BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024618
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 193 bits (491), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NP HP P +EG ++G ++P++ E W+ LG AEN+ + AI
Sbjct: 19 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 78
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
+A+ R E +P N L++L VS TNE Q A + L WLR+ P Y + P
Sbjct: 79 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 138
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
LSDSL+ +V LF+ A R+ P D DV LGVL+NLS +YDKA+
Sbjct: 139 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 197
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
+ F AL ++P DY LWNKLGAT AN QS +A+ AY+RAL+L+P Y+R+ N+GIS N
Sbjct: 198 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 257
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
G + E+V +++ AL M K ++N W LR++L G+
Sbjct: 258 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 305
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 193 bits (491), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NP HP P +EG ++G ++P++ E W+ LG AEN+ + AI
Sbjct: 10 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 69
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
+A+ R E +P N L++L VS TNE Q A + L WLR+ P Y + P
Sbjct: 70 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 129
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
LSDSL+ +V LF+ A R+ P D DV LGVL+NLS +YDKA+
Sbjct: 130 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 188
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
+ F AL ++P DY LWNKLGAT AN QS +A+ AY+RAL+L+P Y+R+ N+GIS N
Sbjct: 189 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 248
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
G + E+V +++ AL M K ++N W LR++L G+
Sbjct: 249 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 296
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 193 bits (491), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NP HP P +EG ++G ++P++ E W+ LG AEN+ + AI
Sbjct: 19 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 78
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
+A+ R E +P N L++L VS TNE Q A + L WLR+ P Y + P
Sbjct: 79 SALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGG 138
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
LSDSL+ +V LF+ A R+ P D DV LGVL+NLS +YDKA+
Sbjct: 139 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 197
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
+ F AL ++P DY LWNKLGAT AN QS +A+ AY+RAL+L+P Y+R+ N+GIS N
Sbjct: 198 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 257
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
G + E+V +++ AL M K ++N W LR++L G+
Sbjct: 258 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 305
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 193 bits (490), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 156/288 (54%), Gaps = 33/288 (11%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NP HP P +EG ++G ++P++ E W+ LG AEN+ + AI
Sbjct: 59 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE------ 115
+A+ R E +P N L++L VS TNE Q A + L WLR+ P Y + P
Sbjct: 119 SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178
Query: 116 -------------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAI 160
LSDSL+ +V LF+ A R+ P D DV LGVL+NLS +YDKA+
Sbjct: 179 AGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220
+ F AL ++P DY LWNKLGAT AN QS +A+ AY+RAL+L+P Y+R+ N+GIS N
Sbjct: 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297
Query: 221 QGMYEESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
G + E+V +++ AL M K ++N W LR++L G+
Sbjct: 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 190 bits (482), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 154/283 (54%), Gaps = 33/283 (11%)
Query: 7 HPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAIAAMMR 66
HP P +EG ++G ++P++ E W+ LG AEN+ + AI+A+ R
Sbjct: 1 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 60
Query: 67 AHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE----------- 115
E +P N L++L VS TNE Q A + L WLR+ P Y + P
Sbjct: 61 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 120
Query: 116 --------LSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQT 165
LSDSL+ +V LF+ A R+ P D DV LGVL+NLS +YDKA++ F
Sbjct: 121 SKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 179
Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE 225
AL ++P DY LWNKLGAT AN QS +A+ AY+RAL+L+P Y+R+ N+GIS N G +
