYPELNALQEELKP- 86 (215)
T ss_dssp CCCCCCGGGCEEEBSSSSCEEEGGG------------GTTSEEEEEEE---------CSSSGGGGGHHHHHHHHHHHGG-
T ss_pred ccccCCcCCcEeeeCCCCCEEcHHH------------hCCCEEEEEEe---------CCCCCChHhHHHHHHHHHHhcc-
Confidence 4556679999999999 99998653 47998777554 999999852 2332
Q ss_pred CCeeEEEEecc
Q 024610 162 KNVHLYEVSFI 172 (265)
Q Consensus 162 ~~vqiv~In~~ 172 (265)
.++++|.|+..
T Consensus 87 ~g~~Vlgvs~d 97 (215)
T 2i3y_A 87 YGLVVLGFPCN 97 (215)
T ss_dssp GTEEEEEEECC
T ss_pred CCeEEEEEEcc
Confidence 36999999975
No 88
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.42 E-value=1.5e-07 Score=77.29 Aligned_cols=115 Identities=13% Similarity=0.028 Sum_probs=76.4
Q ss_pred ccccCCCc-eeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 94 AAVKFPDL-DVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 94 ~AlyFPnl-~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
.+..+|++ .+.+++| ++++.+ ++||+.||-++ ++||.+|.+ .+.+..
T Consensus 24 vG~~~P~f~~l~~~~g-~v~l~~------------~~gk~vll~F~---------a~wC~~C~~~~p~l~~l~~~~~~~~ 81 (165)
T 3s9f_A 24 VAKHLGEALKLRKQAD-TADMDS------------LSGKTVFFYFS---------ASWCPPCRGFTPQLVEFYEKHHDSK 81 (165)
T ss_dssp HHHHHHHTSCEEETTE-EECSGG------------GTTSEEEEEEE---------CTTCHHHHHHHHHHHHHHHHHTTTT
T ss_pred hcccCCcceeeecCCC-cccHHH------------cCCCEEEEEEE---------CCcChhHHHHHHHHHHHHHHhccCC
Confidence 34457888 7899999 887542 36899888665 899999872 234445
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCC-CcEEEc
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKF-GRIRWQ 241 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~-grIRWa 241 (265)
++++|.|++++..- . ++.+ + +..++. ...++..+....+.+.+++.- ++.+||+|++ |+|++.
T Consensus 82 ~v~vv~v~~d~~~~--~--~~~~----~-~~~~~~-----~~~~~~~~~~~~l~~~~~v~~--~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 82 NFEIILASWDEEED--D--FNAY----Y-AKMPWL-----SIPFANRNIVEALTKKYSVES--IPTLIGLNADTGDTVTT 145 (165)
T ss_dssp TEEEEEEECCCSHH--H--HHHH----H-TTCSSE-----ECCTTCHHHHHHHHHHTTCCS--SSEEEEEETTTCCEEES
T ss_pred CeEEEEEecCCCHH--H--HHHH----H-HhCCCc-----ccccCchhHHHHHHHHcCCCC--CCEEEEEeCCCCEEEec
Confidence 89999999987531 1 2222 2 222321 011101112267899999975 9999999998 999998
Q ss_pred ccCCC
Q 024610 242 GFGMA 246 (265)
Q Consensus 242 gsG~a 246 (265)
..+..
T Consensus 146 ~~~~~ 150 (165)
T 3s9f_A 146 RARHA 150 (165)
T ss_dssp CHHHH
T ss_pred ccHHH
Confidence 76543
No 89
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=98.39 E-value=1.4e-06 Score=75.70 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=76.6
Q ss_pred cccCCCceeeCC--CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhccCC
Q 024610 95 AVKFPDLDVSYS--DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSK 162 (265)
Q Consensus 95 AlyFPnl~~~~l--~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~ 162 (265)
...+|+|.+.+. +| ++++.+ ++||--+|.++++ ++||-+|.. .|.+ .
T Consensus 6 G~~aP~F~l~~~~~~G-~v~l~d------------~~Gk~~vvL~f~~-------a~~cp~C~~el~~l~~l~~~f~~-~ 64 (220)
T 1xcc_A 6 GATFPNFTAKASGIDG-DFELYK------------YIENSWAILFSHP-------NDFTPVCTTELAELGKMHEDFLK-L 64 (220)
T ss_dssp TCBCCCCEECBTTCSS-CEEHHH------------HTTTSEEEEECCS-------CTTCHHHHHHHHHHHHTHHHHHT-T
T ss_pred CCCCCCcEeecccCCC-cEeHHH------------HcCCCeEEEEEEC-------CCCCCCCHHHHHHHHHHHHHHHH-c
Confidence 456899999999 99 887542 3577223334556 899998862 2332 4
Q ss_pred CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----------cccEEEEE
Q 024610 163 NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----------LTGYIFLL 232 (265)
Q Consensus 163 ~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----------~vGYVyLV 232 (265)
++++|.||+++... .+.+ ...++..+.... ....+ ..+....+-+.+||... .++.+|||
T Consensus 65 ~v~vi~vS~D~~~~-----~~~~-~~~i~~~~~~~~---~~fpi-l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flI 134 (220)
T 1xcc_A 65 NCKLIGFSCNSKES-----HDKW-IEDIKYYGKLNK---WEIPI-VCDESRELANKLKIMDEQEKDITGLPLTCRCLFFI 134 (220)
T ss_dssp TEEEEEEESSCHHH-----HHHH-HHHHHHHHTCSC---CCCCE-EECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEE
T ss_pred CCEEEEEeCCCHHH-----HHHH-HHHHHHHhcCCC---Cccee-EECchhHHHHHhCCCCcccccCCCCCcccceEEEE
Confidence 79999999976321 1222 222332101000 11223 23556778899999632 36799999
Q ss_pred eCCCcEEEcccCCC
Q 024610 233 DKFGRIRWQGFGMA 246 (265)
Q Consensus 233 D~~grIRWagsG~a 246 (265)
|++|+||+...|..
T Consensus 135 D~~G~I~~~~~~~~ 148 (220)
T 1xcc_A 135 SPEKKIKATVLYPA 148 (220)
T ss_dssp CTTSBEEEEEEECT
T ss_pred CCCCEEEEEEecCC
Confidence 99999999987654
No 90
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=98.37 E-value=4e-06 Score=72.16 Aligned_cols=58 Identities=7% Similarity=-0.069 Sum_probs=42.1
Q ss_pred cccccCCCceeeCCC-CCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---------hhccCC
Q 024610 93 LAAVKFPDLDVSYSD-RTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---------AFSDSK 162 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~-G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---------~~~~~~ 162 (265)
..+..+|+|.+.+++ |+++++.+ ++||+.||.++ +|||.||.+ .+.+ .
T Consensus 12 ~~~~~~pdF~l~d~~~G~~v~Ls~------------~kGKvvll~F~---------At~C~~c~e~p~L~~l~~~~~~-~ 69 (207)
T 2r37_A 12 GISGTIYEYGALTIDGEEYIPFKQ------------YAGKYVLFVNV---------ASYGGLTGQYIELNALQEELAP-F 69 (207)
T ss_dssp ---CCGGGCEEEBTTSSCEEEGGG------------GTTSEEEEEEE---------CSSSTTTTHHHHHHHHHHHHGG-G
T ss_pred cccCccCCeEeeeCCCCCEEcHHH------------hCCCEEEEEEe---------CCCCCChHHHHHHHHHHHHhcc-C
Confidence 445568999999999 99998653 47998877554 899998832 2332 3
Q ss_pred CeeEEEEecc
Q 024610 163 NVHLYEVSFI 172 (265)
Q Consensus 163 ~vqiv~In~~ 172 (265)
++++|-|+..
T Consensus 70 g~~vlgvs~d 79 (207)
T 2r37_A 70 GLVILGFPCN 79 (207)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEECc
Confidence 6999999965
No 91
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=98.35 E-value=1.1e-06 Score=78.15 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=76.3
Q ss_pred ccccCCCceeeCC---CCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610 94 AAVKFPDLDVSYS---DRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD 160 (265)
Q Consensus 94 ~AlyFPnl~~~~l---~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~ 160 (265)
....+|+|.+.++ +|+++++.+ ++||+.||.+| . .+||.+|. +.|.+
T Consensus 64 vG~~aPdF~l~~l~d~~G~~vsLsd------------~kGK~vvL~F~--~------a~~cp~C~~el~~l~~l~~~~~~ 123 (254)
T 3tjj_A 64 ISKPAPYWEGTAVIDGEFKELKLTD------------YRGKYLVFFFY--P------LDFTFVCPTEIIAFGDRLEEFRS 123 (254)
T ss_dssp TTSBCCCCEEEEEETTEEEEEEGGG------------GTTSEEEEEEC--S------CTTCSSCCHHHHHHHHTHHHHHT
T ss_pred CCCCCCCcEeeeecCCCCcEEeHHH------------HCCCeEEEEEE--C------CCCCCchHHHHHHHHHHHHHHHH
Confidence 4557899997654 677887653 36898776443 2 78988775 23332
Q ss_pred CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC----cccEEEEEeCCC
Q 024610 161 SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL----LTGYIFLLDKFG 236 (265)
Q Consensus 161 ~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~----~vGYVyLVD~~g 236 (265)
.++++|.||+++..- ...+ +...++....+. ....+ ..+....+-+++|+... .++.+||||++|
T Consensus 124 -~gv~vv~IS~D~~~~-----~~~~-~~~~~~~~g~~~---~~fp~-l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G 192 (254)
T 3tjj_A 124 -INTEVVACSVDSQFT-----HLAW-INTPRRQGGLGP---IRIPL-LSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKG 192 (254)
T ss_dssp -TTEEEEEEESSCHHH-----HHHH-HTSCGGGTSCCS---CSSCE-EECTTSHHHHHHTCEETTTTEECEEEEEECTTS
T ss_pred -cCCEEEEEcCCCHHH-----HHHH-HHHHHHhcCCcc---cccce-eeCcHHHHHHHcCCccccCCCccceEEEECCCC
Confidence 479999999876321 1222 111111111000 11222 24666789999999753 367899999999
Q ss_pred cEEEcccCCC
Q 024610 237 RIRWQGFGMA 246 (265)
Q Consensus 237 rIRWagsG~a 246 (265)
+||+...|..
T Consensus 193 ~I~~~~~~~~ 202 (254)
T 3tjj_A 193 ILRQITLNDL 202 (254)
T ss_dssp BEEEEEEECT
T ss_pred eEEEEEecCC
Confidence 9999987743
No 92
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=97.70 E-value=5.3e-08 Score=76.36 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=73.0
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHHh----------hcc-CCCe
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFEA----------FSD-SKNV 164 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~-~~~v 164 (265)
.+|++.+.+++|+++++.+ .++|| +.||-++ ++||.+|... +.+ .+++
T Consensus 3 ~~p~~~l~~~~g~~~~l~~-----------~~~gk~~vll~F~---------a~wC~~C~~~~~~l~~~~~~~~~~~~~~ 62 (143)
T 2lus_A 3 FIQGIKLVKKNRCEVNANE-----------ALKDKDIIGFYFS---------AHWCPPCRGFTPILADMYSELVDDSAPF 62 (143)
Confidence 4799999999999987543 13588 8887555 8999998631 211 2578
Q ss_pred eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 165 HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 165 qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
+++.|+++++.- . ++.+ +.. .+.++ ....+..+....+.+.+|+.. ++.+||+|++|+|++...+
T Consensus 63 ~v~~v~~d~~~~--~--~~~~-~~~--~~~~~------~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 63 EIIFVSSDRSED--D--MFQY-MME--SHGDW------LAIPYRSGPASNVTAKYGITG--IPALVIVKKDGTLISMNGR 127 (143)
Confidence 999999886421 1 2222 111 11221 111111233456778888864 8999999999999998533
No 93
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=98.35 E-value=2.2e-06 Score=69.97 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=76.1
Q ss_pred ccccCCCceee--CCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-Hh----------h
Q 024610 94 AAVKFPDLDVS--YSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-EA----------F 158 (265)
Q Consensus 94 ~AlyFPnl~~~--~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-e~----------~ 158 (265)
.....|+|.+. +.+| +++++.+ .++||+.||.+| . .+||.+|. .. +
T Consensus 6 ~G~~aP~f~l~~~~~~G~~~~~~l~~-----------~~~gk~vvl~f~--~------~~~c~~C~~~e~~~l~~~~~~~ 66 (162)
T 1tp9_A 6 VGDVLPDGKLAYFDEQDQLQEVSVHS-----------LVAGKKVILFGV--P------GAFTPTCSLKHVPGFIEKAGEL 66 (162)
T ss_dssp TTCBCCCCEEEEECTTSCEEEEESHH-----------HHTTSEEEEEEE--S------CTTCHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEeecCCCCceeEeHHH-----------HhCCCcEEEEEe--C------CCCCCCCCHHHHHHHHHHHHHH
Confidence 34568999875 8899 8887542 146898777544 2 68888887 32 2
Q ss_pred ccCCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccE
Q 024610 159 SDSKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGY 228 (265)
Q Consensus 159 ~~~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGY 228 (265)
. ..+++ +|-||+++... ++.+ .+..+.+ ....+ ..+....+-+++|+... ..++
T Consensus 67 ~-~~~v~~vv~Is~d~~~~-----~~~~-----~~~~~~~----~~~~~-l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~ 130 (162)
T 1tp9_A 67 K-SKGVTEILCISVNDPFV-----MKAW-----AKSYPEN----KHVKF-LADGSATYTHALGLELDLQEKGLGTRSRRF 130 (162)
T ss_dssp H-HTTCCCEEEEESSCHHH-----HHHH-----HHTCTTC----SSEEE-EECTTSHHHHHTTCEEEETTTTSEEEECCE
T ss_pred H-HCCCCEEEEEECCCHHH-----HHHH-----HHhcCCC----CCeEE-EECCCchHHHHcCcccccccCCCCccceeE
Confidence 2 24799 99999875321 2332 2222211 01222 24666789999999742 3689
Q ss_pred EEEEeCCCcEEEcccCC
Q 024610 229 IFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 229 VyLVD~~grIRWagsG~ 245 (265)
+|||| +|+||+..-|.
T Consensus 131 ~~vid-~G~i~~~~~~~ 146 (162)
T 1tp9_A 131 ALLVD-DLKVKAANIEG 146 (162)
T ss_dssp EEEEE-TTEEEEEEECS
T ss_pred EEEEE-CCEEEEEEeeC
Confidence 99999 99999999887
No 94
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=98.34 E-value=4.5e-07 Score=76.88 Aligned_cols=121 Identities=10% Similarity=0.056 Sum_probs=80.0
Q ss_pred ccccccCCCceeeCC--CC-CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-h---hc-----
Q 024610 92 ALAAVKFPDLDVSYS--DR-TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-A---FS----- 159 (265)
Q Consensus 92 a~~AlyFPnl~~~~l--~G-~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-~---~~----- 159 (265)
-.....+|+|.+.++ +| +++++.+ .++||..|| +++| .+||.+|.. . +.
T Consensus 26 l~vG~~aPdf~l~~~~~~G~~~v~L~d-----------~~~Gk~vvL-~f~~-------a~wcp~C~~~e~p~l~~~~~~ 86 (184)
T 3uma_A 26 IAVGDKLPNATFKEKTADGPVEVTTEL-----------LFKGKRVVL-FAVP-------GAFTPTCSLNHLPGYLENRDA 86 (184)
T ss_dssp CCTTCBCCCCEEEEEETTEEEEEEHHH-----------HHTTSEEEE-EEES-------CTTCHHHHHTHHHHHHHTHHH
T ss_pred CCCCCCCCCcEeecccCCCceEEeHHH-----------HhCCCCEEE-EEEc-------CCCCCCcCHHHHHHHHHHHHH
Confidence 456678999999998 99 8887653 235885444 3455 889999875 2 21
Q ss_pred -cCCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccE
Q 024610 160 -DSKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGY 228 (265)
Q Consensus 160 -~~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGY 228 (265)
...+++ +|.||.++-.. ++.+ .. +.+++. . ..+ ..|....+-+++|+... ...+
T Consensus 87 ~~~~gv~~vv~Is~d~~~~-----~~~f-~~--~~~~~~-~-----fp~-l~D~~~~va~~yGv~~~~~~~g~g~~~~r~ 151 (184)
T 3uma_A 87 ILARGVDDIAVVAVNDLHV-----MGAW-AT--HSGGMG-K-----IHF-LSDWNAAFTKAIGMEIDLSAGTLGIRSKRY 151 (184)
T ss_dssp HHTTTCCEEEEEESSCHHH-----HHHH-HH--HHTCTT-T-----SEE-EECTTCHHHHHTTCEEEEGGGTCEEEECCE
T ss_pred HHHcCCCEEEEEECCCHHH-----HHHH-HH--HhCCCC-c-----eEE-EEcCchHHHHHcCCceeccccCCcccceeE
Confidence 124788 99999976321 2232 11 113331 1 122 24667789999998753 2478
Q ss_pred EEEEeCCCcEEEcccCCCC
Q 024610 229 IFLLDKFGRIRWQGFGMAT 247 (265)
Q Consensus 229 VyLVD~~grIRWagsG~at 247 (265)
+|||| +|+|||...|..+
T Consensus 152 tfiId-dG~I~~~~~~~~~ 169 (184)
T 3uma_A 152 SMLVE-DGVVKALNIEESP 169 (184)
T ss_dssp EEEEE-TTEEEEEEECSST
T ss_pred EEEEC-CCEEEEEEEeCCC
Confidence 99998 9999999988643
No 95
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=98.34 E-value=1.2e-06 Score=77.15 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=82.0
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccCCCc-eEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPK-VSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gK-vSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
...+|+|.+.+.+| ++++.+ ++|| ..|| +|+. ++||-+|.. .|.+ .+
T Consensus 6 G~~aPdF~l~~~~G-~v~l~d------------~~Gk~~vvL--~f~p------a~~cpvC~~el~~l~~l~~ef~~-~~ 63 (233)
T 2v2g_A 6 GEVFPNFEADSTIG-KLKFHD------------WLGNSWGVL--FSHP------RDFTPVSTTELGRVIQLEGDFKK-RG 63 (233)
T ss_dssp TCBCCCCEEEETTC-CEEHHH------------HHCSSEEEE--EECS------CSSCHHHHHHHHHHHHTHHHHHH-TT
T ss_pred CCCCCCcEEecCCC-CEEHHH------------HCCCCeEEE--EEEC------CCCCCCcHHHHHHHHHHHHHHHH-cC
Confidence 45689999999999 887643 2466 6655 3331 789988762 2332 47
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHh--cCCCCCccccceeEEEcCChHHHHHHhcccC----------CcccEEEE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRK--SKDAGENVLQRQIVYSFGDHYYFRKELKILN----------LLTGYIFL 231 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk--~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N----------~~vGYVyL 231 (265)
+++|.||+++... .+.+ ...++. ..+.+ ....+ ..+....+-+++||.. ..++.+||
T Consensus 64 v~vigIS~D~~~~-----~~~~-~~~i~~~~~~~~~----~~fpi-l~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fi 132 (233)
T 2v2g_A 64 VKLIALSCDNVAD-----HKEW-SEDVKCLSGVKGD----MPYPI-IADETRELAVKLGMVDPDERTSTGMPLTCRAVFI 132 (233)
T ss_dssp EEEEEEESSCHHH-----HHHH-HHHHHHHHTCCSS----CSSCE-EECTTCHHHHHTTCEEEEEECTTCCEEECEEEEE
T ss_pred CEEEEEcCCCHHH-----HHHH-HHHHHHhhCcccC----CceEE-EECChHHHHHHhCCcCcccccCCCcccccceEEE
Confidence 9999999976321 2222 222222 22000 11222 2355677889999963 24789999
Q ss_pred EeCCCcEEEcccCCCC-HHHHHHHHHHHHhh
Q 024610 232 LDKFGRIRWQGFGMAT-PEELSSLLSCTSLL 261 (265)
Q Consensus 232 VD~~grIRWagsG~at-~~E~e~L~k~~~~L 261 (265)
||++|+||+...|..+ +...+.+.+.++.|
T Consensus 133 ID~~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 133 IGPDKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp ECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999999999877543 22333344444444
No 96
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=98.29 E-value=5.1e-06 Score=74.02 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=84.3
Q ss_pred cccCCCceeeCCCCCeeeccCCCCCCccCccccC-CCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCC
Q 024610 95 AVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAA-IPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKN 163 (265)
Q Consensus 95 AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l-~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~ 163 (265)
...+|+|.+.+.+| ++++|. +.+ +||..|| ++|+ ++||-+|.. .|.+ .+
T Consensus 8 G~~aPdF~l~~~~G-~v~l~~----------d~l~~GK~vVL-~~fp-------a~~CpvC~tEl~~l~~l~~ef~~-~g 67 (249)
T 3a2v_A 8 GERFPEMEVTTDHG-VIKLPD----------HYVSQGKWFVL-FSHP-------ADFTPVCTTEFVSFARRYEDFQR-LG 67 (249)
T ss_dssp TSBCCCEEEEETTE-EEEETH----------HHHTTTCEEEE-ECCS-------CTTCHHHHHHHHHHHHTHHHHHH-TT
T ss_pred CCCCCCeEEEcCCC-CEecHH----------HHhhCCCEEEE-EEEc-------CCCCcChHHHHHHHHHHHHHHHh-CC
Confidence 45789999999999 676521 111 5886554 3555 899998862 2332 37
Q ss_pred eeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC-----cccEEEEEeCCCcE
Q 024610 164 VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL-----LTGYIFLLDKFGRI 238 (265)
Q Consensus 164 vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~-----~vGYVyLVD~~grI 238 (265)
+++|.||+++... ... +...++.....+ ....+ ..+....+-+.+||... .++.+||||++|+|
T Consensus 68 v~VI~VS~Ds~~~-----~~~-w~~~~~~~~~~~----i~fPi-l~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I 136 (249)
T 3a2v_A 68 VDLIGLSVDSVFS-----HIK-WKEWIERHIGVR----IPFPI-IADPQGTVARRLGLLHAESATHTVRGVFIVDARGVI 136 (249)
T ss_dssp EEEEEEESSCHHH-----HHH-HHHHHHHHTCCC----CCSCE-EECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBE
T ss_pred cEEEEEECCCHHH-----HHH-HHHHHHHhcCCC----CceeE-EECCchHHHHHhCCccccCCCcccceEEEECCCCeE
Confidence 9999999976321 122 222233322111 11222 23656789999999743 67899999999999
Q ss_pred EEcccCCC----CHHHHHHHHHH
Q 024610 239 RWQGFGMA----TPEELSSLLSC 257 (265)
Q Consensus 239 RWagsG~a----t~~E~e~L~k~ 257 (265)
|+...|.. +.+|+..+.+.
