Query 024618
Match_columns 265
No_of_seqs 870 out of 1506
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 06:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1E-40 2.2E-45 256.6 19.5 257 9-265 220-479 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 4.7E-39 1E-43 247.5 20.3 255 11-265 188-445 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 4.4E-34 9.5E-39 236.0 27.9 254 10-264 130-489 (615)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-32 2.3E-37 227.8 25.4 246 20-265 307-565 (615)
5 PRK15174 Vi polysaccharide exp 100.0 2.7E-32 5.8E-37 225.2 26.6 256 9-264 78-374 (656)
6 KOG1126 DNA-binding cell divis 100.0 6.5E-33 1.4E-37 215.0 20.9 252 14-265 326-614 (638)
7 PRK15174 Vi polysaccharide exp 100.0 9E-32 2E-36 222.0 27.6 251 8-258 111-407 (656)
8 KOG1125 TPR repeat-containing 100.0 5.9E-32 1.3E-36 206.7 23.7 261 1-261 279-561 (579)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-30 2.5E-35 225.7 27.4 255 10-265 604-894 (899)
10 PRK11447 cellulose synthase su 100.0 2.7E-30 5.8E-35 226.1 27.6 252 13-264 275-659 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-30 1.4E-34 221.0 27.6 256 8-265 568-860 (899)
12 PRK11447 cellulose synthase su 100.0 5.8E-30 1.3E-34 224.0 26.9 253 12-264 356-693 (1157)
13 PRK11788 tetratricopeptide rep 100.0 1.2E-29 2.7E-34 199.8 25.4 255 9-264 37-304 (389)
14 KOG1126 DNA-binding cell divis 100.0 1E-30 2.2E-35 202.9 18.0 222 43-264 319-579 (638)
15 PF13429 TPR_15: Tetratricopep 100.0 2.4E-31 5.2E-36 199.8 13.3 256 9-265 10-271 (280)
16 PRK09782 bacteriophage N4 rece 100.0 5.3E-29 1.2E-33 210.6 25.2 254 6-263 476-732 (987)
17 KOG1155 Anaphase-promoting com 100.0 1.2E-28 2.6E-33 184.1 22.5 251 13-263 268-528 (559)
18 KOG0547 Translocase of outer m 100.0 2.4E-28 5.3E-33 183.6 20.6 254 12-265 120-485 (606)
19 PRK11788 tetratricopeptide rep 100.0 2.5E-27 5.4E-32 186.8 26.5 255 8-263 70-339 (389)
20 KOG1155 Anaphase-promoting com 100.0 2.9E-27 6.4E-32 176.8 24.4 254 12-265 232-489 (559)
21 KOG0547 Translocase of outer m 100.0 2E-27 4.4E-32 178.7 21.8 244 22-265 294-560 (606)
22 PRK09782 bacteriophage N4 rece 100.0 2.8E-27 6E-32 200.3 24.4 243 20-265 451-700 (987)
23 KOG1173 Anaphase-promoting com 100.0 1.3E-26 2.8E-31 177.1 23.0 251 3-254 275-535 (611)
24 KOG1173 Anaphase-promoting com 100.0 1.1E-26 2.3E-31 177.6 20.6 255 11-265 248-512 (611)
25 PRK12370 invasion protein regu 100.0 2.5E-26 5.4E-31 187.1 22.3 248 11-260 262-525 (553)
26 PRK10049 pgaA outer membrane p 100.0 1.2E-25 2.5E-30 189.5 26.0 253 10-263 86-448 (765)
27 KOG1129 TPR repeat-containing 99.9 5.2E-26 1.1E-30 163.6 18.5 239 12-251 228-472 (478)
28 KOG0624 dsRNA-activated protei 99.9 9.7E-26 2.1E-30 163.2 19.5 256 9-264 40-363 (504)
29 KOG2076 RNA polymerase III tra 99.9 7.5E-25 1.6E-29 175.6 24.8 255 10-264 142-505 (895)
30 PRK10049 pgaA outer membrane p 99.9 1.1E-24 2.3E-29 183.7 26.2 253 10-263 52-414 (765)
31 PRK11189 lipoprotein NlpI; Pro 99.9 1E-24 2.2E-29 164.2 23.2 234 19-257 38-286 (296)
32 TIGR02521 type_IV_pilW type IV 99.9 2.7E-24 5.9E-29 157.8 23.9 201 10-239 34-234 (234)
33 PRK12370 invasion protein regu 99.9 2E-24 4.2E-29 176.1 24.5 221 37-257 252-490 (553)
34 TIGR00540 hemY_coli hemY prote 99.9 5.5E-24 1.2E-28 167.6 24.6 255 10-265 121-393 (409)
35 KOG2002 TPR-containing nuclear 99.9 1.6E-24 3.5E-29 174.9 20.9 252 5-256 162-428 (1018)
36 PRK11189 lipoprotein NlpI; Pro 99.9 1.6E-24 3.4E-29 163.2 19.8 210 9-222 66-285 (296)
37 KOG1129 TPR repeat-containing 99.9 7.6E-25 1.6E-29 157.6 15.4 248 16-264 188-451 (478)
38 PF13429 TPR_15: Tetratricopep 99.9 7.8E-26 1.7E-30 170.0 10.1 231 5-237 42-277 (280)
39 COG3063 PilF Tfp pilus assembl 99.9 5.3E-23 1.2E-27 141.2 22.7 206 10-244 38-243 (250)
40 KOG2002 TPR-containing nuclear 99.9 1.5E-23 3.3E-28 169.4 21.3 249 8-256 129-390 (1018)
41 PRK10747 putative protoheme IX 99.9 1.1E-22 2.3E-27 159.6 24.2 249 13-265 124-384 (398)
42 TIGR02521 type_IV_pilW type IV 99.9 7.3E-23 1.6E-27 150.2 22.0 194 40-264 30-225 (234)
43 KOG0548 Molecular co-chaperone 99.9 2.9E-23 6.3E-28 158.2 18.9 254 11-265 6-449 (539)
44 TIGR00540 hemY_coli hemY prote 99.9 6.3E-22 1.4E-26 156.0 24.7 255 11-265 88-358 (409)
45 COG3063 PilF Tfp pilus assembl 99.9 2.9E-22 6.3E-27 137.6 19.3 189 42-261 36-226 (250)
46 PLN02789 farnesyltranstransfer 99.9 6.4E-22 1.4E-26 148.8 23.1 204 17-220 47-267 (320)
47 KOG1125 TPR repeat-containing 99.9 1.1E-23 2.4E-28 161.7 12.6 221 45-265 289-521 (579)
48 PLN02789 farnesyltranstransfer 99.9 5.7E-22 1.2E-26 149.1 21.4 207 49-255 45-268 (320)
49 KOG0550 Molecular chaperone (D 99.9 7.3E-24 1.6E-28 156.7 10.3 255 10-264 52-343 (486)
50 KOG0548 Molecular co-chaperone 99.9 2.7E-21 5.9E-26 147.6 22.8 239 11-255 228-473 (539)
51 KOG0624 dsRNA-activated protei 99.9 1.6E-21 3.4E-26 141.6 19.6 243 9-251 74-384 (504)
52 KOG4162 Predicted calmodulin-b 99.9 3E-21 6.5E-26 152.9 22.7 243 23-265 460-777 (799)
53 KOG1174 Anaphase-promoting com 99.9 2.1E-21 4.5E-26 144.0 20.1 243 12-255 237-518 (564)
54 KOG2003 TPR repeat-containing 99.9 9.5E-22 2.1E-26 148.0 18.3 234 24-257 473-709 (840)
55 COG2956 Predicted N-acetylgluc 99.9 1.3E-20 2.9E-25 135.5 23.0 231 10-241 38-282 (389)
56 KOG0495 HAT repeat protein [RN 99.9 1.4E-20 2.9E-25 147.0 23.3 248 11-259 588-868 (913)
57 KOG2076 RNA polymerase III tra 99.9 1.7E-20 3.7E-25 150.9 24.4 255 6-260 172-544 (895)
58 KOG2003 TPR repeat-containing 99.9 2.9E-21 6.3E-26 145.4 18.8 255 11-265 423-683 (840)
59 PRK14574 hmsH outer membrane p 99.9 3.1E-20 6.8E-25 155.0 25.8 250 13-263 108-505 (822)
60 PRK10747 putative protoheme IX 99.9 7E-20 1.5E-24 143.8 24.1 251 11-265 88-351 (398)
61 KOG1840 Kinesin light chain [C 99.9 1.9E-20 4.1E-25 147.0 20.7 226 11-236 203-478 (508)
62 KOG0495 HAT repeat protein [RN 99.9 8.6E-20 1.9E-24 142.7 24.0 237 10-246 519-791 (913)
63 TIGR03302 OM_YfiO outer membra 99.9 6E-20 1.3E-24 134.8 19.8 191 9-239 35-234 (235)
64 KOG1840 Kinesin light chain [C 99.9 5.4E-20 1.2E-24 144.4 19.8 228 37-264 195-472 (508)
65 COG2956 Predicted N-acetylgluc 99.9 1.1E-19 2.3E-24 130.9 19.6 217 45-262 39-269 (389)
66 PRK14574 hmsH outer membrane p 99.9 2.7E-19 5.8E-24 149.5 25.0 249 16-264 77-472 (822)
67 PRK15359 type III secretion sy 99.9 2.8E-20 6.1E-25 124.9 14.8 128 126-256 13-140 (144)
68 TIGR03302 OM_YfiO outer membra 99.9 3E-19 6.4E-24 131.1 21.0 183 37-264 29-225 (235)
69 KOG1174 Anaphase-promoting com 99.9 3.7E-19 8E-24 132.2 19.7 251 14-265 203-494 (564)
70 KOG4162 Predicted calmodulin-b 99.8 2E-18 4.4E-23 137.2 21.7 237 7-243 478-789 (799)
71 PLN03081 pentatricopeptide (PP 99.8 1.3E-18 2.9E-23 146.4 22.0 246 13-264 265-550 (697)
72 KOG0550 Molecular chaperone (D 99.8 1.9E-19 4.2E-24 133.5 14.8 234 7-240 83-353 (486)
73 PLN03218 maturation of RBCL 1; 99.8 2.1E-17 4.5E-22 141.9 26.8 250 13-264 478-741 (1060)
74 KOG1156 N-terminal acetyltrans 99.8 4.5E-18 9.7E-23 132.8 20.4 245 9-253 9-264 (700)
75 PRK10370 formate-dependent nit 99.8 9.8E-18 2.1E-22 118.4 19.9 126 119-244 52-180 (198)
76 PLN03218 maturation of RBCL 1; 99.8 7.3E-17 1.6E-21 138.6 27.8 251 13-265 443-707 (1060)
77 PRK15359 type III secretion sy 99.8 7.4E-19 1.6E-23 118.0 12.1 107 115-221 33-139 (144)
78 cd05804 StaR_like StaR_like; a 99.8 2.4E-17 5.1E-22 128.6 21.0 202 10-239 9-217 (355)
79 cd05804 StaR_like StaR_like; a 99.8 8.5E-18 1.9E-22 131.1 16.4 197 37-265 2-209 (355)
80 PF12569 NARP1: NMDA receptor- 99.8 2.3E-16 4.9E-21 125.6 24.1 252 10-263 7-283 (517)
81 KOG3060 Uncharacterized conser 99.8 1.8E-16 3.8E-21 110.8 20.1 201 21-221 26-238 (289)
82 PLN03081 pentatricopeptide (PP 99.8 8.1E-17 1.7E-21 135.7 21.3 249 9-264 191-484 (697)