Sbjct: 180 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 239
Query: 226 ESVRYYVRALAMNPK-----------ADNAWQYLRISLRYAGR 257
E+V +++ AL M K ++N W LR++L G+
Sbjct: 240 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 282
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 158/278 (56%), Gaps = 27/278 (9%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NP+ P +EG + ++G ++P ++E W+ LGI AEN+++Q AI
Sbjct: 60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAI 119
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----APPEL 116
A+ R E +P NL+ L++L VS+TN Q A + L W++ +PKY + P L
Sbjct: 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179
Query: 117 S--------DSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA 166
+ DS V L++EAA + + D D+ LGVL++LS ++++AI++F A
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Query: 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226
L ++P+DYSLWN+LGAT AN +S +A+ AY RAL+++P ++R+ N+GIS N G Y E
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299
Query: 227 SVRYYVRALAMNPK------------ADNAWQYLRISL 252
+V ++ AL++ K + N W LRI+L
Sbjct: 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 141/286 (49%), Gaps = 30/286 (10%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NPY+ H NP++EG + + K PE E WR LG+ AEN+ D AI
Sbjct: 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 75
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL----- 116
A+ A +P ++ V +L VSHTNE AAL L WL P+Y + L
Sbjct: 76 IALNHARALDPADIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135
Query: 117 -------SDSLYYA------DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
S+ ++A + L A M+P DA +H LGVLYNLS YD A +
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
+ A++L+P D LWNKLGAT AN + +A+ AY RALD+ P YVR NM +SY+N
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 224 YEESVRYYVRALAM-----NPKAD-------NAWQYLRISLRYAGR 257
Y+ + + VRA+ M P + + W + R+ L R
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 140/286 (48%), Gaps = 30/286 (10%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NPY+ H NP++EG + + PE E WR LG+ AEN+ D AI
Sbjct: 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL----- 116
A+ A +P ++ V +L VSHTNE AAL L WL P+Y + L
Sbjct: 76 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135
Query: 117 -------SDSLYYA------DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
S+ ++A + L A M+P DA +H LGVLYNLS YD A +
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
+ A++L+P D LWNKLGAT AN + +A+ AY RALD+ P YVR NM +SY+N
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 224 YEESVRYYVRALAM-----NPKAD-------NAWQYLRISLRYAGR 257
Y+ + + VRA+ M P + + W + R+ L R
Sbjct: 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + + +A + P A+ LG Y YD+AIE +Q AL+L P+ W LG
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241
+AI YQ+AL+L P AW N+G +Y QG Y+E++ YY +AL ++P++
Sbjct: 77 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%)
Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199
A+ LG Y YD+AIE +Q AL+L P+ W LG +AI YQ+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
AL+L P AW N+G +Y QG Y+E++ YY +AL ++P++ AW
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 31/165 (18%)
Query: 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYG 100
+E W LG A+ + D +AI +A E +P + E +LG ++ + + A++Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY--- 57
Query: 101 WLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI 160
+ +A + P A+ LG Y YD+AI
Sbjct: 58 ----------------------------YQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 89
Query: 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP 205
E +Q AL+L P+ W LG +AI YQ+AL+L P
Sbjct: 90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Query: 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96
+P ++E W LG A+ + D +AI +A E +P + E +LG ++ + + A++
Sbjct: 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 97 YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156
Y + +A + P A+ LG Y Y
Sbjct: 91 Y-------------------------------YQKALELDPRSAEAWYNLGNAYYKQGDY 119
Query: 157 DKAIESFQTALKLKPQ 172
D+AIE +Q AL+L P+
Sbjct: 120 DEAIEYYQKALELDPR 135
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
M P + A+ LG Y YD+AIE +Q AL+L P + W LG +A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
I YQ+AL+L PN AW N+G +Y QG Y+E++ YY +AL ++P
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
W LG +AI YQ+AL+L PN AW N+G +Y QG Y+E++ YY +AL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 237 MNPKADNAWQYLRISLRYAGRY 258