T Consensus 137 ~~~~~~~~~~gr~~~Ellr~I~a 159 (249)
T 3a2v_A 137 RTMLYYPMELGRLVDEILRIVKA 159 (249)
T ss_dssp EEEEEECTTBCCCHHHHHHHHHH
T ss_pred EEEEecCCcccchhHHHHHHHHH
Confidence 99998875 35665554444
No 97
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=98.29 E-value=1.7e-06 Score=71.84 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=77.4
Q ss_pred cccCCCceee-CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-hh---cc------CCC
Q 024610 95 AVKFPDLDVS-YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-AF---SD------SKN 163 (265)
Q Consensus 95 AlyFPnl~~~-~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-~~---~~------~~~ 163 (265)
....|+|.+. +.+|+++++.+ .++||+.||.+ ++ ++||.+|.. .. .+ ..+
T Consensus 6 G~~aP~f~l~~~~~G~~v~L~d-----------~~~Gk~vvl~f-~~-------a~wcp~C~~~e~p~l~~~~~~~~~~g 66 (167)
T 2wfc_A 6 GDKLPAVTVFGATPNDKVNMAE-----------LFAGKKGVLFA-VP-------GAFTPGSSKTHLPGYVEQAAAIHGKG 66 (167)
T ss_dssp TCBCCCCEEESSSTTCEEEHHH-----------HTTTSEEEEEE-ES-------CTTCHHHHHTHHHHHHHTHHHHHHTT
T ss_pred CCcCCCcEeecCCCCcEEeHHH-----------HhCCCcEEEEE-eC-------CCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 4568999999 99999988653 22688766643 34 789998875 32 11 247
Q ss_pred e-eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccEEEEEe
Q 024610 164 V-HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGYIFLLD 233 (265)
Q Consensus 164 v-qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGYVyLVD 233 (265)
+ ++|-||+++... ++.+ .. +.+++. . ..+ ..+....+-+++|+... ..+++|||
T Consensus 67 v~~vv~Is~d~~~~-----~~~~-~~--~~~~~~-~-----fp~-l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI- 130 (167)
T 2wfc_A 67 VDIIACMAVNDSFV-----MDAW-GK--AHGADD-K-----VQM-LADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI- 130 (167)
T ss_dssp CCEEEEEESSCHHH-----HHHH-HH--HTTCTT-T-----SEE-EECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-
T ss_pred CCEEEEEeCCCHHH-----HHHH-HH--hcCCCc-c-----eEE-EECCCCcHHHHcCCccccccccCcccceEEEEEE-
Confidence 9 999999875321 2332 11 112321 1 222 24666788899998753 24899999
Q ss_pred CCCcEEEcccCCC
Q 024610 234 KFGRIRWQGFGMA 246 (265)
Q Consensus 234 ~~grIRWagsG~a 246 (265)
++|+|||..-|..
T Consensus 131 ~~G~I~~~~~~~~ 143 (167)
T 2wfc_A 131 EDGVVTKVNVEPD 143 (167)
T ss_dssp ETTEEEEEEECTT
T ss_pred eCCEEEEEEecCC
Confidence 8999999988763
No 98
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=98.23 E-value=1e-05 Score=74.43 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=83.7
Q ss_pred cCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH---hh--ccCCCeeEEEEec
Q 024610 97 KFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE---AF--SDSKNVHLYEVSF 171 (265)
Q Consensus 97 yFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e---~~--~~~~~vqiv~In~ 171 (265)
.-|+|++.+.+|+++++.+ ++||+.|| +|+. ..||-.|.. .| ....+++++-||.
T Consensus 3 k~p~F~l~~~~G~~~~Lsd------------~~Gk~vvl--~F~p------~~~tp~C~~e~~~~~~~~~~~~~v~gis~ 62 (322)
T 4eo3_A 3 RVKHFELLTDEGKTFTHVD------------LYGKYTIL--FFFP------KAGTSGSTREAVEFSRENFEKAQVVGISR 62 (322)
T ss_dssp BCCCCEEEETTSCEEEGGG------------TTTSEEEE--EECS------STTSHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCCCcEEECCCcCEEeHHH------------hCCCeEEE--EEEC------CCCCCCCHHHHHHHHHHhhCCCEEEEEeC
Confidence 3699999999999998753 47998666 4543 234433431 23 2235799999998
Q ss_pred ccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC--cccEEEEEeCCCcEEEcccCCCCHH
Q 024610 172 IDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL--LTGYIFLLDKFGRIRWQGFGMATPE 249 (265)
Q Consensus 172 ~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~--~vGYVyLVD~~grIRWagsG~at~~ 249 (265)
+.-.. .+.+ .. +.+++ ..+ ..|....+-+++|+... ...-+||||++|+||+.-.+-.++.
T Consensus 63 D~~~~-----~~~f-~~--~~~l~--------fp~-l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~ 125 (322)
T 4eo3_A 63 DSVEA-----LKRF-KE--KNDLK--------VTL-LSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEG 125 (322)
T ss_dssp CCHHH-----HHHH-HH--HHTCC--------SEE-EECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTT
T ss_pred CCHHH-----HHHH-HH--hhCCc--------eEE-EEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccc
Confidence 64221 2332 11 11222 222 24667789999998652 2346899999999997766766666
Q ss_pred HHHHHHHHHHhhhc
Q 024610 250 ELSSLLSCTSLLLE 263 (265)
Q Consensus 250 E~e~L~k~~~~Ll~ 263 (265)
-.+-+...++.|++
T Consensus 126 h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 126 HVQEVKEALDRLIE 139 (322)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhch
Confidence 66666666666654
No 99
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=97.99 E-value=1.1e-05 Score=69.98 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=75.3
Q ss_pred cccCCCceeeCC-CCC--eeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH-Hh---hc------cC
Q 024610 95 AVKFPDLDVSYS-DRT--TLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF-EA---FS------DS 161 (265)
Q Consensus 95 AlyFPnl~~~~l-~G~--tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~-e~---~~------~~ 161 (265)
+...|+|.+.++ +|+ ++++.+ .++||+.||.+| + ++||.+|. .. +. ..
T Consensus 6 G~~aP~f~l~~~~~g~~~~v~l~~-----------~~~gk~vvl~f~-~-------a~~cp~C~~~e~~~l~~~~~~~~~ 66 (241)
T 1nm3_A 6 GKKVPQVTFRTRQGDKWVDVTTSE-----------LFDNKTVIVFSL-P-------GAFTPTCSSSHLPRYNELAPVFKK 66 (241)
T ss_dssp TSBCCCCEEEEEETTEEEEEEHHH-----------HHTTSEEEEEEE-S-------CSSCHHHHHTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEcccCCCceeecHHH-----------HhCCCeEEEEEe-C-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456899999987 777 776542 146898777443 2 78999987 32 11 12
Q ss_pred CCe-eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccEEEE
Q 024610 162 KNV-HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGYIFL 231 (265)
Q Consensus 162 ~~v-qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGYVyL 231 (265)
.++ ++|-||+++... ++.+ .+..+.. ...+ ..+....+-+++|+... ..+++||
T Consensus 67 ~~~~~vv~is~d~~~~-----~~~~-----~~~~~~~-----~~~~-l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~l 130 (241)
T 1nm3_A 67 YGVDDILVVSVNDTFV-----MNAW-----KEDEKSE-----NISF-IPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSML 130 (241)
T ss_dssp TTCCEEEEEESSCHHH-----HHHH-----HHHTTCT-----TSEE-EECTTSHHHHHTTCEEECTTTTCCEEECCEEEE
T ss_pred CCCCEEEEEEcCCHHH-----HHHH-----HHhcCCC-----ceEE-EECCCcHHHHHhCceeecccccCcccceeEEEE
Confidence 479 999999875321 2332 1212211 1222 24666778899998742 2368999
Q ss_pred EeCCCcEEEcccCCCC
Q 024610 232 LDKFGRIRWQGFGMAT 247 (265)
Q Consensus 232 VD~~grIRWagsG~at 247 (265)
| ++|+||+...|...
T Consensus 131 i-~~G~i~~~~~~~~~ 145 (241)
T 1nm3_A 131 V-KNGVVEKMFIEPNE 145 (241)
T ss_dssp E-ETTEEEEEEECCSC
T ss_pred E-ECCEEEEEEEeccC
Confidence 9 89999999988643
No 100
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=97.99 E-value=1.9e-05 Score=65.40 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=73.0
Q ss_pred ccCCCceeeCC----CC-----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh-h---cc--
Q 024610 96 VKFPDLDVSYS----DR-----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA-F---SD-- 160 (265)
Q Consensus 96 lyFPnl~~~~l----~G-----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-~---~~-- 160 (265)
...|+|.+.++ +| +++++.+ .++||..|| ++|| ++||.+|... . .+
T Consensus 11 ~~aP~f~l~~~~~~~~G~~~~~~~v~l~~-----------~~~gk~vvl-~~~~-------a~wcp~C~~eh~p~l~~~~ 71 (171)
T 2pwj_A 11 SAASNVSLQKARTWDEGVESKFSTTPVND-----------IFKDKKVVI-FGLP-------GAYTGVCSSKHVPPYKHNI 71 (171)
T ss_dssp CCSSSBCCCSCEECCCSSCTTCCCEEHHH-----------HHTTSEEEE-EECS-------CTTCTTHHHHTHHHHHHTH
T ss_pred CcCCCeEEecccccccCCccCcceEEHHH-----------HhCCCCEEE-EEec-------CCCCCCCCHHHHHHHHHHH
Confidence 36899998887 47 7776542 225764333 3556 8999999754 2 11
Q ss_pred ----CCCee-EEEEecccchhhccccchHHHHHHHHh-cCCCCCccccceeEEEcCChHHHHHHhcccCCc---------
Q 024610 161 ----SKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRK-SKDAGENVLQRQIVYSFGDHYYFRKELKILNLL--------- 225 (265)
Q Consensus 161 ----~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk-~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~--------- 225 (265)
..+++ +|-||+++... ++.+ +++ +++. ...+ ..+....+-+++|+....
T Consensus 72 ~~~~~~g~~~vv~Is~d~~~~-----~~~~----~~~~~~~~------~fp~-l~D~~~~~~~~ygv~~~~~~~~~g~~~ 135 (171)
T 2pwj_A 72 DKFKAKGVDSVICVAINDPYT-----VNAW----AEKIQAKD------AIEF-YGDFDGSFHKSLELTTDLSAGLLGIRS 135 (171)
T ss_dssp HHHHHTTCSEEEEEESSCHHH-----HHHH----HHHTTCTT------TSEE-EECTTCHHHHHHTCEEECTTTTCCEEE
T ss_pred HHHHHCCCCEEEEEeCCCHHH-----HHHH----HHHhCCCC------ceEE-EECCccHHHHHhCCccccccccCCccc
Confidence 14788 99999976321 2332 111 2210 1222 246677888999987532
Q ss_pred ccEEEEEeCCCcEEEcccCCC
Q 024610 226 TGYIFLLDKFGRIRWQGFGMA 246 (265)
Q Consensus 226 vGYVyLVD~~grIRWagsG~a 246 (265)
..++|+|| +|+|||...|..
T Consensus 136 ~~~t~~I~-~G~I~~~~~~~~ 155 (171)
T 2pwj_A 136 ERWSAYVV-DGKVKALNVEES 155 (171)
T ss_dssp CCEEEEEE-TTEEEEEEECSS
T ss_pred ceeEEEEE-CCEEEEEEeecC
Confidence 34899999 999999988864
No 101
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=97.94 E-value=4.9e-05 Score=58.55 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+++.. ++.++++|++|++++...|..+.+++..+.+
T Consensus 72 ~~~~~~~~v~~--~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~ 113 (126)
T 2l57_A 72 IDLAYKYDANI--VPTTVFLDKEGNKFYVHQGLMRKNNIETILN 113 (126)
T ss_dssp HHHHHHTTCCS--SSEEEEECTTCCEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHcCCcc--eeEEEEECCCCCEEEEecCCCCHHHHHHHHH
Confidence 45667777764 9999999999999999999999888765543
No 102
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0003 Score=61.53 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=78.1
Q ss_pred cccccCCCceee---CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH----------hhc
Q 024610 93 LAAVKFPDLDVS---YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFS 159 (265)
Q Consensus 93 ~~AlyFPnl~~~---~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~ 159 (265)
.-...-|+|++. +-+|+++++.+ ++||..|+ +|.. ..||-.|.. .|.
T Consensus 24 ~VG~~APdF~l~a~~d~~~~~vsLsd------------~~GK~vVL--~FyP------~d~TpvCt~E~~~f~~~~~~f~ 83 (216)
T 3sbc_A 24 QVQKQAPTFKKTAVVDGVFDEVSLDK------------YKGKYVVL--AFIP------LAFTFVSPTEIIAFSEAAKKFE 83 (216)
T ss_dssp CTTSBCCCCCEEEEETTEEEEECGGG------------GTTSEEEE--EECS------CTTSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCcCCCCCCcceECCCCcEEehHH------------hCCCeEEE--EEEc------CCCCCcCchhhhHHHHhHHhhc
Confidence 345568999865 44556776542 47997665 4443 566666552 233
Q ss_pred cCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeCC
Q 024610 160 DSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDKF 235 (265)
Q Consensus 160 ~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~~ 235 (265)
+ .+++++-||++.-.. -+.| ....+....-.. ....+ ..+...++-+++|+.+...|. +||||++
T Consensus 84 ~-~g~~vigiS~Ds~~s-----h~aw-~~~~~~~~~~~~---l~fpl-lsD~~~~vak~YGv~~~~~g~~~R~tFiID~~ 152 (216)
T 3sbc_A 84 E-QGAQVLFASTDSEYS-----LLAW-TNIPRKEGGLGP---INIPL-LADTNHSLSRDYGVLIEEEGVALRGLFIIDPK 152 (216)
T ss_dssp H-TTEEEEEEESSCHHH-----HHHH-HTSCGGGTCCCS---CSSCE-EECTTSHHHHHHTCEETTTTEECEEEEEECTT
T ss_pred c-CCceEEEeecCchhh-----HHHH-HHHHHHhCCccC---cccce-EeCCCCHHHHHcCCeeccCCceeeEEEEECCC
Confidence 2 479999999976322 1111 111111111000 12233 235678899999998776666 9999999
Q ss_pred CcEEEcccCC----CCHHHHHHHHHHH
Q 024610 236 GRIRWQGFGM----ATPEELSSLLSCT 258 (265)
Q Consensus 236 grIRWagsG~----at~~E~e~L~k~~ 258 (265)
|+|||.---. ...+|+-...++.
T Consensus 153 G~Ir~~~v~~~~~grn~dEiLr~l~Al 179 (216)
T 3sbc_A 153 GVIRHITINDLPVGRNVDEALRLVEAF 179 (216)
T ss_dssp SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9999976332 2345544444443
No 103
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=97.55 E-value=0.00038 Score=53.97 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=35.3
Q ss_pred hHHHHHHhcccC-CcccEEEEEeCCCcEEEcccC-------CCCHHHHHHHHHH
Q 024610 212 HYYFRKELKILN-LLTGYIFLLDKFGRIRWQGFG-------MATPEELSSLLSC 257 (265)
Q Consensus 212 ~~~iRe~Lgi~N-~~vGYVyLVD~~grIRWagsG-------~at~~E~e~L~k~ 257 (265)
..++.+.+++.. ..++.++++|.+|++.+...| ..+.++++.+.+-
T Consensus 77 ~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 77 NLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAK 130 (133)
T ss_dssp SHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred hHHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence 355777788721 249999999999999999999 6677777766544
No 104
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=97.54 E-value=0.00043 Score=60.61 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=71.5
Q ss_pred cccccCCCceee----CCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhh
Q 024610 93 LAAVKFPDLDVS----YSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAF 158 (265)
Q Consensus 93 ~~AlyFPnl~~~----~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~ 158 (265)
.-...-|+|++. +-+|+++++.+ ++||..|+ +|.. ..||-.|. +.|
T Consensus 27 ~vG~~APdF~~~a~l~d~~g~~vsLsd------------~~GK~vVL--~FyP------~d~TpvCt~E~~~f~~~~~eF 86 (219)
T 3tue_A 27 KINSPAPSFEEVALMPNGSFKKISLSS------------YKGKWVVL--FFYP------LDFTFVCPTEVIAFSDSVSRF 86 (219)
T ss_dssp CTTSBCCCCEEEEECTTSCEEEEEGGG------------GTTSEEEE--EECS------CTTCSSCCHHHHHHHTTHHHH
T ss_pred ccCCcCCCCcccccccCCCCcEEehHH------------hCCCEEEE--EEec------ccCCCCCchhHhhHHHHHhhh
Confidence 445567999743 55777887653 46897555 4432 45555443 233
Q ss_pred ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccE----EEEEeC
Q 024610 159 SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGY----IFLLDK 234 (265)
Q Consensus 159 ~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGY----VyLVD~ 234 (265)
.+ -++++|-||.+.-.. -+.|..+ .+....... ....+ ..+...++-+++|+.....|+ +||||+
T Consensus 87 ~~-~g~~vigiS~Ds~~s-----h~~w~~~-~~~~~~~~~---l~fpl-lsD~~~~va~~yGv~~~~~g~~~R~tFiIDp 155 (219)
T 3tue_A 87 NE-LNCEVLACSIDSEYA-----HLQWTLQ-DRKKGGLGT---MAIPI-LADKTKNIARSYGVLEESQGVAYRGLFIIDP 155 (219)
T ss_dssp HT-TTEEEEEEESSCHHH-----HHHHHHS-CGGGTCCCS---CSSCE-EECTTSHHHHHTTCEETTTTEECEEEEEECT
T ss_pred cc-CCcEEEEeeCCchhh-----HHHHhhh-hHHhcCccc---ccccc-ccCcccHHHHHcCCcccCCCeeEEEEEEECC
Confidence 33 379999999987332 1122111 111111100 11223 236678899999998776665 799999
Q ss_pred CCcEEEcc
Q 024610 235 FGRIRWQG 242 (265)
Q Consensus 235 ~grIRWag 242 (265)
+|+|||.-
T Consensus 156 ~g~Ir~~~ 163 (219)
T 3tue_A 156 HGMLRQIT 163 (219)
T ss_dssp TSBEEEEE
T ss_pred CCeEEEEE
Confidence 99999986
No 105
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=97.49 E-value=0.00017 Score=58.63 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=65.7
Q ss_pred CCCceEEEEEeeeccchHHHhhhcchhHHh---------hcc--CCCeeEEEEecccchhhccccchHHHHHHHHhcCCC
Q 024610 128 AIPKVSLVCLTFRASSQAMVDSWSSPFFEA---------FSD--SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDA 196 (265)
Q Consensus 128 l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---------~~~--~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~ 196 (265)
.+||+.||-++ ++||.||... +.+ ..++.++.|+++++.-... ... ....
T Consensus 45 ~~gk~vlv~F~---------A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~--~~~--------~~~~ 105 (172)
T 3f9u_A 45 QHNKPVMLDFT---------GYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTE--PVK--------IMEN 105 (172)
T ss_dssp HTTCCEEEEEE---------CTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEE--EEE--------EEET
T ss_pred HcCCeEEEEEE---------CCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccch--hhh--------hhhc
Confidence 35899888666 9999999742 111 1268999999987531110 000 0000
Q ss_pred CCccccceeEEEcCC-hHHH-HHHhcccCCcccEEEEEeCCCcEEEcccCCCC-HHHHHH-HHHHHHh
Q 024610 197 GENVLQRQIVYSFGD-HYYF-RKELKILNLLTGYIFLLDKFGRIRWQGFGMAT-PEELSS-LLSCTSL 260 (265)
Q Consensus 197 ~~~~l~~~~~y~~g~-~~~i-Re~Lgi~N~~vGYVyLVD~~grIRWagsG~at-~~E~e~-L~k~~~~ 260 (265)
. ....+..+++ ...+ .+.+++. -+|.++|+|++|+|++...|+.+ ++++.. |.+.++.
T Consensus 106 ~----~~~~~~~~~~~~~~~~~~~~~v~--~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~ 167 (172)
T 3f9u_A 106 G----TERTLRTVGDKWSYLQRVKFGAN--AQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLEN 167 (172)
T ss_dssp T----EEEEEEEHHHHHHHHHHHHHSCC--CSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHH
T ss_pred c----hhhhhhhhhhhhhHHHHHHcCCC--CcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHH
Confidence 0 0011111222 1222 5778887 59999999999999999999998 777644 3444443
No 106
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=97.48 E-value=0.00029 Score=55.25 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHhh----------ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCC
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAF----------SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGE 198 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~----------~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~ 198 (265)
+||+.||-++ ++||.+|.... ...+++.++.|++.++.
