Query 024616
Match_columns 265
No_of_seqs 187 out of 1032
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 11:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024616.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024616hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 9.5 1.3E+02 0.0094 19.4 3.3 24 107-130 16-39 (56)
2 d2ct1a1 g.37.1.1 (A:44-71) Tra 5.7 60 0.0044 18.2 0.0 11 7-17 6-16 (28)
3 d1knya1 a.24.16.1 (A:126-253) 5.6 66 0.0048 24.2 0.2 13 28-40 46-58 (128)
4 d2pv4a1 a.286.1.1 (A:1-144) Un 4.7 1.1E+02 0.0078 23.4 0.9 14 56-69 119-132 (144)
5 d2d8ra1 g.39.1.16 (A:8-93) THA 4.6 84 0.0061 20.8 0.1 26 5-30 6-32 (86)
6 d1oqva_ d.24.1.2 (A:) Toxin-co 4.3 87 0.0063 24.5 0.1 51 11-61 20-78 (171)
7 d1r5sa_ f.50.1.1 (A:) Gap junc 4.3 1.8E+02 0.013 21.2 1.9 26 17-42 78-106 (132)
8 d1kf6b2 d.15.4.2 (B:1-105) Fum 3.3 1.4E+02 0.01 21.1 0.4 24 8-32 47-70 (105)
9 d1kopa_ b.74.1.1 (A:) Carbonic 3.3 90 0.0066 24.3 -0.8 15 12-26 81-95 (223)
10 d1wm7a_ g.3.7.2 (A:) Neurotoxi 3.0 1.3E+02 0.0096 16.7 0.0 11 7-17 8-18 (29)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.54 E-value=1.3e+02 Score=19.41 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 024616 107 TIPSRSNVLQACTVTCGLITALGV 130 (265)
Q Consensus 107 ~~~~R~~vL~a~~lT~iLLLiia~ 130 (265)
..|+|++.....-.|.+.++++|.
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999888887
No 2
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.69 E-value=60 Score=18.15 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=8.7
Q ss_pred ccccceeeecc
Q 024616 7 NHCSTITYRAS 17 (265)
Q Consensus 7 ~~~~~~~~~~~ 17 (265)
.||.||.-|-|
T Consensus 6 phc~tiiarks 16 (28)
T d2ct1a1 6 PHCDTVIARKS 16 (28)
T ss_dssp SSSSCEESSHH
T ss_pred Ccchhheeehh
Confidence 58999987765
No 3
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=5.61 E-value=66 Score=24.18 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=10.8
Q ss_pred hhhhhhhhccccc
Q 024616 28 SMRAKFIGLHNAG 40 (265)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (265)
..++.+|||||+-
T Consensus 46 ~~gAmligLhNr~ 58 (128)
T d1knya1 46 MAGAMLIGLHHRI 58 (128)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhh
Confidence 6789999999863
No 4
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=4.65 E-value=1.1e+02 Score=23.38 Aligned_cols=14 Identities=64% Similarity=0.748 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHhh
Q 024616 56 KKSVKKLKRDRQLR 69 (265)
Q Consensus 56 ~~~~~~~~~~~~~~ 69 (265)
|-++||+||-|+.|
T Consensus 119 Kd~~KqLKKAR~D~ 132 (144)
T d2pv4a1 119 KESVKKLKKARTDR 132 (144)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHccCH
Confidence 44677777766554
No 5
>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.56 E-value=84 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=14.1
Q ss_pred ccccccceeeeccCCCC-CCCChhhhh
Q 024616 5 AINHCSTITYRASNRHP-LCPDSASMR 30 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 30 (265)
++.-|.+-..+..++++ .||-.....