++P AW L + G Y
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDY 93
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + + +A + P +A+ LG Y YD+AIE +Q AL+L P + W LG
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222
+AI YQ+AL+L PN A N+G + QG
Sbjct: 85 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 32/146 (21%)
Query: 37 NPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
+P NS E W LG A+ + D +AI +A E +P N E +LG ++ + + A+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 96 KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155
+Y + +A + P +A+ LG Y
Sbjct: 64 EY-------------------------------YQKALELDPNNAEAWYNLGNAYYKQGD 92
Query: 156 YDKAIESFQTALKLKPQDYSLWNKLG 181
YD+AIE +Q AL+L P + LG
Sbjct: 93 YDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
N AW N+G +Y QG Y+E++ YY +AL ++P AW L + G Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 59
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
M P + A+ LG Y YD+AIE +Q AL+L P + W LG +A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
I YQ+AL+L PN AW N+G +Y QG Y+E++ YY +AL + P
Sbjct: 63 IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + + +A + P +A+ LG Y YD+AIE +Q AL+L P + W LG
Sbjct: 25 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222
+AI YQ+AL+L PN A N+G + QG
Sbjct: 85 NAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
W LG +AI YQ+AL+L PN AW N+G +Y QG Y+E++ YY +AL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 237 MNPKADNAW 245
+ P AW
Sbjct: 72 LYPNNAEAW 80
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 37 NPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
+P NS E W LG A+ + D +AI +A E P N E +LG ++ + + A+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 96 KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155
+Y + +A + P +A+ LG Y
Sbjct: 64 EY-------------------------------YQKALELYPNNAEAWYNLGNAYYKQGD 92
Query: 156 YDKAIESFQTALKLKPQD 173
YD+AIE +Q AL+L P +
Sbjct: 93 YDEAIEYYQKALELYPNN 110
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
N AW N+G +Y QG Y+E++ YY +AL + P AW
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 46
>pdb|1HXI|A Chain A, An Unexpected Extended Conformation For The Third Tpr
Motif Of The Peroxin Pex5 From Trypanosoma Brucei
Length = 121
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 52/110 (47%)
Query: 2 NPYVGHPNPLKEGQELFRKGXXXXXXXXXXXXXXKNPENSEGWRLLGIAHAENDDDQQAI 61
NPY H NP +EG + K PE E WR LG+ AEN+ D AI
Sbjct: 12 NPYXYHENPXEEGLSXLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI 111
A+ A +P ++ V +L VSHTNE AAL L WL P+Y +
Sbjct: 72 IALNHARXLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
+P+ W LG TQA + + AI+A A L P + A + +S+ N+
Sbjct: 47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARXLDPKDIAVHAALAVSHTNE 98
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
M P + A+ LG Y Y KAIE +Q AL+L P + S W LG A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
I YQ+AL+L PN +AW G +Y QG Y++++ Y +AL ++P
Sbjct: 63 IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
W LG AI YQ+AL+L PN AW N+G +Y QG Y++++ YY +AL
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 237 MNPKADNAW 245
++P AW
Sbjct: 72 LDPNNAKAW 80
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + +A + P +A LG Y Y KAIE +Q AL+L P + W + G
Sbjct: 25 YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222
AI YQ+AL+L PN +A N+G + QG
Sbjct: 85 NAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 32/146 (21%)
Query: 37 NPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
+P NS E W+ LG A+ + D Q+AI +A E +P N +LG ++ + + A+
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 96 KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155
+Y + +A + P +A G Y
Sbjct: 64 EY-------------------------------YQKALELDPNNAKAWYRRGNAYYKQGD 92
Query: 156 YDKAIESFQTALKLKPQDYSLWNKLG 181
Y KAIE +Q AL+L P + LG
Sbjct: 93 YQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
N AW N+G +Y QG Y++++ YY +AL ++P +AW
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAW 46
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 3/233 (1%)
Query: 36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
+NP +E + LG + E Q+AI A +P ++ ++L + + A+
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 96 KYLYGWLRHHPKYGTIAPP--ELSDSLYYADVAR-LFVEAARMSPEDADVHIVLGVLYNL 152
+ L+++P + L +L + A+ +++A P A LG ++N
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212
+ AI F+ A+ L P + LG + A+ AY RAL L PN+
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