T Consensus 30 ~~k~vlv~F~---------a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~----------------------- 77 (134)
T 2fwh_A 30 KGKPVMLDLY---------ADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND----------------------- 77 (134)
T ss_dssp TTSCEEEEEE---------CTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC-----------------------
T ss_pred cCCcEEEEEE---------CCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCc-----------------------
Confidence 4788888666 89999997421 11234666666654310
Q ss_pred ccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE--EcccCCCCHHHHHHHHH
Q 024610 199 NVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR--WQGFGMATPEELSSLLS 256 (265)
Q Consensus 199 ~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR--WagsG~at~~E~e~L~k 256 (265)
+...++.+.+|+.- ++.++++|.+|+|. +...|+.++++++.+.+
T Consensus 78 -----------~~~~~l~~~~~v~~--~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~ 124 (134)
T 2fwh_A 78 -----------AQDVALLKHLNVLG--LPTILFFDGQGQEHPQARVTGFMDAETFSAHLR 124 (134)
T ss_dssp -----------HHHHHHHHHTTCCS--SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHH
T ss_pred -----------chHHHHHHHcCCCC--CCEEEEECCCCCEeeeeeeeeccCHHHHHHHHH
Confidence 11245677788875 99999999999998 89999999999876654
No 107
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.0009 Score=51.34 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=36.2
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
...+.+.+|+.. +|.++++|.+|++.+.-.|..+++++....+
T Consensus 75 ~~~~~~~~~v~~--~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~ 117 (130)
T 2kuc_A 75 GVELRKKYGVHA--YPTLLFINSSGEVVYRLVGAEDAPELLKKVK 117 (130)
T ss_dssp HHHHHHHTTCCS--SCEEEEECTTSCEEEEEESCCCHHHHHHHHH
T ss_pred hHHHHHHcCCCC--CCEEEEECCCCcEEEEecCCCCHHHHHHHHH
Confidence 567888999985 9999999999999999999998887665443
No 108
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=97.16 E-value=0.00061 Score=57.68 Aligned_cols=127 Identities=8% Similarity=0.089 Sum_probs=72.4
Q ss_pred ccccCCCceeeCCCC-CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHH-----------hhccC
Q 024610 94 AAVKFPDLDVSYSDR-TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFE-----------AFSDS 161 (265)
Q Consensus 94 ~AlyFPnl~~~~l~G-~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e-----------~~~~~ 161 (265)
....+|+++.+.+.+ ....-+. .....++.+.++||..|+ +|++ ..||.+|.. .|++
T Consensus 12 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~vsLsd~~~Gk~vVL-~fyP-------~~~tp~Ct~~El~~f~~~~~ef~~- 80 (176)
T 4f82_A 12 VGDALPDAQLFEFIDDAREGCTL--GPNACSVRDQVAGKRVVI-FGLP-------GAFTPTCSAQHVPGYVEHAEQLRA- 80 (176)
T ss_dssp TTCBCCCCEEEEEECSCCTTCCS--EEEEEEHHHHHTTCEEEE-EEES-------CTTCHHHHHTHHHHHHHHHHHHHH-
T ss_pred cCCcCCceEEEEecccccccccC--CceEEeHHHHhCCCeEEE-EEEc-------CCCCCCCCHHHHHHHHHHHHHHHh-
Confidence 356789988776644 1000000 000122333457886444 4556 778887754 2222
Q ss_pred CCe-eEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCC---------cccEEEE
Q 024610 162 KNV-HLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNL---------LTGYIFL 231 (265)
Q Consensus 162 ~~v-qiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~---------~vGYVyL 231 (265)
.++ ++|-||+++-.. .+.|. . +.+++. + ..+ ..+...++-+++|+... ...++||
T Consensus 81 ~g~d~VigIS~D~~~~-----~~~f~-~--~~~l~~-~-----f~l-LsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfI 145 (176)
T 4f82_A 81 AGIDEIWCVSVNDAFV-----MGAWG-R--DLHTAG-K-----VRM-MADGSAAFTHALGLTQDLSARGMGIRSLRYAMV 145 (176)
T ss_dssp TTCCEEEEEESSCHHH-----HHHHH-H--HTTCTT-T-----SEE-EECTTCHHHHHHTCEEECGGGTCCEEECCEEEE
T ss_pred CCCCEEEEEeCCCHHH-----HHHHH-H--HhCCCC-C-----ceE-EEcCchHHHHHhCCCccccccCCCcccccEEEE
Confidence 468 999999987332 23331 1 112221 1 222 23556789999998643 2468999
Q ss_pred EeCCCcEEEcccCCCC
Q 024610 232 LDKFGRIRWQGFGMAT 247 (265)
Q Consensus 232 VD~~grIRWagsG~at 247 (265)
| ++|+|||...+.+.
T Consensus 146 I-~dG~I~~~~~~~~~ 160 (176)
T 4f82_A 146 I-DGGVVKTLAVEAPG 160 (176)
T ss_dssp E-ETTEEEEEEECCTT
T ss_pred E-cCCEEEEEEEcCCC
Confidence 9 89999999997643
No 109
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=97.04 E-value=0.0014 Score=52.71 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=60.8
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh---h------cc--CCCeeEEEEecccchhhccccchHHHHHHHHhcCCCC
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA---F------SD--SKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAG 197 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~---~------~~--~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~ 197 (265)
+||+.||-++ . ++||.||... + .+ ..++.+|.|++++..- ++.
T Consensus 46 ~gk~vlv~F~-g-------a~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~-----------------~~~- 99 (154)
T 2ju5_A 46 DHKPIGLFFT-G-------SDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNH-----------------QPE- 99 (154)
T ss_dssp HCCCEEEEEE-C-------TTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCC-----------------CCH-
T ss_pred CCCeEEEEEe-C-------CCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccC-----------------CCh-
Confidence 4888877553 1 6899998742 2 11 1357788887766320 110
Q ss_pred CccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC--CHHHHHHHHHHHHhhhc
Q 024610 198 ENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA--TPEELSSLLSCTSLLLE 263 (265)
Q Consensus 198 ~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a--t~~E~e~L~k~~~~Ll~ 263 (265)
. ..+...++.+.+++.- +|.++|+|++|+|++.. |+. +.+++ .+.++.+++
T Consensus 100 -------~--~~~~~~~l~~~~~v~~--~Pt~~~~d~~G~~~~~~-G~~~~~~~~l---~~~l~~~l~ 152 (154)
T 2ju5_A 100 -------E--QRQKNQELKAQYKVTG--FPELVFIDAEGKQLARM-GFEPGGGAAY---VSKVKSALK 152 (154)
T ss_dssp -------H--HHHHHHHHHHHTTCCS--SSEEEEECTTCCEEEEE-CCCTTCHHHH---HHHHHHHHT
T ss_pred -------h--hHhhHHHHHHHcCCCC--CCEEEEEcCCCCEEEEe-cCCCCCHHHH---HHHHHHHHh
Confidence 0 0133456788889885 99999999999999999 988 55554 334444544
No 110
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=97.04 E-value=0.0053 Score=47.26 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.- +|-+++++ +|++.+...|..+.+++....
T Consensus 86 ~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l 125 (128)
T 3ul3_B 86 ESLARKFSVKS--LPTIILLK-NKTMLARKDHFVSSNDLIALI 125 (128)
T ss_dssp HHHHHHTTCCS--SSEEEEEE-TTEEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHcCCCC--cCEEEEEE-CCEEEEEecCCCCHHHHHHHH
Confidence 45667777774 88888885 999999999999999887653
No 111
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=96.94 E-value=0.0077 Score=44.76 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=51.4
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHhh-------ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.|++.||-++ ++||.+|.... ...+++.++.|++.+
T Consensus 23 ~~~~vlv~f~---------a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~---------------------------- 65 (111)
T 2pu9_C 23 GDKPVVLDMF---------TQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQ---------------------------- 65 (111)
T ss_dssp TTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSS----------------------------
T ss_pred CCCEEEEEEE---------CCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCc----------------------------
Confidence 4788888666 89999987421 223445555555432
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
...++.+.+++.. +|- ++++.+|++.+...|.. +++++.+.
T Consensus 66 ---------~~~~~~~~~~v~~--~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~l 106 (111)
T 2pu9_C 66 ---------ENKTLAKELGIRV--VPT-FKILKENSVVGEVTGAK-YDKLLEAI 106 (111)
T ss_dssp ---------TTHHHHHHHCCSB--SSE-EEEESSSSEEEEEESSC-HHHHHHHH
T ss_pred ---------chHHHHHHcCCCe--eeE-EEEEeCCcEEEEEcCCC-HHHHHHHH
Confidence 2345667778775 776 77889999999988984 66655443
No 112
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=96.94 E-value=0.0063 Score=45.66 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=34.4
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++.+.+|+.. +|.++++ .+|++.+...|+.++++++.+..
T Consensus 61 ~~~l~~~~~v~~--~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~ 102 (110)
T 2l6c_A 61 RPELMKELGFER--VPTLVFI-RDGKVAKVFSGIMNPRELQALYA 102 (110)
T ss_dssp CHHHHHHTTCCS--SCEEEEE-ESSSEEEEEESCCCHHHHHHHHH
T ss_pred CHHHHHHcCCcc--cCEEEEE-ECCEEEEEEcCCCCHHHHHHHHH
Confidence 355677788875 8999998 69999999999999999876654
No 113
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=96.90 E-value=0.0054 Score=45.35 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=50.4
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.+++.||-++ ++||.||.. .+ ...+++.++.|+++++
T Consensus 17 ~~~~vlv~f~---------a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~--------------------------- 60 (105)
T 4euy_A 17 EQQLVLLFIK---------TENCGVCDVMLRKVNYVLENYNYVEKIEILLQDM--------------------------- 60 (105)
T ss_dssp CSSEEEEEEE---------ESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------------------------
T ss_pred cCCCEEEEEe---------CCCCcchHHHHHHHHHHHHHcCCceEEEEECCCC---------------------------
Confidence 5788888666 899999873 12 2335677777776552
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|-+++++ +|++.+...|..+.+++....
T Consensus 61 -----------~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l 100 (105)
T 4euy_A 61 -----------QEIAGRYAVFT--GPTVLLFY-NGKEILRESRFISLENLERTI 100 (105)
T ss_dssp --------------------CC--CCEEEEEE-TTEEEEEEESSCCHHHHHHHH
T ss_pred -----------HHHHHhcCCCC--CCEEEEEe-CCeEEEEEeCCcCHHHHHHHH
Confidence 12334455554 78888886 999999999999988876554
No 114
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=96.86 E-value=0.013 Score=45.36 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+...++.+.+|+.- +|.++++|.+|+|. ...|..+.+++..+.
T Consensus 92 ~~~~~~~~~~~v~~--~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l 134 (141)
T 3hxs_A 92 DKEPELARDFGIQS--IPTIWFVPMKGEPQ-VNMGALSKEQLKGYI 134 (141)
T ss_dssp TTCHHHHHHTTCCS--SSEEEEECSSSCCE-EEESCCCHHHHHHHH
T ss_pred CCCHHHHHHcCCCC--cCEEEEEeCCCCEE-EEeCCCCHHHHHHHH
Confidence 33455677788875 99999999999987 778888888766543
No 115
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=96.84 E-value=0.0075 Score=48.15 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=53.9
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ 202 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~ 202 (265)
|++.||-++ ++||.+|... + ...+++.++.|++++
T Consensus 32 ~~~vvv~F~---------a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~----------------------------- 73 (153)
T 2wz9_A 32 KSLLVVHFW---------APWAPQCAQMNEVMAELAKELPQVSFVKLEAEG----------------------------- 73 (153)
T ss_dssp TSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT-----------------------------
T ss_pred CCeEEEEEE---------CCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCC-----------------------------
Confidence 788888666 8999999742 1 222445555555433
Q ss_pred ceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 203 RQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 203 ~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
..++.+.+++.. +|.++++| +|++.+...|. ++++ |.+.++.++.
T Consensus 74 ---------~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~-~~~~---l~~~i~~~l~ 118 (153)
T 2wz9_A 74 ---------VPEVSEKYEISS--VPTFLFFK-NSQKIDRLDGA-HAPE---LTKKVQRHAS 118 (153)
T ss_dssp ---------SHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESS-CHHH---HHHHHHHHSC
T ss_pred ---------CHHHHHHcCCCC--CCEEEEEE-CCEEEEEEeCC-CHHH---HHHHHHHHhc
Confidence 345667778775 99999999 99999988885 5555 4444444443
No 116
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=96.79 E-value=0.0099 Score=44.48 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=30.4
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+++.. +|.+++++ +|++.....|. ++++++.+.
T Consensus 66 ~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i 105 (109)
T 3f3q_A 66 LGDVAQKNEVSA--MPTLLLFK-NGKEVAKVVGA-NPAAIKQAI 105 (109)
T ss_dssp CHHHHHHTTCCS--SSEEEEEE-TTEEEEEEESS-CHHHHHHHH
T ss_pred CHHHHHHcCCCc--cCEEEEEE-CCEEEEEEeCC-CHHHHHHHH
Confidence 355667778875 88888888 99999999998 666665443
No 117
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=96.73 E-value=0.01 Score=45.02 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=50.9
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHhh-------ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.|++.||-++ ++||.+|.+.. ...+++.++.|+..+
T Consensus 36 ~~~~~vv~f~---------a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~---------------------------- 78 (124)
T 1faa_A 36 GDKPVVLDMF---------TQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQ---------------------------- 78 (124)
T ss_dssp TTSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSS----------------------------
T ss_pred CCCEEEEEEE---------CCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCc----------------------------
Confidence 5788888666 89999997421 222345555555432
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
...++.+.+|+.. +|- ++++.+|++.+...|.. ++++..+.
T Consensus 79 ---------~~~~~~~~~~v~~--~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~i 119 (124)
T 1faa_A 79 ---------ENKTLAKELGIRV--VPT-FKILKENSVVGEVTGAK-YDKLLEAI 119 (124)
T ss_dssp ---------TTHHHHHHHCCSS--SSE-EEEEETTEEEEEEESSC-HHHHHHHH
T ss_pred ---------chHHHHHHcCCCe--eeE-EEEEeCCcEEEEEcCCC-HHHHHHHH
Confidence 1345667778875 775 66678999999999986 66655443
No 118
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=96.72 E-value=0.0077 Score=47.10 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=29.4
Q ss_pred ChHHHHHHhcccCCcccEEEEE-eCCCc--EEEcccCCCCHHHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLL-DKFGR--IRWQGFGMATPEELSSLL 255 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLV-D~~gr--IRWagsG~at~~E~e~L~ 255 (265)
...++.+.+++.. +|.++++ |.+|+ +.....|. +++++..+.
T Consensus 80 ~~~~l~~~~~v~~--~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l 124 (133)
T 3cxg_A 80 IHPKLNDQHNIKA--LPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAF 124 (133)
T ss_dssp TCHHHHHHTTCCS--SSEEEEEEEETTEEEEEEEEESC-CHHHHHHHH
T ss_pred chHHHHHhcCCCC--CCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHH
Confidence 3456777888875 8888888 44555 98888888 666655443
No 119
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=96.71 E-value=0.008 Score=46.62 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=51.5
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh-------hccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA-------FSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~-------~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.||+.||-++ ++||.+|... ....+++.++.|++++
T Consensus 45 ~~k~vvv~f~---------a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~---------------------------- 87 (139)
T 3d22_A 45 DGKIVLANFS---------ARWCGPSRQIAPYYIELSENYPSLMFLVIDVDE---------------------------- 87 (139)
T ss_dssp HTCCEEEEEE---------CTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTT----------------------------
T ss_pred cCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcc----------------------------
Confidence 4788888665 8999998742 1223456666666543
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+|+.. +|.++++ .+|++.+...|. ++++++.+.
T Consensus 88 ----------~~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l 127 (139)
T 3d22_A 88 ----------LSDFSASWEIKA--TPTFFFL-RDGQQVDKLVGA-NKPELHKKI 127 (139)
T ss_dssp ----------SHHHHHHTTCCE--ESEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred ----------cHHHHHHcCCCc--ccEEEEE-cCCeEEEEEeCC-CHHHHHHHH
Confidence 244566677764 7776666 799999999998 777765543
No 120
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=96.66 E-value=0.017 Score=43.72 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=53.3
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.||+.||-++ ++||.+|... + ...+++.++.|++++
T Consensus 30 ~~k~vlv~F~---------a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---------------------------- 72 (116)
T 3qfa_C 30 GDKLVVVDFS---------ATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDD---------------------------- 72 (116)
T ss_dssp TTSCEEEEEE---------CTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTT----------------------------
T ss_pred CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC----------------------------
Confidence 5889998666 8999998742 1 223446666666543
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+++.. +|-++++ .+|++.....|. ++++++.+.
T Consensus 73 ----------~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l 112 (116)
T 3qfa_C 73 ----------CQDVASECEVKS--MPTFQFF-KKGQKVGEFSGA-NKEKLEATI 112 (116)
T ss_dssp ----------THHHHHHTTCCS--SSEEEEE-SSSSEEEEEESC-CHHHHHHHH
T ss_pred ----------CHHHHHHcCCcc--ccEEEEE-eCCeEEEEEcCC-CHHHHHHHH
Confidence 244667777775 7777666 699999999998 887776554
No 121
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=96.58 E-value=0.018 Score=43.59 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.5
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++-+.+||.- +|-+++. .+|++...-.| ++++++..+.
T Consensus 63 ~~l~~~~~V~~--~PT~~~~-~~G~~v~~~~G-~~~~~l~~~i 101 (105)
T 3zzx_A 63 EDIAQDNQIAC--MPTFLFM-KNGQKLDSLSG-ANYDKLLELV 101 (105)
T ss_dssp HHHHHHTTCCB--SSEEEEE-ETTEEEEEEES-CCHHHHHHHH
T ss_pred HHHHHHcCCCe--ecEEEEE-ECCEEEEEEeC-cCHHHHHHHH
Confidence 45667777775 7755555 59999999899 5777765543
No 122
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=96.56 E-value=0.02 Score=41.62 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
++.+.+++.. +|.++++ .+|++.+...|..+.+++..+.+
T Consensus 65 ~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 104 (107)
T 2i4a_A 65 ETPNAYQVRS--IPTLMLV-RDGKVIDKKVGALPKSQLKAWVE 104 (107)
T ss_dssp HHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHhcCCCc--cCEEEEE-eCCEEEEEecCCCCHHHHHHHHH
Confidence 4556677775 8888888 79999999999999888766543
No 123
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=96.52 E-value=0.02 Score=44.00 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=26.7
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+++.. +|-++++ .+|++.+...| +++++++.+
T Consensus 81 ~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~ 118 (124)
T 1xfl_A 81 KSVASDWAIQA--MPTFMFL-KEGKILDKVVG-AKKDELQST 118 (124)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-CCHHHHHHH
T ss_pred HHHHHHcCCCc--cCEEEEE-ECCEEEEEEeC-CCHHHHHHH
Confidence 45667777775 7765544 79999999899 477665544
No 124
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=96.52 E-value=0.019 Score=42.76 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=27.7
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|-+++. .+|++.+...|. ++++++.+.
T Consensus 69 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l 107 (112)
T 1syr_A 69 SEVTEKENITS--MPTFKVY-KNGSSVDTLLGA-NDSALKQLI 107 (112)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred HHHHHHcCCCc--ccEEEEE-ECCcEEEEEeCC-CHHHHHHHH
Confidence 34566777765 7765444 599999999998 877766544
No 125
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=96.48 E-value=0.026 Score=40.96 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=32.4
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+++.. +|-+++++ +|++.+...|..+.+++....
T Consensus 62 ~~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l 102 (106)
T 3die_A 62 NPSTAAKYEVMS--IPTLIVFK-DGQPVDKVVGFQPKENLAEVL 102 (106)
T ss_dssp CHHHHHHTTCCS--BSEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred CHHHHHhCCCcc--cCEEEEEe-CCeEEEEEeCCCCHHHHHHHH
Confidence 345667777875 88888887 999999999999988876654
No 126
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=96.48 E-value=0.028 Score=43.65 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=33.1
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++.+.+++.. ++-++++|.+|++. ...|..+.++++.+.+
T Consensus 81 ~~~l~~~~~v~~--~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~ 122 (136)
T 2l5l_A 81 EQELAGAFGIRS--IPSILFIPMEGKPE-MAQGAMPKASFKKAID 122 (136)
T ss_dssp CHHHHHHTTCCS--SCEEEEECSSSCCE-EEESCCCHHHHHHHHH
T ss_pred CHHHHHHcCCCC--CCEEEEECCCCcEE-EEeCCCCHHHHHHHHH
Confidence 345677788875 99999999999997 5688888888766554
No 127
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=96.39 E-value=0.031 Score=40.35 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=28.5
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|.+++.+ +|++.+...| .++++++.+.
T Consensus 62 ~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~G-~~~~~l~~~l 100 (104)
T 2vim_A 62 EEAAAKYSVTA--MPTFVFIK-DGKEVDRFSG-ANETKLRETI 100 (104)
T ss_dssp HHHHHHTTCCS--SSEEEEEE-TTEEEEEEES-SCHHHHHHHH
T ss_pred HHHHHHcCCcc--ccEEEEEe-CCcEEEEEeC-CCHHHHHHHH
Confidence 45667778775 88776666 9999999999 5777655443
No 128
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=96.38 E-value=0.026 Score=42.47 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhcC
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLEG 264 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~e 264 (265)
.++.+.+|+.. +|-++ ++.+|++.+...|.. ++++..+ ++.++..
T Consensus 77 ~~~~~~~~v~~--~Pt~~-~~~~G~~~~~~~G~~-~~~l~~~---l~~~l~~ 121 (122)
T 2vlu_A 77 KPIAEQFSVEA--MPTFL-FMKEGDVKDRVVGAI-KEELTAK---VGLHAAA 121 (122)
T ss_dssp HHHHHHTTCCS--SSEEE-EEETTEEEEEEESSC-HHHHHHH---HHHHHSC
T ss_pred HHHHHHcCCCc--ccEEE-EEeCCEEEEEEeCcC-HHHHHHH---HHHHhcc
Confidence 45667777775 77544 447999999999988 6665543 4444443
No 129
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=96.37 E-value=0.03 Score=41.78 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
++.+.+++.. +|-++++ .+|++.+...|..+.+++..+.
T Consensus 62 ~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l 100 (112)
T 2voc_A 62 ETAGKYGVMS--IPTLLVL-KDGEVVETSVGFKPKEALQELV 100 (112)
T ss_dssp SHHHHTTCCS--BSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred HHHHHcCCCc--ccEEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence 3556677775 8899999 7999999999999998876654
No 130
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=96.37 E-value=0.02 Score=45.79 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=54.0
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCC-eeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKN-VHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV 200 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~-vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~ 200 (265)
.|++.||-++ ++||.||... + ...++ +.++.|++++
T Consensus 22 ~~k~vlv~F~---------a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~--------------------------- 65 (149)
T 3gix_A 22 AEKVLVLRFG---------RDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQ--------------------------- 65 (149)
T ss_dssp CSSEEEEEEE---------CTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTT---------------------------
T ss_pred CCCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHccCceEEEEEECCc---------------------------
Confidence 3788888766 9999999731 2 22233 6666666543
Q ss_pred ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEE---------EcccC-CCCHHHHHHHHHH
Q 024610 201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIR---------WQGFG-MATPEELSSLLSC 257 (265)
Q Consensus 201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIR---------WagsG-~at~~E~e~L~k~ 257 (265)
..++.+.++|.- +|.++ ++.+|++. ..-.| ..+.+|+..+.+.
