BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024616
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9YBJ4|PYRG_AERPE CTP synthase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
           JCM 9820 / NBRC 100138 / K1) GN=pyrG PE=3 SV=1
          Length = 538

 Score = 35.0 bits (79), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 92  SKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQ-GSHVASLEGLPFLDGS 150
           SKE + D +  QT+  IP  ++ +++     G ++   V+I + G  V  +EGLPFL+ +
Sbjct: 102 SKERSGD-YLGQTVQVIPHITDEIKSRIKEVGDVSGADVVIVEIGGTVGDIEGLPFLEAA 160

Query: 151 TEVTFD 156
            ++  +
Sbjct: 161 RQMRLE 166


>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
           ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
           Y-1140 / WM37) GN=DBP3 PE=3 SV=1
          Length = 504

 Score = 33.9 bits (76), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 204 LDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAV 258
           LD+  V+F+  I +E+       P+  + W  +LA   V G    GSG+ ++F V
Sbjct: 94  LDFSQVSFIDQIQKEISKFPKPTPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGV 148


>sp|Q1WV30|PYRG_LACS1 CTP synthase OS=Lactobacillus salivarius (strain UCC118) GN=pyrG
           PE=3 SV=1
          Length = 532

 Score = 32.0 bits (71), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 93  KESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQ-GSHVASLEGLPFLD 148
           K+    ++   T+  IP  +N+++   +  G IT   V+I + G  V  +E LPFL+
Sbjct: 100 KKERRGDYLGATVQVIPHITNMIKEKIMRAGTITDADVVITEVGGTVGDIESLPFLE 156


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,903,357
Number of Sequences: 539616
Number of extensions: 3485774
Number of successful extensions: 9803
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9795
Number of HSP's gapped (non-prelim): 14
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)