83 TIGR02552 LcrH_SycD type III s 99.8 3.7E-17 8.1E-22 109.5 15.6 121 127-247 4-124 (135)
84 KOG3060 Uncharacterized conser 99.8 1.9E-16 4.2E-21 110.6 19.0 185 70-254 47-237 (289)
85 KOG1156 N-terminal acetyltrans 99.8 5E-16 1.1E-20 121.6 23.2 169 12-180 46-259 (700)
86 COG5010 TadD Flp pilus assembl 99.8 6.9E-17 1.5E-21 113.7 16.6 179 54-233 46-227 (257)
87 COG5010 TadD Flp pilus assembl 99.8 3.2E-16 7E-21 110.3 18.9 182 19-201 45-229 (257)
88 PRK10370 formate-dependent nit 99.8 3.3E-16 7.2E-21 110.7 18.6 154 14-209 23-179 (198)
89 COG3071 HemY Uncharacterized e 99.8 5.1E-15 1.1E-19 109.9 24.4 249 12-264 89-383 (400)
90 KOG1128 Uncharacterized conser 99.7 2.5E-16 5.3E-21 124.9 18.4 216 11-238 402-617 (777)
91 KOG1127 TPR repeat-containing 99.7 2.3E-16 5.1E-21 128.8 18.4 233 20-252 471-723 (1238)
92 KOG1127 TPR repeat-containing 99.7 2.8E-16 6E-21 128.4 18.6 244 10-254 402-676 (1238)
93 KOG0553 TPR repeat-containing 99.7 9.4E-17 2E-21 115.1 13.9 119 141-259 82-200 (304)
94 PLN03077 Protein ECB2; Provisi 99.7 1.3E-15 2.9E-20 131.2 22.6 244 11-264 428-713 (857)
95 PLN03077 Protein ECB2; Provisi 99.7 2E-15 4.3E-20 130.2 23.0 184 76-264 425-647 (857)
96 PRK14720 transcript cleavage f 99.7 9.6E-16 2.1E-20 127.5 19.6 204 36-254 26-269 (906)
97 PRK15363 pathogenicity island 99.7 6.6E-16 1.4E-20 101.8 14.4 110 131-240 25-135 (157)
98 PRK14720 transcript cleavage f 99.7 4.5E-16 9.8E-21 129.4 16.8 195 8-219 32-268 (906)
99 PRK15179 Vi polysaccharide bio 99.7 5.2E-15 1.1E-19 122.0 22.2 143 69-242 80-222 (694)
100 PRK15179 Vi polysaccharide bio 99.7 3.9E-16 8.5E-21 128.5 15.5 142 124-265 70-211 (694)
101 KOG1128 Uncharacterized conser 99.7 9.5E-16 2.1E-20 121.6 15.9 212 39-265 396-610 (777)
102 KOG0553 TPR repeat-containing 99.7 4.5E-16 9.8E-21 111.7 11.8 113 113-225 88-200 (304)
103 PF12569 NARP1: NMDA receptor- 99.7 5.9E-14 1.3E-18 111.9 24.6 250 12-264 43-327 (517)
104 KOG1130 Predicted G-alpha GTPa 99.7 2E-16 4.2E-21 118.1 9.5 252 12-263 22-336 (639)
105 PF04733 Coatomer_E: Coatomer 99.7 4.9E-16 1.1E-20 115.8 11.2 161 77-242 104-270 (290)
106 TIGR02552 LcrH_SycD type III s 99.7 8.5E-15 1.8E-19 98.0 15.4 116 29-175 5-120 (135)
107 COG3071 HemY Uncharacterized e 99.7 1.2E-13 2.5E-18 102.8 22.0 224 10-237 121-390 (400)
108 PRK10866 outer membrane biogen 99.7 6.2E-14 1.3E-18 102.2 20.3 81 7-87 32-118 (243)
109 PF04733 Coatomer_E: Coatomer 99.7 1.7E-15 3.7E-20 113.0 11.8 242 11-261 5-254 (290)
110 PF13525 YfiO: Outer membrane 99.7 2.4E-14 5.2E-19 102.1 17.1 175 3-191 1-195 (203)
111 PLN03088 SGT1, suppressor of 99.6 1.1E-14 2.4E-19 112.4 15.0 113 143-255 5-117 (356)
112 KOG3785 Uncharacterized conser 99.6 1.2E-13 2.5E-18 101.7 18.8 136 12-147 62-226 (557)
113 KOG2376 Signal recognition par 99.6 8.3E-14 1.8E-18 108.4 17.4 231 8-243 13-259 (652)
114 PRK15363 pathogenicity island 99.6 9.8E-15 2.1E-19 96.3 10.6 96 10-105 38-133 (157)
115 PRK10866 outer membrane biogen 99.6 9.3E-13 2E-17 96.1 21.0 166 40-233 31-237 (243)
116 PF13525 YfiO: Outer membrane 99.6 9.3E-13 2E-17 93.9 18.5 108 40-175 4-125 (203)
117 KOG1915 Cell cycle control pro 99.6 4.5E-12 9.8E-17 96.8 22.4 132 133-265 315-494 (677)
118 COG4783 Putative Zn-dependent 99.6 2.9E-12 6.2E-17 98.1 21.0 150 72-238 303-455 (484)
119 PLN03088 SGT1, suppressor of 99.6 1.6E-13 3.4E-18 106.1 14.0 110 113-222 9-118 (356)
120 COG4783 Putative Zn-dependent 99.6 2.8E-12 6.2E-17 98.1 20.1 139 113-251 313-451 (484)
121 TIGR02795 tol_pal_ybgF tol-pal 99.5 4E-13 8.6E-18 87.9 13.2 107 140-246 2-114 (119)
122 KOG1130 Predicted G-alpha GTPa 99.5 1.8E-13 3.8E-18 102.6 12.4 250 10-259 58-372 (639)
123 KOG4340 Uncharacterized conser 99.5 4.8E-12 1E-16 91.3 18.5 242 16-261 19-329 (459)
124 KOG4340 Uncharacterized conser 99.5 2.2E-13 4.9E-18 98.0 11.7 211 51-263 20-262 (459)
125 COG4235 Cytochrome c biogenesi 99.5 3E-12 6.4E-17 92.9 17.1 121 122-242 138-261 (287)
126 KOG2376 Signal recognition par 99.5 3.7E-12 8E-17 99.4 18.4 216 43-265 14-247 (652)
127 PF13414 TPR_11: TPR repeat; P 99.5 1.2E-13 2.6E-18 80.8 7.4 67 173-239 2-69 (69)
128 CHL00033 ycf3 photosystem I as 99.5 2.1E-12 4.5E-17 89.6 14.8 134 122-258 15-167 (168)
129 COG4235 Cytochrome c biogenesi 99.5 2.3E-12 5.1E-17 93.4 14.8 124 22-173 137-260 (287)
130 PRK02603 photosystem I assembl 99.5 1.5E-12 3.2E-17 90.7 13.5 118 137-257 32-166 (172)
131 cd00189 TPR Tetratricopeptide 99.5 1E-12 2.2E-17 82.3 11.7 99 142-240 2-100 (100)
132 PRK04841 transcriptional regul 99.5 1.6E-11 3.4E-16 107.3 22.7 253 12-264 457-753 (903)
133 PF09976 TPR_21: Tetratricopep 99.5 7.5E-12 1.6E-16 84.5 16.2 134 89-235 6-145 (145)
134 KOG3785 Uncharacterized conser 99.5 1.1E-11 2.4E-16 91.5 17.9 252 8-262 152-448 (557)
135 PRK15331 chaperone protein Sic 99.5 2.7E-12 5.9E-17 85.2 13.0 114 131-245 28-141 (165)
136 KOG1915 Cell cycle control pro 99.5 7.4E-11 1.6E-15 90.3 21.8 251 9-260 75-340 (677)
137 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.4E-12 2.9E-17 85.3 11.2 102 8-109 3-110 (119)
138 PF13414 TPR_11: TPR repeat; P 99.5 5.6E-13 1.2E-17 77.9 8.2 67 40-106 2-69 (69)
139 KOG3081 Vesicle coat complex C 99.5 6E-11 1.3E-15 84.2 19.5 229 9-242 10-276 (299)
140 COG4785 NlpI Lipoprotein NlpI, 99.5 2.5E-11 5.4E-16 83.6 16.8 192 42-238 66-267 (297)
141 cd00189 TPR Tetratricopeptide 99.4 2.3E-12 4.9E-17 80.7 10.6 98 10-107 3-100 (100)
142 PF12895 Apc3: Anaphase-promot 99.4 4.8E-13 1E-17 81.4 6.8 82 19-101 1-84 (84)
143 PF13432 TPR_16: Tetratricopep 99.4 6.6E-13 1.4E-17 76.6 6.8 65 11-75 1-65 (65)
144 PRK11906 transcriptional regul 99.4 1.1E-11 2.5E-16 95.3 15.2 121 122-242 274-406 (458)
145 PRK02603 photosystem I assembl 99.4 9.6E-12 2.1E-16 86.6 13.7 113 10-139 38-153 (172)
146 PRK10153 DNA-binding transcrip 99.4 3.4E-11 7.4E-16 96.9 18.7 150 36-209 332-488 (517)
147 PF12895 Apc3: Anaphase-promot 99.4 5.8E-13 1.2E-17 81.0 6.6 81 153-234 2-84 (84)
148 PF14938 SNAP: Soluble NSF att 99.4 2.9E-11 6.2E-16 90.9 17.1 171 46-242 40-230 (282)
149 PRK11906 transcriptional regul 99.4 6.5E-11 1.4E-15 91.2 18.9 178 37-236 244-435 (458)
150 PRK04841 transcriptional regul 99.4 2.1E-10 4.5E-15 100.4 24.1 254 11-264 413-713 (903)
151 PF13432 TPR_16: Tetratricopep 99.4 1.4E-12 3E-17 75.3 6.9 64 179-242 2-65 (65)
152 COG0457 NrfG FOG: TPR repeat [ 99.4 1.3E-09 2.9E-14 80.1 24.7 221 20-240 36-268 (291)
153 PRK10153 DNA-binding transcrip 99.4 2.2E-11 4.8E-16 98.0 15.7 123 120-243 356-488 (517)
154 COG4105 ComL DNA uptake lipopr 99.4 2.3E-10 4.9E-15 81.5 18.9 176 7-196 34-226 (254)
155 PF09976 TPR_21: Tetratricopep 99.4 3.7E-11 8.1E-16 81.1 14.3 126 10-167 14-145 (145)
156 CHL00033 ycf3 photosystem I as 99.4 3.2E-11 6.9E-16 83.7 14.0 86 23-108 15-105 (168)
157 PRK10803 tol-pal system protei 99.4 4.5E-11 9.7E-16 87.9 15.2 107 139-245 141-254 (263)
158 KOG4648 Uncharacterized conser 99.4 4.2E-13 9.2E-18 98.4 4.3 230 11-246 101-339 (536)
159 KOG0543 FKBP-type peptidyl-pro 99.4 1.8E-11 3.8E-16 92.1 11.9 116 142-257 210-340 (397)
160 KOG1070 rRNA processing protei 99.3 3.9E-10 8.5E-15 96.3 20.4 215 24-238 1441-1664(1710)
161 PRK10803 tol-pal system protei 99.3 2.3E-11 4.9E-16 89.4 11.6 101 9-109 144-251 (263)
162 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 1.2E-10 2.7E-15 89.9 14.8 120 113-235 176-295 (395)
163 PRK15331 chaperone protein Sic 99.3 2.5E-11 5.4E-16 80.7 9.2 94 10-103 40-133 (165)
164 COG4105 ComL DNA uptake lipopr 99.3 5.6E-09 1.2E-13 74.5 20.9 175 40-242 33-238 (254)
165 PF13512 TPR_18: Tetratricopep 99.3 8.5E-11 1.8E-15 76.5 10.6 88 3-90 6-99 (142)
166 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 9.4E-11 2E-15 90.6 12.8 117 144-263 173-289 (395)