T Consensus 66 -----------~~~l~~~~~v~~--~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~ 118 (149)
T 3gix_A 66 -----------TAVYTQYFDISY--IPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 118 (149)
T ss_dssp -----------CCHHHHHTTCCS--SSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHH
T ss_pred -----------CHHHHHHcCCCc--cCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHH
Confidence 233556667764 88888 67799999 88888 8888877655543
No 131
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=96.36 E-value=0.011 Score=46.19 Aligned_cols=78 Identities=12% Similarity=-0.072 Sum_probs=52.5
Q ss_pred hhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcc
Q 024610 148 DSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKI 221 (265)
Q Consensus 148 ~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi 221 (265)
++||.||.. .+.+.-++.++.|++.+..-. . ..+...++.+.+|+
T Consensus 40 a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~------~-----------------------~~d~~~~l~~~~~v 90 (135)
T 3emx_A 40 SKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE------R-----------------------ELSAARLEMNKAGV 90 (135)
T ss_dssp ETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCH------H-----------------------HHHHHHHHHHHHTC
T ss_pred CCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhh------h-----------------------hhhhhHHHHHHcCC
Confidence 899999873 233322388999988653110 0 01223567788888
Q ss_pred cCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHH
Q 024610 222 LNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSC 257 (265)
Q Consensus 222 ~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~ 257 (265)
.- +| +++++.+|++.+...|+.++++++.+.+-
T Consensus 91 ~~--~P-t~~~~~~G~~v~~~~G~~~~~~~~~~i~~ 123 (135)
T 3emx_A 91 EG--TP-TLVFYKEGRIVDKLVGATPWSLKVEKARE 123 (135)
T ss_dssp CS--SS-EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred ce--eC-eEEEEcCCEEEEEEeCCCCHHHHHHHHHH
Confidence 85 88 55555599999999999998887765543
No 132
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=96.29 E-value=0.022 Score=41.92 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|.++++ .+|++.+...| .+++++..+.
T Consensus 69 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~l 107 (113)
T 1ti3_A 69 KAVAEEWNVEA--MPTFIFL-KDGKLVDKTVG-ADKDGLPTLV 107 (113)
T ss_dssp HHHHHHHHCSS--TTEEEEE-ETTEEEEEEEC-CCTTHHHHHH
T ss_pred HHHHHhCCCCc--ccEEEEE-eCCEEEEEEec-CCHHHHHHHH
Confidence 45666777774 8877776 59999998888 4666655443
No 133
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=96.28 E-value=0.028 Score=41.30 Aligned_cols=36 Identities=14% Similarity=-0.163 Sum_probs=25.4
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
.++.+.+++.. +|-++++ .+|++.+...|. .+++++
T Consensus 64 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~ 99 (107)
T 1gh2_A 64 QGTAATNNISA--TPTFQFF-RNKVRIDQYQGA-DAVGLE 99 (107)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESS-CHHHHH
T ss_pred HHHHHhcCCCc--ccEEEEE-ECCeEEEEEeCC-CHHHHH
Confidence 45667777775 8866666 599999998895 445443
No 134
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=96.27 E-value=0.016 Score=44.92 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccC-CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV 200 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~ 200 (265)
.|++.||-++ ++||.+|.+. + ... .++.++.|+++++
T Consensus 39 ~~k~vlv~F~---------a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~-------------------------- 83 (128)
T 2o8v_B 39 ADGAILVDFW---------AEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQN-------------------------- 83 (128)
T ss_dssp CSSEEEEEEE---------CSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTC--------------------------
T ss_pred cCCEEEEEEE---------CCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCC--------------------------
Confidence 4788888665 8999998731 1 122 2577777776552
Q ss_pred ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+++.. +|-++++ .+|++.+...|..+.+++..+.+
T Consensus 84 ------------~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 124 (128)
T 2o8v_B 84 ------------PGTAPKYGIRG--IPTLLLF-KNGEVAATKVGALSKGQLKEFLD 124 (128)
T ss_dssp ------------CTTSGGGTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred ------------HHHHHHcCCCc--cCEEEEE-eCCEEEEEEcCCCCHHHHHHHHH
Confidence 12334455654 8888888 69999999999988887765543
No 135
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=96.26 E-value=0.034 Score=40.95 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=28.0
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
..++.+.+++.. +|.++ ++.+|++.+...|. +++++..+
T Consensus 67 ~~~~~~~~~v~~--~Pt~~-~~~~G~~~~~~~G~-~~~~l~~~ 105 (112)
T 1ep7_A 67 VAAVAEAAGITA--MPTFH-VYKDGVKADDLVGA-SQDKLKAL 105 (112)
T ss_dssp THHHHHHHTCCB--SSEEE-EEETTEEEEEEESC-CHHHHHHH
T ss_pred hHHHHHHcCCCc--ccEEE-EEECCeEEEEEcCC-CHHHHHHH
Confidence 355667778775 77644 45799999999998 77765544
No 136
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=96.25 E-value=0.029 Score=40.74 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|-+++++ +|++.....|. ++++++.+.
T Consensus 63 ~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l 101 (105)
T 3m9j_A 63 QDVASESEVKS--MPTFQFFK-KGQKVGEFSGA-NKEKLEATI 101 (105)
T ss_dssp HHHHHHTTCCB--SSEEEEEE-TTEEEEEEESS-CHHHHHHHH
T ss_pred HHHHHHcCCCc--CcEEEEEE-CCeEEEEEeCC-CHHHHHHHH
Confidence 45667778875 88888884 89999988898 877776554
No 137
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=96.24 E-value=0.066 Score=38.79 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=34.6
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
+...++.+.+++.. +|.++++ .+|++.+...|..+.+++....+
T Consensus 62 ~~~~~~~~~~~i~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~ 105 (109)
T 3tco_A 62 DENQKIADKYSVLN--IPTTLIF-VNGQLVDSLVGAVDEDTLESTVN 105 (109)
T ss_dssp TTCHHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred ccCHHHHHhcCccc--CCEEEEE-cCCcEEEeeeccCCHHHHHHHHH
Confidence 33456777788875 8988888 69999999999999888766543
No 138
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.027 Score=42.81 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=31.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|.++++|. |++.+...|..+.+++....
T Consensus 73 ~~l~~~~~v~~--~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l 112 (133)
T 1x5d_A 73 QVLASRYGIRG--FPTIKIFQK-GESPVDYDGGRTRSDIVSRA 112 (133)
T ss_dssp CHHHHHHTCCS--SSEEEEEET-TEEEEEECSCCSHHHHHHHH
T ss_pred HHHHHhCCCCe--eCeEEEEeC-CCceEEecCCCCHHHHHHHH
Confidence 45667788875 999999996 99999999998888765543
No 139
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=96.24 E-value=0.064 Score=39.37 Aligned_cols=41 Identities=22% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+++.. +|.++++ .+|++.+...|..+.+++..+.+
T Consensus 69 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~ 109 (115)
T 1thx_A 69 PTTVKKYKVEG--VPALRLV-KGEQILDSTEGVISKDKLLSFLD 109 (115)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHcCCCc--eeEEEEE-cCCEEEEEecCCCCHHHHHHHHH
Confidence 45667778775 8999999 79999999999988887765543
No 140
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=96.22 E-value=0.038 Score=39.57 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|-++++ .+|++.+...|..+.+++..+.
T Consensus 59 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l 98 (104)
T 2e0q_A 59 PDIAARYGVMS--LPTVIFF-KDGEPVDEIIGAVPREEIEIRI 98 (104)
T ss_dssp HHHHHHTTCCS--SCEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred HHHHHhCCccc--cCEEEEE-ECCeEhhhccCCCCHHHHHHHH
Confidence 45667777775 8888888 6999999999998877765443
No 141
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=96.21 E-value=0.062 Score=39.18 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=31.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+|+.. +|-++++ .+|++.+...|..+.+++..+.+
T Consensus 64 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 104 (108)
T 2trx_A 64 PGTAPKYGIRG--IPTLLLF-KNGEVAATKVGALSKGQLKEFLD 104 (108)
T ss_dssp TTHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHcCCcc--cCEEEEE-eCCEEEEEEecCCCHHHHHHHHH
Confidence 34566777775 8888888 69999999999998887765543
No 142
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=96.13 E-value=0.045 Score=45.72 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=67.9
Q ss_pred cccccCCCceeeCCCC--CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH----------Hhhcc
Q 024610 93 LAAVKFPDLDVSYSDR--TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF----------EAFSD 160 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G--~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~----------e~~~~ 160 (265)
......|+|.+.+ +| +++++.+ .++||..|+.++ - ..|+-.|. +.|.+
T Consensus 15 ~vGd~aPdf~l~~-~g~~~~v~L~d-----------~~~gk~vVL~fy-P-------~~fTp~Ct~e~~~f~~~~~ef~~ 74 (171)
T 2xhf_A 15 KVGDIIPDVLVYE-DVPSKSFPIHD-----------VFRGRKGILFSV-V-------GAFVPGSNNHIPEYLSLYDKFKE 74 (171)
T ss_dssp CTTCBCCCCEEEC-SSTTCEEETHH-----------HHTTSEEEEEEC-S-------CTTCTTTTSSHHHHHHTHHHHHH
T ss_pred cCcCCCCCeEEec-CCCCcEEEhHH-----------HhCCCeEEEEEE-C-------CCCCCcCHHHHHHHHHHHHHHHH
Confidence 3455679999874 34 7776542 235786555432 2 33333222 33443
Q ss_pred CCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------ccEEE
Q 024610 161 SKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------TGYIF 230 (265)
Q Consensus 161 ~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------vGYVy 230 (265)
. +++ ++-||.++-.. .+.|. . ..+.. . ...+ .-+...++-+++|+.... .=++|
T Consensus 75 ~-gv~~VigIS~D~~~~-----~~~w~-~--~~~~~-~-----~f~l-LSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tf 138 (171)
T 2xhf_A 75 E-GYHTIACIAVNDPFV-----MAAWG-K--TVDPE-H-----KIRM-LADMHGEFTRALGTELDSSKMLGNNRSRRYAM 138 (171)
T ss_dssp T-TCCEEEEEESSCHHH-----HHHHH-H--HHCTT-C-----CSEE-EECTTSHHHHHHTCBCCCHHHHSSCCBCCEEE
T ss_pred C-CCCEEEEEeCCCHHH-----HHHHH-H--hcCCC-C-----CeEE-EEeCCchHHHHhCCceeccccCCCcceEEEEE
Confidence 3 785 99999988543 22221 1 11121 1 1222 235567899999997543 23899
Q ss_pred EEeCCCcEEEcccCC
Q 024610 231 LLDKFGRIRWQGFGM 245 (265)
Q Consensus 231 LVD~~grIRWagsG~ 245 (265)
||| +|+|||..-..
T Consensus 139 vId-dG~V~~~~v~~ 152 (171)
T 2xhf_A 139 LID-DNKIRSVSTEP 152 (171)
T ss_dssp EEE-TTEEEEEEETT
T ss_pred EEe-CCEEEEEEEeC
Confidence 999 99999998765
No 143
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=96.11 E-value=0.1 Score=37.93 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=31.0
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+|+.. +|-++++ .+|++.+...|..+.++++...
T Consensus 62 ~~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l 102 (107)
T 1dby_A 62 SPNVASEYGIRS--IPTIMVF-KGGKKCETIIGAVPKATIVQTV 102 (107)
T ss_dssp CHHHHHHHTCCS--SCEEEEE-SSSSEEEEEESCCCHHHHHHHH
T ss_pred CHHHHHHCCCCc--CCEEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence 345667788874 7776665 6999999999999988766544
No 144
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=96.10 E-value=0.075 Score=40.05 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=32.3
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+++.. ++.++++ .+|++.+...|..+.+++..+.
T Consensus 74 ~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l 114 (119)
T 1w4v_A 74 HTDLAIEYEVSA--VPTVLAM-KNGDVVDKFVGIKDEDQLEAFL 114 (119)
T ss_dssp THHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred CHHHHHHcCCCc--ccEEEEE-eCCcEEEEEcCCCCHHHHHHHH
Confidence 345777788876 8888888 6999999999998888766544
No 145
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=96.10 E-value=0.062 Score=38.98 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=31.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+|+.. +|.++++ .+|++.+...|..+++++...
T Consensus 61 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~ 99 (105)
T 1nsw_A 61 PETTSQFGIMS--IPTLILF-KGGRPVKQLIGYQPKEQLEAQ 99 (105)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCcc--ccEEEEE-eCCeEEEEEecCCCHHHHHHH
Confidence 45667777775 8999988 699999999999998776543
No 146
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=96.08 E-value=0.039 Score=41.70 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=28.1
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|-+++ +.+|++.+.-.|.. +++++.+.
T Consensus 73 ~~l~~~~~v~~--~Pt~~~-~~~G~~~~~~~G~~-~~~l~~~l 111 (114)
T 2oe3_A 73 PDIAKECEVTA--MPTFVL-GKDGQLIGKIIGAN-PTALEKGI 111 (114)
T ss_dssp HHHHHHTTCCS--BSEEEE-EETTEEEEEEESSC-HHHHHHHH
T ss_pred HHHHHHCCCCc--ccEEEE-EeCCeEEEEEeCCC-HHHHHHHH
Confidence 44667777775 776555 47999999989988 77766543
No 147
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=96.06 E-value=0.024 Score=43.08 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=30.2
Q ss_pred HHHHHHhcccCCcccEEEEEeC---CCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDK---FGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~---~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|.++++|. +|++.+.-.|..++ |++.+.
T Consensus 66 ~~~~~~~~i~~--~Pt~~~~~~~~~~G~~~~~~~G~~~~-~l~~~~ 108 (118)
T 2f51_A 66 GNAADAYGVSS--IPALFFVKKEGNEIKTLDQFVGADVS-RIKADI 108 (118)
T ss_dssp HHHHHHTTCCS--SSEEEEEEEETTEEEEEEEEESCCHH-HHHHHH
T ss_pred HHHHHhcCCCC--CCEEEEEeCCCCcceEEEeecCCCHH-HHHHHH
Confidence 45667788875 899999985 49999999998765 455444
No 148
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=96.04 E-value=0.04 Score=42.54 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.+++.||-++ ++||.+|... + ...+++.++.|++++
T Consensus 36 ~~k~vvv~F~---------a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~---------------------------- 78 (125)
T 1r26_A 36 EDILTVAWFT---------AVWCGPCKTIERPMEKIAYEFPTVKFAKVDADN---------------------------- 78 (125)
T ss_dssp SSSCEEEEEE---------CTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTT----------------------------
T ss_pred cCCEEEEEEE---------CCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCC----------------------------
Confidence 4788888666 8999998742 1 222445555555433
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhh
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLL 262 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll 262 (265)
..++.+.+++.. +|.++++ .+|++.+...| +++++++ +.++.++
T Consensus 79 ----------~~~l~~~~~v~~--~Pt~~i~-~~G~~~~~~~G-~~~~~l~---~~l~~~l 122 (125)
T 1r26_A 79 ----------NSEIVSKCRVLQ--LPTFIIA-RSGKMLGHVIG-ANPGMLR---QKLRDII 122 (125)
T ss_dssp ----------CHHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-SCHHHHH---HHHHHHH
T ss_pred ----------CHHHHHHcCCCc--ccEEEEE-eCCeEEEEEeC-CCHHHHH---HHHHHHh
Confidence 344667777775 7765555 69999988888 5766544 4444444
No 149
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.043 Score=40.54 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
.++.+.+|+.. +|.++++ .+|++.+...|. .++|++
T Consensus 66 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~-~~~~l~ 101 (112)
T 3d6i_A 66 SEISELFEISA--VPYFIII-HKGTILKELSGA-DPKEYV 101 (112)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEECSC-CHHHHH
T ss_pred HHHHHHcCCCc--ccEEEEE-ECCEEEEEecCC-CHHHHH
Confidence 45667778875 7877777 499999999998 444443
No 150
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=95.87 E-value=0.081 Score=38.20 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+++.. +|.+++. .+|++.+...| .+++++..+
T Consensus 64 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~ 101 (106)
T 1xwb_A 64 EDIAMEYNISS--MPTFVFL-KNGVKVEEFAG-ANAKRLEDV 101 (106)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-CCHHHHHHH
T ss_pred HHHHHHcCCCc--ccEEEEE-cCCcEEEEEcC-CCHHHHHHH
Confidence 44666777775 7765544 69999999999 677665443
No 151
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=95.83 E-value=0.054 Score=41.09 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.9
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++.+.+++.. +|.+++++ +|++.+.-.|. ++++++.+.+
T Consensus 77 ~~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~l~ 117 (121)
T 2j23_A 77 QSQIAQEVGIRA--MPTFVFFK-NGQKIDTVVGA-DPSKLQAAIT 117 (121)
T ss_dssp CHHHHHHHTCCS--SSEEEEEE-TTEEEEEEESS-CHHHHHHHHH
T ss_pred CHHHHHHcCCCc--ccEEEEEE-CCeEEeeEcCC-CHHHHHHHHH
Confidence 356777888875 88777775 99999988898 7777665443
No 152
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=95.80 E-value=0.069 Score=39.48 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=28.1
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+++.. +|.++++ .+|++.....|. +++++..+.
T Consensus 70 ~~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l 109 (118)
T 2vm1_A 70 LKDVAEAYNVEA--MPTFLFI-KDGEKVDSVVGG-RKDDIHTKI 109 (118)
T ss_dssp SHHHHHHTTCCS--BSEEEEE-ETTEEEEEEESC-CHHHHHHHH
T ss_pred CHHHHHHcCCCc--CcEEEEE-eCCeEEEEecCC-CHHHHHHHH
Confidence 355667777775 7876666 599999988884 666655443
No 153
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=95.79 E-value=0.1 Score=40.72 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=32.2
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++.+.+++.. ++-+++++ +|++.....|..+.+++..+.+
T Consensus 98 ~~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~ 139 (148)
T 3p2a_A 98 EPALSTRFRIRS--IPTIMLYR-NGKMIDMLNGAVPKAPFDNWLD 139 (148)
T ss_dssp CHHHHHHTTCCS--SSEEEEEE-TTEEEEEESSCCCHHHHHHHHH
T ss_pred CHHHHHHCCCCc--cCEEEEEE-CCeEEEEEeCCCCHHHHHHHHH
Confidence 345667777775 78777775 9999999999999888776544
No 154
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=95.74 E-value=0.11 Score=37.78 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=31.9
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+++.. +|-++++ .+|++.+...|..+.+++..+.+
T Consensus 68 ~~l~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~ 108 (111)
T 3uvt_A 68 RNICSKYSVRG--YPTLLLF-RGGKKVSEHSGGRDLDSLHRFVL 108 (111)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEECSCCSHHHHHHHHH
T ss_pred HhHHHhcCCCc--ccEEEEE-eCCcEEEeccCCcCHHHHHHHHH
Confidence 45667778875 7876666 59999999999999998876654
No 155
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=95.72 E-value=0.12 Score=38.00 Aligned_cols=41 Identities=7% Similarity=0.000 Sum_probs=30.4
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.+|+.. +|-++++ .+|++.+...|..+.+++....
T Consensus 66 ~~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l 106 (112)
T 1t00_A 66 NPGTAAKYGVMS--IPTLNVY-QGGEVAKTIVGAKPKAAIVRDL 106 (112)
T ss_dssp CHHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHT
T ss_pred CHHHHHhCCCCc--ccEEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence 345667778875 7765555 6999999999999888766543
No 156
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=95.65 E-value=0.15 Score=36.72 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=32.1
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++.+.+++.. +|.++++ .+|++.+...|..+++++..+.+
T Consensus 61 ~~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~ 102 (105)
T 1fb6_A 61 APGIATQYNIRS--IPTVLFF-KNGERKESIIGAVPKSTLTDSIE 102 (105)
T ss_dssp CHHHHHHTTCCS--SSEEEEE-ETTEEEEEEEECCCHHHHHHHHH
T ss_pred hHHHHHhCCCCc--ccEEEEE-eCCeEEEEEecCCCHHHHHHHHH
Confidence 345667788875 8876666 59999999999999888765543
No 157
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=95.63 E-value=0.097 Score=39.04 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=27.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+|+.. +|.++++ .+|++.+...| .++++++.+
T Consensus 75 ~~~~~~~~v~~--~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~ 112 (117)
T 2xc2_A 75 EETARKYNISA--MPTFIAI-KNGEKVGDVVG-ASIAKVEDM 112 (117)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEES-SCHHHHHHH
T ss_pred HHHHHHcCCCc--cceEEEE-eCCcEEEEEeC-CCHHHHHHH
Confidence 45667777775 7765555 69999999889 577665544
No 158
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=95.63 E-value=0.049 Score=40.88 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=32.9
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+|+.. +|-+++++ +|++.....|..+.+++..+
T Consensus 77 ~~~~~~~~i~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~ 115 (118)
T 1zma_A 77 QAFRSRYGIPT--VPGFVHIT-DGQINVRCDSSMSAQEIKDF 115 (118)
T ss_dssp HHHHHHHTCCS--SCEEEEEE-TTEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHcCCCC--CCeEEEEE-CCEEEEEecCCCCHHHHHHH
Confidence 46778899986 89888886 99999999999999887654
No 159
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=95.61 E-value=0.023 Score=47.67 Aligned_cols=106 Identities=10% Similarity=0.027 Sum_probs=68.0
Q ss_pred cccccccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHhh-------ccC
Q 024610 89 IIPALAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEAF-------SDS 161 (265)
Q Consensus 89 l~ka~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~~-------~~~ 161 (265)
++...-+.+-|+..+.++++.++..- +..|++.||-++ ++||.+|.... ...
