Query 024612
Match_columns 265
No_of_seqs 114 out of 436
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05648 PEX11: Peroxisomal bi 100.0 9.5E-44 2.1E-48 310.3 21.1 213 11-256 1-223 (223)
2 KOG4186 Peroxisomal biogenesis 100.0 3.6E-40 7.9E-45 288.8 20.5 219 11-263 1-233 (233)
3 PRK11677 hypothetical protein; 52.4 1.1E+02 0.0023 25.1 8.0 13 160-172 6-18 (134)
4 PRK10292 hypothetical protein; 41.4 85 0.0018 22.6 5.0 43 211-258 11-54 (69)
5 KOG4186 Peroxisomal biogenesis 39.0 1.5E+02 0.0032 26.7 7.3 52 205-258 172-225 (233)
6 PF10267 Tmemb_cc2: Predicted 28.1 3.1E+02 0.0067 26.6 8.1 49 210-258 346-394 (395)
7 PF06295 DUF1043: Protein of u 22.6 4E+02 0.0088 21.3 7.4 17 201-217 45-61 (128)
8 COG3105 Uncharacterized protei 18.6 5.4E+02 0.012 21.1 8.1 62 155-218 3-71 (138)
9 PF06305 DUF1049: Protein of u 18.4 3.3E+02 0.0072 18.6 5.2 30 159-188 27-56 (68)
10 PF14147 Spore_YhaL: Sporulati 15.3 3.8E+02 0.0083 18.4 4.2 26 159-184 3-28 (52)
No 1
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=100.00 E-value=9.5e-44 Score=310.29 Aligned_cols=213 Identities=33% Similarity=0.458 Sum_probs=182.2
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHcccCC------c---chHhhHHhhhhhhhHHHHhhcchHHHHHhhccCCCCCC
Q 024612 11 LALVVLYLNKAEARDKICRAIQYGSKFLSDGQ------P---GTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTP 81 (265)
Q Consensus 11 l~~~~~~l~t~~GRDKllr~lQY~~kl~~~~~------~---~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~~ 81 (265)
|+++++|+++++||||++|++||++++++|.. + ..++++++++|++||+||+||++++++++.+...++++
T Consensus 1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~ 80 (223)
T PF05648_consen 1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS 80 (223)
T ss_pred CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence 57999999999999999999999999998831 1 24689999999999999999999999999987764444
Q ss_pred hhHHH-HHHhhhhHhHhHhhhhHHHHhhhcCCcccchhhhhhhccccccCCCCCcchhHHHHhhcHHHHHHHHHHHHHHH
Q 024612 82 LPLVL-LGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCW 160 (265)
Q Consensus 82 ~~~~~-l~~~~~~~~~~Y~~~D~v~wl~~~gl~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~s~~fW 160 (265)
+...+ +++++++++++|+++||++|++++|+++.+. .++++++|++||
T Consensus 81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~-------------------------------~~~~~~~s~~~W 129 (223)
T PF05648_consen 81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKS-------------------------------KKKWSRWSNRFW 129 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcH-------------------------------HHHHHHHHHHHH
Confidence 56555 8899999999999999999999999999621 338999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccCCCCccCcchh
Q 024612 161 MGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVT 240 (265)
Q Consensus 161 ~~~lv~~~i~~l~~l~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~v 240 (265)
+++++++++.+++++.++..++++.+++.+++++..++++++.+++++...+++++|+||+++|++++|+ .+++|++|
T Consensus 130 ~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~l~~--~~~~~~~v 207 (223)
T PF05648_consen 130 FASLVLSLVRDLRELRRLRQKERSLKKQLKEKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHWLGW--LKVSDGVV 207 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--eeCChhhH
Confidence 9999999999999998877766555544333333333335577788999999999999999999999977 78999999
Q ss_pred hHHHHHHhHHHHHhhC
Q 024612 241 GAFGFVTSLISCYQLL 256 (265)
Q Consensus 241 g~~G~iSsli~~y~~w 256 (265)
|++|++||++|+|++|
T Consensus 208 g~~G~iSs~i~~~~~W 223 (223)
T PF05648_consen 208 GLLGLISSLIGLYQLW 223 (223)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999999
No 2
>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-40 Score=288.78 Aligned_cols=219 Identities=38% Similarity=0.513 Sum_probs=175.6
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHccc----CCcchH---hhHHhhhhhhhHHHHhhcchHHHHHhhccC--CCCCC
Q 024612 11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----GQPGTA---QNVDKSTSLARKVFRLFKFVNDLHALISPV--PQGTP 81 (265)
Q Consensus 11 l~~~~~~l~t~~GRDKllr~lQY~~kl~~~----~~~~~~---~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~--~~~~~ 81 (265)
+++++.|+++++||||+||.+||+||+++| ++|+.+ +++++++|.+||+||+||++++++++.++. +.+++
T Consensus 1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~~ 80 (233)
T KOG4186|consen 1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLEAGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGTD 80 (233)
T ss_pred CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCCc
Confidence 478999999999999999999999999999 667754 677889999999999999999999999973 44444
Q ss_pred hhHHHHHHhhhhHhHhHhhhhHHHHhhhcCCcccchhhhhhhccccccCCCCCcchhHHHHhhcHHHHHHHHHHHHHHHH
Q 024612 82 LPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKVKTVLYVHFRFVSFFLPFPKRSTTMVLLQQNKERAELLGRISLFCWM 161 (265)
Q Consensus 82 ~~~~~l~~~~~~~~~~Y~~~D~v~wl~~~gl~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~s~~fW~ 161 (265)
.++..+.+++|+.+.+|+++|||.|++++|+++.+ .++|...+...|.
