BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024612
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C
PE=1 SV=1
Length = 235
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/263 (75%), Positives = 223/263 (84%), Gaps = 30/263 (11%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK
Sbjct: 61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYK------ 114
Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
+KERAE+LGRISLFCWMGSSVC++LVE+GELGRLS
Sbjct: 115 ------------------------DKERAEILGRISLFCWMGSSVCTSLVEVGELGRLSA 150
Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
S+KKLEKE+ + DKH+NEQY+AK++KSNERSLAL+K+ MD+VVA GLLQLAPKKVTPRVT
Sbjct: 151 SIKKLEKEIGNKDKHQNEQYRAKVEKSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVT 210
Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
GAFGF +SLISCYQLLP+ K+K
Sbjct: 211 GAFGFASSLISCYQLLPSHPKSK 233
>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D
PE=1 SV=2
Length = 236
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/264 (75%), Positives = 221/264 (83%), Gaps = 30/264 (11%)
Query: 2 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
+TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62
Query: 62 LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYV 121
LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK
Sbjct: 63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------- 115
Query: 122 HFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTS 181
NKERAELLGRISLFCWMGSSVC+TLVE+GE+GRLS+S
Sbjct: 116 -----------------------NKERAELLGRISLFCWMGSSVCTTLVEVGEMGRLSSS 152
Query: 182 MKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTG 241
MKK+EK LK+ +K+++E Y+AKLKKSNERSLAL+KSAMDIVVA GLLQLAP K+TPRVTG
Sbjct: 153 MKKIEKGLKNGNKYQDEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQLAPTKITPRVTG 212
Query: 242 AFGFVTSLISCYQLLPAPVKAKAP 265
AFGF+TS+ISCYQLLP K K P
Sbjct: 213 AFGFITSIISCYQLLPTRPKIKTP 236
>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E
PE=1 SV=1
Length = 231
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 215/265 (81%), Gaps = 34/265 (12%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct: 1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYK
Sbjct: 61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYK------ 114
Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
NKER ELLGRISLFCW+GSSVC++ VE+GELGRLS+
Sbjct: 115 ------------------------NKERTELLGRISLFCWLGSSVCTSAVEIGELGRLSS 150
Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
SMKK+EKELK D E Y+AKL+KSN+R+LAL+KS+MDI+VA+GLLQLAPK ++PRVT
Sbjct: 151 SMKKMEKELKADD----ELYRAKLQKSNDRTLALIKSSMDIIVAIGLLQLAPKTISPRVT 206
Query: 241 GAFGFVTSLISCYQLLPAPVKAKAP 265
GAFGF TSLISCYQLLP+ K K P
Sbjct: 207 GAFGFTTSLISCYQLLPSRPKLKTP 231
>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica
GN=PEX11-1 PE=2 SV=1
Length = 237
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/267 (70%), Positives = 216/267 (80%), Gaps = 33/267 (12%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVF
Sbjct: 1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
RL K+VNDLH LISP +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYK
Sbjct: 61 RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYK------ 114
Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
NKER + + RISL+CWM SSVC+ LVELGEL RLS
Sbjct: 115 ------------------------NKERTDRIVRISLYCWMASSVCAGLVELGELKRLSK 150
Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
SM+KL +EL+D+DK++N+QY++K+K+S+ER LALVK+AMD+VVAVGLLQL+PKK+TPRVT
Sbjct: 151 SMRKLARELRDTDKYENDQYKSKMKQSDERLLALVKAAMDVVVAVGLLQLSPKKITPRVT 210
Query: 241 GAFGFVTSLISCYQLLP--AP-VKAKA 264
GAFGFVTSLISCYQ LP AP +K KA
Sbjct: 211 GAFGFVTSLISCYQQLPSRAPAIKVKA 237
>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica
GN=PEX11-5 PE=2 SV=1
Length = 233
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/263 (68%), Positives = 212/263 (80%), Gaps = 30/263 (11%)
Query: 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVF
Sbjct: 1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60
Query: 61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLY 120
RLFKFVNDLHALISP +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYK
Sbjct: 61 RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYK------ 114
Query: 121 VHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLST 180
NKERAE L +I+ +C++GS+ C++++E+ EL RLS
Sbjct: 115 ------------------------NKERAEFLSKIAFYCFLGSNTCTSIIEVAELQRLSK 150
Query: 181 SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240
SMKKLEKELK + KNEQYQ KL+K NER LAL+KS++DIVVA+GLLQLAPKKVTPRVT