N+ Y QG+ + ++ Y RA+ + P +A+ L +L+ G D +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 17/210 (8%)
Query: 58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELS 117
++A A ++A E +P +LG + E ++ + H K T+ P L
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE-------IWLAIHHFEKAVTLDPNFLD 204
Query: 118 DSLYYADV---ARLF-------VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167
+ +V AR+F + A +SP A VH L +Y D AI++++ A+
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES 227
+L+P + L A+A Y AL L P + + N+ QG EE+
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAGR 257
VR Y +AL + P+ A L L+ G+
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
R P++ V ++L ++ R+ D++ A+K P ++ LG Q +A
Sbjct: 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
I Y+ AL LKP+++ + N+ + G E +V+ YV AL NP
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA 191
A + +P A+ + LG +Y Q +AIE ++ AL+LKP + L A +
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248
A+ AY AL P+ +++G G EE+ Y++A+ P AW L
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 39 ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL 98
E + + +G D AI A + +A+P N+E LL LG ++ +
Sbjct: 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD----------- 51
Query: 99 YGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158
G P + +SL + FV + A+ + +LG + +
Sbjct: 52 IGL-----------PNDAIESL------KKFV---VLDTTSAEAYYILGSANFMIDEKQA 91
Query: 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218
AI++ Q A+ L + KLG + + AI AY++ + +KP ++RA+ ++G++Y
Sbjct: 92 AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151
Query: 219 ANQGMYEESVRYY 231
+G+ +E+V+Y+
Sbjct: 152 EGKGLRDEAVKYF 164
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186
R + + + P + + + LG Y + AIES + + L + LG+
Sbjct: 26 RAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85
Query: 187 SVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246
+ AI A QRA+ L Y A+ +G+ Y + G +++++ Y + +++ P A+Q
Sbjct: 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145
Query: 247 YLRISLRYAGR 257
I L Y G+
Sbjct: 146 --SIGLAYEGK 154
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
W LG +AI YQ+AL+L PN AW N+G +Y QG Y+E++ YY +AL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 237 MNP 239
++P
Sbjct: 72 LDP 74
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 135 MSPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193
M P + A+ LG Y YD+AIE +Q AL+L P + W LG +A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 194 ILAYQRALDLKPNYVRAWANMGISYANQG 222
I YQ+AL+L PN A N+G + QG
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258
N AW N+G +Y QG Y+E++ YY +AL ++P AW L + G Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 59
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + + +A + P +A+ LG Y YD+AIE +Q AL+L P + LG
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82
+P N+E W LG A+ + D +AI +A E +P N E +LG
Sbjct: 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 37 NPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95
+P NS E W LG A+ + D +AI +A E +P N E +LG ++ + + A+
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 96 KY 97
+Y
Sbjct: 64 EY 65
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236
W LG +AI YQ+AL+L P AW N+G +Y QG Y+E++ YY +AL
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 237 MNPKA 241
++P++
Sbjct: 66 LDPRS 70
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199
A+ LG Y YD+AIE +Q AL+L P+ W LG +AI YQ+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 200 ALDLKP 205
AL+L P
Sbjct: 63 ALELDP 68
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
AW N+G +Y QG Y+E++ YY +AL ++P++ AW
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 40
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ 172
Y + + +A + P A+ LG Y YD+AIE +Q AL+L P+
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99
++E W LG A+ + D +AI +A E +P + E +LG ++ + + A++Y
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 100 GWLRHHPK 107
L P+
Sbjct: 62 KALELDPR 69
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQAAALKYLYGW 101
+R GI+HA+ QA+ + + ++A+ +++V L LG+++ T +++ L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL------ 64
Query: 102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161
L SL AD +P++ V VLG+ Y ++YD A+
Sbjct: 65 --------------LERSL--AD-----------APDNVKVATVLGLTYVQVQKYDLAVP 97
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
+ P ++++ +LG N + +AI +++ AL L+PN + + SY
Sbjct: 98 LLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
Query: 222 GMYEESVRYYVRA 234
G +EE++ ++ +A
Sbjct: 158 GRHEEALPHFKKA 170