167 KOG1941 Acetylcholine receptor 99.3 7.2E-10 1.6E-14 82.3 16.6 230 8-237 7-275 (518)
168 KOG0543 FKBP-type peptidyl-pro 99.3 1.6E-10 3.4E-15 87.0 13.5 100 140-239 257-357 (397)
169 PF14559 TPR_19: Tetratricopep 99.3 2E-11 4.4E-16 71.1 6.9 67 17-83 1-67 (68)
170 COG4785 NlpI Lipoprotein NlpI, 99.3 1E-09 2.2E-14 75.9 15.6 207 10-221 68-288 (297)
171 KOG1941 Acetylcholine receptor 99.3 1.4E-09 3E-14 80.9 17.3 248 13-260 49-349 (518)
172 COG0457 NrfG FOG: TPR repeat [ 99.3 8.2E-09 1.8E-13 75.9 22.3 197 10-206 62-268 (291)
173 KOG1070 rRNA processing protei 99.2 1.5E-09 3.3E-14 92.8 17.4 208 57-265 1440-1657(1710)
174 COG1729 Uncharacterized protei 99.2 1.1E-09 2.5E-14 78.7 13.8 105 143-247 144-254 (262)
175 PF14559 TPR_19: Tetratricopep 99.2 8.2E-11 1.8E-15 68.5 6.8 56 153-208 4-59 (68)
176 PF14938 SNAP: Soluble NSF att 99.2 4.2E-10 9.1E-15 84.7 12.2 202 12-239 40-268 (282)
177 COG1729 Uncharacterized protei 99.2 3.8E-10 8.2E-15 81.1 11.2 100 10-109 144-249 (262)
178 KOG2047 mRNA splicing factor [ 99.2 2.1E-08 4.6E-13 79.9 21.6 187 54-240 360-582 (835)
179 PF13371 TPR_9: Tetratricopept 99.2 1.4E-10 3.1E-15 68.5 7.4 65 182-246 3-67 (73)
180 KOG4234 TPR repeat-containing 99.2 7.1E-10 1.5E-14 75.6 10.9 105 143-247 98-207 (271)
181 KOG3081 Vesicle coat complex C 99.2 1.2E-08 2.5E-13 72.8 17.3 163 43-210 110-278 (299)
182 PF13371 TPR_9: Tetratricopept 99.2 3.2E-10 7E-15 67.0 8.3 70 14-83 2-71 (73)
183 PF12688 TPR_5: Tetratrico pep 99.2 1.9E-09 4E-14 69.2 12.0 96 141-236 2-103 (120)
184 PF12688 TPR_5: Tetratrico pep 99.2 1.5E-09 3.2E-14 69.7 11.4 99 76-202 2-103 (120)
185 KOG4648 Uncharacterized conser 99.1 8.6E-11 1.9E-15 86.5 4.8 195 44-247 100-306 (536)
186 COG4700 Uncharacterized protei 99.1 1.3E-08 2.9E-13 68.7 14.5 146 87-233 68-218 (251)
187 COG3898 Uncharacterized membra 99.1 1.9E-07 4E-12 70.5 21.9 242 12-260 125-381 (531)
188 PF13512 TPR_18: Tetratricopep 99.1 8.4E-09 1.8E-13 67.3 13.1 105 140-244 10-135 (142)
189 KOG2053 Mitochondrial inherita 99.1 4.6E-07 9.9E-12 75.0 24.4 226 15-241 17-259 (932)
190 KOG4234 TPR repeat-containing 99.1 5.4E-09 1.2E-13 71.4 11.0 105 113-217 102-211 (271)
191 KOG2047 mRNA splicing factor [ 99.0 8.7E-08 1.9E-12 76.5 18.3 189 12-200 392-612 (835)
192 COG4700 Uncharacterized protei 99.0 7.5E-08 1.6E-12 65.2 15.0 138 123-262 73-213 (251)
193 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.5E-09 5.4E-14 82.6 8.8 70 135-204 70-142 (453)
194 KOG1586 Protein required for f 99.0 5.7E-07 1.2E-11 63.2 18.5 62 146-207 160-228 (288)
195 PF06552 TOM20_plant: Plant sp 98.9 1.8E-08 4E-13 67.9 10.1 86 122-207 7-113 (186)
196 PF06552 TOM20_plant: Plant sp 98.9 6.9E-08 1.5E-12 65.2 12.6 102 57-182 7-122 (186)
197 PF13424 TPR_12: Tetratricopep 98.9 1.4E-09 3.1E-14 65.1 4.2 64 174-237 5-75 (78)
198 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 9E-09 1.9E-13 79.6 9.4 57 113-169 82-141 (453)
199 KOG4555 TPR repeat-containing 98.9 1.5E-07 3.3E-12 59.8 13.0 98 143-240 46-147 (175)
200 KOG2796 Uncharacterized conser 98.9 3.5E-06 7.6E-11 60.5 19.8 66 141-206 253-318 (366)
201 PF13424 TPR_12: Tetratricopep 98.9 3.7E-09 8E-14 63.3 4.1 67 137-203 2-75 (78)
202 KOG4555 TPR repeat-containing 98.8 3.6E-07 7.9E-12 58.1 12.7 94 13-106 49-146 (175)
203 KOG2053 Mitochondrial inherita 98.8 7.1E-06 1.5E-10 68.3 23.4 196 11-207 47-259 (932)
204 KOG2796 Uncharacterized conser 98.8 9.9E-07 2.1E-11 63.2 16.1 185 13-240 128-318 (366)
205 COG3898 Uncharacterized membra 98.8 1E-05 2.2E-10 61.5 21.4 245 11-262 88-349 (531)
206 KOG2471 TPR repeat-containing 98.8 9.4E-07 2E-11 68.7 15.7 120 142-262 511-675 (696)
207 KOG4642 Chaperone-dependent E3 98.8 2.3E-08 5E-13 70.2 6.4 95 12-106 15-109 (284)
208 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-06 5.1E-11 70.7 18.6 127 137-263 964-1166(1416)
209 KOG2610 Uncharacterized conser 98.8 4.7E-07 1E-11 67.1 13.3 154 82-235 110-274 (491)
210 KOG4642 Chaperone-dependent E3 98.8 3.7E-08 8E-13 69.2 7.2 90 113-202 17-106 (284)
211 PF13428 TPR_14: Tetratricopep 98.7 3.3E-08 7.1E-13 51.7 4.5 42 209-250 2-43 (44)
212 KOG2471 TPR repeat-containing 98.7 3.3E-07 7.2E-12 71.1 11.5 215 41-255 100-382 (696)
213 PF13428 TPR_14: Tetratricopep 98.7 6E-08 1.3E-12 50.7 5.2 42 42-83 2-43 (44)
214 KOG3617 WD40 and TPR repeat-co 98.7 1.1E-06 2.4E-11 72.6 14.4 204 19-237 740-996 (1416)
215 KOG1585 Protein required for f 98.7 9.2E-06 2E-10 57.7 16.9 208 23-231 9-250 (308)
216 PF04184 ST7: ST7 protein; In 98.7 1.3E-05 2.8E-10 62.8 19.3 189 46-244 173-382 (539)
217 KOG2610 Uncharacterized conser 98.6 5.9E-06 1.3E-10 61.5 15.5 163 46-208 108-283 (491)
218 PF05843 Suf: Suppressor of fo 98.6 4E-06 8.6E-11 63.1 15.1 121 122-242 17-141 (280)
219 KOG1585 Protein required for f 98.6 1.3E-05 2.9E-10 57.0 15.7 186 11-197 35-250 (308)
220 KOG0376 Serine-threonine phosp 98.6 1.3E-07 2.8E-12 73.2 6.1 105 147-251 11-115 (476)
221 PF13431 TPR_17: Tetratricopep 98.6 5.6E-08 1.2E-12 47.4 2.4 32 231-262 2-33 (34)
222 KOG0551 Hsp90 co-chaperone CNS 98.6 3E-06 6.5E-11 62.8 12.2 96 10-105 84-183 (390)
223 PF04184 ST7: ST7 protein; In 98.6 6.1E-05 1.3E-09 59.3 19.8 221 14-248 175-425 (539)
224 KOG0376 Serine-threonine phosp 98.5 1.1E-07 2.5E-12 73.5 4.9 101 12-112 9-109 (476)
225 KOG1586 Protein required for f 98.5 0.0001 2.2E-09 52.2 18.3 161 14-175 41-230 (288)
226 PF13431 TPR_17: Tetratricopep 98.5 9.1E-08 2E-12 46.6 2.5 32 197-228 2-33 (34)
227 KOG0545 Aryl-hydrocarbon recep 98.5 1.7E-06 3.7E-11 61.4 9.1 101 8-108 179-297 (329)
228 KOG0545 Aryl-hydrocarbon recep 98.5 2.5E-06 5.5E-11 60.5 9.9 104 140-243 178-299 (329)
229 PF05843 Suf: Suppressor of fo 98.5 6.4E-06 1.4E-10 62.0 12.9 134 43-207 3-140 (280)
230 PF10300 DUF3808: Protein of u 98.5 1.9E-05 4.1E-10 63.8 15.5 150 87-237 200-376 (468)
231 PF00515 TPR_1: Tetratricopept 98.4 3.6E-07 7.9E-12 44.7 3.7 32 209-240 2-33 (34)
232 PF07719 TPR_2: Tetratricopept 98.4 5.9E-07 1.3E-11 44.0 4.3 33 209-241 2-34 (34)
233 PF02259 FAT: FAT domain; Int 98.4 0.00026 5.6E-09 55.5 20.5 237 14-255 5-305 (352)
234 KOG0985 Vesicle coat protein c 98.4 6.1E-05 1.3E-09 64.1 17.1 89 12-105 1053-1163(1666)
235 PF00515 TPR_1: Tetratricopept 98.4 1.2E-06 2.5E-11 42.9 4.6 33 42-74 2-34 (34)
236 PF13281 DUF4071: Domain of un 98.4 0.00017 3.8E-09 55.6 17.7 174 13-209 147-340 (374)
237 PF10300 DUF3808: Protein of u 98.3 2E-05 4.4E-10 63.6 13.3 146 113-258 195-356 (468)
238 PF07719 TPR_2: Tetratricopept 98.3 1.6E-06 3.5E-11 42.4 4.5 33 42-74 2-34 (34)
239 PF07079 DUF1347: Protein of u 98.3 0.00076 1.6E-08 52.7 23.7 49 215-264 469-517 (549)
240 COG3118 Thioredoxin domain-con 98.3 0.00037 8.1E-09 51.4 18.0 126 44-170 137-266 (304)
241 KOG0530 Protein farnesyltransf 98.3 0.00023 5E-09 51.4 16.4 230 19-248 55-309 (318)
242 COG2976 Uncharacterized protei 98.3 0.00021 4.6E-09 49.3 15.5 116 124-241 70-192 (207)
243 PF03704 BTAD: Bacterial trans 98.3 6.4E-05 1.4E-09 50.8 12.4 90 147-236 13-124 (146)
244 KOG0530 Protein farnesyltransf 98.2 0.0003 6.5E-09 50.8 15.2 168 87-254 55-233 (318)
245 PF13281 DUF4071: Domain of un 98.2 0.00085 1.8E-08 52.0 18.6 169 43-242 143-339 (374)
246 KOG1550 Extracellular protein 98.2 0.00083 1.8E-08 55.8 19.6 223 23-254 228-518 (552)
247 COG3118 Thioredoxin domain-con 98.2 0.00018 4E-09 52.9 13.7 146 113-259 141-289 (304)
248 PF03704 BTAD: Bacterial trans 98.2 0.0003 6.4E-09 47.6 14.1 63 140-202 62-124 (146)
249 KOG1308 Hsp70-interacting prot 98.1 1.9E-06 4.1E-11 64.1 3.2 94 147-240 121-214 (377)
250 KOG4507 Uncharacterized conser 98.1 7.3E-05 1.6E-09 59.9 11.9 102 152-253 619-721 (886)