T Consensus 85 ~~~~~fg~~~~~~~v~~l~~~~f~~~------------~~~~~~vlv~F~---------a~wC~~C~~~~p~~~~l~~~~ 143 (210)
T 3apq_A 85 YYRYDFGIYDDDPEIITLERREFDAA------------VNSGELWFVNFY---------SPGCSHCHDLAPTWREFAKEV 143 (210)
T ss_dssp HHHHSSSTTTTCTTSEECCHHHHHHH------------HHHSCCEEEEEE---------CTTCHHHHHHHHHHHHHHHHT
T ss_pred cccccccccCCCCceEEecHHHHHHH------------HccCCcEEEEEe---------CCCChhHHHHHHHHHHHHHHh
Confidence 34444456666666667777665422 124788888666 89999997421 111
Q ss_pred -CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEE
Q 024610 162 -KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRW 240 (265)
Q Consensus 162 -~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRW 240 (265)
+.+.++.|++.+ ..++-+.+++.. +|-++++ .+|++.+
T Consensus 144 ~~~v~~~~vd~~~--------------------------------------~~~l~~~~~v~~--~Pt~~~~-~~G~~~~ 182 (210)
T 3apq_A 144 DGLLRIGAVNCGD--------------------------------------DRMLCRMKGVNS--YPSLFIF-RSGMAAV 182 (210)
T ss_dssp BTTBEEEEEETTT--------------------------------------CHHHHHHTTCCS--SSEEEEE-CTTSCCE
T ss_pred cCceEEEEEECCc--------------------------------------cHHHHHHcCCCc--CCeEEEE-ECCCcee
Confidence 124444444333 345666777775 8888888 7999999
Q ss_pred cccCCCCHHHHHHHHH
Q 024610 241 QGFGMATPEELSSLLS 256 (265)
Q Consensus 241 agsG~at~~E~e~L~k 256 (265)
...|..+.+++....+
T Consensus 183 ~~~G~~~~~~l~~~i~ 198 (210)
T 3apq_A 183 KYNGDRSKESLVAFAM 198 (210)
T ss_dssp ECCSCCCHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHH
Confidence 9999988887665543
No 160
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=95.52 E-value=0.07 Score=44.82 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=64.5
Q ss_pred cccCCCceeeC--C---------CC----CeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhH---H
Q 024610 95 AVKFPDLDVSY--S---------DR----TTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFF---E 156 (265)
Q Consensus 95 AlyFPnl~~~~--l---------~G----~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~---e 156 (265)
...+|+|.+.+ - +| +++++. +.++||..|+.++=.++---|+.+=...|. +
T Consensus 4 Gd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~-----------d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~ 72 (182)
T 1xiy_A 4 NDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTH-----------ELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYD 72 (182)
T ss_dssp TCBCCCCEEEEEHHHHTC--------CCEEEEEHH-----------HHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHH
T ss_pred CCCCCCeEEEcccccccccccccCCCccceeEeHH-----------HHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 34679998876 2 56 566543 234688755543321222222211111122 2
Q ss_pred hhccCCCee-EEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc---------c
Q 024610 157 AFSDSKNVH-LYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL---------T 226 (265)
Q Consensus 157 ~~~~~~~vq-iv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~---------v 226 (265)
.|....+++ ++-||.++-.. .+.| .+...-+ ...+ ..+....+-+++|+.-.. .
T Consensus 73 ~f~~~~g~~~V~gvS~D~~~~-----~~~~-----~~~~~~~-----~f~l-LsD~~~~~a~~yGv~~~~~~~G~g~~~~ 136 (182)
T 1xiy_A 73 YFIKENNFDDIYCITNNDIYV-----LKSW-----FKSMDIK-----KIKY-ISDGNSSFTDSMNMLVDKSNFFMGMRPW 136 (182)
T ss_dssp HHHTTSCCSEEEEEESSCHHH-----HHHH-----HHHTTCC-----SSEE-EECTTSHHHHHTTCEEECGGGTCCEEEC
T ss_pred HHHHhCCCcEEEEEeCCCHHH-----HHHH-----HHHcCCC-----CceE-EEeCchHHHHHhCCceeccccCCCCceE
Confidence 341235785 99999987432 1222 2212211 1222 235567889999985221 3
Q ss_pred cEEEEEeCCCcEEEcccCC
Q 024610 227 GYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG~ 245 (265)
-++|||| +|+|||..-..
T Consensus 137 R~tfvId-dG~V~~~~v~~ 154 (182)
T 1xiy_A 137 RFVAIVE-NNILVKMFQEK 154 (182)
T ss_dssp CEEEEEE-TTEEEEEEECS
T ss_pred EEEEEEc-CCEEEEEEEeC
Confidence 3899999 99999987543
No 161
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=95.52 E-value=0.18 Score=36.34 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|.++++ .+|++.+...|..+.+++....
T Consensus 62 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l 101 (109)
T 2yzu_A 62 PKTAMRYRVMS--IPTVILF-KDGQPVEVLVGAQPKRNYQAKI 101 (109)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred HhHHHhCCCCc--CCEEEEE-eCCcEeeeEeCCCCHHHHHHHH
Confidence 45667777775 8888888 6999999999998887765543
No 162
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=95.41 E-value=0.007 Score=49.51 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=32.2
Q ss_pred CcccEEEEEeCCCcEEEcccCC-------CCHHHHHHHHHHHHhhhc
Q 024610 224 LLTGYIFLLDKFGRIRWQGFGM-------ATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 224 ~~vGYVyLVD~~grIRWagsG~-------at~~E~e~L~k~~~~Ll~ 263 (265)
..+|-++++|++|++++.-.|+ -++++.+.+...++..++
T Consensus 99 ~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~ 145 (151)
T 3ph9_A 99 QYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALR 145 (151)
T ss_dssp CCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHH
Confidence 3589999999999999999998 667777777776666554
No 163
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=95.36 E-value=0.012 Score=47.95 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=21.1
Q ss_pred cccCCcccEEEEEeCCCcEEEcccCC
Q 024610 220 KILNLLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 220 gi~N~~vGYVyLVD~~grIRWagsG~ 245 (265)
++....+|.++++|.+|++.+.-.|.
T Consensus 98 ~~~~~~~Pt~~~~d~~G~~~~~~~G~ 123 (164)
T 1sen_A 98 SPDGGYIPRILFLDPSGKVHPEIINE 123 (164)
T ss_dssp CTTCSCSSEEEEECTTSCBCTTCCCT
T ss_pred cccCCcCCeEEEECCCCCEEEEEeCC
Confidence 34334589999999999999988884
No 164
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.36 E-value=0.048 Score=47.50 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++-+.+||.. +|-++++. +|++.+.-.|..+.+++....
T Consensus 70 ~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l 109 (287)
T 3qou_A 70 QMIAAQFGLRA--IPTVYLFQ-NGQPVDGFQGPQPEEAIRALL 109 (287)
T ss_dssp HHHHHTTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHcCCCC--CCeEEEEE-CCEEEEEeeCCCCHHHHHHHH
Confidence 45566677764 88787774 999999999998887765443
No 165
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=95.17 E-value=0.24 Score=36.65 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=30.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+++.. +|-+++++ +|++.+...|..+.+++..+
T Consensus 74 ~~~~~~~~i~~--~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~ 112 (121)
T 2i1u_A 74 PETARNFQVVS--IPTLILFK-DGQPVKRIVGAKGKAALLRE 112 (121)
T ss_dssp HHHHHHTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHH
T ss_pred HHHHHhcCCCc--CCEEEEEE-CCEEEEEecCCCCHHHHHHH
Confidence 45667778875 88877776 99999999999988876554
No 166
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=95.15 E-value=0.048 Score=45.04 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=27.0
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDS 174 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~ 174 (265)
+|++.||.++ ++||.||.. .+ ...+++.++-|+++++
T Consensus 53 ~~k~vvv~F~---------A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~ 96 (167)
T 1z6n_A 53 ERRYRLLVAG---------EMWCPDCQINLAALDFAQRLQPNIELAIISKGRA 96 (167)
T ss_dssp CSCEEEEEEC---------CTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHH
T ss_pred CCCEEEEEEE---------CCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCC
Confidence 5788888655 999999973 22 3456788888887764
No 167
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=95.13 E-value=0.11 Score=39.40 Aligned_cols=41 Identities=5% Similarity=0.034 Sum_probs=27.8
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEE-EcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIR-WQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIR-WagsG~at~~E~e~L~ 255 (265)
.++-+.++|.. +|-+++++..+++. +.-.|..+.+++....
T Consensus 82 ~~l~~~~~v~~--~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i 123 (127)
T 3h79_A 82 PDVIERMRVSG--FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123 (127)
T ss_dssp HHHHHHTTCCS--SSEEEEECSSCSSSCEECCSCCCHHHHHHHH
T ss_pred HhHHHhcCCcc--CCEEEEEeCCCCCCceEecCCccHHHHHHHH
Confidence 45667777775 88888998777642 4445777777766544
No 168
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=95.12 E-value=0.25 Score=35.91 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=32.9
Q ss_pred ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
...++.+.+++.. +|-+++++ +|++.+...|..+.+++..+.+
T Consensus 64 ~~~~l~~~~~v~~--~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~ 106 (111)
T 3gnj_A 64 EEKTLFQRFSLKG--VPQILYFK-DGEYKGKMAGDVEDDEVEQMIA 106 (111)
T ss_dssp TCHHHHHHTTCCS--SCEEEEEE-TTEEEEEEESSCCHHHHHHHHH
T ss_pred cChhHHHhcCCCc--CCEEEEEE-CCEEEEEEeccCCHHHHHHHHH
Confidence 3455677788875 88888885 9999999999988887766543
No 169
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.10 E-value=0.2 Score=37.87 Aligned_cols=41 Identities=12% Similarity=-0.020 Sum_probs=31.9
Q ss_pred ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSS 253 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~ 253 (265)
...++.+.+++.. +|.++++|..|++.+.-.|..+.+++..
T Consensus 77 ~~~~l~~~~~v~~--~Pt~~~~~~~~~~~~~~~G~~~~~~l~~ 117 (130)
T 2dml_A 77 KHQSLGGQYGVQG--FPTIKIFGANKNKPEDYQGGRTGEAIVD 117 (130)
T ss_dssp TCHHHHHHHTCCS--SSEEEEESSCTTSCEECCSCCSHHHHHH
T ss_pred CCHHHHHHcCCCc--cCEEEEEeCCCCeEEEeecCCCHHHHHH
Confidence 3456777888875 9999999988887777788888776543
No 170
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=93.59 E-value=0.0062 Score=46.63 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=31.2
Q ss_pred HHHHHHhcccCCcccEEEEEeC-CCcE--EEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDK-FGRI--RWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~-~grI--RWagsG~at~~E~e~L 254 (265)
.++.+.+++.. +|.++++|+ +|++ .....|..+++++..+
T Consensus 68 ~~~~~~~~v~~--~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~ 110 (130)
T 2lst_A 68 QELARRYRVPG--TPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKE 110 (130)
Confidence 45667778875 999999995 6999 8888898877766544
No 171
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=94.39 E-value=0.35 Score=37.49 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=31.5
Q ss_pred ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
...++.+.+++.. +|-++++ .+|++.+.-.|..+.+++....+
T Consensus 66 ~~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 108 (140)
T 3hz4_A 66 TNPWTAEKYGVQG--TPTFKFF-CHGRPVWEQVGQIYPSILKNAVR 108 (140)
T ss_dssp TCHHHHHHHTCCE--ESEEEEE-ETTEEEEEEESSCCHHHHHHHHH
T ss_pred cCHhHHHHCCCCc--CCEEEEE-eCCcEEEEEcCCCCHHHHHHHHH
Confidence 3455677788875 8855555 69999999999988887665443
No 172
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=94.15 E-value=0.47 Score=37.82 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++-+.++|.. +|.+++++ +|++.....|..+.++++.+.+
T Consensus 108 ~~l~~~~~i~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~ 148 (155)
T 2ppt_A 108 PAVAGRHRIQG--IPAFILFH-KGRELARAAGARPASELVGFVR 148 (155)
T ss_dssp THHHHHTTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHHcCCCc--CCEEEEEe-CCeEEEEecCCCCHHHHHHHHH
Confidence 34667778775 88888884 9999999999888877665543
No 173
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.14 E-value=0.33 Score=37.02 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.9
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++.+.++|.. ++.+++++ +|+ ...-.|..+.+++..+.
T Consensus 80 ~~~~~~~~~v~~--~Pt~~~~~-~G~-~~~~~g~~~~~~l~~~l 119 (140)
T 2dj1_A 80 ASMLASKFDVSG--YPTIKILK-KGQ-AVDYDGSRTQEEIVAKV 119 (140)
T ss_dssp CHHHHHHTTCCS--SSEEEEEE-TTE-EEECCSCCCHHHHHHHH
T ss_pred cHHHHHHCCCCc--cCeEEEEE-CCc-EEEcCCCCCHHHHHHHH
Confidence 356778888875 89999884 788 56777888887765544
No 174
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=93.94 E-value=0.23 Score=48.29 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=65.3
Q ss_pred cccccCCCceeeCCCCCeeeccCCCCCCccCccccCCCceEEEEEeeeccchHHHhhhcchhHHh----------hcc-C
Q 024610 93 LAAVKFPDLDVSYSDRTTLKLPVCSSGDVANADKAAIPKVSLVCLTFRASSQAMVDSWSSPFFEA----------FSD-S 161 (265)
Q Consensus 93 ~~AlyFPnl~~~~l~G~tl~~p~~~~~~~~~t~~~l~gKvSIV~l~~~~~gq~~~~sw~~p~~e~----------~~~-~ 161 (265)
..++|=|+-.+..++++++..-. .-.|++.||-++ ++||.||... +.+ .
T Consensus 4 ~~~Ly~~~~~V~~Lt~~~f~~~v-----------~~~~k~vlV~Fy---------A~WC~pCk~~~P~l~~la~~~~~~~ 63 (519)
T 3t58_A 4 MSVLYSSSDPLTLLDADSVRPTV-----------LGSSSAWAVEFF---------ASWCGHAIAFAPTWKELANDVKDWR 63 (519)
T ss_dssp -CCSCCTTSSSEEECTTTHHHHH-----------SSCSSEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHGGGT
T ss_pred ccccCCCCCCcEECChHHHHHHH-----------HhCCCeEEEEEE---------CCCCHHHHHHHHHHHHHHHHhhCcC
Confidence 34556666556666666654211 013588888666 8999998731 222 2
Q ss_pred CCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeC---CCcE
Q 024610 162 KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDK---FGRI 238 (265)
Q Consensus 162 ~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~---~grI 238 (265)
+.+.++.|++.+. ...++-+.+||.- ++-++++|. +|++
T Consensus 64 ~~v~~~~VD~d~d------------------------------------~~~~l~~~~~V~~--~PTl~~f~~g~~~G~~ 105 (519)
T 3t58_A 64 PALNLAVLDCAEE------------------------------------TNSAVCREFNIAG--FPTVRFFQAFTKNGSG 105 (519)
T ss_dssp TTEEEEEEETTSG------------------------------------GGHHHHHHTTCCS--BSEEEEECTTCCSCCC
T ss_pred CcEEEEEEECCcc------------------------------------ccHHHHHHcCCcc--cCEEEEEcCcccCCCc
Confidence 3466666665321 1245667778875 899999997 7887
Q ss_pred EEcccCCCCHHHHHHH
Q 024610 239 RWQGFGMATPEELSSL 254 (265)
Q Consensus 239 RWagsG~at~~E~e~L 254 (265)
.....|..+.+++...
T Consensus 106 ~~~~~g~~~~~~L~~~ 121 (519)
T 3t58_A 106 ATLPGAGANVQTLRMR 121 (519)
T ss_dssp EEECCSSCCHHHHHHH
T ss_pred eeEecCCCCHHHHHHH
Confidence 7777787777766543
No 175
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=93.80 E-value=0.38 Score=40.55 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHHh------h-ccCC-CeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFEA------F-SDSK-NVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENV 200 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e~------~-~~~~-~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~ 200 (265)
.+|+.||-++ ++||.+|... + ...+ .+.++.|+++++
T Consensus 29 ~~k~vvv~F~---------a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------------------------- 73 (222)
T 3dxb_A 29 ADGAILVDFW---------AEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-------------------------- 73 (222)
T ss_dssp CSSCEEEEEE---------CTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTC--------------------------
T ss_pred cCCEEEEEEE---------CCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCC--------------------------
Confidence 4788888666 8999998732 1 1222 367777776542
Q ss_pred ccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 201 LQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 201 l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+++.- +|.+++++ +|++.+.-.|..+.+++..+.+
T Consensus 74 ------------~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l~ 114 (222)
T 3dxb_A 74 ------------PGTAPKYGIRG--IPTLLLFK-NGEVAATKVGALSKGQLKEFLD 114 (222)
T ss_dssp ------------TTTGGGGTCCS--BSEEEEEE-TTEEEEEEESCCCHHHHHHHHH
T ss_pred ------------HHHHHHcCCCc--CCEEEEEE-CCeEEEEeccccChHHHHHHHH
Confidence 22234456654 77777776 8999999999999888776654
No 176
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=93.72 E-value=0.12 Score=38.40 Aligned_cols=34 Identities=21% Similarity=0.040 Sum_probs=25.2
Q ss_pred cccCCcccEEEEEeCCCcE-EEcccCCCCHHHHHHHH
Q 024610 220 KILNLLTGYIFLLDKFGRI-RWQGFGMATPEELSSLL 255 (265)
Q Consensus 220 gi~N~~vGYVyLVD~~grI-RWagsG~at~~E~e~L~ 255 (265)
++.. +|-++++|..|++ .....|..+.+++....
T Consensus 78 ~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i 112 (121)
T 2djj_A 78 EIQG--FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112 (121)
T ss_dssp CCSS--SSEEEEECSSCTTSCCCCCCCSCHHHHHHHH
T ss_pred ccCc--CCeEEEEeCcCCCCceEecCCCCHHHHHHHH
Confidence 5554 8999999988785 67777888877766544
No 177
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.58 E-value=0.14 Score=39.92 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=51.4
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCcccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQ 202 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~ 202 (265)
|++.||-++ ++||.||.. .+ ...+++.++.|++.+..
T Consensus 30 ~~~vvv~f~---------a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~--------------------------- 73 (135)
T 2dbc_A 30 DLWVVIHLY---------RSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI--------------------------- 73 (135)
T ss_dssp SCEEEEEEC---------CTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---------------------------
T ss_pred CCEEEEEEE---------CCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---------------------------
Confidence 577777655 999999873 11 23456777777765520
Q ss_pred ceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC-------CHHHHHHHHHHHH
Q 024610 203 RQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA-------TPEELSSLLSCTS 259 (265)
Q Consensus 203 ~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a-------t~~E~e~L~k~~~ 259 (265)
+.++|.. +|-+++++ +|++...-.|.. +.++++.+..-..
T Consensus 74 --------------~~~~i~~--~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 74 --------------EHYHDNC--LPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp --------------SSCCSSC--CSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred --------------ccCCCCC--CCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 2344544 77777776 999988888875 6777777666543
No 178
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=93.06 E-value=0.16 Score=38.82 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=32.3
Q ss_pred ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
...++.+.+|+.. +|.++++ .+|++...-.|..+++++....
T Consensus 77 ~~~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l 118 (123)
T 1oaz_A 77 QNPGTAPKYGIRG--IPTLLLF-KNGEVAATKVGALSKGQLKEFL 118 (123)
T ss_dssp SCTTTGGGGTCCB--SSEEEEE-ESSSEEEEEESCCCHHHHHHHH
T ss_pred CCHHHHHHcCCCc--cCEEEEE-ECCEEEEEEeCCCCHHHHHHHH
Confidence 3345667778875 8999988 7999999999998887765543
No 179
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=92.98 E-value=0.82 Score=33.88 Aligned_cols=42 Identities=7% Similarity=-0.134 Sum_probs=28.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcE-EEccc--CCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRI-RWQGF--GMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grI-RWags--G~at~~E~e~L~k 256 (265)
.++.+.+++.. +|.++++|..|++ |+.|. |..+++++..+.+
T Consensus 65 ~~~~~~~~v~~--~Pt~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~ 109 (122)
T 3aps_A 65 PQTCQKAGIKA--YPSVKLYQYERAKKSIWEEQINSRDAKTIAALIY 109 (122)
T ss_dssp HHHHHHTTCCS--SSEEEEEEEEGGGTEEEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHcCCCc--cceEEEEeCCCccceeeccccCcCCHHHHHHHHH
Confidence 45667788875 8999999876663 44444 4467777665443
No 180
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=92.92 E-value=0.32 Score=38.05 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=51.3
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQR 203 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~ 203 (265)
+++.|| +|. ++||.||.. .+.+.+++.+|.|.+++++- +
T Consensus 24 ~~~vvi--~kh-------atwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~-----~--------------------- 68 (112)
T 3iv4_A 24 NKYVFV--LKH-------SETCPISANAYDQFNKFLYERDMDGYYLIVQQERD-----L--------------------- 68 (112)
T ss_dssp CSEEEE--EEE-------CTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHH-----H---------------------
T ss_pred CCCEEE--EEE-------CCcCHhHHHHHHHHHHHhccCCceEEEEEeecCch-----h---------------------
Confidence 567777 443 999999873 33323567777777766321 1
Q ss_pred eeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccC-CCCHHHHH
Q 024610 204 QIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFG-MATPEELS 252 (265)
Q Consensus 204 ~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG-~at~~E~e 252 (265)
..++-+.+||.. -+|-++|+. +|++.|.+|- .-+.++++
T Consensus 69 --------Sn~IA~~~~V~h-~sPq~il~k-~G~~v~~~SH~~I~~~~l~ 108 (112)
T 3iv4_A 69 --------SDYIAKKTNVKH-ESPQAFYFV-NGEMVWNRDHGDINVSSLA 108 (112)
T ss_dssp --------HHHHHHHHTCCC-CSSEEEEEE-TTEEEEEEEGGGCSHHHHH
T ss_pred --------hHHHHHHhCCcc-CCCeEEEEE-CCEEEEEeeccccCHHHHH
Confidence 144778888873 278888886 9999999654 45555443
No 181
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.88 E-value=0.11 Score=39.41 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=46.7
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCC
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGE 198 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~ 198 (265)
.+++.||-++ ++||.+|.+ .+...+++.++.|+..++.