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD-AILAY 197
D DV + LG+ Y + D+ E + +L P + + LG T VQ D A+
Sbjct: 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDLAVPLL 99
Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
+ + P +G++ N G ++E++ + AL + P + + S GR
Sbjct: 100 IKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
Query: 258 Y 258
+
Sbjct: 160 H 160
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV 232
D +L + + +V +L +R+L P+ V+ +G++Y Y+ +V +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELL--ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100
Query: 233 RALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
+ NP N L ++L+ GR+ D F
Sbjct: 101 KVAEANPINFNVRFRLGVALKNLGRFDEAIDSF 133
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87
P+N + +LG+ + + A+ +++ EA P N V LGV+ N
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKN 122
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQAAALKYLYGW 101
+R GI+HA+ QA+ + + ++A+ +++V L LG+++ T +++ L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL------ 64
Query: 102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161
L SL AD +P++ V VLG+ Y ++YD A+
Sbjct: 65 --------------LERSL--AD-----------APDNVKVATVLGLTYVQVQKYDLAVP 97
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221
+ P ++++ +LG N + +AI +++ AL L+PN + + SY
Sbjct: 98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
Query: 222 GMYEESVRYYVRA 234
G +EE++ ++ +A
Sbjct: 158 GRHEEALPHFKKA 170
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD-AILAY 197
D DV + LG+ Y + D+ E + +L P + + LG T VQ D A+
Sbjct: 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLL 99
Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
+ + P +G++ N G ++E++ + AL + P + + S GR
Sbjct: 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
Query: 258 Y 258
+
Sbjct: 160 H 160
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87
P+N + +LG+ + + A+ +++ EA P N V LGV+ N
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV 232
D +L + + +V +L +R+L P+ V+ +G++Y Y+ +V +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELL--ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100
Query: 233 RALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
+ NP N L ++L GR+ D F
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103
+R GI+HA+ +A+ + + ++A+ ++EV L LG+++
Sbjct: 11 YRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYV----------------- 53
Query: 104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163
K G + L + +P++ V VLG+ Y ++YD A+
Sbjct: 54 ---KTGAVDRG-----------TELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLL 99
Query: 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223
+ P ++++ +LG N + +AI +++ AL L+PN + + SY G
Sbjct: 100 VKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Query: 224 YEESVRYYVRALAMNPKA 241
+EE++ ++ +A ++ ++
Sbjct: 160 HEEALPHFKKANELDERS 177
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87
P+N + +LG+ + + A+ +++ EA P N V LGV+ N
Sbjct: 73 PDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDN 122
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
+R++ P+ ++ +G++Y Y+ +V V+ NP N L ++L GR
Sbjct: 66 ERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGR 125
Query: 258 YPNRGDIF 265
+ D F
Sbjct: 126 FDEAIDSF 133
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 45/209 (21%)
Query: 48 GIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH--TNELEQAAALKYLYGWLRHH 105
GI+HA+ QA+ + + ++A+ +++V L LG+++ T +++ L
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL---------- 64
Query: 106 PKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165
L SL AD +P++ V VLG+ Y ++YD A+
Sbjct: 65 ----------LERSL--AD-----------APDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE 225
+ P ++++ +LG N + +AI +++ AL L+PN + + SY G +E
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161
Query: 226 ESVRYYVRA----------LAMNPKADNA 244
E++ ++ +A LA+ P+ +A
Sbjct: 162 EALPHFKKANELDEGASVELALVPRGSSA 190
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD-AILAY 197
D DV + LG+ Y + D+ E + +L P + + LG T VQ D A+
Sbjct: 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDLAVPLL 99
Query: 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257
+ + P +G++ N G ++E++ + AL + P + + S GR
Sbjct: 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
Query: 258 Y 258
+
Sbjct: 160 H 160
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87
P+N + +LG+ + + A+ +++ EA P N V LGV+ N
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV 232
