BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024613
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/247 (79%), Positives = 212/247 (85%), Gaps = 3/247 (1%)
Query: 19 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDG 78
QK+ S +G +KA F + + RS S A+P+RPLWFPGSTPP WLDG
Sbjct: 21 QKNGSPSGTSKA-FLGRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLDG 79
Query: 79 SLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 138
SLPGDFGFDPLGLGSDPE+LRWNVQ+E+VH RWAMLGAAGIFIPE LTKLGILNTPSWYT
Sbjct: 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT 139
Query: 139 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGL 198
AGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVGYPGGL
Sbjct: 140 AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 199 WFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI-AHLADPG 257
WFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADP
Sbjct: 200 WFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP- 258
Query: 258 HATVFAV 264
HAT+FA
Sbjct: 259 HATIFAA 265
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/186 (91%), Positives = 179/186 (96%)
Query: 73 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132
PEWLDGSLPGDFGFDPLGL SDPE+LRWNVQ+E+VH RWAMLGAAGIFIPE LTKLGILN
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 133 TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDV 192
TPSWYTAGE EYFTDTTTLFIVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDV
Sbjct: 61 TPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDV 120
Query: 193 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 252
GYPGGLWFDPLGWGS SP+K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AH
Sbjct: 121 GYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAH 180
Query: 253 LADPGH 258
LADPGH
Sbjct: 181 LADPGH 186
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 333 bits (854), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 165/171 (96%)
Query: 93 SDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLF 152
SDPE+LRWNVQ+E+VH RWAMLGAAGIFIPE LTKLGILNTPSWYTAGE EYFTDTTTLF
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLF 60
Query: 153 IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 212
IVE++FIGWAEGRRWADI+ PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS SP+K
Sbjct: 61 IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQK 120
Query: 213 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 263
+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FA
Sbjct: 121 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 171
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 77 DGSLPGDFGFDPLGLGS-DPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNT 133
D PG FDPLG GS P+ L+ EI + R AML G + + T G ++
Sbjct: 99 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 156
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 138/215 (64%), Gaps = 10/215 (4%)
Query: 50 RSVSVSAAAA---DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEI 106
R V S +A+ + + W PG P +L GSLPGD GFDPLGL DPE LRW VQ+E+
Sbjct: 37 RPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAEL 96
Query: 107 VHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRR 166
V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF ++TLF++E I + E RR
Sbjct: 97 VNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR 156
Query: 167 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 226
W DI PG VN DPIF L +VGYPGG+ F+PL + E + KEI NGRL
Sbjct: 157 WQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TLEAKEKEIANGRL 210
Query: 227 AMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
MLA +G QH TG GP DNL+ H++DP H T+
Sbjct: 211 -MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 244
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 111/167 (66%), Gaps = 6/167 (3%)
Query: 95 PETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIV 154
PE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF ++TLF++
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVI 60
Query: 155 EMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVK 214
E I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 61 EFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP-----TL 114
Query: 215 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
E + KEI NGRLAMLA +G QH TG GP DNL+ H++DP H T+
Sbjct: 115 EAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 161
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 112/171 (65%), Gaps = 7/171 (4%)
Query: 91 LGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTT 150
L DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF ++T
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSST 60
Query: 151 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 210
LF++E I + E RRW DI PG VN DPIF L +VGYPGG+ F+PL +
Sbjct: 61 LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP--- 116
Query: 211 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
E + KEI NGRL MLA +G QH TG GP DNL+ H++DP H T+
Sbjct: 117 --TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 164
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 135/234 (57%), Gaps = 24/234 (10%)
Query: 51 SVSVSAAAADP-----NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------R 99
S V AAA P +RPLWF +LDGSLPGD+GFDPLGL SDPE +
Sbjct: 39 SFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPK 97
Query: 100 WNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTT 150
W EI++ R+AMLGA G PE+L K G++ + W+ AG Y+ D+ T
Sbjct: 98 WLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYT 157
Query: 151 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSG 208
LF+ EM +G+AE RR+ D KPG + K G + YPGG +F+PLG+G
Sbjct: 158 LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKD 217
Query: 209 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 262
+ +K+L+ KE+KNGRLAMLA++G + Q + TG GP NL+ HL DP H +
Sbjct: 218 E-KSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNIL 270
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 125
W PG P +LDGS PGDFGFDPLGLG P L +SE++HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 126 TKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 177
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 178 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 237
DP YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 238 H-IYTGTGPIDNLIAHLADPGHATV 261
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 109/204 (53%), Gaps = 28/204 (13%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
PG P +LDGS PGDFGFDPLGLG P L +SE++HCRWAML GI +PE L
Sbjct: 1 MPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
Query: 127 KLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNT 178
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 61 YGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEK 112
Query: 179 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH 238
DP YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 113 DP---------EKKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQ 161
Query: 239 -IYTGTGPIDNLIAHLADPGHATV 261
Y GTGP++NL HLADP H +
Sbjct: 162 SAYPGTGPLENLATHLADPWHNNI 185
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 122/231 (52%), Gaps = 37/231 (16%)
Query: 46 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWN 101
TAG ++V S+ P+R + F G +P +L G PGD+G+D GL +DPET N