T Consensus 81 ~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~--------------------------------~~~~~~~~~~~w~ 128 (233)
T KOG4186|consen 81 NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVK--------------------------------SERWKISRISLWL 128 (233)
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccc--------------------------------hHHHHHHHHHHHH
Confidence 43444899999999999999999999999999972 2467777777777
Q ss_pred HHHHHHHHHHHHHhhhhhH---HHHHHHHhhhhhhhhhHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhhccCCCCccC
Q 024612 162 GSSVCSTLVELGELGRLST---SMKKLEKELKDSDKHKNEQYQAKLK--KSNERSLALVKSAMDIVVAVGLLQLAPKKVT 236 (265)
Q Consensus 162 ~~lv~~~i~~l~~l~~l~~---~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~ 236 (265)
+++..++..+++++..+++ ..++.+++.+++++...+.+++.+. .++...+....+.||..+|..-++. .+++
T Consensus 129 ~sl~l~~~r~~~~~~~~~r~~~~~k~~~~~~~~~~e~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~ipl~~L~~--~k~~ 206 (233)
T KOG4186|consen 129 LSLGLNLCRDMYEVFELQRLSSSIKKKTKSISSGDEEDREKLQAQQLDQNHRLLLLSADFNAADSALPLGQLGP--GKLN 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccCCCCccHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhhccCc--CcCC
Confidence 7777777776666433332 2233344444344444444444444 3777889999999999999999877 8899
Q ss_pred cchhhHHHHHHhHHHHHhhCCCCcCCC
Q 024612 237 PRVTGAFGFVTSLISCYQLLPAPVKAK 263 (265)
Q Consensus 237 ~~~vg~~G~iSsli~~y~~w~~~~~~~ 263 (265)
|++||++|++||++|+|++|++.+|.|
T Consensus 207 p~~vGl~G~vSSilg~y~~~~~~~~~k 233 (233)
T KOG4186|consen 207 PRQVGLFGLVSSILGMYQLWPPRPKLK 233 (233)
T ss_pred hhHhhHHHHHHHHHHHHHHccccccCC
Confidence 999999999999999999999988764
No 3
>PRK11677 hypothetical protein; Provisional
Probab=52.40 E-value=1.1e+02 Score=25.12 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 024612 160 WMGSSVCSTLVEL 172 (265)
Q Consensus 160 W~~~lv~~~i~~l 172 (265)
|+++++++++.+.
T Consensus 6 a~i~livG~iiG~ 18 (134)
T PRK11677 6 ALIGLVVGIIIGA 18 (134)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 4
>PRK10292 hypothetical protein; Provisional
Probab=41.44 E-value=85 Score=22.59 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCccCcchhhHHHHH-HhHHHHHhhCCC
Q 024612 211 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFV-TSLISCYQLLPA 258 (265)
Q Consensus 211 ~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vg~~G~i-Ssli~~y~~w~~ 258 (265)
+-++++-+.|.++++..+|. .|..+.++|+| +++..-...|..
