Query 024612
Match_columns 265
No_of_seqs 114 out of 436
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 11:18:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024612.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024612hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1be3k_ f.23.15.1 (K:) Subunit 17.4 24 0.0018 18.0 1.1 11 238-248 11-21 (26)
2 d1kbha_ a.153.1.1 (A:) Nuclear 7.6 1.8E+02 0.013 16.9 3.0 24 8-31 7-32 (47)
3 d1h6pa_ a.146.1.1 (A:) TRF2 {H 5.9 1.1E+02 0.0078 23.7 1.7 35 7-41 37-72 (203)
4 d2gnoa1 a.80.1.1 (A:209-306) g 5.5 3.8E+02 0.028 17.2 4.2 32 9-41 23-54 (98)
5 d1mkma1 a.4.5.33 (A:1-75) Tran 4.7 2.1E+02 0.015 17.6 2.4 47 24-73 4-51 (75)
6 d1jt6a2 a.121.1.1 (A:73-187) M 4.1 5.4E+02 0.039 17.0 6.5 49 205-259 45-93 (115)
7 d1jeoa_ c.80.1.3 (A:) Probable 3.9 2.3E+02 0.017 20.2 2.4 68 1-71 1-71 (177)
8 d2jdid1 a.69.1.1 (D:358-475) F 3.4 1.6E+02 0.012 20.7 0.8 55 51-105 9-68 (118)
9 d1skye1 a.69.1.1 (E:357-470) F 3.3 3.9E+02 0.028 18.4 2.9 57 51-107 6-67 (114)
10 d1bu2a2 a.74.1.1 (A:149-250) V 3.3 3.4E+02 0.024 17.6 2.4 19 233-251 43-61 (102)
No 1
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.38 E-value=24 Score=17.95 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=7.6
Q ss_pred chhhHHHHHHh
Q 024612 238 RVTGAFGFVTS 248 (265)
Q Consensus 238 ~~vg~~G~iSs 248 (265)
|.||..|++|+
T Consensus 11 gavgavglvsa 21 (26)
T d1be3k_ 11 GAVGAVGLVSA 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcceeEEee
Confidence 45777777775
No 2
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.59 E-value=1.8e+02 Score=16.91 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcccc--hHHHHHHHH
Q 024612 8 RAELALVVLYLNKAE--ARDKICRAI 31 (265)
Q Consensus 8 ~~~l~~~~~~l~t~~--GRDKllr~l 31 (265)
..-++++..+|+.++ |.+-+=|.+
T Consensus 7 ~aLldQL~s~L~~~D~~~LeEiDrAL 32 (47)
T d1kbha_ 7 RALLDQLHTLLSNTDATGLEEIDRAL 32 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHh
Confidence 457899999999777 776666654
No 3
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.93 E-value=1.1e+02 Score=23.73 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHHHHHHcccC
Q 024612 7 TRAELAL-VVLYLNKAEARDKICRAIQYGSKFLSDG 41 (265)
Q Consensus 7 ~~~~l~~-~~~~l~t~~GRDKllr~lQY~~kl~~~~ 41 (265)
.++.+.- ++..++....-+|.+|++|+.+|+-.+-
T Consensus 37 ~rdi~eall~~~~~~~~~~~kti~i~QfL~RI~eG~ 72 (203)
T d1h6pa_ 37 IRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGE 72 (203)
T ss_dssp HHHHHHHHTTSCCC----CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCccccccchhhHHHHHHHHHHHHcCC
Confidence 3555665 4477888888999999999999998774
No 4
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=5.51 E-value=3.8e+02 Score=17.22 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHcccC
Q 024612 9 AELALVVLYLNKAEARDKICRAIQYGSKFLSDG 41 (265)
Q Consensus 9 ~~l~~~~~~l~t~~GRDKllr~lQY~~kl~~~~ 41 (265)
.+.+-|-...+|..|||-.+ ++|-..+++...
T Consensus 23 ~ff~lfdqv~ntitg~dafl-liq~~~riilhe 54 (98)
T d2gnoa1 23 EFFALFDQVTNTITGKDAFL-LIQRLTRIILHE 54 (98)
T ss_dssp GHHHHHHHHHHHSCTHHHHH-HHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhcccchHHH-HHHHHHHHhccc
Confidence 35666777889999999866 788888888653
No 5
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.74 E-value=2.1e+02 Score=17.59 Aligned_cols=47 Identities=4% Similarity=0.120 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHcccCCcchHhhHHhhhhhhh-HHHHhhcchHHHHHhh
Q 024612 24 RDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLAR-KVFRLFKFVNDLHALI 73 (265)
Q Consensus 24 RDKllr~lQY~~kl~~~~~~~~~~~l~~~ls~aR-k~~Rl~k~l~~~~~~~ 73 (265)
-||.++++.+.+.- ..|-....+...++..| .+.|+.+.+.....+.