T Consensus 24 ~~~~vlv~f~---------a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~----------------------- 71 (133)
T 2dj3_A 24 PKKDVLIEFY---------APWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND----------------------- 71 (133)
T ss_dssp TTSEEEEEEC---------CTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC-----------------------
T ss_pred CCCcEEEEEE---------CCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH-----------------------
Confidence 3788888655 899999873 1222245777777765421
Q ss_pred ccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcE---EEcccCCCCHHHHHHHH
Q 024610 199 NVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI---RWQGFGMATPEELSSLL 255 (265)
Q Consensus 199 ~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grI---RWagsG~at~~E~e~L~ 255 (265)
.+.+.+++.. +|.++++|..+++ ++.| |..+.+++....
T Consensus 72 ---------------~~~~~~~v~~--~Pt~~~~~~g~~~~~~~~~g-g~~~~~~l~~~l 113 (133)
T 2dj3_A 72 ---------------ITNDQYKVEG--FPTIYFAPSGDKKNPIKFEG-GNRDLEHLSKFI 113 (133)
T ss_dssp ---------------CCCSSCCCSS--SSEEEEECTTCTTSCEECCS-SCCSTTHHHHHH
T ss_pred ---------------HHHhhcCCCc--CCEEEEEeCCCcccceEecC-CCcCHHHHHHHH
Confidence 1122345554 8999999977654 4443 556666655443
No 182
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=92.78 E-value=0.21 Score=36.59 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=28.1
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEE--EcccCCCCHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIR--WQGFGMATPEELSSLL 255 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIR--WagsG~at~~E~e~L~ 255 (265)
++.+.+++.. +|.++++. +|++. +...|..+.+++..+.
T Consensus 72 ~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~l 112 (120)
T 1mek_A 72 DLAQQYGVRG--YPTIKFFR-NGDTASPKEYTAGREADDIVNWL 112 (120)
T ss_dssp SSHHHHTCCS--SSEEEEEE-SSCSSSCEECCCCSSHHHHHHHH
T ss_pred HHHHHCCCCc--ccEEEEEe-CCCcCCcccccCccCHHHHHHHH
Confidence 4556778775 89899885 88865 7777887877765443
No 183
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=92.77 E-value=0.39 Score=39.98 Aligned_cols=24 Identities=4% Similarity=-0.237 Sum_probs=19.6
Q ss_pred cccCCcccEEEEEeCCCcEEEcccCC
Q 024610 220 KILNLLTGYIFLLDKFGRIRWQGFGM 245 (265)
Q Consensus 220 gi~N~~vGYVyLVD~~grIRWagsG~ 245 (265)
|+. -+|.++++|++|++.+.+...
T Consensus 101 gv~--g~Pt~v~l~~dG~~v~~~ty~ 124 (173)
T 3ira_A 101 GRG--GWPLNIIMTPGKKPFFAGTYI 124 (173)
T ss_dssp SCC--CSSEEEEECTTSCEEEEESSC
T ss_pred CCC--CCcceeeECCCCCceeeeeeC
Confidence 665 499999999999999986433
No 184
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=92.12 E-value=0.78 Score=34.65 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=52.6
Q ss_pred CceEEEEEeeeccchHHHhh-------hcchhHH------h-hccC-CCeeEEEEecccchhhccccchHHHHHHHHhcC
Q 024610 130 PKVSLVCLTFRASSQAMVDS-------WSSPFFE------A-FSDS-KNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSK 194 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~s-------w~~p~~e------~-~~~~-~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~ 194 (265)
|++.||-++ ++ ||.||.. . .... .++.++.|++.+.-. +
T Consensus 24 ~~~v~v~F~---------a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~--------~--------- 77 (123)
T 1wou_A 24 GKTIFAYFT---------GSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPY--------W--------- 77 (123)
T ss_dssp TSEEEEEEE---------CCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHH--------H---------
T ss_pred CCEEEEEEE---------ccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchh--------h---------
Confidence 788888655 66 9999873 2 2333 378999999865210 0
Q ss_pred CCCCccccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 195 DAGENVLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 195 p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.+....+.+.+++.. +|-+++++..+++ .|...+++++++.+.
T Consensus 78 --------------~d~~~~~~~~~~i~~--~Pt~~~~~~~~~~--~g~~~~~~~~l~~~i 120 (123)
T 1wou_A 78 --------------KDPNNDFRKNLKVTA--VPTLLKYGTPQKL--VESECLQANLVEMLF 120 (123)
T ss_dssp --------------HCTTCHHHHHHCCCS--SSEEEETTSSCEE--EGGGGGCHHHHHHHH
T ss_pred --------------hchhHHHHHHCCCCe--eCEEEEEcCCceE--eccccCCHHHHHHHH
Confidence 122345778899886 9999999874444 344446677665543
No 185
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.03 E-value=1 Score=33.74 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=30.8
Q ss_pred ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
+..++.+.+++.. +|.++++ .+|++ ..-.|..+.+++..+.+
T Consensus 65 ~~~~~~~~~~v~~--~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~ 106 (126)
T 1x5e_A 65 EQPGLSGRFIINA--LPTIYHC-KDGEF-RRYQGPRTKKDFINFIS 106 (126)
T ss_dssp TCHHHHHHTTCCS--SSEEEEE-ETTEE-EECCSCCCHHHHHHHHH
T ss_pred CCHHHHHHcCCcc--cCEEEEE-eCCeE-EEeecCCCHHHHHHHHH
Confidence 3455777788875 8888888 58997 67788888877665543
No 186
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=91.96 E-value=1.9 Score=32.91 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=30.4
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+++.. +|-++++ .+|++.+...|..+.+++....
T Consensus 94 ~~l~~~~~v~~--~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i 133 (140)
T 1v98_A 94 PGLAARYGVRS--VPTLVLF-RRGAPVATWVGASPRRVLEERL 133 (140)
T ss_dssp HHHHHHTTCCS--SSEEEEE-ETTEEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHCCCCc--cCEEEEE-eCCcEEEEEeCCCCHHHHHHHH
Confidence 34666777875 8888877 4999999999998877765544
No 187
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=91.56 E-value=0.045 Score=41.36 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=26.3
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
..++.+.+++.. +|.++++ .+|++.+...|. +++++..+
T Consensus 78 ~~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~ 116 (130)
T 1wmj_A 78 LKEVAEKYNVEA--MPTFLFI-KDGAEADKVVGA-RKDDLQNT 116 (130)
T ss_dssp SGGGHHHHTCCS--SCCCCBC-TTTTCCBCCCTT-CTTTHHHH
T ss_pred hHHHHHHcCCCc--cceEEEE-eCCeEEEEEeCC-CHHHHHHH
Confidence 345667778775 7755444 799999888884 55555443
No 188
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=90.53 E-value=1.6 Score=36.95 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCC-----CcEEEcccCCCCHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKF-----GRIRWQGFGMATPEELSS 253 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~-----grIRWagsG~at~~E~e~ 253 (265)
.++-+.++|.- ++-+++++.. |++. ...| ++++++..
T Consensus 79 ~~l~~~~~v~~--~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~ 120 (244)
T 3q6o_A 79 SAVCRDFNIPG--FPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRE 120 (244)
T ss_dssp HHHHHHTTCCS--SSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHH
T ss_pred HHHHHHcCCCc--cCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHH
Confidence 44566677764 7888888852 4443 3334 45555443
No 189
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=90.20 E-value=1.3 Score=36.59 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=30.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+|+.. +|-+++++ +|++.+...|..+.+++....
T Consensus 182 ~~l~~~~~v~~--~Pt~~~~~-~G~~~~~~~G~~~~~~l~~~l 221 (226)
T 1a8l_A 182 PEWADQYNVMA--VPKIVIQV-NGEDRVEFEGAYPEKMFLEKL 221 (226)
T ss_dssp HHHHHHTTCCS--SCEEEEEE-TTEEEEEEESCCCHHHHHHHH
T ss_pred HHHHHhCCCcc--cCeEEEEe-CCceeEEEcCCCCHHHHHHHH
Confidence 45667778875 78766665 999999999999988765443
No 190
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=89.83 E-value=0.51 Score=32.50 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=20.3
Q ss_pred HHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+.+|+.. +|-+++ +|++ ...|..++++++...
T Consensus 50 ~~~~v~~--~Pt~~~---~G~~--~~~G~~~~~~l~~~l 81 (85)
T 1fo5_A 50 MEYGIMA--VPTIVI---NGDV--EFIGAPTKEALVEAI 81 (85)
T ss_dssp TSTTTCC--SSEEEE---TTEE--ECCSSSSSHHHHHHH
T ss_pred HHCCCcc--cCEEEE---CCEE--eeecCCCHHHHHHHH
Confidence 3345553 787777 7898 445666677766543
No 191
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=89.26 E-value=0.063 Score=38.52 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+|+.. +|-++++ .+|++.+...|..+.+++....
T Consensus 63 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l 102 (106)
T 2yj7_A 63 PNTAAQYGIRS--IPTLLLF-KNGQVVDRLVGAQPKEALKERI 102 (106)
Confidence 34556677765 8888888 6999999999988887765543
No 192
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=89.57 E-value=0.56 Score=43.90 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=50.1
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH----------hhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE----------AFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGEN 199 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e----------~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~ 199 (265)
||+.||-++ ++||.||.. .+.+.+++.++.|+..++-
T Consensus 370 ~k~vlv~f~---------a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~------------------------ 416 (481)
T 3f8u_A 370 NKDVLIEFY---------APWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND------------------------ 416 (481)
T ss_dssp TCEEEEEEE---------CTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSC------------------------
T ss_pred CCcEEEEEe---------cCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchh------------------------
Confidence 788888666 999999873 2344456777777765531
Q ss_pred cccceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcE-EEcccCCCCHHHHHHHH
Q 024610 200 VLQRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRI-RWQGFGMATPEELSSLL 255 (265)
Q Consensus 200 ~l~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grI-RWagsG~at~~E~e~L~ 255 (265)
+-+.+++.. +|-+++++..|+| .+...|..+.+++....
T Consensus 417 ---------------~~~~~~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l 456 (481)
T 3f8u_A 417 ---------------VPSPYEVRG--FPTIYFSPANKKLNPKKYEGGRELSDFISYL 456 (481)
T ss_dssp ---------------CCTTCCCCS--SSEEEEECTTCTTSCEECCSCCSHHHHHHHH
T ss_pred ---------------hHhhCCCcc--cCEEEEEeCCCeEeeeEeCCCCCHHHHHHHH
Confidence 112234443 7888999988875 66777888777765543
No 193
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=89.37 E-value=2.3 Score=33.24 Aligned_cols=35 Identities=11% Similarity=0.378 Sum_probs=24.1
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH------hh-cc-CCCeeEEEEeccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SD-SKNVHLYEVSFID 173 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~-~~~vqiv~In~~e 173 (265)
|++.||-++ ++||.||.. .+ .. .+++.++.|++++
T Consensus 23 ~k~vlv~F~---------a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 65 (142)
T 1qgv_A 23 DRVVVIRFG---------HDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE 65 (142)
T ss_dssp SSEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT
T ss_pred CCEEEEEEE---------CCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 788888666 899999873 11 11 2457888888765
No 194
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.88 E-value=1.2 Score=34.01 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=24.6
Q ss_pred HHHHHHhccc----CCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610 213 YYFRKELKIL----NLLTGYIFLLDKFGRIRWQGFGMATPEEL 251 (265)
Q Consensus 213 ~~iRe~Lgi~----N~~vGYVyLVD~~grIRWagsG~at~~E~ 251 (265)
.++.+.+++. -..+|-++++ .+|++.....|..+.+++
T Consensus 71 ~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~~~~G~~~~~~l 112 (137)
T 2dj0_A 71 TDVSTRYKVSTSPLTKQLPTLILF-QGGKEAMRRPQIDKKGRA 112 (137)
T ss_dssp HHHHHHTTCCCCSSSSCSSEEEEE-SSSSEEEEESCBCSSSCB
T ss_pred HHHHHHccCcccCCcCCCCEEEEE-ECCEEEEEecCcCchHHH
Confidence 3344555554 0137777777 599999988888776543
No 195
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=86.78 E-value=0.96 Score=38.54 Aligned_cols=79 Identities=8% Similarity=-0.028 Sum_probs=50.5
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVL 201 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l 201 (265)
.|++.||-++ ++||.+|.. .+ ...+++.++.|++. +.
T Consensus 119 ~~k~vvV~F~---------a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~-------------------------- 162 (217)
T 2trc_P 119 KVTTIVVNIY---------EDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NT-------------------------- 162 (217)
T ss_dssp TTCEEEEEEE---------CTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HH--------------------------
T ss_pred CCcEEEEEEE---------CCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cH--------------------------
Confidence 3577777666 899999873 22 33467778877764 10
Q ss_pred cceeEEEcCChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCH-------HHHHHHHHHH
Q 024610 202 QRQIVYSFGDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATP-------EELSSLLSCT 258 (265)
Q Consensus 202 ~~~~~y~~g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~-------~E~e~L~k~~ 258 (265)
++-+.+++.+ +|-++++. +|++...-.|..+. ++++.+.+-.
T Consensus 163 ------------~l~~~~~i~~--~PTl~~~~-~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 163 ------------GAGDRFSSDV--LPTLLVYK-GGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp ------------TCSTTSCGGG--CSEEEEEE-TTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred ------------HHHHHCCCCC--CCEEEEEE-CCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 0112234544 77777776 99998888887664 7777665543
No 196
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=85.15 E-value=9.1 Score=31.42 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=28.4
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..++-+.+|+.- ++.+++++ +|++. .-.|..+.+++.....
T Consensus 78 ~~~l~~~~~v~~--~Pt~~~~~-~g~~~-~~~g~~~~~~l~~~i~ 118 (241)
T 3idv_A 78 ASVLASRFDVSG--YPTIKILK-KGQAV-DYEGSRTQEEIVAKVR 118 (241)
T ss_dssp CHHHHHHTTCCS--SSEEEEEE-TTEEE-ECCSCSCHHHHHHHHH
T ss_pred CHHHHHhcCCCc--CCEEEEEc-CCCcc-cccCcccHHHHHHHHh
Confidence 355777788875 88888888 45544 3678888887765543
No 197
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=84.92 E-value=1.6 Score=29.88 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=22.2
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
++.+.+|+.. +|-+++ +|++|+ .|..+++++..+.
T Consensus 46 ~~~~~~~v~~--~Pt~~~---~G~~~~--~G~~~~~~l~~~l 80 (85)
T 1nho_A 46 EKAIEYGLMA--VPAIAI---NGVVRF--VGAPSREELFEAI 80 (85)
T ss_dssp GGGGGTCSSC--SSEEEE---TTTEEE--ECSSCCHHHHHHH
T ss_pred HHHHhCCcee--eCEEEE---CCEEEE--ccCCCHHHHHHHH
Confidence 3445667764 887777 788854 4555666665443
No 198
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=84.73 E-value=1.7 Score=38.02 Aligned_cols=36 Identities=6% Similarity=-0.010 Sum_probs=24.9
Q ss_pred CCceEEEEEeeeccchHHHhhhcchhHH------hh-ccCCCeeEEEEeccc
Q 024610 129 IPKVSLVCLTFRASSQAMVDSWSSPFFE------AF-SDSKNVHLYEVSFID 173 (265)
Q Consensus 129 ~gKvSIV~l~~~~~gq~~~~sw~~p~~e------~~-~~~~~vqiv~In~~e 173 (265)
.|++.||-|+ ++||.||.. .+ ...+++.++.|++.+
T Consensus 132 ~~k~VvV~Fy---------a~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~ 174 (245)
T 1a0r_P 132 KITTIVVHIY---------EDGIKGCDALNSSLICLAAEYPMVKFCKIKASN 174 (245)
T ss_dssp TTCEEEEEEE---------CTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH
T ss_pred CCCEEEEEEE---------CCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3678888666 999999873 11 344668888887644
No 199
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=84.37 E-value=8 Score=30.89 Aligned_cols=40 Identities=3% Similarity=-0.163 Sum_probs=29.8
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
++-..+||.. ++-+.|.. +|++.+.-.|..+.++++...+
T Consensus 80 ~la~~ygV~s--iPTlilFk-dG~~v~~~vG~~~k~~l~~~l~ 119 (137)
T 2qsi_A 80 GLMARFGVAV--CPSLAVVQ-PERTLGVIAKIQDWSSYLAQIG 119 (137)
T ss_dssp HHHHHHTCCS--SSEEEEEE-CCEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHcCCcc--CCEEEEEE-CCEEEEEEeCCCCHHHHHHHHH
Confidence 3455666665 77677775 9999999999999887765543
No 200
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=84.02 E-value=2.6 Score=36.07 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=48.7
Q ss_pred HHhhhcchhHHhhccCCCeeEEEEecccchhhccccchHHHHHHHHhcCCCCCccccceeEEEcCChHHHHHHhcccCCc
Q 024610 146 MVDSWSSPFFEAFSDSKNVHLYEVSFIDSWLLCRSPIKRILLKIMRKSKDAGENVLQRQIVYSFGDHYYFRKELKILNLL 225 (265)
Q Consensus 146 ~~~sw~~p~~e~~~~~~~vqiv~In~~e~~lk~~~~lk~~~~~~lrk~~p~~~~~l~~~~~y~~g~~~~iRe~Lgi~N~~ 225 (265)
++-.|.+.+.+.+.....-++|=|++.|.+.+. .| .+....+. ...+...-+.+-++-++||+....
T Consensus 89 hlPgf~~~~d~~~k~kGvd~I~ciSVND~FVm~-----AW-----~k~~~~~~---~~~i~~laD~~~eftkalGl~~~~ 155 (199)
T 4h86_A 89 HIPGYINYLDELVKEKEVDQVIVVTVDNPFANQ-----AW-----AKSLGVKD---TTHIKFASDPGCAFTKSIGFELAV 155 (199)
T ss_dssp THHHHHHHHHHHHHHSCCCEEEEEESSCHHHHH-----HH-----HHHTTCCC---CSSEEEEECGGGHHHHHTTCEEEE
T ss_pred hChHHHHHHHHHHHhcCCcEEEEEEcCCHHHHH-----HH-----HHHhcccc---cccccccCCcchHHHHhcCceeec
Confidence 333444444333344433479999999976522 22 33333210 112222224467899999986432
Q ss_pred -------ccEEEEEeCCCcEEEcccC
Q 024610 226 -------TGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 226 -------vGYVyLVD~~grIRWagsG 244 (265)
-=|++||| +|+|.+..--
T Consensus 156 ~~gg~RS~Rya~IVd-DGvV~~~~vE 180 (199)
T 4h86_A 156 GDGVYWSGRWAMVVE-NGIVTYAAKE 180 (199)
T ss_dssp ETTEEEECSEEEEEE-TTEEEEEEEC
T ss_pred CCCcceeeEEEEEEE-CCEEEEEEEe
Confidence 24899999 9999988654
No 201
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=82.37 E-value=0.99 Score=37.46 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=25.8
Q ss_pred CceEEEEEeeeccchHHHhhhcchhH------HhhccC--CCeeEEEEecccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFF------EAFSDS--KNVHLYEVSFIDS 174 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~------e~~~~~--~~vqiv~In~~e~ 174 (265)
+++.||-++ ++||.||. +.+.++ ..+.++.|+++|+
T Consensus 41 ~k~VVVdF~---------A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~ 84 (160)
T 2av4_A 41 ERLVCIRFG---------HDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEV 84 (160)
T ss_dssp SSEEEEEEE---------CTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTC
T ss_pred CCEEEEEEE---------CCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCC
Confidence 578888666 99999986 333222 3488999998884
No 202
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=81.90 E-value=9.1 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.1
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC-CHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA-TPEELSSL 254 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a-t~~E~e~L 254 (265)
..++.+.+|+.. +|-+++ +|++++. |.. +.+++..+
T Consensus 39 ~~~~~~~~~v~~--~Pt~~~---~G~~~~~--G~~~~~~~l~~~ 75 (77)
T 1ilo_A 39 EMDQILEAGLTA--LPGLAV---DGELKIM--GRVASKEEIKKI 75 (77)
T ss_dssp SHHHHHHHTCSS--SSCEEE---TTEEEEC--SSCCCHHHHHHH
T ss_pred CHHHHHHCCCCc--CCEEEE---CCEEEEc--CCCCCHHHHHHH
Confidence 456677888875 887777 8999988 775 88887654
No 203
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=80.56 E-value=10 Score=32.21 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
.++.+.+++.- +|-+|+ +|+++ ..|..+.+++.....
T Consensus 186 ~~~~~~~~V~~--vPt~~i---~G~~~--~~G~~~~~~l~~~l~ 222 (243)
T 2hls_A 186 PDIADKYGVMS--VPSIAI---NGYLV--FVGVPYEEDFLDYVK 222 (243)
T ss_dssp HHHHHHTTCCS--SSEEEE---TTEEE--EESCCCHHHHHHHHH
T ss_pred HHHHHHcCCee--eCeEEE---CCEEE--EeCCCCHHHHHHHHH
Confidence 45667777774 888887 78887 567777777655443
No 204
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=80.35 E-value=4.7 Score=35.64 Aligned_cols=22 Identities=0% Similarity=-0.046 Sum_probs=15.9
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCc
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGR 237 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~gr 237 (265)
.++-+.+||.. +|-+++++ +|+
T Consensus 81 ~~l~~~~~I~~--~Pt~~~~~-~g~ 102 (298)
T 3ed3_A 81 KALCAKYDVNG--FPTLMVFR-PPK 102 (298)
T ss_dssp HHHHHHTTCCB--SSEEEEEE-CCC
T ss_pred HHHHHhCCCCc--cceEEEEE-CCc
Confidence 55667778875 78888888 465
No 205
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=80.12 E-value=4 Score=32.17 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
++-+.+||.- +|-++++ .+|++...-.|..+.+++....
T Consensus 82 ~la~~~~V~~--iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i 120 (142)
T 2es7_A 82 AIGDRFNVRR--FPATLVF-TDGKLRGALSGIHPWAELLTLM 120 (142)
T ss_dssp HHHHTTTCCS--SSEEEEE-SCC----CEESCCCHHHHHHHH
T ss_pred HHHHhcCCCc--CCeEEEE-eCCEEEEEEeCCCCHHHHHHHH
Confidence 3556677775 8888888 7999999999998887765544
No 206
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=79.98 E-value=6.9 Score=32.27 Aligned_cols=37 Identities=5% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
.++.+.+||.. +|.+++ +|++ ....|..+.+++....