Sbjct: 3 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKN 61
Query: 102 VQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT---- 149
+ E++HCRWAMLGA G PELL + G+ W+ AG L+Y + +
Sbjct: 62 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHA 121
Query: 150 ----TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 205
++ ++I +G EG R A P DP+ YPGG FDPLG
Sbjct: 122 QSILAIWACQVILMGAVEGYRIAG--GPLGEVVDPL------------YPGGS-FDPLGL 166
Query: 206 GSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 256
PE EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 167 AD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 107/200 (53%), Gaps = 32/200 (16%)
Query: 73 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-L 131
P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 92
Query: 132 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 176
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 150
Query: 177 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 236
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 151 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 196
Query: 237 QHIYTGTGPIDNLIAHLADP 256
Q I TG GP++NL HLADP
Sbjct: 197 QAIVTGKGPLENLADHLADP 216
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 107/200 (53%), Gaps = 32/200 (16%)
Query: 73 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-L 131
P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+
Sbjct: 33 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF 92
Query: 132 NTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCV 176
W+ AG L+Y + + ++ ++I +G EG R A P
Sbjct: 93 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGE 150
Query: 177 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 236
DP+ YPGG FDPLG PE EL+ KE+KNGRLAM ++ G +
Sbjct: 151 VVDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 196
Query: 237 QHIYTGTGPIDNLIAHLADP 256
Q I TG GP++NL HLADP
Sbjct: 197 QAIVTGKGPLENLADHLADP 216
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 101/189 (53%), Gaps = 28/189 (14%)
Query: 79 SLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 138
S PGDFGFDPLGLG P L +SE++HCRWAML GI +PE L + W
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 139 --AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 190
G+ Y + T+ +E + I + E +R + DP
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDP---------E 103
Query: 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNL 249
YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q Y GTGP++NL
Sbjct: 104 KKKYPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 161
Query: 250 IAHLADPGH 258
HLADP H
Sbjct: 162 ATHLADPWH 170
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 99/166 (59%), Gaps = 12/166 (7%)
Query: 100 WNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTT 150
W EI++ R+AMLGAAG PE+L K G++ + W+ AG Y+ D T
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYT 60
Query: 151 LFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSG 208
LF++EM +G+AE RR D PG + K L G+ + YPGG +F+PLG+G
Sbjct: 61 LFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK- 119
Query: 209 SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLA 254
+ +KEL+ KE+KNGRLAMLA++G + Q + TG GP NL+ HLA
Sbjct: 120 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 79 SLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLG 129
+ PG F+PLG G D ++L+ E+ + R AML G FI L+T +G
Sbjct: 105 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 155
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 99/173 (57%), Gaps = 13/173 (7%)
Query: 87 DPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT----- 138
DP G G E RW E+++ R+AMLGA G PE L K+G++ +W+
Sbjct: 2 DPEGTGGFIEP-RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 60
Query: 139 -AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYP 195
AG Y+ D TLF++EM +G+AE RR+ D KPG + K G + YP
Sbjct: 61 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYP 120
Query: 196 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 248
GG +F+PLG+G + +KEL+ KE+KNGRLAMLA++G + Q + TG GP N
Sbjct: 121 GGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
F GS P + PG F+PLG G D ++L+ E+ + R AML G FI L+T
Sbjct: 111 FGGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVT 165
Query: 127 KLG 129
+G
Sbjct: 166 GVG 168
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 114/255 (44%), Gaps = 79/255 (30%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV------------------- 102
+RPLW+PG+ PE+LDGSL GD+GFDP GLG E L+++
Sbjct: 10 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTR 69
Query: 103 ------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 138
+ E++H RWAML G E LT + +W
Sbjct: 70 TESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQD 123
Query: 139 AGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL 187
AG++E + TTL +E++ IG+ E +R N +L
Sbjct: 124 AGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR-----------------NAEL 166
Query: 188 TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 247
YPGG FDPLG S PEK L+ EIK+ RLAM+ +G Q TG GP++
Sbjct: 167 DTEKRLYPGGT-FDPLGLAS-DPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLN 224
Query: 248 NLIAHLADPGHATVF 262
N + HL+DP H T+
Sbjct: 225 NWVTHLSDPLHTTIL 239
>pdb|2E11|A Chain A, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|B Chain B, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|C Chain C, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|D Chain D, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
Length = 266
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 107 VHCRWAMLGAAGIFIPELLTKLGILNTPSWYT-AGELEYFTDTTTLFIVEMIFIGWAEGR 165
+ + A LGAA +L T+ G+ N W T G L+Y+ D LF + +A GR
Sbjct: 68 IRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDGALQYY-DKRHLFRFGNEHLRYAAGR 126
Query: 166 RWADI------IKPG-CVNTD-PIFPNNKLTGTDVGYPGGLWFD 201
+ I P C + P+F N+ DV PG L FD
Sbjct: 127 ERLCVEWKGWRINPQVCYDLRFPVFCRNRF---DVERPGQLDFD 167
>pdb|2VXK|A Chain A, Structural Comparison Between Aspergillus Fumigatus And
Human Gna1
pdb|2VEZ|A Chain A, Afgna1 Crystal Structure Complexed With Acetyl-Coa And
Glucose-6p Gives New Insights Into Catalysis
Length = 190
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPL 89
SV A AD N PL+ P P+ L LP D+ PL
Sbjct: 18 SVDAPTADENTPLFSPSLISPDVL-AVLPADYTIRPL 53
>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
Aerococcus Viridans
pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
Viridans Containing Fad
Length = 590
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 108 HCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG 140
H A+LG A + I E+L K+ + +W+TA
Sbjct: 310 HADVAILGDAALAIDEILNKVDAVEESAWWTAN 342
>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
And Tpp, From Aerococcus Viridans
pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
Pyruvate Oxidase Containing Fad And Tpp, And Substrate
Pyruvate
Length = 589
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 108 HCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG 140
H A+LG A + I E+L K+ + +W+TA
Sbjct: 309 HADVAILGDAALAIDEILNKVDAVEESAWWTAN 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,282,391
Number of Sequences: 62578
Number of extensions: 389255
Number of successful extensions: 841
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 32
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)