251 KOG1914 mRNA cleavage and poly 98.1 0.0026 5.6E-08 51.0 21.6 212 28-239 266-503 (656)
252 KOG0551 Hsp90 co-chaperone CNS 98.1 3.9E-05 8.4E-10 57.1 9.7 97 142-238 83-183 (390)
253 COG2976 Uncharacterized protei 98.1 0.00042 9E-09 47.9 13.6 101 77-206 91-191 (207)
254 PF13181 TPR_8: Tetratricopept 98.1 5.9E-06 1.3E-10 40.3 3.6 32 209-240 2-33 (34)
255 PF02259 FAT: FAT domain; Int 98.1 0.0032 6.9E-08 49.4 20.3 128 113-240 153-341 (352)
256 KOG1914 mRNA cleavage and poly 98.0 0.0049 1.1E-07 49.5 22.7 67 2-70 16-82 (656)
257 PF04910 Tcf25: Transcriptiona 98.0 0.0011 2.3E-08 51.8 16.0 99 142-240 105-225 (360)
258 PF08631 SPO22: Meiosis protei 98.0 0.0033 7.2E-08 47.5 22.2 218 17-235 3-273 (278)
259 KOG1308 Hsp70-interacting prot 98.0 3.2E-06 6.9E-11 62.9 1.7 85 52-136 125-212 (377)
260 KOG1550 Extracellular protein 98.0 0.0015 3.3E-08 54.3 17.3 213 21-240 263-541 (552)
261 PF08424 NRDE-2: NRDE-2, neces 97.9 0.0052 1.1E-07 47.5 18.2 116 123-238 48-184 (321)
262 PF13181 TPR_8: Tetratricopept 97.9 2.7E-05 5.9E-10 37.9 3.9 32 42-73 2-33 (34)
263 PF08424 NRDE-2: NRDE-2, neces 97.9 0.00086 1.9E-08 51.7 13.7 144 28-171 6-185 (321)
264 KOG1258 mRNA processing protei 97.9 0.0089 1.9E-07 48.6 23.7 121 142-262 299-420 (577)
265 KOG2300 Uncharacterized conser 97.9 0.0041 8.9E-08 49.2 16.9 202 53-257 287-540 (629)
266 COG2909 MalT ATP-dependent tra 97.9 0.011 2.3E-07 50.4 20.3 224 11-234 419-685 (894)
267 KOG2300 Uncharacterized conser 97.8 0.0075 1.6E-07 47.8 17.1 211 19-232 287-551 (629)
268 PF10345 Cohesin_load: Cohesin 97.8 0.0085 1.8E-07 50.7 18.9 255 10-265 62-427 (608)
269 PF04781 DUF627: Protein of un 97.8 0.00075 1.6E-08 42.2 9.4 92 13-104 2-107 (111)
270 PF13174 TPR_6: Tetratricopept 97.8 5.5E-05 1.2E-09 36.5 3.7 31 210-240 2-32 (33)
271 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.0027 6E-08 49.8 14.1 210 28-240 289-534 (660)
272 PF13174 TPR_6: Tetratricopept 97.7 7.6E-05 1.6E-09 35.9 3.8 31 43-73 2-32 (33)
273 KOG3616 Selective LIM binding 97.7 0.0026 5.6E-08 53.1 14.2 205 14-236 668-910 (1636)
274 KOG4507 Uncharacterized conser 97.7 0.00085 1.8E-08 54.2 11.0 103 113-215 614-717 (886)
275 COG0790 FOG: TPR repeat, SEL1 97.7 0.013 2.7E-07 44.8 23.4 185 17-241 51-270 (292)
276 KOG0985 Vesicle coat protein c 97.7 0.0084 1.8E-07 51.9 16.8 160 73-254 1102-1261(1666)
277 KOG3824 Huntingtin interacting 97.7 0.00017 3.7E-09 53.4 6.4 75 11-85 120-194 (472)
278 PF09613 HrpB1_HrpK: Bacterial 97.7 0.0021 4.6E-08 43.3 10.9 83 142-224 12-94 (160)
279 KOG2396 HAT (Half-A-TPR) repea 97.7 0.0015 3.3E-08 51.6 11.7 93 122-214 87-180 (568)
280 PRK10941 hypothetical protein; 97.7 0.00091 2E-08 49.7 10.2 72 176-247 183-254 (269)
281 PF13176 TPR_7: Tetratricopept 97.7 8.3E-05 1.8E-09 36.7 3.3 26 211-236 2-27 (36)
282 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00055 1.2E-08 36.9 5.9 38 210-247 3-40 (53)
283 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0026 5.7E-08 42.8 10.1 84 175-258 11-94 (160)
284 PF04781 DUF627: Protein of un 97.5 0.0022 4.9E-08 40.1 9.1 91 147-237 3-107 (111)
285 KOG2396 HAT (Half-A-TPR) repea 97.5 0.004 8.7E-08 49.4 12.4 92 91-182 87-182 (568)
286 PF13176 TPR_7: Tetratricopept 97.5 0.00021 4.6E-09 35.2 3.6 26 44-69 2-27 (36)
287 PRK10941 hypothetical protein; 97.5 0.0028 6E-08 47.2 10.9 77 141-217 182-258 (269)
288 KOG3824 Huntingtin interacting 97.5 0.00048 1E-08 51.1 6.7 111 144-254 120-235 (472)
289 PF14561 TPR_20: Tetratricopep 97.5 0.0042 9.1E-08 37.9 9.8 64 126-189 8-73 (90)
290 PF14561 TPR_20: Tetratricopep 97.5 0.0041 8.9E-08 37.9 9.6 66 159-224 7-74 (90)
291 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.00075 1.6E-08 36.3 5.6 40 42-81 2-41 (53)
292 KOG0890 Protein kinase of the 97.5 0.044 9.4E-07 51.8 19.5 114 139-254 1669-1801(2382)
293 KOG3616 Selective LIM binding 97.5 0.023 5.1E-07 47.7 16.3 77 145-231 770-847 (1636)
294 KOG1258 mRNA processing protei 97.4 0.046 9.9E-07 44.7 18.7 180 42-222 298-489 (577)
295 PF04910 Tcf25: Transcriptiona 97.4 0.036 7.7E-07 43.5 16.6 130 129-258 29-194 (360)
296 smart00028 TPR Tetratricopepti 97.4 0.00041 8.9E-09 32.8 3.8 31 210-240 3-33 (34)
297 PF07079 DUF1347: Protein of u 97.3 0.05 1.1E-06 43.1 18.7 183 49-234 306-521 (549)
298 COG3914 Spy Predicted O-linked 97.3 0.013 2.9E-07 47.5 13.2 127 128-254 53-188 (620)
299 KOG2041 WD40 repeat protein [G 97.3 0.0045 9.7E-08 51.3 10.7 194 16-233 672-877 (1189)
300 PRK15180 Vi polysaccharide bio 97.3 0.0023 5E-08 50.6 8.7 126 116-241 299-424 (831)
301 TIGR02561 HrpB1_HrpK type III 97.3 0.0045 9.8E-08 41.0 8.7 76 148-223 18-93 (153)
302 KOG2041 WD40 repeat protein [G 97.3 0.027 5.8E-07 47.0 14.7 25 175-199 797-821 (1189)
303 COG0790 FOG: TPR repeat, SEL1 97.3 0.05 1.1E-06 41.5 20.2 147 11-188 77-236 (292)
304 KOG1464 COP9 signalosome, subu 97.3 0.044 9.6E-07 40.4 17.2 185 19-203 39-260 (440)
305 PRK15180 Vi polysaccharide bio 97.2 0.009 1.9E-07 47.5 11.1 123 16-138 298-423 (831)
306 COG2909 MalT ATP-dependent tra 97.2 0.13 2.7E-06 44.3 22.2 197 41-237 415-647 (894)
307 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.035 7.5E-07 43.9 13.7 200 62-261 289-521 (660)
308 smart00028 TPR Tetratricopepti 97.2 0.00094 2E-08 31.5 3.7 31 176-206 3-33 (34)
309 COG5191 Uncharacterized conser 97.1 0.0017 3.7E-08 48.3 6.0 85 129-213 96-181 (435)
310 PF08631 SPO22: Meiosis protei 97.1 0.074 1.6E-06 40.3 19.6 191 10-201 38-273 (278)
311 PF12968 DUF3856: Domain of Un 97.1 0.03 6.5E-07 35.6 11.4 91 147-237 16-129 (144)
312 PF09986 DUF2225: Uncharacteri 97.1 0.018 3.9E-07 41.5 10.8 99 152-250 89-208 (214)
313 PF09986 DUF2225: Uncharacteri 97.1 0.027 5.9E-07 40.6 11.6 95 52-170 88-195 (214)
314 COG4976 Predicted methyltransf 97.0 0.0013 2.9E-08 46.7 4.6 59 149-207 4-62 (287)
315 KOG3783 Uncharacterized conser 97.0 0.098 2.1E-06 42.3 15.2 66 176-241 451-524 (546)
316 TIGR02561 HrpB1_HrpK type III 97.0 0.017 3.8E-07 38.3 9.3 81 178-258 14-94 (153)
317 KOG3364 Membrane protein invol 97.0 0.034 7.3E-07 36.3 10.1 71 175-245 33-108 (149)
318 PF12968 DUF3856: Domain of Un 97.0 0.041 8.9E-07 35.0 11.9 95 51-169 19-129 (144)
319 KOG1310 WD40 repeat protein [G 97.0 0.0045 9.7E-08 49.6 7.3 90 152-241 386-478 (758)
320 KOG0529 Protein geranylgeranyl 97.0 0.12 2.7E-06 40.3 15.8 176 58-252 46-239 (421)
321 COG4976 Predicted methyltransf 96.9 0.0018 3.9E-08 46.0 4.6 61 114-174 3-63 (287)
322 PF04190 DUF410: Protein of un 96.9 0.11 2.4E-06 38.9 16.9 119 138-256 88-242 (260)
323 PRK13184 pknD serine/threonine 96.9 0.17 3.7E-06 44.7 16.8 101 11-112 479-589 (932)
324 COG5191 Uncharacterized conser 96.9 0.0034 7.3E-08 46.8 5.7 77 104-180 102-182 (435)
325 PF10579 Rapsyn_N: Rapsyn N-te 96.8 0.012 2.6E-07 34.3 6.6 61 10-70 9-72 (80)
326 PF10345 Cohesin_load: Cohesin 96.8 0.26 5.6E-06 42.0 22.5 214 23-237 37-330 (608)
327 KOG1464 COP9 signalosome, subu 96.8 0.12 2.6E-06 38.2 13.3 204 53-256 39-286 (440)
328 COG4649 Uncharacterized protei 96.8 0.084 1.8E-06 36.2 15.5 157 84-254 48-212 (221)
329 PF10602 RPN7: 26S proteasome 96.8 0.042 9.1E-07 38.4 10.6 99 140-238 36-143 (177)
330 KOG4814 Uncharacterized conser 96.8 0.25 5.3E-06 41.1 17.2 94 11-104 358-457 (872)
331 KOG1538 Uncharacterized conser 96.7 0.19 4.2E-06 41.9 14.8 216 7-234 585-830 (1081)
332 KOG1310 WD40 repeat protein [G 96.7 0.01 2.2E-07 47.7 7.4 100 13-112 380-482 (758)
333 KOG3364 Membrane protein invol 96.7 0.085 1.8E-06 34.5 10.7 74 140-213 32-110 (149)
334 COG4649 Uncharacterized protei 96.6 0.13 2.8E-06 35.4 13.8 106 113-219 101-211 (221)
335 PF10602 RPN7: 26S proteasome 96.5 0.028 6.1E-07 39.2 8.2 104 42-170 37-143 (177)
