Query 024616
Match_columns 265
No_of_seqs 187 out of 1032
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b1v_M Phosphatase and actin r 8.1 76 0.0026 19.8 -0.1 11 216-226 18-28 (32)
2 1rh5_B Preprotein translocase 7.5 3.8E+02 0.013 19.5 3.4 24 107-130 27-50 (74)
3 2ww9_B Protein transport prote 7.0 3.8E+02 0.013 19.9 3.3 25 106-130 39-63 (80)
4 3sjd_D Golgi to ER traffic pro 6.9 1.7E+02 0.0059 19.7 1.2 21 56-76 16-36 (46)
5 3mp7_B Preprotein translocase 5.8 3.8E+02 0.013 18.7 2.6 24 107-130 23-46 (61)
6 3bej_E Nuclear receptor coacti 5.7 70 0.0024 19.1 -1.2 10 36-45 8-17 (26)
7 4grv_A Neurotensin receptor ty 5.5 2.4E+02 0.0084 25.8 1.9 9 236-244 161-169 (510)
8 1y7w_A Halotolerant alpha-type 5.1 99 0.0034 27.6 -1.1 15 13-27 123-137 (291)
9 2xgj_A ATP-dependent RNA helic 5.0 2.3E+02 0.0079 29.6 1.4 26 217-243 857-882 (1010)
10 2pv4_A Uncharacterized protein 4.7 2.2E+02 0.0077 23.4 0.9 14 56-69 120-133 (145)
No 1
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=8.12 E-value=76 Score=19.77 Aligned_cols=11 Identities=55% Similarity=0.721 Sum_probs=8.7
Q ss_pred hhhHhhHHhhh
Q 024616 216 SEELLFRGALL 226 (265)
Q Consensus 216 ~EELLFRGvLl 226 (265)
-|||+=||++.
T Consensus 18 reelikrgvlk 28 (32)
T 4b1v_M 18 REELIKRGVLK 28 (32)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHhhhhh
Confidence 48888888874
No 2
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=7.46 E-value=3.8e+02 Score=19.50 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=20.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 024616 107 TIPSRSNVLQACTVTCGLITALGV 130 (265)
Q Consensus 107 ~~~~R~~vL~a~~lT~iLLLiia~ 130 (265)
..|.|++....+-.|.+.++++|.
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~ 50 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGI 50 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999988888887
No 3
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=6.99 E-value=3.8e+02 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=21.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHH
Q 024616 106 VTIPSRSNVLQACTVTCGLITALGV 130 (265)
Q Consensus 106 ~~~~~R~~vL~a~~lT~iLLLiia~ 130 (265)
-..|.|++....+-.|.+.++++|.
T Consensus 39 ~~KPdr~Ef~~iak~t~iG~~imG~ 63 (80)
T 2ww9_B 39 CKKPDLKEYTKIVKAVGIGFIAVGI 63 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999988887
No 4
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=6.88 E-value=1.7e+02 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHhhhhhccCC
Q 024616 56 KKSVKKLKRDRQLRLAEKGNG 76 (265)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~ 76 (265)
..-..++|||+++.|-.+++|
T Consensus 16 a~EkaRLrRERR~aKi~~G~a 36 (46)
T 3sjd_D 16 EAEKRRLLRERRQKKFSNGGA 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHccch
Confidence 345678899988877655543
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.76 E-value=3.8e+02 Score=18.68 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 024616 107 TIPSRSNVLQACTVTCGLITALGV 130 (265)
Q Consensus 107 ~~~~R~~vL~a~~lT~iLLLiia~ 130 (265)
..|.|++....+-.|.+.++++|.
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~ 46 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGL 46 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888877
No 6
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=5.65 E-value=70 Score=19.09 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=5.6
Q ss_pred cccccccccc
Q 024616 36 LHNAGKSHNV 45 (265)
Q Consensus 36 ~~~~~~~~~~ 45 (265)
|.+++||+|.
T Consensus 8 L~EkHkILHr 17 (26)
T 3bej_E 8 LTERHKILHR 17 (26)
T ss_pred HHHHHHHHHH
Confidence 5556666553
No 7
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=5.54 E-value=2.4e+02 Score=25.84 Aligned_cols=9 Identities=0% Similarity=0.272 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 024616 236 VLAVATVFG 244 (265)
Q Consensus 236 IivSSlIFG 244 (265)
+|+-|++++
T Consensus 161 ~W~~s~~~~ 169 (510)
T 4grv_A 161 IWLASALLA 169 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 8
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant protein, algal Ca anhydrase, salt tolerant protein, zinc enzyme; 1.86A {Dunaliella salina}
Probab=5.11 E-value=99 Score=27.62 Aligned_cols=15 Identities=13% Similarity=-0.130 Sum_probs=13.1
Q ss_pred eeeccCCCCCCCChh
Q 024616 13 TYRASNRHPLCPDSA 27 (265)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (265)
+|+....|+||++|.
T Consensus 123 ~Y~l~Q~HfHw~gSE 137 (291)
T 1y7w_A 123 SFVPIQFHFHHFLSE 137 (291)
T ss_dssp EEEEEEEEEEESSCS
T ss_pred eEEEEEEEEccCCcc
Confidence 799999999997665
No 9
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=4.98 E-value=2.3e+02 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=19.4
Q ss_pred hhHhhHHhhhhhhcchhHHHHHHHHHH
Q 024616 217 EELLFRGALLPLFGMDWRSVLAVATVF 243 (265)
Q Consensus 217 EELLFRGvLl~~fg~~w~aIivSSlIF 243 (265)
=|+||+|++- -+.+.-.+.++|+++|
T Consensus 857 ~e~~~~g~~~-~l~p~~~aa~~s~~v~ 882 (1010)
T 2xgj_A 857 TELIFNGNFN-ELKPEQAAALLSCFAF 882 (1010)
T ss_dssp HHHHHHTTTT-TCCHHHHHHHHHHHHC
T ss_pred HHHHHcCccC-CCCHHHHHHHHeeeEe
Confidence 3788888854 4555578889999997
No 10
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=4.72 E-value=2.2e+02 Score=23.39 Aligned_cols=14 Identities=64% Similarity=0.748 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHhh
Q 024616 56 KKSVKKLKRDRQLR 69 (265)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (265)
|-++||+||-|+.|
T Consensus 120 Ke~vKkLKKARtdr 133 (145)
T 2pv4_A 120 KESVKKLKKARTDR 133 (145)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCH
Confidence 34778887777654
Done!