D +L + + +V +L +R+L P+ V+ +G++Y Y+ +V +
Sbjct: 43 DVALHLGIAYVKTGAVDRGTELL--ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100
Query: 233 RALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265
+ NP N L ++L GR+ D F
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%)
Query: 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215
++ A+ + A++L P + + A + A A+ +RA+ + P Y +A+ MG
Sbjct: 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
++ ++ + E+V YY +AL ++P + L+I+
Sbjct: 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252
A+ Y +A++L P + N +Y+ G Y +V+ RA+ ++P A+ + ++L
Sbjct: 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%)
Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206
G +Y + Y +A + F+ AL+ ++ L+ LG Q A+ QRA++L N
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
A G+ AN+GM +E++ + +P +A+
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + +F +A R E+ D+ +LG + Q A+ Q A++L D + G
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166
Query: 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239
AN +A+ + + P + A+ N G++YA + E+++ +A+ + P
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 136 SPEDADVHIVLGVLYNLSRQ---YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
P AD L L N+ R+ ++A+ ++ AL++ P+ + + L + + +
Sbjct: 5 CPTHADS---LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252
A++ Y+ A+ + P + A++NMG + + +++ Y RA+ +NP +A L
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 253 RYAGRYP 259
+ +G P
Sbjct: 122 KDSGNIP 128
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP 171
+ + A +++P AD H L ++ S +AI S++TALKLKP
Sbjct: 98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190
+A + P++ +V +Y + DKA ESF+ AL +KP + N G +
Sbjct: 33 DALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92
Query: 191 ADAILAYQRALDLKPNYVRAWA---NMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247
+AY P Y + N GI A QG + + Y R+LA P+ A++
Sbjct: 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152
Query: 248 LRISLRYAGR 257
L + AG+
Sbjct: 153 LARTKMLAGQ 162
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA-NSVQSADAILAY 197
D H LG+LY L DKA+E ++ +++L P L K+ N V A
Sbjct: 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123
Query: 198 QRALDLKP 205
+RA L P
Sbjct: 124 ERAAKLFP 131
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA-NSVQSADAILAY 197
D H LG+LY L DKA+E ++ +++L P L K+ N V A
Sbjct: 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWL 123
Query: 198 QRALDLKP 205
+RA L P
Sbjct: 124 ERAAKLFP 131
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA-NSVQSADAILAY 197
D H LG+LY L DKA+E ++ +++L P L K+ N V A
Sbjct: 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPXQKDLVLKIAELLCKNDVTDGRAKYWV 123
Query: 198 QRALDLKP 205
+RA L P
Sbjct: 124 ERAAKLFP 131
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216
D A++ + A+KL P ++ L++ A A A + +DLKP++ + ++
Sbjct: 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80
Query: 217 SYANQGMYEESVRYYVRAL---AMNPKADNAWQYL 248
+ +EE+ R Y L A NP+ Q +
Sbjct: 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 31/67 (46%)
Query: 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251
DA+ Y A+ L P+ ++N +YA +G Y+++ + + + P + +
Sbjct: 22 DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81
Query: 252 LRYAGRY 258
L + R+
Sbjct: 82 LEFLNRF 88
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRAL 201
V + +G L Y KA E ++ + ++ P D ++WN+LG + ++ +++ + RAL
Sbjct: 132 VLLRMGDLMRYKENYPKAQEYYEQSCRINPADGAVWNQLGLISSLGAKNLESVYFHTRAL 191
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192
A ++PE A+ + G Y + A++++ +K P+D ++ A A + +
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 193 AILAYQRALDLKPNYVRAW 211
AI +A++ PN+VRA+
Sbjct: 192 AIADCNKAIEKDPNFVRAY 210
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT-QANSVQSADAIL--A 196
AD G + +RQ+D+AIE + A +L L N+ A + ++A + L A
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64
Query: 197 YQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
++ +++ +Y +++A +G +Y G ++++ YY ++L + AD
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD 113
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY--SLWNKLGATQANSVQSA 191
R + D V LG Y +++Y KA SF L+LKP Y LW +AN+ Q
Sbjct: 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR----ARANAAQDP 191
Query: 192 DAILAYQRALDLKPNY---VRAWANMGISYANQGM-YEESVRYYVRALAMNPKADNAWQ 246
D ++ L KP Y + A G Y ++ + E + YY KAD AW+
Sbjct: 192 DT----KQGL-AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 147 GVLYNLSRQYDKAIESFQT------ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200