T Consensus 179 ~~l~~~~~v~~--~Pt~~~---~G~~-~~~~G~~~~~~l~~~l 215 (229)
T 2ywm_A 179 QDLAEQFQVVG--VPKIVI---NKGV-AEFVGAQPENAFLGYI 215 (229)
T ss_dssp HHHHHHTTCCS--SSEEEE---GGGT-EEEESCCCHHHHHHHH
T ss_pred HHHHHHcCCcc--cCEEEE---CCEE-EEeeCCCCHHHHHHHH
Confidence 45677788875 888887 5674 4466777777665443
No 207
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=79.60 E-value=23 Score=28.89 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=29.1
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+...++.+.+||.. +|-+++++ +|++.. -.|..+.+++....
T Consensus 191 ~~~~~l~~~~~v~~--~Pt~~~~~-~g~~~~-~~g~~~~~~l~~~l 232 (241)
T 3idv_A 191 TAETDLAKRFDVSG--YPTLKIFR-KGRPYD-YNGPREKYGIVDYM 232 (241)
T ss_dssp TTCHHHHHHTTCCS--SSEEEEEE-TTEEEE-CCSCCSHHHHHHHH
T ss_pred CCCHHHHHHcCCcc--cCEEEEEE-CCeEEE-ecCCCCHHHHHHHH
Confidence 33466888888885 88777777 577665 57777777665543
No 208
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=78.81 E-value=5.6 Score=33.22 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=32.2
Q ss_pred CChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhhhc
Q 024610 210 GDHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLLLE 263 (265)
Q Consensus 210 g~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~Ll~ 263 (265)
..+..+-+.+|+.- ||-+|+.| |+ .-.|+.++++++.+......++.
T Consensus 168 ~~~~~l~~~~gV~g--tPt~v~~d--G~---~~~G~~~~~~l~~~l~~~~~~~~ 214 (216)
T 1eej_A 168 ADHYALGVQLGVSG--TPAVVLSN--GT---LVPGYQPPKEMKEFLDEHQKMTS 214 (216)
T ss_dssp HHHHHHHHHHTCCS--SSEEECTT--SC---EEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc--cCEEEEcC--Ce---EecCCCCHHHHHHHHHHhhhhcc
Confidence 33466778999986 99886545 53 23688889998877665554443
No 209
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=76.64 E-value=3.8 Score=39.39 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=14.2
Q ss_pred CceEEEEEeeeccchHHHhhhcchhHH
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSSPFFE 156 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~p~~e 156 (265)
+|+.||-++ ++||.||..
T Consensus 42 ~k~VlV~Fy---------A~WC~pCk~ 59 (470)
T 3qcp_A 42 LCPWIVLFY---------NDGCGACRR 59 (470)
T ss_dssp GSCEEEEEE---------CTTCHHHHH
T ss_pred CCeEEEEEE---------CCCCHHHHH
Confidence 477888666 899999873
No 210
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=75.43 E-value=8.5 Score=30.94 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=25.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCC-CcEEEcccCCCCHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKF-GRIRWQGFGMATPEELSS 253 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~-grIRWagsG~at~~E~e~ 253 (265)
..+.+.+++.. +++++++|++ |+....-.| .+++|+-.
T Consensus 91 ~~l~~~y~v~~--~P~~~fld~~~G~~l~~~~g-~~~~~fl~ 129 (153)
T 2dlx_A 91 QRYIQFYKLGD--FPYVSILDPRTGQKLVEWHQ-LDVSSFLD 129 (153)
T ss_dssp HHHHHHHTCCS--SSEEEEECTTTCCCCEEESS-CCHHHHHH
T ss_pred HHHHHHcCCCC--CCEEEEEeCCCCcEeeecCC-CCHHHHHH
Confidence 34667788864 8999999998 744333234 67766543
No 211
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=75.37 E-value=12 Score=29.99 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=29.5
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
++-..+||.. ++-+.|.. +|++.+.-.|..+.++++...+
T Consensus 82 ~lA~~ygV~s--IPTlilFk-~G~~v~~~~G~~~k~~l~~~i~ 121 (140)
T 2qgv_A 82 AIGDRFGAFR--FPATLVFT-GGNYRGVLNGIHPWAELINLMR 121 (140)
T ss_dssp HHHHHHTCCS--SSEEEEEE-TTEEEEEEESCCCHHHHHHHHH
T ss_pred HHHHHcCCcc--CCEEEEEE-CCEEEEEEecCCCHHHHHHHHH
Confidence 3556667775 77666665 9999999999988887765543
No 212
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=74.73 E-value=3 Score=31.95 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=24.8
Q ss_pred ceEEEEEeeeccchHHHhhhcchhH------Hhh-ccCCCeeEEEEeccc
Q 024610 131 KVSLVCLTFRASSQAMVDSWSSPFF------EAF-SDSKNVHLYEVSFID 173 (265)
Q Consensus 131 KvSIV~l~~~~~gq~~~~sw~~p~~------e~~-~~~~~vqiv~In~~e 173 (265)
++.||-++ ++||.||. +.+ ..+|++.++.|++++
T Consensus 24 ~~vvv~F~---------a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~ 64 (118)
T 3evi_A 24 VWVIIHLY---------RSSIPMCLLVNQHLSLLARKFPETKFVKAIVNS 64 (118)
T ss_dssp CEEEEEEE---------CTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGG
T ss_pred CeEEEEEe---------CCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHH
Confidence 36666555 99999986 233 446789999999877
No 213
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=73.29 E-value=6.3 Score=30.52 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=24.6
Q ss_pred cccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 225 LTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.+|=+++++ +|+...+-.|+.+++++...
T Consensus 76 g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~ 104 (116)
T 3dml_A 76 FTPTFVLMA-GDVESGRLEGYPGEDFFWPM 104 (116)
T ss_dssp SSSEEEEEE-TTEEEEEEECCCCHHHHHHH
T ss_pred CCCEEEEEE-CCEEEeeecCCCCHHHHHHH
Confidence 377888888 99999999999999877553
No 214
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=71.35 E-value=11 Score=33.43 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=21.4
Q ss_pred cccCCcccEEEEEeCC-CcEEEcccCCCCHHHHHHH
Q 024610 220 KILNLLTGYIFLLDKF-GRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 220 gi~N~~vGYVyLVD~~-grIRWagsG~at~~E~e~L 254 (265)
+|.. +|-+++++.. |++...-.|..+.+++...
T Consensus 318 ~v~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~ 351 (361)
T 3uem_A 318 KVHS--FPTLKFFPASADRTVIDYNGERTLDGFKKF 351 (361)
T ss_dssp CCCS--SSEEEEECSSSSCCCEECCSCSSHHHHHHH
T ss_pred CCcc--cCeEEEEECCCCcceeEecCCCCHHHHHHH
Confidence 4443 7888888544 6655666677777776554
No 215
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=68.54 E-value=27 Score=32.53 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=26.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcE--EEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRI--RWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grI--RWagsG~at~~E~e~L 254 (265)
.++-+.+||.. +|-+++++ +|++ ...-.|..+.+++...
T Consensus 76 ~~l~~~~~v~~--~Pt~~~~~-~g~~~~~~~~~G~~~~~~l~~~ 116 (504)
T 2b5e_A 76 QDLCMEHNIPG--FPSLKIFK-NSDVNNSIDYEGPRTAEAIVQF 116 (504)
T ss_dssp HHHHHHTTCCS--SSEEEEEE-TTCTTCEEECCSCCSHHHHHHH
T ss_pred HHHHHhcCCCc--CCEEEEEe-CCccccceeecCCCCHHHHHHH
Confidence 44666777775 77777776 5775 6666777777765543
No 216
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=65.06 E-value=41 Score=30.22 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=24.9
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEE-cccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRW-QGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRW-agsG~at~~E~e~L 254 (265)
.++-+.+||.- +|-+++.. +|++.. .-.|.-+.+++...
T Consensus 72 ~~l~~~~~v~~--~Pt~~~f~-~G~~~~~~~~G~~~~~~l~~~ 111 (382)
T 2r2j_A 72 SDIAQRYRISK--YPTLKLFR-NGMMMKREYRGQRSVKALADY 111 (382)
T ss_dssp HHHHHHTTCCE--ESEEEEEE-TTEEEEEECCSCCSHHHHHHH
T ss_pred HHHHHhcCCCc--CCEEEEEe-CCcEeeeeecCcchHHHHHHH
Confidence 44566677764 66666554 788776 36777777665543
No 217
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=63.67 E-value=9 Score=35.86 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=19.8
Q ss_pred ccEEEEEeCCCcE--EEcccCCCCHHHHHHHH
Q 024610 226 TGYIFLLDKFGRI--RWQGFGMATPEELSSLL 255 (265)
Q Consensus 226 vGYVyLVD~~grI--RWagsG~at~~E~e~L~ 255 (265)
+|-++++ .+|++ +....|..+.+++....
T Consensus 432 ~Pt~~~~-~~G~~~~~~~~~G~~~~~~l~~~i 462 (504)
T 2b5e_A 432 YPTIVLY-PGGKKSESVVYQGSRSLDSLFDFI 462 (504)
T ss_dssp SSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHH
T ss_pred cCeEEEE-eCCceecceEecCCCCHHHHHHHH
Confidence 6766666 58876 66777877777765443
No 218
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=61.65 E-value=51 Score=32.55 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=28.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..+-+.+||.. +|-+++++ +|++ +.-.|..+.+++.....
T Consensus 499 ~~~~~~~~v~~--~Pt~~~~~-~g~~-~~~~g~~~~~~l~~fi~ 538 (780)
T 3apo_A 499 EGLCNMYNIQA--YPTTVVFN-QSSI-HEYEGHHSAEQILEFIE 538 (780)
T ss_dssp HHHHHHTTCCS--SSEEEEEE-TTEE-EEECSCSCHHHHHHHHH
T ss_pred HHHHHHcCCCc--CCeEEEEc-CCce-eeecCcccHHHHHHHHH
Confidence 44667778875 88888886 5776 56668888877665443
No 219
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=58.11 E-value=4.3 Score=29.67 Aligned_cols=45 Identities=13% Similarity=-0.052 Sum_probs=26.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCC---CHHHHHHHHHHHHhhh
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMA---TPEELSSLLSCTSLLL 262 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~a---t~~E~e~L~k~~~~Ll 262 (265)
.++.+.+|+.. +|-+| + +|++.....|.. +.++++.+.+-...+.
T Consensus 63 ~~l~~~~~v~~--~Pt~~-~--~g~~v~~~~~~~~~~~~~~l~~~l~~~g~~~ 110 (116)
T 2e7p_A 63 SALAHWTGRGT--VPNVF-I--GGKQIGGCDTVVEKHQRNELLPLLQDAAATA 110 (116)
T ss_dssp HHHHHHHSCCS--SCEEE-E--TTEEEECHHHHHHHHHTTCHHHHHHHTTC--
T ss_pred HHHHHHhCCCC--cCEEE-E--CCEEECChHHHHHHHhCChHHHHHHHccccc
Confidence 34677778764 77773 3 578876655554 5556665555444433
No 220
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=56.65 E-value=85 Score=28.75 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=28.6
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
..++-+.+||.. +|-+++. .+|++...-.|..+.+++....
T Consensus 64 ~~~l~~~~~v~~--~Ptl~~~-~~g~~~~~~~G~~~~~~l~~~~ 104 (481)
T 3f8u_A 64 NTNTCNKYGVSG--YPTLKIF-RDGEEAGAYDGPRTADGIVSHL 104 (481)
T ss_dssp CHHHHHHTTCCE--ESEEEEE-ETTEEEEECCSCSSHHHHHHHH
T ss_pred CHHHHHhcCCCC--CCEEEEE-eCCceeeeecCccCHHHHHHHH
Confidence 355667778875 7755555 5888888888888877765544
No 221
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=50.63 E-value=85 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=21.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCCC---cEEEcccCCCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFG---RIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~g---rIRWagsG~at~~E~e~L~ 255 (265)
.++-+.+|+.. +|-+.+.. +| .+|+.| ..+++++..+.
T Consensus 68 ~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~~G--~~~~~~l~~~l 108 (226)
T 1a8l_A 68 KELAKRYRIDR--APATTITQ-DGKDFGVRYFG--LPAGHEFAAFL 108 (226)
T ss_dssp HHHHHHTTCCS--SSEEEEEE-TTBCCSEEEES--CCCTTHHHHHH
T ss_pred HHHHHHcCCCc--CceEEEEc-CCceeeEEEec--cCcHHHHHHHH
Confidence 34556677774 67666664 45 367764 44555554443
No 222
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=50.49 E-value=17 Score=27.04 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=23.6
Q ss_pred cCCcccEEEEEeCCCc-EEEcccCCCCHHHHHHHHHHHHhh
Q 024610 222 LNLLTGYIFLLDKFGR-IRWQGFGMATPEELSSLLSCTSLL 261 (265)
Q Consensus 222 ~N~~vGYVyLVD~~gr-IRWagsG~at~~E~e~L~k~~~~L 261 (265)
.....|++||+|--++ ..|.|++. ++.|...-...+..|
T Consensus 24 ~sLns~d~FILd~g~~iyvW~G~~s-~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 24 ESFNNGDCFILDLGNNIHQWCGSNS-NRYERLKATQVSKGI 63 (104)
T ss_dssp GGCCTTSEEEEECSSEEEEEECTTC-CHHHHHHHHHHHHHH
T ss_pred HHcCCCCeEEEeCCCEEEEEeCCCC-CHHHHHHHHHHHHHH
Confidence 3344899999994333 35666655 456665555555544
No 223
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=50.10 E-value=28 Score=34.45 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=25.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccC----CCCHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFG----MATPEELSSLL 255 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG----~at~~E~e~L~ 255 (265)
..+-+.+||.. +|-++++ .+|++.....| ..+.+++....
T Consensus 719 ~~~~~~~~v~~--~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l 762 (780)
T 3apo_A 719 PQTCQKAGIKA--YPSVKLY-QYERAKKSIWEEQINSRDAKTIAALI 762 (780)
T ss_dssp HHHHHHTTCCS--SSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHhcCCCc--CCEEEEE-cCCCccccccCcccCCcCHHHHHHHH
Confidence 44556677764 7777777 57887654444 45666655443
No 224
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=49.25 E-value=84 Score=29.57 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=24.2
Q ss_pred ChHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 211 DHYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 211 ~~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
...++.+.+|+.. +|-+++ +|+..+. |..+.+++...
T Consensus 158 ~~~~~~~~~~i~s--vPt~~i---~g~~~~~--G~~~~~~l~~~ 194 (521)
T 1hyu_A 158 TFQNEITERNVMG--VPAVFV---NGKEFGQ--GRMTLTEIVAK 194 (521)
T ss_dssp TCHHHHHHTTCCS--SSEEEE---TTEEEEE--SCCCHHHHHHH
T ss_pred hhHHHHHHhCCCc--cCEEEE---CCEEEec--CCCCHHHHHHH
Confidence 3455667777764 777766 6777654 77777766554
No 225
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2, MCSG, protein structur initiative; 1.91A {Vibrio parahaemolyticus}
Probab=48.32 E-value=7.1 Score=31.37 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=17.3
Q ss_pred HhcccCCcccEEEEEeCCCcEEEcc
Q 024610 218 ELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
.+.+.+ .||+||+|.+|+|.-..
T Consensus 58 ~~~~g~--~GY~fi~d~~G~~i~hp 80 (174)
T 2qhk_A 58 AMRFES--DGYFFAYDSQGINTLHA 80 (174)
T ss_dssp HCCSBT--TBCCEEECTTSBEEEES
T ss_pred hcEECC--CCEEEEEeCCCCEEEcC
Confidence 344543 89999999999987543
No 226
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=44.61 E-value=17 Score=30.17 Aligned_cols=27 Identities=4% Similarity=-0.048 Sum_probs=18.2
Q ss_pred hhcchhHH----------hhc-cC--CCeeEEEEecccch
Q 024610 149 SWSSPFFE----------AFS-DS--KNVHLYEVSFIDSW 175 (265)
Q Consensus 149 sw~~p~~e----------~~~-~~--~~vqiv~In~~e~~ 175 (265)
.||.||.. .|. ++ ..+.++.|+++++.
T Consensus 54 ~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~ 93 (178)
T 3ga4_A 54 MSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP 93 (178)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH
T ss_pred CCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH
Confidence 69999872 232 11 45888888888854
No 227
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=43.53 E-value=29 Score=26.27 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=23.6
Q ss_pred hcccCCcccEEEEEeCCCcE--EEcccCCCCHHHHHHHHHHHHhh
Q 024610 219 LKILNLLTGYIFLLDKFGRI--RWQGFGMATPEELSSLLSCTSLL 261 (265)
Q Consensus 219 Lgi~N~~vGYVyLVD~~grI--RWagsG~at~~E~e~L~k~~~~L 261 (265)
+.......|++||+| .|.. .|.|++. ++.|...-...+..|
T Consensus 31 ~~~ssLns~D~FILd-~g~~iyvW~G~~s-s~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 31 LATSSLNSGDCFLLD-AGLTIYQFNGSKS-SPQEKNKAAEVARAI 73 (114)
T ss_dssp CCSSSCCTTSEEEEE-ETTEEEECCCTTC-CHHHHHHHHHHHHHH
T ss_pred CCHHHcCCCCeEEEe-cCCEEEEEeCCCC-CHHHHHHHHHHHHHh
Confidence 334444589999999 4544 4555554 555555444444433
No 228
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=43.38 E-value=16 Score=30.37 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=21.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEc
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWa 241 (265)
..|.+.+. . ..||+||||++|+|...
T Consensus 170 ~~l~~~~~-~--~~g~~~l~d~~G~ii~~ 195 (274)
T 3lic_A 170 DRLPEQLG-I--APSRLVVLDDQGRLIFH 195 (274)
T ss_dssp GGHHHHHT-S--CGGGEEEECTTSCEEEC
T ss_pred HHHHHHhc-c--CCceEEEECCCCCEEEe
Confidence 55677776 4 79999999999999864
No 229
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=42.43 E-value=13 Score=26.83 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=14.4
Q ss_pred ccEEEEEeCCCcEEEccc
Q 024610 226 TGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 226 vGYVyLVD~~grIRWags 243 (265)
.-=|+++|.+|+|.|+-.
T Consensus 15 ~~gviv~D~~g~I~~~N~ 32 (121)
T 4hi4_A 15 SANVMIADNDLNIIYMNR 32 (121)
T ss_dssp SSEEEEEETTCBEEEECH
T ss_pred CccEEEEcCCCeEEEecH
Confidence 445789999999999743
No 230
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=39.12 E-value=63 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=15.9
Q ss_pred hhhcchhHHh---hcc-CCCeeEEEEecc
Q 024610 148 DSWSSPFFEA---FSD-SKNVHLYEVSFI 172 (265)
Q Consensus 148 ~sw~~p~~e~---~~~-~~~vqiv~In~~ 172 (265)
++||.+|... +.+ ..++.+..|+++
T Consensus 24 ~~~C~~C~~~~~~L~~l~~~i~~~~vdi~ 52 (100)
T 1wjk_A 24 KAPCPLCDEAKEVLQPYKDRFILQEVDIT 52 (100)
T ss_dssp CSSCHHHHHHHHHTSTTSSSSEEEEEETT
T ss_pred CCCCcchHHHHHHHHHhhhCCeEEEEECC
Confidence 8899999842 221 234677777765
No 231
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=39.11 E-value=13 Score=30.56 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=20.2
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcc
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWag 242 (265)
..+.+.+. ...||+||||++|.|....
T Consensus 153 ~~l~~~~~---~~~g~~~l~d~~G~ii~~~ 179 (260)
T 3by9_A 153 SAIEQGWQ---NKSSYFVATDDHQVVFMSS 179 (260)
T ss_dssp HHHHHTCC---CSSCEEEEECTTCBEEEES
T ss_pred HHHHHHHh---cCCCcEEEECCCCeEEEcC
Confidence 45555444 3689999999999998753
No 232
>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A {Vibrio parahaemolyticus}
Probab=38.16 E-value=13 Score=29.13 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=17.2
Q ss_pred HHhcccCCcccEEEEEeCCCcEEEc
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRWa 241 (265)
+.+.+.+ .||+|++|.+|++.=.
T Consensus 50 ~~ir~g~--~gY~fv~d~~G~~l~h 72 (146)
T 4exo_A 50 KAMRFES--DGYFFAYDSQGINTLH 72 (146)
T ss_dssp HHCCSBT--TBCCEEECTTSBEEEE
T ss_pred HhCEECC--CCEEEEEeCCCcEEEe
Confidence 3444543 8999999999998644
No 233
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=37.66 E-value=19 Score=28.78 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHhcc-cCCcccEEEEEeCCCcEEEcc
Q 024610 213 YYFRKELKI-LNLLTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 213 ~~iRe~Lgi-~N~~vGYVyLVD~~grIRWag 242 (265)
..+.+.+.- .....||+||||++|+|....
T Consensus 145 ~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~~ 175 (240)
T 3c8c_A 145 AELAELVNEVKLFDAGYVFIVSEDGTTIAHP 175 (240)
T ss_dssp HHHHHHHTCSCCTTSEEEEEEETTSBEEECS
T ss_pred HHHHHHHHhcccCCceEEEEEcCCCcEEEeC
Confidence 455555432 223579999999999998643
No 234
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=36.89 E-value=93 Score=20.80 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=19.4
Q ss_pred HHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHH
Q 024610 214 YFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEEL 251 (265)
Q Consensus 214 ~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~ 251 (265)
++-+.+|+.- +|-+++ +|++++.|. .++.+|+
T Consensus 46 ~~~~~~gv~~--vPt~~i---~g~~~~~G~-~~~~~~l 77 (80)
T 2k8s_A 46 AEAEKAGVKS--VPALVI---DGAAFHINF-GAGIDDL 77 (80)
T ss_dssp HHHHHHTCCE--EEEEEE---TTEEEEEEE-EEEHHHH
T ss_pred HHHHHcCCCc--CCEEEE---CCEEEEecc-CcCHHHh
Confidence 3445667763 776665 788887654 3445544
No 235
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=36.38 E-value=20 Score=22.78 Aligned_cols=14 Identities=43% Similarity=0.368 Sum_probs=12.3
Q ss_pred EEEEeCCCcEEEcc
Q 024610 229 IFLLDKFGRIRWQG 242 (265)
Q Consensus 229 VyLVD~~grIRWag 242 (265)
|+++|.+|+|.|+-
T Consensus 5 i~~~d~~g~i~~~N 18 (96)
T 3a0s_A 5 IITLSKDGRITEWN 18 (96)
T ss_dssp EEEEETTSBEEEEC
T ss_pred EEEEcCCCCEeehh
Confidence 78999999999864
No 236
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=34.53 E-value=18 Score=29.20 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.5
Q ss_pred cEEEEEeCCCcEEEcccC
Q 024610 227 GYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 227 GYVyLVD~~grIRWagsG 244 (265)
||+||+|.+|+|......