T Consensus 6 ~v~~C~~~~~~~~~~~ff~fP~d~~~~ 32 (86)
T d2d8ra1 6 AAAGCATTYNKHINISFHRFPLDPKRR 32 (86)
T ss_dssp CSSSCCCSCCSSCCCCCEECCSSHHHH
T ss_pred EcCCCCCCCCCCCCEEEEECCCCHHHH
Confidence 45567665555655543 467554333
No 6
>d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA {Vibrio cholerae [TaxId: 666]}
Probab=4.34 E-value=87 Score=24.53 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=37.5
Q ss_pred ceeeeccCCCCCCCChhhhhhhhhhcccccccccc--------cceeeeeccchhhHHH
Q 024616 11 TITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNV--------LKFRMRTFASKKSVKK 61 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 61 (265)
+-+||.-|--|...++..-.+--.||-..+|+-+. -..-+.+|.+....+|
T Consensus 20 ~qaYr~~G~YP~~~d~~~~~~lT~gLV~LGKIS~DEa~N~fsG~~~~I~s~~~n~a~nK 78 (171)
T d1oqva_ 20 TQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANK 78 (171)
T ss_dssp HHHHGGGSSCCCCSSHHHHHHHHHHHHHTTSSCHHHHBCTTTSSBCEEEEEEETTEEEE
T ss_pred HHHHHhcCCCCcccchhhhhhhHHHHHhcCCcCHHHhcCCCcCCceeeeeccCCccccc
Confidence 34799999999888988777778899999999876 1245556655444444
No 7
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.25 E-value=1.8e+02 Score=21.19 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=21.3
Q ss_pred cCCC---CCCCChhhhhhhhhhccccccc
Q 024616 17 SNRH---PLCPDSASMRAKFIGLHNAGKS 42 (265)
Q Consensus 17 ~~~~---~~~~~~~~~~~~~~~~~~~~~~ 42 (265)
||.| |.||+.....+|+.-.|+.+-.
T Consensus 78 snsHaQ~Fd~pd~~~~~Kk~~~~hElqPl 106 (132)
T d1r5sa_ 78 SNSHAQPFDFPDDNQNAKKVAAGHELQPL 106 (132)
T ss_dssp CCSCCCSCCCTTSSHHHHHHHTTTTSCSC
T ss_pred cccccccCCCccchhhhhhcccccccCch
Confidence 5666 6899999999999988888753
No 8
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.32 E-value=1.4e+02 Score=21.07 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.0
Q ss_pred cccceeeeccCCCCCCCChhhhhhh
Q 024616 8 HCSTITYRASNRHPLCPDSASMRAK 32 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (265)
+=.|++||.|-+|--| ||-.|..|
T Consensus 47 ~d~sLsfr~sCr~giC-GsCam~IN 70 (105)
T d1kf6b2 47 LAPDLSYRWSCRMAIC-GSCGMMVN 70 (105)
T ss_dssp TCTTCCCCCCCSSSSS-CCCEEEET
T ss_pred cCCcceEEeccCCCCC-CCCeEEEC
Confidence 4468999999999999 56555543
No 9
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.26 E-value=90 Score=24.30 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.6
Q ss_pred eeeeccCCCCCCCCh
Q 024616 12 ITYRASNRHPLCPDS 26 (265)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (265)
-+|+....|+|||..
T Consensus 81 ~~Y~l~q~hfH~pSE 95 (223)
T d1kopa_ 81 RTYTLKQFHFHVPSE 95 (223)
T ss_dssp EEEEEEEEEEESSCS
T ss_pred ceeEEEEEEECCCCc
Confidence 469999999999853
No 10
>d1wm7a_ g.3.7.2 (A:) Neurotoxin bmp01 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=3.04 E-value=1.3e+02 Score=16.67 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=8.1
Q ss_pred ccccceeeecc
Q 024616 7 NHCSTITYRAS 17 (265)
Q Consensus 7 ~~~~~~~~~~~ 17 (265)
.||+|-.-||.
T Consensus 8 ehc~tq~arak 18 (29)
T d1wm7a_ 8 EHCATQNARAK 18 (29)
T ss_dssp TTTTTTTCEEE
T ss_pred HHhhhhhhhhh
Confidence 68888777764
Done!