V Y +YD A + +T A K K D+ + K+ + Q + AI YQ A
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILXKKG---QDSLAIQQYQAA 100
Query: 201 LDLKPNYVRAWANMGISYANQGMYEESVRYY---VRALAMNPK 240
+D + + +G + N+G + +++Y +R +PK
Sbjct: 101 VDRDTTRLDXYGQIGSYFYNKGNFPLAIQYXEKQIRPTTTDPK 143
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173
P L + A ++ A E A + GVLY+ A F AL ++P
Sbjct: 17 PTLQQEVILARXEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDX 76
Query: 174 YSLWNKLGA--TQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217
++N LG TQA + +A A+ L+L P Y A N GI+
Sbjct: 77 PEVFNYLGIYLTQAGNFDAA--YEAFDSVLELDPTYNYAHLNRGIA 120
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--PQDYS--- 175
Y + +A R++P A +H+ G++Y L + DKA S + AL L+ P+ S
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158
Query: 176 -LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215
L+ +G Q A A+ + LDL+ Y A G
Sbjct: 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%)
Query: 154 RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN 213
++Y KAI+ + AL + P + + A + S Q A + A + P Y +AW+
Sbjct: 25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84
Query: 214 MGISYANQGMYEESVRYYVRAL 235
+G++ + Y+ + Y + +
Sbjct: 85 LGLARFDMADYKGAKEAYEKGI 106
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 40/85 (47%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y+ L+ +A ++P + Y+ S Q++KA E + A + P+ W++LG
Sbjct: 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86
Query: 182 ATQANSVQSADAILAYQRALDLKPN 206
+ + A AY++ ++ + N
Sbjct: 87 LARFDMADYKGAKEAYEKGIEAEGN 111
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--------PQDYSLWNKLGATQANSV 188
P+ A + +L ++Y +Y A AL ++ P + N L
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125
Query: 189 QSADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
+ +A +RAL+++ P+ + N+ + NQG YEE YY RAL +
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182
>pdb|3CA8|A Chain A, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
pdb|3CA8|B Chain B, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
Length = 266
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLF--VEA 132
+ +L+S G+ H+ +LY + HP Y TI +++ AD+A F +
Sbjct: 63 IPLLISGGIGHST--------TFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPH 114
Query: 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT 183
++ ED + ++++ ++A+E TA+ + QD ++ + AT
Sbjct: 115 EKIWIEDQSTNCGENARFSIAL-LNQAVERVHTAIVV--QDPTMQRRTMAT 162
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/89 (17%), Positives = 41/89 (46%)
Query: 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215
Y +A++ + A+K P+D L++ A ++ A+ + + L+P +++ +
Sbjct: 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91
Query: 216 ISYANQGMYEESVRYYVRALAMNPKADNA 244
+ Y +++ Y +AL ++ A
Sbjct: 92 AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181
Y + + EA + +P+DA ++ Y ++ A++ + ++L+P + +
Sbjct: 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91
Query: 182 ATQANSVQSADAILAYQRALDL 203
A A+ YQ+ALDL
Sbjct: 92 AALEAMKDYTKAMDVYQKALDL 113
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 214 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 262
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 263 VQYTLEMIKLVPHNESAWNYLKGILQDRG 291
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 213 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 261
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 262 VQYTLEMIKLVPHNESAWNYLKGILQDRG 290
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206
G+ + L A Q ++ L P S + L T A+ S + +Q+A+DL P
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHPTPNS-YIFLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252
Y + + G Y Y+ + + +A ++NP +N + Y++++
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYIQLAC 352
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 211 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 259
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGILQDRG 288
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 211 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 259
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGILQDRG 288
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL--------KPNYVRA 210
A E Q++ L D L N+LG N AI +Q AL L KP +
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-WAAT 518
Query: 211 WANMGISYANQGMYEESV 228
WAN+G +Y MY+ ++
Sbjct: 519 WANLGHAYRKLKMYDAAI 536
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245
+D P W +GI Y E+ RY+ ++ M+P+ AW
