Your job contains 1 sequence.
>024611
MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE
GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN
PVDLDIAGDADGSGTPSDDPSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKK
VEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSENYDEDEFYPEDDFNDDDEFY
DSDSSDVVPLGSLPVDHIAERLQRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024611
(265 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 745 8.4e-74 1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 441 5.4e-49 3
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 324 3.4e-29 1
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 274 6.8e-24 1
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 152/268 (56%), Positives = 189/268 (70%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKPAAPVYPKLIQE PEGLTK EA E R KGKSL PICKL+KNGVY++LV+DVR+AFE
Sbjct: 301 MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFE 360
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
SSLVKV+C G+ SDYKK+GAKLKELVPCVLLSFDDEQILMWRG++WKS + + P +
Sbjct: 361 LSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPS 420
Query: 121 PVDLDIAGDADGSGTPSDDPS---QGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDL 177
+ + + D S PS++ + T SSPKMISLW+RA+ES+KA++L+E++LGPDDL
Sbjct: 421 LSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVILEELDLGPDDL 480
Query: 178 LKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQSXXXXXXXXXXXXXXXXXX 237
LKKVEE EG S AAEH+Y A+VLS DGA+ + +D S+
Sbjct: 481 LKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSEEYYSDIDDDFDDECSDDES 540
Query: 238 XXXXXXXXXVVPLGSLPVDHIAERLQRK 265
V P+GSLPVD I +L+ +
Sbjct: 541 LDP------VGPVGSLPVDKIVRKLRER 562
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 441 (160.3 bits), Expect = 5.4e-49, Sum P(3) = 5.4e-49
Identities = 81/156 (51%), Positives = 114/156 (73%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP APVYP+LIQ+ PEGLT+ EA +RRKG+ L+PICKL KNGVY LV++V+ AFE
Sbjct: 341 MLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFE 400
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSN 120
LV+++C+GM SD++K+GAKLK+LVPCVL+SF++EQIL+WRG++WKS P +
Sbjct: 401 VCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD 460
Query: 121 PV-DLDIAGDADGSGTPSDDPSQG-TIRSSPKMISL 154
+ D+++ PS P+Q T+ +P + S+
Sbjct: 461 ILEDIEVDTALPEDDEPSVSPNQSQTMTQNPPLDSM 496
Score = 74 (31.1 bits), Expect = 5.4e-49, Sum P(3) = 5.4e-49
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 136 PSDDPSQG---TIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGIS 188
P D+P + +S +++ L K+A+ES ALVLD +L D + K F ++
Sbjct: 547 PEDEPETSEEISKQSIERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVA 602
Score = 38 (18.4 bits), Expect = 5.4e-49, Sum P(3) = 5.4e-49
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 247 VVPLGSLPVDHIAERL 262
V+P G+L VD +A+ L
Sbjct: 685 VMPHGTLKVDELAKLL 700
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 68/149 (45%), Positives = 97/149 (65%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP PVYP+LI+ +GL+ E +R+KG ++ + KLAKNG Y +LV VR+AF
Sbjct: 259 MLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFL 318
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP--EPPSF 118
S LV+++C G+ DYKK+GAKL++LVPC+L++FD EQ+++WRGKD+K E SF
Sbjct: 319 VSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPPKEDDEYSSF 378
Query: 119 ---SNPVDLDIAGDADGSGTPSDDPSQGT 144
+ +D D+ D S D P + T
Sbjct: 379 IHRESSIDSDV--DLSCSRGAQDSPDETT 405
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 49/106 (46%), Positives = 71/106 (66%)
Query: 1 MLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFE 60
MLWKP P+YP+L++ +GL E E+R +G + KL +NGVY+ +V VR FE
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 61 GSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 106
+V+++C + SD K++G KLKE+VPCV + F DEQI++WRGK
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 238 0.00091 113 3 11 23 0.50 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 609 (65 KB)
Total size of DFA: 187 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.62u 0.10s 22.72t Elapsed: 00:00:01
Total cpu time: 22.62u 0.10s 22.72t Elapsed: 00:00:01
Start: Fri May 10 15:36:41 2013 End: Fri May 10 15:36:42 2013