T Consensus 11 Y~EmCRVVGdvVl~m~~lG~-----e~k~i~Ia~vlrTa~a~~r~~rs~ 54 (69)
T PRK10292 11 YREMCRVVGKVVLEMRDLGQ-----EPKHIVIAGVLRTALANKRIQRSE 54 (69)
T ss_pred HHHHHHHHHHHHHHHHHcCC-----CcchhhHHHHHHHHHHhcccccCH
Confidence 44788899999999999977 67788999999 777777777654
No 5
>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.96 E-value=1.5e+02 Score=26.68 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhccCCCCccCcc--hhhHHHHHHhHHHHHhhCCC
Q 024612 205 KKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPR--VTGAFGFVTSLISCYQLLPA 258 (265)
Q Consensus 205 ~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~--~vg~~G~iSsli~~y~~w~~ 258 (265)
++..+.-...+-...|..-+.+.+|. ..+.++ .-+..|+..-+-++-..|+-
T Consensus 172 ~~~~~~~~~~l~l~~~~~~~~~~ipl--~~L~~~k~~p~~vGl~G~vSSilg~y~~ 225 (233)
T KOG4186|consen 172 AQQLDQNHRLLLLSADFNAADSALPL--GQLGPGKLNPRQVGLFGLVSSILGMYQL 225 (233)
T ss_pred HHHHHccchHHHHHHHHHHHHHhhhh--hccCcCcCChhHhhHHHHHHHHHHHHHH
Confidence 33344467788889999999999999 556665 66788888877777766654
No 6
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.15 E-value=3.1e+02 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccCcchhhHHHHHHhHHHHHhhCCC
Q 024612 210 RSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA 258 (265)
Q Consensus 210 ~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vg~~G~iSsli~~y~~w~~ 258 (265)
.++.++.-++=++.++...+.+..+-..++..++.++-.++-+++.|+.
T Consensus 346 llL~l~~vlLv~vSt~~~~~~Pl~~tR~r~~~t~~~v~l~~~~~~~w~~ 394 (395)
T PF10267_consen 346 LLLTLLTVLLVFVSTVANCPLPLTRTRLRTLTTLLLVGLGAILWQNWDA 394 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHhhccHHHHHHHHHHHHHHHHHhccCC
Confidence 3455555555555555555443333445688888899999999999975
No 7
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.57 E-value=4e+02 Score=21.26 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=7.1
Q ss_pred HHHHhhhhHHHHHHHHH
Q 024612 201 QAKLKKSNERSLALVKS 217 (265)
Q Consensus 201 ~~~~~~~~~~~l~lv~~ 217 (265)
+.....|++.--+++.+
T Consensus 45 k~~V~~HF~~ta~Ll~~ 61 (128)
T PF06295_consen 45 KQEVNDHFAQTAELLDN 61 (128)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555443333333
No 8
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=18.60 E-value=5.4e+02 Score=21.14 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=26.8
Q ss_pred HHHHHHHHH---HHHHHHHHHHHhhhhhH----HHHHHHHhhhhhhhhhHHHHHHHHhhhhHHHHHHHHHH
Q 024612 155 ISLFCWMGS---SVCSTLVELGELGRLST----SMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSA 218 (265)
Q Consensus 155 ~s~~fW~~~---lv~~~i~~l~~l~~l~~----~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~lv~~~ 218 (265)
|+...|.++ +|.+++.+... .|+-. ...+++.|.++.... -++++....+|++..-++++++
T Consensus 3 wt~~~W~~a~igLvvGi~IG~li-~Rlt~~~~k~q~~~q~ELe~~K~~-ld~~rqel~~HFa~sAeLlktl 71 (138)
T COG3105 3 WTFMTWEYALIGLVVGIIIGALI-ARLTNRKLKQQQKLQYELEKVKAQ-LDEYRQELVKHFARSAELLKTL 71 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHcchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456667764 45555544332 23311 112344444322211 1223444556666544444443
No 9
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=18.43 E-value=3.3e+02 Score=18.61 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 024612 159 CWMGSSVCSTLVELGELGRLSTSMKKLEKE 188 (265)
Q Consensus 159 fW~~~lv~~~i~~l~~l~~l~~~~~~~~~~ 188 (265)
+-+.|.+++.+..+....+.+.+.++++++
T Consensus 27 ~f~~G~llg~l~~~~~~~~~r~~~~~~~k~ 56 (68)
T PF06305_consen 27 AFLLGALLGWLLSLPSRLRLRRRIRRLRKE 56 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444444443
No 10
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=15.27 E-value=3.8e+02 Score=18.38 Aligned_cols=26 Identities=4% Similarity=0.045 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHH
Q 024612 159 CWMGSSVCSTLVELGELGRLSTSMKK 184 (265)
Q Consensus 159 fW~~~lv~~~i~~l~~l~~l~~~~~~ 184 (265)
.|.+..+.+++.+.+...+...++++
T Consensus 3 wWvY~vi~gI~~S~ym~v~t~~eE~~ 28 (52)
T PF14147_consen 3 WWVYFVIAGIIFSGYMAVKTAKEERE 28 (52)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48887788887776655454443333
Done!