T Consensus 4 l~r~l~IL~~~a~~---~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~ 51 (75)
T d1mkma1 4 LKKAFEILDFIVKN---PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 51 (75)
T ss_dssp HHHHHHHHHHHHHC---SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhC---CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46677777766532 22334556666666655 3455555555544443
No 6
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=4.09 E-value=5.4e+02 Score=16.99 Aligned_cols=49 Identities=4% Similarity=-0.126 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhccCCCCccCcchhhHHHHHHhHHHHHhhCCCC
Q 024612 205 KKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAP 259 (265)
Q Consensus 205 ~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vg~~G~iSsli~~y~~w~~~ 259 (265)
.+.+....++++.+.+=-+..+. .+..+.-+....+++++-|++. |-.+
T Consensus 45 ~~lr~~y~~~~~~Ii~eGi~~G~-----f~~~d~~~~~~~il~~lng~~~-Wy~~ 93 (115)
T d1jt6a2 45 NKLENKYIDAYHVIFKEGNLNGE-----WSINDVNAVSKIAANAVNGIVT-FTHE 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS-----CCCSCHHHHHHHHHHHHHHHHH-SCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCc-----eeccCHHHHHHHHHHHHHHHHH-Hhcc
Confidence 34445555555555554444322 4445666778888888888885 6543
No 7
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.90 E-value=2.3e+02 Score=20.18 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=42.2
Q ss_pred CcchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH---HcccCCcchHhhHHhhhhhhhHHHHhhcchHHHHH
Q 024612 1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSK---FLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHA 71 (265)
Q Consensus 1 ~~~~~~~~~~l~~~~~~l~t~~GRDKllr~lQY~~k---l~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~~~~ 71 (265)
|++||-..+.+..+.+++...+..|++=++++...+ ++..+. +....+.. ..++++.|+|.+...++.
T Consensus 1 ~~~~d~~~~~i~~l~~~~~~~~~~~~i~~~~~~i~~a~~I~~~G~-G~S~~~a~--~~~~~l~~lg~~~~~~~~ 71 (177)
T d1jeoa_ 1 LEELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGV-GRSGYIGR--CFAMRLMHLGFKSYFVGE 71 (177)
T ss_dssp CHHHHHHHHHHHGGGHHHHCHHHHHHHHHHHHHHHHCSSEEEECC-HHHHHHHH--HHHHHHHHTTCCEEETTS
T ss_pred CchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHCCCeEEEEEc-cHHHHHHH--HHHHHHHhcCCccccccc
Confidence 788899988888888888888877777666665432 111111 11111111 236788899877655443
No 8
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.43 E-value=1.6e+02 Score=20.70 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=39.5
Q ss_pred hhhhhhhHHHHhhcchHHHHHhhccCCCCC---Ch--hHHHHHHhhhhHhHhHhhhhHHH
Q 024612 51 KSTSLARKVFRLFKFVNDLHALISPVPQGT---PL--PLVLLGKSKNALLSTFLFLDQVV 105 (265)
Q Consensus 51 ~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~---~~--~~~~l~~~~~~~~~~Y~~~D~v~ 105 (265)
.+...+|++-+++.--..++.++..++-.+ .+ ...+...+.+.+..-|+..|.++
T Consensus 9 ~Hy~~a~~V~~~LqrYkeLqdIIaiLG~dELSeeDk~~V~RARklqrfLsQpFfvae~fT 68 (118)
T d2jdid1 9 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFT 68 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHHCCCCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcChhhcCHHHhHHHHHHHHHHHHhcCcceeeeeec
Confidence 466778888888888888888887666332 22 23447777888888899988875
No 9
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=3.32 E-value=3.9e+02 Score=18.39 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=40.3
Q ss_pred hhhhhhhHHHHhhcchHHHHHhhccCCCCC---Chh--HHHHHHhhhhHhHhHhhhhHHHHh
Q 024612 51 KSTSLARKVFRLFKFVNDLHALISPVPQGT---PLP--LVLLGKSKNALLSTFLFLDQVVWL 107 (265)
Q Consensus 51 ~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~---~~~--~~~l~~~~~~~~~~Y~~~D~v~wl 107 (265)
.+...+|++-+++.--.+++.++..++-.+ .+. ..+...+.+.+..-|+..|.++-.
T Consensus 6 ~Hy~~a~~v~~~LqrYkeLqDIIaiLG~dELSeeDk~~V~RARklqrFLsQpF~vaE~fTG~ 67 (114)
T d1skye1 6 EHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQ 67 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcCHHHHHHHHHHHHHHHHhcCCceeceeecCC
Confidence 456677888888877778888877666332 232 344777788888889999988743
No 10
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=3.28 E-value=3.4e+02 Score=17.64 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.6
Q ss_pred CccCcchhhHHHHHHhHHH
Q 024612 233 KKVTPRVTGAFGFVTSLIS 251 (265)
Q Consensus 233 ~~~~~~~vg~~G~iSsli~ 251 (265)
.-++|+.+...|+++.+=.
T Consensus 43 all~p~licaggllttiet 61 (102)
T d1bu2a2 43 ALLSPGLICAGGLLTTIET 61 (102)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred cccCcceeecccceEEEee
Confidence 4489999999999988743
Done!