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW 410
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206
G+ + L A Q ++ L P S + L T A+ S + +Q+A+DL P
Sbjct: 246 GIFHFLKNNLLDAQVLLQESINLHPTPNS-YIFLALTLADKENSQEFFKFFQKAVDLNPE 304
Query: 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252
Y + + G Y Y+ + + +A ++NP +N + Y++++
Sbjct: 305 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYIQLAC 348
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 158 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 206
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 207 VQYTLEMIKLVPHNESAWNYLKGILQDRG 235
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 167 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 215
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 216 VQYTLEMIKLVPHNESAWNYLKGILQDRG 244
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 157 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 205
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG 234
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 157 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 205
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG 234
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--------PQDYSLWNKLGATQANSV 188
P+ A + +L ++Y +Y +A AL ++ P + N L
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 189 QSADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
+ +A +RAL+++ P+ + +N+ + NQG EE YY RAL +
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEI 156
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 157 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 205
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG 234
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V + IS Y+++ + E
Sbjct: 158 QEFRLWD-------NELQYVDQLLKE----DVRNNSVWNQRHFVISNTTGYSDRAVLERE 206
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 207 VQYTLEMIKLVPHNESAWNYLKGILQDRG 235
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 189 QSADAILAYQRALDL-----KPNYV-RAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242
Q DAI +Q+A + +P + R N+G+ +Q YE+++ Y+ RA+A+ +++
Sbjct: 199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV------RAWANMG 215
S TAL + + LG T DA++A+++ L + + RA++N+G
Sbjct: 173 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 232
Query: 216 ISYANQGMYEESVRYYVRALAM 237
+Y G +E + YY + L +
Sbjct: 233 NAYIFLGEFETASEYYKKTLLL 254
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMG 215
S TAL + + LG T DA++A+++ L + + RA++N+G
Sbjct: 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234
Query: 216 ISYANQGMYEESVRYYVRALAM 237
+Y G +E + YY + L +
Sbjct: 235 NAYIFLGEFETASEYYKKTLLL 256
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV------RAWANMG 215
S TAL + + LG T DA++A+++ L + + RA++N+G
Sbjct: 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230
Query: 216 ISYANQGMYEESVRYYVRALAM 237
+Y G +E + YY + L +
Sbjct: 231 NAYIFLGEFETASEYYKKTLLL 252
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194
M E+A + G Y + A++++ +K P+D ++ A A + +AI
Sbjct: 2 MKAEEARLE---GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 58
Query: 195 LAYQRALDLKPNYVRAW 211
+A++ PN+VRA+
Sbjct: 59 ADCNKAIEKDPNFVRAY 75
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--------PQDYSLWNKLGATQANSV 188
P+ A + +L ++Y +Y +A AL ++ P + N L
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 189 QSADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237
+ +A +RAL+++ P+ + N+ + NQG EE YY RAL +
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 111 IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV 148
++PP S + DV R+F + +++ + ADV ++G+
Sbjct: 128 LSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSIIGL 165
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V IS Y ++ + E
Sbjct: 211 QEFKLWD-------NELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGILQDRG 288
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 172 QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS----YANQGMYEES 227
Q++ LW+ N +Q D +L D++ N V IS Y ++ + E
Sbjct: 211 QEFKLWD-------NELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGYNDRAVLERE 259
Query: 228 VRYYVRALAMNPKADNAWQYLRISLRYAG 256
V+Y + + + P ++AW YL+ L+ G
Sbjct: 260 VQYTLEMIKLVPHNESAWNYLKGILQDRG 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,831,850
Number of Sequences: 62578
Number of extensions: 288624
Number of successful extensions: 1079
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 206
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)