Sbjct: 151 SMKKLEKELKHQELLKNEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQLAPKKVTPRVT 210
Query: 241 GAFGFVTSLISCYQLLPAPVKAK 263
GAFGF +SLI+CYQLLPAP K+K
Sbjct: 211 GAFGFASSLIACYQLLPAPAKSK 233
>sp|Q54H86|PEX11_DICDI Peroxisomal membrane protein 11 homolog OS=Dictyostelium discoideum
GN=pex11 PE=3 SV=1
Length = 254
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 59/266 (22%)
Query: 18 LNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFVNDLH 70
L + +DKI + +QYG+K L S + ++ ++ ARKV+RL + +
Sbjct: 21 LAQTSGKDKIAKILQYGAKLLGYIFLKRSKHWVDVMKKLETTSGSARKVWRLGNTLAEQQ 80
Query: 71 ALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFL 130
+++ L K KN F FL+ + + +SG +Y ++ F L
Sbjct: 81 KILA------------LFKVKNP----FAFLNILALIRQSG-------MYFYWVFDHLIL 117
Query: 131 PFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELG---------RLSTS 181
T + L + + + LG S W +CS +++L L RL+ +
Sbjct: 118 -----GTNIGLCKFDTVK---LGWYSSVSWFFGLLCSIIIDLNTLAIMLKKEKSLRLTIT 169
Query: 182 MKKLEKELKDSDKH------KN----EQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLA 231
K+ + D H +N +Q+ +KK NE L K+ D+++A LL++
Sbjct: 170 QNKINANNNNIDTHTITSEVENKAIIDQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIY 229
Query: 232 PKKVTPRVTGAFGFVTSLISCYQLLP 257
P + G G +++LI YQ+ P
Sbjct: 230 P--FSQGTIGISGIISALIGAYQMWP 253
>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica
GN=PEX11-4 PE=2 SV=2
Length = 222
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 46/252 (18%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
+V++L K + DK+ + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFV 126
L+ L + P L NA + F D WL R G+
Sbjct: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD------------ 112
Query: 127 SFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLE 186
A L R+S G SV +L + +++
Sbjct: 113 ----------------------AWLARRMSFISAFGESVGYVFFIAMDLIMIRRGLRQER 150
Query: 187 KELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFV 246
K L++ K K+++ + R +A + D+V+ + ++ P G G V
Sbjct: 151 KLLREGGKDKDKEVKKIRMDRVMRLMATAANVADLVIGIADIEPNPFCNHAVTLGISGLV 210
Query: 247 TSLISCYQLLPA 258
++ Y+ P+
Sbjct: 211 SAWAGWYRNWPS 222
>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica
GN=PEX11-4 PE=2 SV=1
Length = 222
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 46/252 (18%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
+V++L K + DK+ + QY SK S G G A+N + S L+RK FR +F+
Sbjct: 10 LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFV 126
L+ L + P L NA + F D WL R G+
Sbjct: 70 TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD------------ 112
Query: 127 SFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLE 186
A L R+S G SV +L + +++
Sbjct: 113 ----------------------AWLARRMSFISAFGESVGYVFFIAMDLIMIRRGLRQER 150
Query: 187 KELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFV 246
K L++ K K+++ + R +A + D+V+ + ++ P G G V
Sbjct: 151 KLLREGGKDKDKEVKKIRMDRVMRLMATAANVADLVIGIADIEPNPFCNHAVTLGISGLV 210
Query: 247 TSLISCYQLLPA 258
++ Y+ P+
Sbjct: 211 SAWAGWYRNWPS 222
>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
++ + S L+RK FRL KFV +++AL P P P + LL + + FL+Q V
Sbjct: 68 KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121
Query: 106 WLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSV 165
WL ++G+ L H P+ LQ+ AELLG +
Sbjct: 122 WLAKAGL------LPAHL--------LPR-------LQRLSAWAELLGYVG--------- 151
Query: 166 CSTLVELGELGRLSTSMKKLEKE--LKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVV 223
S ++L E+G+L +S+K KE ++SD + + + LK+ +++V+ D V+
Sbjct: 152 -SITIKLEEIGKLESSVKMRLKEGCREESDVVRTLRVKLLLKR-----MSVVQDVADAVM 205
Query: 224 AVG 226
A+G
Sbjct: 206 ALG 208
>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
++ + S L+RK FRL KFV +++AL P P P + LL + + FL+Q V
Sbjct: 68 KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121
Query: 106 WLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMGSSV 165
WL ++G+ L H P+ LQ+ AELLG +
Sbjct: 122 WLAKAGL------LPAHL--------LPR-------LQRLSAWAELLGYVG--------- 151
Query: 166 CSTLVELGELGRLSTSMKKLEKE--LKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVV 223
S ++L E+G+L +S+K KE ++SD + + + LK+ +++V+ D V+
Sbjct: 152 -SITIKLEEIGKLESSVKMRLKEGCREESDVVRTLRVKLLLKR-----MSVVQDVADAVM 205
Query: 224 AVG 226
A+G
Sbjct: 206 ALG 208
>sp|Q9FZF1|PX11A_ARATH Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A
PE=1 SV=1
Length = 248
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 17 YLNKAEARDKICRAIQYGSKFL--SDGQPGTA------QNVDKSTSLARKVFRLFKFVND 68
YL+K + DK+ + +Y +K + S P T ++ + S ++RK FRL KFV D
Sbjct: 24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83