336 PF13374 TPR_10: Tetratricopep 96.4 0.0076 1.6E-07 30.5 3.8 29 209-237 3-31 (42)
337 COG3914 Spy Predicted O-linked 96.3 0.27 5.9E-06 40.4 13.4 128 55-182 45-184 (620)
338 PF11207 DUF2989: Protein of u 96.3 0.23 4.9E-06 35.1 13.0 71 157-228 123-198 (203)
339 KOG1839 Uncharacterized protei 96.2 0.14 3E-06 45.9 12.2 169 44-236 935-1127(1236)
340 KOG1839 Uncharacterized protei 96.2 0.067 1.5E-06 47.8 10.2 171 10-203 935-1128(1236)
341 PF13374 TPR_10: Tetratricopep 96.2 0.013 2.9E-07 29.6 3.9 29 175-203 3-31 (42)
342 KOG4814 Uncharacterized conser 96.2 0.64 1.4E-05 38.9 19.6 95 142-236 356-456 (872)
343 COG2912 Uncharacterized conser 96.1 0.077 1.7E-06 39.2 8.7 69 178-246 185-253 (269)
344 KOG2581 26S proteasome regulat 96.1 0.47 1E-05 37.3 13.1 103 140-242 169-281 (493)
345 KOG3783 Uncharacterized conser 96.1 0.41 9E-06 39.0 13.2 81 24-106 250-334 (546)
346 PF15015 NYD-SP12_N: Spermatog 95.9 0.072 1.6E-06 41.8 8.2 91 11-101 180-288 (569)
347 COG2912 Uncharacterized conser 95.9 0.12 2.6E-06 38.3 8.9 73 143-215 184-256 (269)
348 PF12862 Apc5: Anaphase-promot 95.9 0.085 1.8E-06 32.5 7.1 57 16-72 7-72 (94)
349 PF07720 TPR_3: Tetratricopept 95.8 0.049 1.1E-06 26.6 4.6 31 42-72 2-34 (36)
350 PF04053 Coatomer_WDAD: Coatom 95.8 0.85 1.8E-05 37.1 15.8 84 137-233 344-427 (443)
351 PF07720 TPR_3: Tetratricopept 95.8 0.038 8.3E-07 27.0 4.2 30 210-239 3-34 (36)
352 PF04053 Coatomer_WDAD: Coatom 95.7 0.37 7.9E-06 39.1 11.9 81 139-235 320-400 (443)
353 KOG1463 26S proteasome regulat 95.7 0.66 1.4E-05 35.6 18.7 230 10-239 7-318 (411)
354 PRK13184 pknD serine/threonine 95.7 0.16 3.5E-06 44.9 10.3 97 147-244 482-588 (932)
355 KOG2422 Uncharacterized conser 95.7 1 2.2E-05 37.2 17.5 170 54-239 251-450 (665)
356 PF15015 NYD-SP12_N: Spermatog 95.6 0.13 2.9E-06 40.4 8.5 58 177-234 231-288 (569)
357 PF12862 Apc5: Anaphase-promot 95.6 0.075 1.6E-06 32.8 6.0 53 151-203 9-70 (94)
358 KOG1538 Uncharacterized conser 95.6 0.23 4.9E-06 41.5 10.0 230 14-263 563-825 (1081)
359 COG1747 Uncharacterized N-term 95.5 1.1 2.3E-05 36.7 20.1 75 26-103 85-159 (711)
360 PF07721 TPR_4: Tetratricopept 95.5 0.024 5.3E-07 25.4 2.7 22 210-231 3-24 (26)
361 COG3629 DnrI DNA-binding trans 95.5 0.16 3.5E-06 38.1 8.4 63 140-202 153-215 (280)
362 COG5159 RPN6 26S proteasome re 95.3 0.85 1.8E-05 34.3 18.8 205 8-237 4-235 (421)
363 PF10373 EST1_DNA_bind: Est1 D 95.3 0.1 2.3E-06 39.4 7.3 62 159-220 1-62 (278)
364 PF07721 TPR_4: Tetratricopept 95.2 0.039 8.5E-07 24.7 2.9 22 43-64 3-24 (26)
365 PF10516 SHNi-TPR: SHNi-TPR; 95.0 0.062 1.3E-06 26.6 3.5 29 209-237 2-30 (38)
366 PRK11619 lytic murein transgly 94.9 2.2 4.8E-05 36.7 20.2 32 72-103 126-157 (644)
367 PF10579 Rapsyn_N: Rapsyn N-te 94.9 0.4 8.7E-06 28.1 7.2 46 151-196 17-65 (80)
368 KOG0529 Protein geranylgeranyl 94.8 1.5 3.3E-05 34.6 17.2 100 155-254 90-195 (421)
369 PF10373 EST1_DNA_bind: Est1 D 94.8 0.19 4E-06 38.0 7.5 62 125-186 1-62 (278)
370 COG3629 DnrI DNA-binding trans 94.6 1.4 3.1E-05 33.2 15.5 79 156-236 137-215 (280)
371 PF10516 SHNi-TPR: SHNi-TPR; 94.6 0.089 1.9E-06 26.1 3.4 29 175-203 2-30 (38)
372 COG3947 Response regulator con 94.4 0.28 6.1E-06 36.7 7.0 59 176-234 281-339 (361)
373 KOG0890 Protein kinase of the 94.3 5.9 0.00013 38.8 17.5 53 208-262 1670-1722(2382)
374 COG3947 Response regulator con 93.7 0.46 1E-05 35.7 7.0 55 209-263 280-334 (361)
375 smart00386 HAT HAT (Half-A-TPR 93.7 0.3 6.6E-06 22.7 4.4 29 21-49 1-29 (33)
376 COG4455 ImpE Protein of avirul 93.7 0.97 2.1E-05 32.6 8.2 62 14-75 8-69 (273)
377 smart00386 HAT HAT (Half-A-TPR 93.7 0.29 6.3E-06 22.7 4.3 25 156-180 3-27 (33)
378 COG5187 RPN7 26S proteasome re 93.5 2.5 5.5E-05 31.9 12.1 126 11-136 79-222 (412)
379 PF11207 DUF2989: Protein of u 93.4 2 4.4E-05 30.5 13.2 75 186-261 118-197 (203)
380 KOG3807 Predicted membrane pro 93.2 3.1 6.7E-05 32.2 16.0 56 13-70 190-245 (556)
381 TIGR03504 FimV_Cterm FimV C-te 93.2 0.24 5.2E-06 25.5 3.6 25 11-35 3-27 (44)
382 COG4941 Predicted RNA polymera 92.9 3.5 7.6E-05 31.9 17.6 183 56-248 211-405 (415)
383 KOG0546 HSP90 co-chaperone CPR 92.8 0.2 4.4E-06 38.4 4.2 107 147-253 229-354 (372)
384 PF12854 PPR_1: PPR repeat 92.8 0.39 8.5E-06 23.0 3.9 26 140-165 7-32 (34)
385 PF10255 Paf67: RNA polymerase 92.6 0.32 6.8E-06 38.7 5.2 61 142-202 124-192 (404)
386 TIGR03504 FimV_Cterm FimV C-te 92.4 0.4 8.6E-06 24.7 3.8 26 45-70 3-28 (44)
387 PF12854 PPR_1: PPR repeat 92.3 0.46 1E-05 22.8 3.8 26 174-199 7-32 (34)
388 PF14863 Alkyl_sulf_dimr: Alky 92.3 0.48 1E-05 31.7 5.1 53 40-92 69-121 (141)
389 KOG2114 Vacuolar assembly/sort 92.1 6 0.00013 34.6 12.1 52 181-236 497-549 (933)
390 KOG0128 RNA-binding protein SA 92.0 7.9 0.00017 33.8 13.3 206 32-237 303-526 (881)
391 KOG2422 Uncharacterized conser 91.8 6.8 0.00015 32.7 17.4 50 20-69 251-312 (665)
392 PF09670 Cas_Cas02710: CRISPR- 91.8 5.7 0.00012 31.8 11.9 60 11-70 135-198 (379)
393 KOG3807 Predicted membrane pro 91.8 5 0.00011 31.1 18.0 191 46-245 189-399 (556)
394 KOG0128 RNA-binding protein SA 91.4 9.4 0.0002 33.4 19.9 147 23-169 95-260 (881)
395 PF13041 PPR_2: PPR repeat fam 91.3 1.2 2.6E-05 23.4 5.2 28 209-236 4-31 (50)
396 PF11817 Foie-gras_1: Foie gra 91.2 4.9 0.00011 29.9 15.8 59 175-233 179-243 (247)
397 smart00299 CLH Clathrin heavy 90.7 3.5 7.6E-05 27.4 12.4 32 55-86 21-52 (140)
398 PF11817 Foie-gras_1: Foie gra 90.6 3.5 7.5E-05 30.7 8.7 80 122-201 154-245 (247)
399 PF10255 Paf67: RNA polymerase 90.5 0.72 1.6E-05 36.8 5.2 62 43-104 124-193 (404)
400 COG5536 BET4 Protein prenyltra 90.4 6.2 0.00013 29.7 10.4 170 59-251 50-236 (328)
401 PF04190 DUF410: Protein of un 90.4 6.2 0.00014 29.7 17.0 192 13-223 16-243 (260)
402 PF13041 PPR_2: PPR repeat fam 90.4 1.6 3.5E-05 22.9 6.3 29 141-169 4-32 (50)
403 PF12739 TRAPPC-Trs85: ER-Golg 90.3 8.6 0.00019 31.3 15.0 180 43-240 210-402 (414)
404 KOG0276 Vesicle coat complex C 90.3 3.5 7.6E-05 34.6 8.8 30 40-69 665-694 (794)
405 PF09797 NatB_MDM20: N-acetylt 89.7 4.1 8.9E-05 32.4 9.0 48 119-166 196-243 (365)
406 PF01535 PPR: PPR repeat; Int 89.7 0.74 1.6E-05 21.0 3.2 26 211-236 3-28 (31)
407 KOG1463 26S proteasome regulat 89.4 8.6 0.00019 29.9 14.7 161 46-206 133-319 (411)
408 PF14863 Alkyl_sulf_dimr: Alky 89.3 2 4.4E-05 28.7 5.9 48 10-57 73-120 (141)
409 KOG2063 Vacuolar assembly/sort 89.0 17 0.00036 32.6 17.6 159 44-202 507-712 (877)
410 COG5159 RPN6 26S proteasome re 88.7 8.8 0.00019 29.2 12.7 167 45-236 7-193 (421)
411 KOG4014 Uncharacterized conser 88.5 6.8 0.00015 27.6 12.9 174 21-237 49-233 (248)
412 PF09205 DUF1955: Domain of un 88.5 5.4 0.00012 26.4 7.2 52 52-103 97-148 (161)
413 COG4941 Predicted RNA polymera 88.4 10 0.00022 29.5 13.9 184 21-214 210-405 (415)
414 PF09670 Cas_Cas02710: CRISPR- 88.3 12 0.00025 30.1 11.0 55 115-169 140-198 (379)
415 cd02682 MIT_AAA_Arch MIT: doma 88.3 3.6 7.8E-05 24.1 6.4 36 82-141 13-48 (75)
416 smart00299 CLH Clathrin heavy 88.2 5.7 0.00012 26.4 13.6 116 119-253 20-136 (140)
417 PHA02537 M terminase endonucle 87.5 2.7 5.8E-05 30.8 6.0 45 209-254 170-223 (230)
418 PF11846 DUF3366: Domain of un 86.8 5 0.00011 28.5 7.2 44 127-171 132-175 (193)
419 PRK11619 lytic murein transgly 86.7 20 0.00044 31.1 20.7 55 181-235 319-373 (644)
420 KOG2062 26S proteasome regulat 86.7 21 0.00045 31.2 11.3 26 42-67 60-85 (929)
421 KOG2581 26S proteasome regulat 86.5 15 0.00033 29.4 15.7 132 15-173 134-280 (493)
422 TIGR00756 PPR pentatricopeptid 86.4 2.2 4.8E-05 19.8 3.8 26 143-168 3-28 (35)
423 PF00244 14-3-3: 14-3-3 protei 85.9 12 0.00026 27.7 15.0 58 10-67 4-63 (236)
424 cd02682 MIT_AAA_Arch MIT: doma 85.9 2.7 5.9E-05 24.6 4.3 25 177-201 9-33 (75)