T Consensus 163 g~~~l~d~~G~ii~~~~~ 180 (217)
T 4dah_A 163 VYIEVVNQDGKMIFASGQ 180 (217)
T ss_dssp SCEEEEETTSCEEEEESC
T ss_pred cEEEEEcCCCCEEEeCCC
Confidence 999999999999876544
No 237
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=32.33 E-value=23 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.0
Q ss_pred EEEEEeCCCcEEEcc
Q 024610 228 YIFLLDKFGRIRWQG 242 (265)
Q Consensus 228 YVyLVD~~grIRWag 242 (265)
=|+++|.+|+|.|+-
T Consensus 19 ~i~~~D~~g~I~~~N 33 (115)
T 3b33_A 19 ATLILDDGLAIRYAN 33 (115)
T ss_dssp EEEEECTTCBEEEEC
T ss_pred eEEEECCCCcEEEEC
Confidence 478999999999964
No 238
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=32.02 E-value=59 Score=23.96 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=24.4
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPE 249 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~ 249 (265)
..+.+.++.. .|.|+|+|++|+++..++...+++
T Consensus 13 ~~~~~~~~~~---~~~i~l~d~~~~l~~~a~~g~~~~ 46 (151)
T 3hcy_A 13 DAIQGALNCD---RASILLFDEAGTMRFVAARGLSEH 46 (151)
T ss_dssp HHHHHHHCCS---EEEEEEECTTSCEEEEEEESCCHH
T ss_pred HHHHHhhcCC---EEEEEEEcCCCcEEEEeeCCCCHH
Confidence 4466666666 899999999998887765444443
No 239
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila melanogaster}
Probab=31.83 E-value=17 Score=29.49 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=16.8
Q ss_pred HHhcccCCcccEEEEEeCCCcEE
Q 024610 217 KELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIR 239 (265)
+..|... +||=||||.+|.|=
T Consensus 63 ~~~Gw~D--IGYnFlI~~dG~Vy 83 (150)
T 2xz8_A 63 ESNGYKD--INYNFVAAGDENIY 83 (150)
T ss_dssp HTTCCSS--CSCSEEECTTSCEE
T ss_pred HhCCCCC--CCCcEEEcCCCeEE
Confidence 3566665 99999999999883
No 240
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=31.59 E-value=24 Score=27.64 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=16.8
Q ss_pred CCcccEEEEEeCCCcEEEcccC
Q 024610 223 NLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 223 N~~vGYVyLVD~~grIRWagsG 244 (265)
|...-=|++||.+|+|+|.-.+
T Consensus 26 ~~~~~gI~~vD~~g~I~~~N~a 47 (151)
T 2qkp_A 26 NHLPLEITFVNKDDIFQYYNDS 47 (151)
T ss_dssp HHSSSEEEEEETTSBEEEECCC
T ss_pred HhCCCceEEEcCCCeEEEEeCC
Confidence 3334458899999999998666
No 241
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=31.54 E-value=27 Score=28.73 Aligned_cols=29 Identities=34% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHhc-ccCCcccEEEEEeCCCcEEEc
Q 024610 213 YYFRKELK-ILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 213 ~~iRe~Lg-i~N~~vGYVyLVD~~grIRWa 241 (265)
..|.+.+. +.-...||+||||.+|+|...
T Consensus 152 ~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~ 181 (254)
T 3lif_A 152 EYFSTFYKTFDLGPGGSISLLHSDGRLLIQ 181 (254)
T ss_dssp HHHHHHHTTSCCCTTCEEEEEETTSBEEEE
T ss_pred HHHHHHHHhcCcCCCcEEEEEeCCCcEEEE
Confidence 44444442 222358999999999999876
No 242
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=31.08 E-value=68 Score=26.97 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=32.2
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHH
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLL 255 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~ 255 (265)
+..+-+.+|+.- ||.+++.|.+|++ +.-.|+.++++++.+.
T Consensus 188 ~~~l~~~~gv~g--tPt~vi~~~~G~~-~~~~G~~~~~~L~~~l 228 (241)
T 1v58_A 188 NEKLMDDLGANV--TPAIYYMSKENTL-QQAVGLPDQKTLNIIM 228 (241)
T ss_dssp HHHHHHHHTCCS--SCEEEEEETTTEE-EEEESSCCHHHHHHHT
T ss_pred HHHHHHHcCCCC--CCEEEEECCCCCE-EEecCCCCHHHHHHHH
Confidence 355668899986 9999999988986 5667888888876554
No 243
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=31.03 E-value=54 Score=23.74 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=25.0
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELS 252 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e 252 (265)
..+++.++.. .|+|||+|+++.++..++-..++++..
T Consensus 16 ~~~~~~~~~~---~~~i~l~d~~~~l~~~~~~g~~~~~~~ 52 (153)
T 2w3g_A 16 HSATSLVDAR---YGAMEVHDRQHRVLHFVYEGIDEETVR 52 (153)
T ss_dssp HHHHHHTTEE---EEEEEEECTTCCEEEEEEESCCHHHHH
T ss_pred HHHHHHhCCC---EEEEEEECCCCCEEEEEEecCCHHHHH
Confidence 3455556555 799999998888888665545554443
No 244
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=30.33 E-value=35 Score=28.69 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHhc-ccCCcccEEEEEeCCCcEEEc
Q 024610 213 YYFRKELK-ILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 213 ~~iRe~Lg-i~N~~vGYVyLVD~~grIRWa 241 (265)
..+.+.+. +.-...||+||||++|+|...
T Consensus 174 ~~l~~~~~~~~~~~~g~~~l~d~~G~ii~~ 203 (291)
T 3li9_A 174 EYVDDVASSIRTFDTGYAFMVSNTGIFLSH 203 (291)
T ss_dssp HHHHHHHTTCCBTTTBEEEEECTTCBBSCC
T ss_pred HHHHHHHHhCCcCCCeEEEEEeCCCeEEEc
Confidence 45555553 222348999999999999764
No 245
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=29.34 E-value=56 Score=25.42 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=25.4
Q ss_pred cccEEEEEeCCCcEEEcccCC---CCHHHHHHHHHHHH
Q 024610 225 LTGYIFLLDKFGRIRWQGFGM---ATPEELSSLLSCTS 259 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWagsG~---at~~E~e~L~k~~~ 259 (265)
++--.-++..+|-| ||.+.. .+|+|+..|.++.+
T Consensus 18 ~~~~aAIig~dGsv-WA~s~gf~~~~p~E~~~i~~~f~ 54 (130)
T 3nul_A 18 HLTAAAILGQDGSV-WAQSAKFPQLKPQEIDGIKKDFE 54 (130)
T ss_dssp CCSEEEEEETTSCE-EEECTTCCCCCHHHHHHHHHHHH
T ss_pred cEeeEEEEeCCCCE-EEcCCCcccCCHHHHHHHHHhcc
Confidence 45556677888886 997643 48999999998754
No 246
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Probab=28.36 E-value=20 Score=29.29 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.2
Q ss_pred HhcccCCcccEEEEEeCCCcEE
Q 024610 218 ELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grIR 239 (265)
..|... +||=||||.+|+|=
T Consensus 57 ~~gw~d--IGYhflI~~dG~Iy 76 (167)
T 2f2l_A 57 SSQKCD--IAYNFLIGGDGNVY 76 (167)
T ss_dssp TSCCSS--CSCSEEECTTSCEE
T ss_pred hCCCCC--cCCcEEEcCCCEEE
Confidence 455554 99999999999984
No 247
>2lvl_A SPAI; lantibiotic SELF-immunity protein, subtilin, immune system, lantibiotic-binding-protein; NMR {Bacillus subtilis}
Probab=28.35 E-value=18 Score=27.66 Aligned_cols=16 Identities=38% Similarity=0.850 Sum_probs=13.7
Q ss_pred cccEEEEEeCCCcEEEc
Q 024610 225 LTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWa 241 (265)
-+|-+|.||.+|| ||.
T Consensus 54 aig~tffvdgdgk-rws 69 (128)
T 2lvl_A 54 AIGQTFFVDGDGK-RWS 69 (128)
T ss_dssp ECCCEEEECSSCC-BCC
T ss_pred eeccEEEEcCCCc-ccC
Confidence 3789999999998 885
No 248
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=27.11 E-value=36 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=16.0
Q ss_pred CCcccEEEEEeCCCcEEEccc
Q 024610 223 NLLTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 223 N~~vGYVyLVD~~grIRWags 243 (265)
+...+.|+++|.+|+|.|..-
T Consensus 6 e~~~d~i~v~d~~G~i~yvn~ 26 (111)
T 2vlg_A 6 QTKTDIHAVLASNGRIIYISA 26 (111)
T ss_dssp ---CCEEEEECTTSBEEEECT
T ss_pred hcCCCEEEEEcCCCeEEEECh
Confidence 445778999999999999854
No 249
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=26.06 E-value=23 Score=29.82 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.5
Q ss_pred cccEEEEEeCCCcEEEcc
Q 024610 225 LTGYIFLLDKFGRIRWQG 242 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWag 242 (265)
..||+||||++|+|....
T Consensus 186 ~~g~~~l~d~~G~ii~~~ 203 (290)
T 3lib_A 186 DTGYAFMVSNSGVILSHP 203 (290)
T ss_dssp TTBCEEEECTTCBBCCCS
T ss_pred CceEEEEEeCCCeEEEcC
Confidence 489999999999998643
No 250
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=25.31 E-value=3.2e+02 Score=23.31 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=23.7
Q ss_pred CceEEEEEeeeccchHHHhhhcc--hhH----Hhhcc-CCCeeEEEEeccc
Q 024610 130 PKVSLVCLTFRASSQAMVDSWSS--PFF----EAFSD-SKNVHLYEVSFID 173 (265)
Q Consensus 130 gKvSIV~l~~~~~gq~~~~sw~~--p~~----e~~~~-~~~vqiv~In~~e 173 (265)
+++.||-++.. +.||. |.. +.+.+ .+++.++.|++++
T Consensus 33 ~~~vlV~Fy~~-------ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~ 76 (248)
T 2c0g_A 33 FPYSVVKFDIA-------SPYGEKHEAFTAFSKSAHKATKDLLIATVGVKD 76 (248)
T ss_dssp SSEEEEEEEES-------SCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECS
T ss_pred CCCEEEEEECC-------CCCCccHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 56777765521 56775 322 23444 5789999999877
No 251
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=23.04 E-value=62 Score=22.80 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=13.9
Q ss_pred cEEEEEeCCCcEEEccc
Q 024610 227 GYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 227 GYVyLVD~~grIRWags 243 (265)
--|+++|.+|+|.|+-.
T Consensus 23 ~~i~~~D~~g~i~~~N~ 39 (118)
T 3fg8_A 23 LGFMALDEDLRIIYVNS 39 (118)
T ss_dssp CEEEEECTTCBEEEECH
T ss_pred ceEEEECCCCeEEEECH
Confidence 34789999999999854
No 252
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=22.99 E-value=1.7e+02 Score=23.91 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=38.8
Q ss_pred hHHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHHHHHhh
Q 024610 212 HYYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLSCTSLL 261 (265)
Q Consensus 212 ~~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k~~~~L 261 (265)
...+-+.+||.. .|-++|++++|++.--..+..+-+....+.+-+-.+
T Consensus 194 ~~~l~~~f~v~~--~Pslvl~~~~g~~~~~~~~~~~r~~~~~~l~~~~~~ 241 (244)
T 3q6o_A 194 EANVVRKFGVTD--FPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGL 241 (244)
T ss_dssp CHHHHHHHTCCC--SSEEEEEETTSCEEECCCSSSSHHHHHHHHHTC---
T ss_pred hHHHHHHcCCCC--CCeEEEEeCCCCeEeeccccccHHHHHHHHHhCCCC
Confidence 378999999997 899999999999999998888888887776654433
No 253
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=22.98 E-value=46 Score=28.97 Aligned_cols=29 Identities=17% Similarity=-0.019 Sum_probs=21.6
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEc
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQ 241 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWa 241 (265)
..+-+.+.......||+||+|.+|.|--.
T Consensus 175 ~~l~~~~~~~~~~~~~~~l~d~~G~~l~~ 203 (295)
T 3lid_A 175 EYLSSLLNYSPVRDFHIELVKHKGFYIAS 203 (295)
T ss_dssp HHHHHHHSEETTTTEECEEEETTSBEEEC
T ss_pred HHHHHHHhhcccCCCcEEEEcCCCCEEec
Confidence 55666665444458999999999998754
No 254
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=22.92 E-value=39 Score=33.22 Aligned_cols=19 Identities=26% Similarity=0.502 Sum_probs=17.4
Q ss_pred ccEEEEEeCCCcEEEcccC
Q 024610 226 TGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 226 vGYVyLVD~~grIRWagsG 244 (265)
++++|++|.+|.|||....
T Consensus 174 ~~~~~i~D~~G~lrW~~~~ 192 (571)
T 3elq_A 174 APFTFIVDTEGEYRWWLDQ 192 (571)
T ss_dssp EEEEEEECTTSCEEEECCG
T ss_pred CCceEEEcCCCcEEEEeCc
Confidence 7899999999999999765
No 255
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=22.35 E-value=93 Score=23.99 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=23.1
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSLLS 256 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L~k 256 (265)
..+-+.+||.- ||.+++ +|++.| |..+.++++....
T Consensus 134 ~~~a~~~gv~g--tPt~~i---~g~~~~---G~~~~~~l~~~i~ 169 (175)
T 3gyk_A 134 MALAQKLGFNG--TPSFVV---EDALVP---GFVEQSQLQDAVD 169 (175)
T ss_dssp HHHHHHHTCCS--SSEEEE---TTEEEC---SCCCHHHHHHHHH
T ss_pred HHHHHHcCCcc--CCEEEE---CCEEee---CCCCHHHHHHHHH
Confidence 33556788875 996665 466544 7777777665543
No 256
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=22.25 E-value=91 Score=23.90 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=26.2
Q ss_pred cccEEEEEeCCCcEEEcccCC--CCHHHHHHHHHHHH
Q 024610 225 LTGYIFLLDKFGRIRWQGFGM--ATPEELSSLLSCTS 259 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWagsG~--at~~E~e~L~k~~~ 259 (265)
++--.-|++.+|-| ||.+.. .+|+|+..|.++.+
T Consensus 15 ~~~~aAIig~dGsv-wA~s~~f~~~~~E~~~i~~~f~ 50 (125)
T 1acf_A 15 AVTQAAILGLDGNT-WATSAGFAVTPAQGTTLAGAFN 50 (125)
T ss_dssp SCSEEEEEETTSCE-EEECTTCCCCHHHHHHHHHHHH
T ss_pred CcceEEEEcCCCCE-EEecCCCccCHHHHHHHHHHhc
Confidence 44455688889965 998755 68999999998765
No 257
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=22.18 E-value=51 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=18.3
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
+.+++..+. -||||.|.+| +|++++.
T Consensus 48 ~~~~~~~~~-----~~i~v~d~~G-~~~~~~~ 73 (142)
T 3by8_A 48 EAVRKRNDL-----LFIVVTDMQS-LRYSHPE 73 (142)
T ss_dssp HHHHHHTTC-----SEEEEEETTC-BBSCCSS
T ss_pred HHHHhhcCC-----cEEEEECCCC-cEEECCC
Confidence 445555443 3999999998 5677775
No 258
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=21.61 E-value=60 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHhcccCCcccEEEEEeCCCcEEEcccC
Q 024610 217 KELKILNLLTGYIFLLDKFGRIRWQGFG 244 (265)
Q Consensus 217 e~Lgi~N~~vGYVyLVD~~grIRWagsG 244 (265)
+.|.++| .--|++-|++|+|-|+-.-
T Consensus 34 ~n~~~n~--ptLvlIYDe~G~lLW~qr~ 59 (148)
T 3bqa_A 34 ENIDKQS--PTMTLIYDENGQLLWAQRD 59 (148)
T ss_dssp HHHHTTC--SCEEEEECTTSCEEEESSC
T ss_pred CcccCCC--CeEEEEEcCCCcEEEecCc
Confidence 5567777 5567788999999998754
No 259
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=21.31 E-value=50 Score=22.79 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=12.7
Q ss_pred EEEEEeCC-CcEEEcc
Q 024610 228 YIFLLDKF-GRIRWQG 242 (265)
Q Consensus 228 YVyLVD~~-grIRWag 242 (265)
=|+++|.+ |+|.++-
T Consensus 10 ~i~~~d~~~g~I~~~N 25 (114)
T 1ll8_A 10 AIFTVDAKTTEILVAN 25 (114)
T ss_dssp EEEEEETTTCBEEEEC
T ss_pred eEEEEECCCCeEEEeh
Confidence 47899999 9999973
No 260
>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB: 2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*
Probab=20.96 E-value=31 Score=27.76 Aligned_cols=20 Identities=25% Similarity=0.477 Sum_probs=15.6
Q ss_pred HhcccCCcccEEEEEeCCCcEE
Q 024610 218 ELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grIR 239 (265)
.+|... +||=||||.+|+|-
T Consensus 56 ~~g~~d--igyhflI~~dG~I~ 75 (163)
T 1sk4_A 56 TRNFCD--IGYHFLVGQDGGVY 75 (163)
T ss_dssp TSCCSS--CSCSEEECTTSCEE
T ss_pred cCCCCC--cCceEEECCCCEEE
Confidence 344444 99999999999984
No 261
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=20.88 E-value=49 Score=23.19 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=13.0
Q ss_pred EEEEEeCCCcEEEcc
Q 024610 228 YIFLLDKFGRIRWQG 242 (265)
Q Consensus 228 YVyLVD~~grIRWag 242 (265)
=|+++|.+|+|.|+-
T Consensus 17 ~i~~~d~~g~i~~~N 31 (120)
T 2gj3_A 17 AISITDLKANILYAN 31 (120)
T ss_dssp EEEEECTTCBEEEEC
T ss_pred eEEEECCCCCEEeeh
Confidence 578999999999974
No 262
>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern recognition proteins, immune syste; 1.70A {Homo sapiens} SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A* 3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A* 3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A* 3qv4_A* 3rt4_A* ...
Probab=20.29 E-value=43 Score=27.34 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=15.1
Q ss_pred HhcccCCcccEEEEEeCCCcEE
Q 024610 218 ELKILNLLTGYIFLLDKFGRIR 239 (265)
Q Consensus 218 ~Lgi~N~~vGYVyLVD~~grIR 239 (265)
.+|..+ +||=||||.+|+|-
T Consensus 66 ~~gw~d--igyhflI~~dG~I~ 85 (175)
T 1yck_A 66 TLGWCD--VGYNFLIGEDGLVY 85 (175)
T ss_dssp TTCCSS--CSCSEEECTTSCEE
T ss_pred cCCCCc--cCceEEECCCCEEE
Confidence 344444 89999999999874
No 263
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=20.26 E-value=74 Score=21.72 Aligned_cols=19 Identities=21% Similarity=-0.045 Sum_probs=14.7
Q ss_pred cccEEEEEeCCCcEEEccc
Q 024610 225 LTGYIFLLDKFGRIRWQGF 243 (265)
Q Consensus 225 ~vGYVyLVD~~grIRWags 243 (265)
..--|+++|.+|+|.++-.
T Consensus 28 ~~~~i~~~d~~g~i~~~N~ 46 (125)
T 3fc7_A 28 SPDGIVHLTTNGTILSVNP 46 (125)
T ss_dssp SCCEEEEEETTSBEEEECH
T ss_pred CCCeEEEEcCCCeEEEECH
Confidence 3445788999999998743
No 264
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=20.14 E-value=25 Score=23.87 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.4
Q ss_pred EEEEEeCCCcEEEcc
Q 024610 228 YIFLLDKFGRIRWQG 242 (265)
Q Consensus 228 YVyLVD~~grIRWag 242 (265)
=|+++|.+|+|.|+-
T Consensus 27 ~i~~~d~~g~i~~~N 41 (118)
T 2w0n_A 27 GVVAVDDRGEVTLIN 41 (118)
T ss_dssp CCEEEBTTTBCCCBC
T ss_pred cEEEECCCCcEeehh
Confidence 368899999999864
No 265
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=20.08 E-value=37 Score=25.58 Aligned_cols=36 Identities=3% Similarity=-0.041 Sum_probs=20.4
Q ss_pred HHHHHHhcccCCcccEEEEEeCCCcEEEcccCCCCHHHHHHH
Q 024610 213 YYFRKELKILNLLTGYIFLLDKFGRIRWQGFGMATPEELSSL 254 (265)
Q Consensus 213 ~~iRe~Lgi~N~~vGYVyLVD~~grIRWagsG~at~~E~e~L 254 (265)
.++.+.+|+. +|-++++. +|++. ..|..++++++.+
T Consensus 70 ~~l~~~ygv~---VP~l~~~~-dG~~v--~~g~~~~~~L~~~ 105 (107)
T 2fgx_A 70 EHLTRLYNDR---VPVLFAVN-EDKEL--CHYFLDSDVIGAY 105 (107)
T ss_dssp HHHHHHSTTS---CSEEEETT-TTEEE--ECSSCCCHHHHHH
T ss_pred HHHHHHhCCC---CceEEEEE-CCEEE--EecCCCHHHHHHH
Confidence 3445556653 77665554 56765 2366666666543
Done!