Query: 69 LHALISP-VPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVK 116
++AL S L L+++ L + F++Q +WL +SG+ K
Sbjct: 84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAK 129
>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica
GN=PEX11-2 PE=2 SV=1
Length = 254
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 56/220 (25%)
Query: 47 QNVDKSTSLARKVFRLFKFVNDLHAL----ISPVPQGTPLPLVLLGKSKNALLSTFLFLD 102
++ + S L+RK FRL KFV ++AL P P PL LVLL + + FL+
Sbjct: 74 RSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPL-LVLLAYGGQGV---YNFLE 129
Query: 103 QVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWMG 162
Q WL ++G+ + P+R L RI ++ +
Sbjct: 130 QFAWLAKAGLLPARL--------------LPRR----------------LHRIGVWAQLL 159
Query: 163 SSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIV 222
+ V S ++L E+ L + E L++ ++E + +K + ++LV+ +D
Sbjct: 160 AHVGSIAIKLEEVAELECGV---EARLEEGCGEESEVVRTLSRKLLLKLMSLVQDMVDSA 216
Query: 223 VAVGLLQLAPKKVTPR--------VTGAFGFVTSLISCYQ 254
+ VG VT R + + G +++LIS ++
Sbjct: 217 MTVG-------DVTGRKGLLGSSTLMASAGLLSALISVHK 249
>sp|Q9STY0|PX11B_ARATH Peroxisomal membrane protein 11B OS=Arabidopsis thaliana GN=PEX11B
PE=1 SV=1
Length = 227
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 14 VVLYLNKAEARDKICRAIQYGSKF----LSDGQPGTAQNVDK---STSLARKVFRLFKFV 66
+V++L K + DK+ + QY +K + +P A K ++ L+RK FR + +
Sbjct: 9 LVVFLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRKAFRTGRSL 68
Query: 67 NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSG 111
+AL P TP+ + L N+ + F D +WL R G
Sbjct: 69 TGFNAL-RRNPGATPM-IRFLAVLANSGEMVYFFFDHFLWLSRIG 111
>sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=idp1 PE=3 SV=2
Length = 439
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 61 RLFKFVNDL-HALISPVPQGT-PLPLVLLGKSKNALLSTFLFLDQV 104
RL KF N L HA + V +G L LL KS N + TF FLD V
Sbjct: 382 RLVKFANALEHACVRCVEKGIMTKDLYLLSKSPNGYVDTFEFLDAV 427
>sp|A2C536|PANCY_PROM1 Bifunctional pantoate ligase/cytidylate kinase OS=Prochlorococcus
marinus (strain NATL1A) GN=panC/cmk PE=3 SV=1
Length = 516
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 170 VELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDI 221
++L + G +S++ LEKE+K+ DK +E+ A LKK+ + ++ LV M+I
Sbjct: 441 LDLHKRGYEFSSIEDLEKEIKERDKKDSERKIAPLKKAQD-AIELVTDGMNI 491
>sp|Q46IM3|PANCY_PROMT Bifunctional pantoate ligase/cytidylate kinase OS=Prochlorococcus
marinus (strain NATL2A) GN=panC/cmk PE=3 SV=1
Length = 516
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 170 VELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDI 221
++L + G +S++ LEKE+K+ DK +E+ A LKK+ + ++ LV M+I
Sbjct: 441 LDLHKRGYEFSSIEDLEKEIKERDKKDSERKIAPLKKAQD-AIELVTDGMNI 491
>sp|O96011|PX11B_HUMAN Peroxisomal membrane protein 11B OS=Homo sapiens GN=PEX11B PE=1
SV=1
Length = 259
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 20 KAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKFVNDLH 70
+++AR+++CRA QY L + G + + K SL RK+ RL + L
Sbjct: 10 QSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNSADALE 69
Query: 71 ALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ V L + N L + D V+W G+SG+
Sbjct: 70 SAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|Q9Z210|PX11B_MOUSE Peroxisomal membrane protein 11B OS=Mus musculus GN=Pex11b PE=2
SV=1
Length = 259
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Query: 20 KAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKFVNDLH 70
+++AR+++CRA QY L + G + + K SL RK+ RL + L
Sbjct: 10 QSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNSTDALE 69
Query: 71 ALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ V L + N L + D V+W G+SG+
Sbjct: 70 SAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
>sp|Q148K5|PX11B_BOVIN Peroxisomal membrane protein 11B OS=Bos taurus GN=PEX11B PE=2 SV=1
Length = 258
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 15 VLYLNKAEARDKICRAIQYGSKFLSDG--QPGTAQNVDKST-------SLARKVFRLFKF 65
V + +++AR+++CRA QY L + G + + K SL RK+ RL
Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQKHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64
Query: 66 VNDLHALISPVP-QGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGI 112
+ L + V L + N L + D V+W G+SG+
Sbjct: 65 ADALESAKRAVHLSDVVLRFCITVSHLNRAL--YFACDNVLWAGKSGL 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,492,298
Number of Sequences: 539616
Number of extensions: 3334756
Number of successful extensions: 11169
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11133
Number of HSP's gapped (non-prelim): 34
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)