425 KOG4151 Myosin assembly protei 85.9 5.8 0.00013 34.3 7.8 98 147-244 60-163 (748)
426 PF11846 DUF3366: Domain of un 85.8 4.2 9E-05 28.9 6.3 46 193-239 130-175 (193)
427 KOG0276 Vesicle coat complex C 85.8 13 0.00027 31.5 9.4 80 150-234 647-747 (794)
428 KOG0546 HSP90 co-chaperone CPR 85.3 1.2 2.5E-05 34.5 3.3 70 13-82 281-350 (372)
429 cd02680 MIT_calpain7_2 MIT: do 85.2 2.3 5E-05 24.9 3.8 17 54-70 19-35 (75)
430 COG1747 Uncharacterized N-term 85.1 21 0.00045 29.8 19.2 90 77-168 68-159 (711)
431 PF09797 NatB_MDM20: N-acetylt 84.7 4.3 9.4E-05 32.3 6.5 47 154-200 197-243 (365)
432 COG4455 ImpE Protein of avirul 84.3 14 0.0003 27.0 12.6 61 114-174 9-69 (273)
433 KOG0687 26S proteasome regulat 83.9 18 0.0004 28.1 11.5 96 41-136 104-211 (393)
434 PF07219 HemY_N: HemY protein 83.7 5.7 0.00012 25.2 5.6 46 44-89 62-107 (108)
435 PF13812 PPR_3: Pentatricopept 82.4 3.7 8.1E-05 19.0 3.8 27 210-236 3-29 (34)
436 PF00244 14-3-3: 14-3-3 protei 82.3 18 0.00039 26.8 14.3 59 44-102 4-64 (236)
437 KOG0686 COP9 signalosome, subu 82.0 25 0.00054 28.3 12.2 92 12-103 155-257 (466)
438 PF10952 DUF2753: Protein of u 81.3 12 0.00026 24.3 6.1 25 210-234 52-76 (140)
439 KOG4279 Serine/threonine prote 81.3 33 0.00071 30.2 10.2 55 20-74 256-320 (1226)
440 PHA02537 M terminase endonucle 80.8 13 0.00029 27.3 7.1 33 78-110 86-118 (230)
441 PF13226 DUF4034: Domain of un 80.7 23 0.00049 27.0 10.2 111 114-224 8-149 (277)
442 KOG1920 IkappaB kinase complex 80.7 21 0.00045 32.9 9.3 24 144-167 1003-1026(1265)
443 cd02683 MIT_1 MIT: domain cont 79.4 10 0.00023 22.3 8.0 13 87-99 18-30 (77)
444 PF05053 Menin: Menin; InterP 78.9 39 0.00084 28.6 10.1 45 192-236 297-346 (618)
445 KOG0687 26S proteasome regulat 77.6 32 0.00069 26.9 12.4 100 140-239 104-212 (393)
446 KOG2114 Vacuolar assembly/sort 77.5 23 0.00051 31.3 8.4 55 114-169 342-397 (933)
447 cd00280 TRFH Telomeric Repeat 77.5 22 0.00049 25.1 7.8 67 23-90 85-159 (200)
448 KOG0686 COP9 signalosome, subu 77.3 37 0.00079 27.4 14.4 95 141-235 151-256 (466)
449 smart00101 14_3_3 14-3-3 homol 77.0 28 0.00061 26.0 13.5 159 78-236 4-199 (244)
450 PF13226 DUF4034: Domain of un 76.8 31 0.00067 26.3 9.9 110 83-192 8-151 (277)
451 PF04212 MIT: MIT (microtubule 76.3 6.1 0.00013 22.5 3.6 23 214-236 11-33 (69)
452 COG3014 Uncharacterized protei 76.2 36 0.00078 26.8 14.9 77 28-104 42-154 (449)
453 PF12753 Nro1: Nuclear pore co 76.1 6.1 0.00013 31.4 4.5 46 190-237 334-391 (404)
454 TIGR02710 CRISPR-associated pr 75.9 39 0.00085 27.1 9.2 55 12-66 135-196 (380)
455 KOG2063 Vacuolar assembly/sort 75.6 63 0.0014 29.3 15.4 159 10-168 507-712 (877)
456 PRK15490 Vi polysaccharide bio 75.0 40 0.00086 28.8 9.0 75 122-198 24-98 (578)
457 PF04090 RNA_pol_I_TF: RNA pol 74.9 28 0.00062 25.0 10.8 59 142-200 43-102 (199)
458 PF10952 DUF2753: Protein of u 74.7 21 0.00045 23.3 6.5 60 143-202 4-78 (140)
459 PRK15490 Vi polysaccharide bio 74.5 24 0.00053 30.0 7.7 75 22-98 23-97 (578)
460 PF14929 TAF1_subA: TAF RNA Po 74.5 53 0.0012 27.9 16.6 155 90-255 299-468 (547)
461 PF04212 MIT: MIT (microtubule 74.4 6.5 0.00014 22.4 3.4 20 14-33 12-31 (69)
462 PRK12798 chemotaxis protein; R 74.2 45 0.00098 27.0 17.6 192 41-233 112-320 (421)
463 PF14929 TAF1_subA: TAF RNA Po 73.8 56 0.0012 27.8 14.1 130 86-219 320-466 (547)
464 PF04097 Nic96: Nup93/Nic96; 73.7 60 0.0013 28.2 12.8 24 217-241 514-537 (613)
465 PF12739 TRAPPC-Trs85: ER-Golg 72.8 51 0.0011 26.9 14.9 26 12-37 213-238 (414)
466 PF01239 PPTA: Protein prenylt 72.5 8.3 0.00018 17.7 4.0 27 228-254 3-29 (31)
467 COG5187 RPN7 26S proteasome re 72.0 43 0.00093 25.8 14.8 100 140-239 115-223 (412)
468 PF04348 LppC: LppC putative l 71.9 1.2 2.7E-05 37.3 0.0 89 11-99 28-122 (536)
469 cd02677 MIT_SNX15 MIT: domain 71.7 8.2 0.00018 22.6 3.4 15 55-69 20-34 (75)
470 PF00637 Clathrin: Region in C 71.5 0.73 1.6E-05 30.8 -1.2 79 149-233 16-95 (143)
471 cd02681 MIT_calpain7_1 MIT: do 71.1 8 0.00017 22.7 3.2 19 15-33 14-32 (76)
472 KOG4014 Uncharacterized conser 71.0 35 0.00075 24.3 13.2 114 122-253 89-211 (248)
473 PF02064 MAS20: MAS20 protein 71.0 12 0.00026 24.3 4.3 34 45-78 67-100 (121)
474 cd02681 MIT_calpain7_1 MIT: do 70.6 9.5 0.00021 22.4 3.5 16 220-235 18-33 (76)
475 PF02064 MAS20: MAS20 protein 70.0 19 0.00041 23.5 5.0 31 79-109 67-97 (121)
476 PF03745 DUF309: Domain of unk 69.4 18 0.00038 20.3 6.2 53 11-63 3-61 (62)
477 PF04348 LppC: LppC putative l 68.7 1.6 3.5E-05 36.6 0.0 58 42-99 25-85 (536)
478 PF02184 HAT: HAT (Half-A-TPR) 68.5 12 0.00025 17.8 3.5 25 224-249 3-27 (32)
479 smart00671 SEL1 Sel1-like repe 67.7 12 0.00025 17.5 4.2 27 43-69 3-33 (36)
480 PF12753 Nro1: Nuclear pore co 67.6 14 0.0003 29.5 4.7 32 156-189 334-365 (404)
481 PF06957 COPI_C: Coatomer (COP 67.0 60 0.0013 26.6 8.2 100 144-243 208-335 (422)
482 KOG4279 Serine/threonine prote 66.5 96 0.0021 27.6 12.4 166 40-207 200-399 (1226)
483 KOG4521 Nuclear pore complex, 64.0 1.3E+02 0.0028 28.3 15.0 183 41-239 920-1134(1480)
484 PF05053 Menin: Menin; InterP 63.0 96 0.0021 26.4 9.2 65 139-203 276-347 (618)
485 PF08238 Sel1: Sel1 repeat; I 62.3 17 0.00036 17.4 4.2 14 56-69 23-36 (39)
486 KOG4521 Nuclear pore complex, 62.2 1.4E+02 0.0031 28.1 11.1 166 74-261 919-1121(1480)
487 KOG2561 Adaptor protein NUB1, 62.1 88 0.0019 25.7 8.4 94 143-236 166-295 (568)
488 PF07219 HemY_N: HemY protein 62.0 38 0.00082 21.4 6.7 45 144-188 63-107 (108)
489 KOG4151 Myosin assembly protei 61.7 28 0.0006 30.5 5.7 96 47-142 59-163 (748)
490 KOG1920 IkappaB kinase complex 61.6 1.5E+02 0.0031 28.0 14.5 14 248-261 1005-1018(1265)
491 cd02679 MIT_spastin MIT: domai 61.6 17 0.00037 21.6 3.4 33 189-236 4-36 (79)
492 cd02678 MIT_VPS4 MIT: domain c 60.9 16 0.00035 21.3 3.3 12 24-35 4-15 (75)
493 PF00637 Clathrin: Region in C 60.9 6.9 0.00015 26.1 1.9 89 105-199 6-95 (143)
494 KOG1497 COP9 signalosome, subu 60.7 80 0.0017 24.7 9.2 92 141-233 104-209 (399)
495 PF14689 SPOB_a: Sensor_kinase 60.5 28 0.0006 19.4 4.2 29 140-168 23-51 (62)
496 smart00745 MIT Microtubule Int 59.9 17 0.00037 21.2 3.3 13 23-35 5-17 (77)
497 PRK12798 chemotaxis protein; R 59.7 96 0.0021 25.3 18.6 161 75-239 112-288 (421)
498 PF04840 Vps16_C: Vps16, C-ter 59.2 86 0.0019 24.6 18.1 236 7-263 26-283 (319)
499 KOG2758 Translation initiation 59.0 87 0.0019 24.6 15.1 167 37-203 125-317 (432)
500 KOG0567 HEAT repeat-containing 58.7 78 0.0017 24.0 15.5 96 137-236 166-261 (289)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1e-40 Score=256.59 Aligned_cols=257 Identities=22% Similarity=0.276 Sum_probs=232.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.|-.+|..+..+|+...|+..|+++++++|...++++++|.+|...+.+++|+.+|.+++...|++..++.++|.+|+.+
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 46678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
|..+-|+..|++++++.|..+..+ +..+...|+..+|..+|.+++.+.|+.+++..++|.++...|.+++|...|.+
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999988887 78888889999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
+++..|....++.++|.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|+.+|.+++..+|...+++
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcccccccC
Q 024618 246 QYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 246 ~~l~~~~~~~~~~~~A~~~~ 265 (265)
.+||.+|...|+..+|+..|
T Consensus 460 sNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hhHHHHhhccCCcHHHHHHH
Confidence 99999999999998888654
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-39 Score=247.47 Aligned_cols=255 Identities=19% Similarity=0.227 Sum_probs=246.2
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
-..|..+-..|+..+|..+|.++++..|....+|..+|-++...|+...|+..|+++++++|+.++++++||.+|...+.
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 45688888899999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
++.|+.+|.+++...|+..... +.+|..+|..+-|+..|+++++..|+.++++.++|..+...|+..+|..+|.+++
T Consensus 268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred chHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999999998887 8899999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
.+.|+.+++..++|.++..+|.+++|...|.++++..|..+.++.++|.+|.++|++++|+.+|+.++.+.|...+++.+
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccccC
Q 024618 248 LRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 248 l~~~~~~~~~~~~A~~~~ 265 (265)
+|..|..+|+...|+.+|
T Consensus 428 mGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred cchHHHHhhhHHHHHHHH
Confidence 999999999999988654
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.4e-34 Score=236.02 Aligned_cols=254 Identities=17% Similarity=0.156 Sum_probs=194.4
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
+..+|..++..|+|++|+..|++++...|+ +..+.++|.+|..+|++++|+..+.++++++|++..++..+|.++..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 346799999999999999999999999995 7789999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhc------------------------------CCCC-------------------------------
Q 024618 90 EQAAALKYLYGWLRH------------------------------HPKY------------------------------- 108 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~------------------------------~~~~------------------------------- 108 (265)
++++|+..+..+... .|..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 999998765433211 1110
Q ss_pred ------------------------------------------CCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHH
Q 024618 109 ------------------------------------------GTIA---PPELSDSLYYADVARLFVEAARMSPEDADVH 143 (265)
Q Consensus 109 ------------------------------------------~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 143 (265)
...+ +.++...|++++|+..+++++..+|.....+
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 368 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY 368 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 0000 3344456667777777777777777777777
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (265)
..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|.++..+|+
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 224 YEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 224 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+++|+..|+++++..|+++.++..+|.++...|++++|++.
T Consensus 449 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 449 IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 77777777777777777777777777777777777777654
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-32 Score=227.80 Aligned_cols=246 Identities=16% Similarity=0.166 Sum_probs=226.5
Q ss_pred cCChHHHHHHHHHHHHhC---CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHH
Q 024618 20 KGLLSEAVLALEAEVLKN---PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 96 (265)
.++|++|+..|++++... |....++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 468999999999999864 67778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618 97 YLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173 (265)
Q Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 173 (265)
.++++++.+|+++..+ |.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++..|++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999988777 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH------HHHHHH-HHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW------ANMGIS-YANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
+.++..+|.++...|++++|+..|++++.+.|.....+ ...+.. +...|++++|+..++++++++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999999999999999999988753322 233333 34479999999999999999999999999
Q ss_pred HHHHHHHHhCCcccccccC
Q 024618 247 YLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 247 ~l~~~~~~~~~~~~A~~~~ 265 (265)
.+|.++..+|++++|+..|
T Consensus 547 ~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHccCHHHHHHHH
Confidence 9999999999999998754
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.7e-32 Score=225.17 Aligned_cols=256 Identities=14% Similarity=0.074 Sum_probs=181.3
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.+..+|......|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.++...
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 34556677777778888888888877777777777777777777778888888888888777777777777777777777
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc-------------------------------------hhhhhhhhchHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA-------------------------------------PPELSDSLYYADVARLFVE 131 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~ 131 (265)
|++++|+..+.+++...|+....+ +..+...|++++|+..+++
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777766666544322 2344455666666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 132 AARMSPEDADVHIVLGVLYNLSRQYDK----AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
++..+|+++.++..+|.++...|++++ |+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|++
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 666667667777777777777777664 6677777777777777777777777777777777777777777777777
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+.++..+|.++...|++++|+..|++++..+|++...+..++.++...|++++|+..
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777776665555566667777777766654
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.5e-33 Score=214.96 Aligned_cols=252 Identities=17% Similarity=0.173 Sum_probs=223.4
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh------------------------
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE------------------------ 69 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------ 69 (265)
|......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 44444455566667766665555555566666667777777777776666666654
Q ss_pred ----------cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcC
Q 024618 70 ----------AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMS 136 (265)
Q Consensus 70 ----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~ 136 (265)
.+|+.|+.|..+|.||..+++++.|+++|+++++++|.+...+ |.-+.....++.|..+|++++..+
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 3567789999999999999999999999999999999987776 899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..+++|+.++|.++-..+..|.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 217 SYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+++.++++++|+..+++.-++.|+...++..+|.+|.++|+.+.|+..|
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 9999999999999999999999999999999999999999999887654
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=9e-32 Score=222.04 Aligned_cols=251 Identities=12% Similarity=-0.011 Sum_probs=216.6
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh------
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL------ 81 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 81 (265)
..++.+|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~ 190 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNK 190 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 45678899999999999999999999999999999999999999999999999999998888887766544332
Q ss_pred ----------------------------hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHH----HH
Q 024618 82 ----------------------------GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYAD----VA 126 (265)
Q Consensus 82 ----------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----a~ 126 (265)
+.++...|++++|+..+++++...|++...+ +..+...|++++ |+
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 3455566777778888888888887776555 888899999986 89
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
..++++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.
T Consensus 271 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 271 EHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHHhCCc
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN-----AWQYLRISLRYAGRY 258 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~ 258 (265)
++..+..+|.++...|++++|+..|+++++..|++.. +...+...+...+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc
Confidence 8877777899999999999999999999999998653 334444444444443
No 8
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=206.68 Aligned_cols=261 Identities=49% Similarity=0.791 Sum_probs=239.4
Q ss_pred CCCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh
Q 024618 1 MNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS 80 (265)
Q Consensus 1 ~np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 80 (265)
+||+.+.++-|..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..
T Consensus 279 ~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma 358 (579)
T KOG1125|consen 279 ENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA 358 (579)
T ss_pred cCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----------hhhhhhhhchHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 024618 81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----------PPELSDSLYYADVARLFVEAARMSP--EDADVHIVLGV 148 (265)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~ 148 (265)
||.+|...|.-.+|+.++.+.+...|...... .........+..-.+.|..+....| .++++...||.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 99999999999999999999999888765444 1133444556677788888888888 78999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
+|.-.|+|++|+.+|+.++...|++...|..+|-.+....+.++|+..|++|+++.|....+++++|.++..+|.|++|+
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC----------chhHHHHHHHHHHhCCcccc
Q 024618 229 RYYVRALAMNPKA----------DNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 229 ~~~~~a~~~~~~~----------~~~~~~l~~~~~~~~~~~~A 261 (265)
++|-.++.+.+.. ..+|..|-.++..+++.+-+
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 9999999986541 25888888888888887743
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-30 Score=225.67 Aligned_cols=255 Identities=22% Similarity=0.238 Sum_probs=205.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC----------------
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---------------- 73 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------- 73 (265)
+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 4455666666666666666666666666666666666666666666666666666666655555
Q ss_pred ------------------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHH
Q 024618 74 ------------------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAA 133 (265)
Q Consensus 74 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~ 133 (265)
++..+..+|.++...|++++|+..+++++...|+..... +.++...|++++|...+++++
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555566667777777777777777777777777663333 777788888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN 213 (265)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 213 (265)
+..|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..+++++...|+++..+..
T Consensus 764 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 842 (899)
T TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDT 842 (899)
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+|.++...|++++|+.+++++++.+|.++.++..++.++...|++++|+++|
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.7e-30 Score=226.08 Aligned_cols=252 Identities=21% Similarity=0.183 Sum_probs=172.0
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH--------------HH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE--------------VL 78 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~ 78 (265)
+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++.. ..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4777777888888888888888888888888888888888888888888888888877776532 11
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH-------
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV------- 148 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~------- 148 (265)
..+|.++...|++++|+..|+++++.+|++...+ +.++...|++++|+..|+++++.+|++..++..++.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 2335556666666666666666666666655444 566666666666666666666666665544433332
Q ss_pred -----------------------------------HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHH
Q 024618 149 -----------------------------------LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADA 193 (265)
Q Consensus 149 -----------------------------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 193 (265)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 233456666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCcch-----------------------------------------------------------------
Q 024618 194 ILAYQRALDLKPNYV----------------------------------------------------------------- 208 (265)
Q Consensus 194 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 208 (265)
+..+++++...|.++
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 666666665555433
Q ss_pred ---------hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 209 ---------RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 209 ---------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23445666677777888888888888888888888888888888888888777654
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=6.6e-30 Score=220.96 Aligned_cols=256 Identities=20% Similarity=0.215 Sum_probs=211.0
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..++..+..+...|++++|+..+++++...|.++.+|..+|.++...|++++|+..++++++..|.++.++..+|.++..
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCc-------------------------------------hhhhhhhhchHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIA-------------------------------------PPELSDSLYYADVARLFV 130 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~ 130 (265)
.|++++|+..++++++..|++...+ +.++...|++++|+..++
T Consensus 648 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999998854332 445556666666666666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
+++...|++ ..+..++.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++..|+++.+
T Consensus 728 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 728 KALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred HHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 666666665 5556666777777777777777777777777777777788888888888888888888888888877777
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+..+|.++...|+ .+|+.+++++++..|+++..+..+|.++...|++++|+++|
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887 77888888888888888888888888888888888777643
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=5.8e-30 Score=224.00 Aligned_cols=253 Identities=17% Similarity=0.112 Sum_probs=196.8
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh-------
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS------- 84 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~------- 84 (265)
..|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 4578888999999999999999999999999999999999999999999999999999999987766555444
Q ss_pred -----------------------------------hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHH
Q 024618 85 -----------------------------------HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVA 126 (265)
Q Consensus 85 -----------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~ 126 (265)
+...|++++|+..++++++.+|+++... +.++...|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3456888889999999999998887665 88888889999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH----------------------------------------
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA---------------------------------------- 166 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------------------------- 166 (265)
..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999888888888777666665555555555555544331
Q ss_pred HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|+++.++.
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 12356666666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCccccccc
Q 024618 247 YLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 247 ~l~~~~~~~~~~~~A~~~ 264 (265)
.+|.++...|++++|+++
T Consensus 676 ~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 777777777777777654
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.98 E-value=1.2e-29 Score=199.85 Aligned_cols=255 Identities=16% Similarity=0.075 Sum_probs=212.9
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVS 84 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~ 84 (265)
..+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 345678888889999999999999999999988899999999999999999999999888754322 3567888999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCH
Q 024618 85 HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----DVHIVLGVLYNLSRQY 156 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~ 156 (265)
+...|++++|+..|+++++..|.....+ +.++...|++++|+..++++++..|.+. ..+..+|.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999988877655444 7788888999999999999888777653 2456788888889999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
++|+..++++++..|++..++..+|.++...|++++|++.+++++..+|.+ ..++..++.++...|++++|+..+++++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999998888888888899999999999999999999998887765 4567788888999999999999999998
Q ss_pred hcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 236 AMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+..|+... ...++.++.+.|++++|+..
T Consensus 277 ~~~p~~~~-~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 277 EEYPGADL-LLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HhCCCchH-HHHHHHHHHHhCCHHHHHHH
Confidence 88887644 47888889999988888764
No 14
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1e-30 Score=202.87 Aligned_cols=222 Identities=20% Similarity=0.194 Sum_probs=202.7
Q ss_pred HHHHHHHHHhh--cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc----------------
Q 024618 43 GWRLLGIAHAE--NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH---------------- 104 (265)
Q Consensus 43 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------- 104 (265)
.+..+|..+.. .-+..+|+..|.+.-...++...++..+|..|+.++++++|.++|+.+-+.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 44455555544 446789999999977788888999999999999999999999999876544
Q ss_pred ------------------CCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 105 ------------------HPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 105 ------------------~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
+|+.|..| |.++..+++++.|+++|+++++++|+...++..+|.-+....++|.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 45555555 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
++++..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..+++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCccccccc
Q 024618 244 AWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 244 ~~~~l~~~~~~~~~~~~A~~~ 264 (265)
..+..+.++..++++++|+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHH
Confidence 999999999999999998753
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.97 E-value=2.4e-31 Score=199.79 Aligned_cols=256 Identities=22% Similarity=0.269 Sum_probs=124.7
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLK--NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
..+..|..++..|++++|+.++++.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 4567899999999999999999776554 488899999999999999999999999999999999999998888888 7
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMS--PEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
..+++++|+.+++++.+..++..... ..++...++++++...++++.... +.++..+..+|.++.+.|++++|+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887765433322 777889999999999999977655 67889999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
++++++.+|+++.+...++.++...|+++++.+.++......|+++..+..+|.++..+|++++|+.+++++++.+|+++
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCcccccccC
Q 024618 243 NAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
..+..+|.++...|+.++|.+++
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp HHHHHHHHHHT------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999998763
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.3e-29 Score=210.56 Aligned_cols=254 Identities=13% Similarity=0.026 Sum_probs=229.3
Q ss_pred CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
....++.+|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..+++++...|.+ ..+..+|.++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence 34456888999887 899999999999999999754 46667888889999999999999988776654 5578889999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh---hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS---LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
...|++++|+.+++++++..|........+.... |++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999988766555444445 9999999999999999997 99999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++.++|.++...|++++|+..++++++++|++.
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCcccccc
Q 024618 243 NAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.+....|.+.....+++.|.+
T Consensus 712 ~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 712 LITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 999999998888877766644
No 17
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-28 Score=184.13 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=199.5
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA 92 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 92 (265)
.|.+.+...++++|+..|+.+.+.+|-..+-.-...++++-.++-.+-.-..+.+..++.-.++...-+|..|...++.+
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 34555555555555555555555555555444455555555544444444444555555555666777788888888999
Q ss_pred HHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 93 AALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 93 ~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
+|+.+|+++++++|.....| |.-+...++...|+..|+++++++|.+..+|+.+|+.|..++-+.-|+-+|+++++.
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999988877 888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh-------cCCCCc
Q 024618 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA-------MNPKAD 242 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------~~~~~~ 242 (265)
.|+++..|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++ ..|+-.
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ 507 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETI 507 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 9999999999999999999999999999999988888888999999999999999999999999887 345455
Q ss_pred hhHHHHHHHHHHhCCcccccc
Q 024618 243 NAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.+...|+.-+.+.+++++|..
T Consensus 508 ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 508 KARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHH
Confidence 677778988999999888753
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-28 Score=183.62 Aligned_cols=254 Identities=17% Similarity=0.181 Sum_probs=227.1
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
.+|+.+++.|+|++||++|.++|+..|+.+..+.+++-||...|+|++.++...++++++|+...+++..+.++..+|++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH------------------HHHh--------------cCCCCC------------------------------
Q 024618 92 AAALKYLY------------------GWLR--------------HHPKYG------------------------------ 109 (265)
Q Consensus 92 ~~A~~~~~------------------~~~~--------------~~~~~~------------------------------ 109 (265)
++|+.-.. +.++ ..|..|
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 98765322 1111 011111
Q ss_pred ------------------------------------C--------------CchhhhhhhhchHHHHHHHHHHHhcCCCC
Q 024618 110 ------------------------------------T--------------IAPPELSDSLYYADVARLFVEAARMSPED 139 (265)
Q Consensus 110 ------------------------------------~--------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 139 (265)
. ..|..+...|+.-.|...+++++.++|..
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~ 359 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF 359 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc
Confidence 0 00444556677888888999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
...+..++.+|...++.++-...|.++..++|.++++|+..|.+++-.+++++|+.-|++++.++|++.-++..++.+.+
T Consensus 360 ~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 360 NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
++++++++...|+.+.+..|+.++++...|.++..++++++|++.|
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.97 E-value=2.5e-27 Score=186.80 Aligned_cols=255 Identities=15% Similarity=0.060 Sum_probs=221.8
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV 83 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 83 (265)
..++.+|..+...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|.++++..|.+..++..++.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~ 149 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 346778999999999999999999998754332 2467889999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCC--------chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618 84 SHTNELEQAAALKYLYGWLRHHPKYGTI--------APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155 (265)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (265)
++...|++++|+..++++++..|..... .+..+...|++++|+..++++++..|+...++..+|.++...|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999988875431 15667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 156 YDKAIESFQTALKLKPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+++|+..+++++..+|.+ ..++..++.++...|++++|+..++++++..|+.. ....++.++...|++++|+..++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999988876 46678899999999999999999999999999864 4488999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHH--hCCcccccc
Q 024618 235 LAMNPKADNAWQYLRISLRY--AGRYPNRGD 263 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~ 263 (265)
++..|++......++..+.. .|+.++|+.
T Consensus 309 l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 309 LRRHPSLRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HHhCcCHHHHHHHHHHhhhccCCccchhHHH
Confidence 99999987655444443322 346666654
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-27 Score=176.75 Aligned_cols=254 Identities=19% Similarity=0.187 Sum_probs=219.8
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLK-NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
-.+.++....+.++++.-++..+.. .|.++..-...|.+.....++++|+..|+.+.+.+|-..+-.-..+.+++-.++
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 3466666677888898888888887 688888888899999999999999999999999999766655555666555544
Q ss_pred HHHHHHHHHHHHhcCC---CCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 91 QAAALKYLYGWLRHHP---KYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
-.+-.-.-+.+..++. +.--+.|+.+...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 3333333344444443 3333349999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
+++|.+..+|+.+|+.|..++.+.=|+-+|++++...|+++..|..+|.||.++++.++|+++|++++.....+..++..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHhCCcccccccC
Q 024618 248 LRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 248 l~~~~~~~~~~~~A~~~~ 265 (265)
||.+|.++++.++|..+|
T Consensus 472 LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYY 489 (559)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 999999999999987654
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=178.71 Aligned_cols=244 Identities=17% Similarity=0.176 Sum_probs=196.6
Q ss_pred ChHHHHHHHHHHHHhC----CCC---------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 22 LLSEAVLALEAEVLKN----PEN---------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 22 ~~~~A~~~~~~~~~~~----~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.|..|...+.+..... ..+ ..++...|..++-.|+...|...|+.+|.++|.+...+..+|.+|...
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE 373 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh
Confidence 6777777776654322 112 446677788888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
++.++....|.++..++|++++.+ |++...++++++|+.-|++++.++|.+...+..++.+.++++++++++..|+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee 453 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEE 453 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877 88888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------chhhHHHHHHHHHh-cCCcHHHHHHHHHHHhcC
Q 024618 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------YVRAWANMGISYAN-QGMYEESVRYYVRALAMN 238 (265)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~ 238 (265)
+.+..|+.++++...|.++..++++++|++.|+.++++.|. ++..+...|.+..+ .+++..|+..++++++++
T Consensus 454 ~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 454 AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC
Confidence 88888888888888888888888888888888888888887 45555544443332 477888888888888888
Q ss_pred CCCchhHHHHHHHHHHhCCcccccccC
Q 024618 239 PKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
|....++..||.+..+.|+.++|+++|
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888888888888888888765
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.8e-27 Score=200.25 Aligned_cols=243 Identities=14% Similarity=0.091 Sum_probs=216.3
Q ss_pred cCChHH---HHHHHHHHHHhCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618 20 KGLLSE---AVLALEAEVLKNPE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA 94 (265)
Q Consensus 20 ~~~~~~---A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 94 (265)
.|++.+ +...+.+++...|. ++.+++.+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence 444544 44455556666677 89999999999987 899999999999999999764 466678888899999999
Q ss_pred HHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618 95 LKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ 172 (265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 172 (265)
+..++++....|...... +.++...|++++|+.+++++++.+|........++......|++++|+..++++++.+|+
T Consensus 529 i~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 529 LAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999887766644333 778899999999999999999999999888887777777889999999999999999996
Q ss_pred CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
+.++..+|.++.+.|++++|+..+++++..+|+++.++.++|.++...|++++|+..++++++.+|+++.++.++|.++
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccccccC
Q 024618 253 RYAGRYPNRGDIF 265 (265)
Q Consensus 253 ~~~~~~~~A~~~~ 265 (265)
..+|++++|+..|
T Consensus 688 ~~lGd~~eA~~~l 700 (987)
T PRK09782 688 QRLDDMAATQHYA 700 (987)
T ss_pred HHCCCHHHHHHHH
Confidence 9999999998653
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-26 Score=177.15 Aligned_cols=251 Identities=23% Similarity=0.247 Sum_probs=217.2
Q ss_pred CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618 3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82 (265)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 82 (265)
|+...--.+.+| +++..|+..+-..+-.++++..|+.+..|+.+|..|...|++.+|..+|.++..++|....+|...|
T Consensus 275 pfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fg 353 (611)
T KOG1173|consen 275 PFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFG 353 (611)
T ss_pred CCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHh
Confidence 444444445666 7788888888777778888888988999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
..+...|+.++|+..|..+.++.|...... |.-+...+.+.-|.+.|..++.+.|.++-+...+|.+.+..+.|.+|
T Consensus 354 hsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 354 HSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred HHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence 999999999999999999999888765444 88888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----CCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618 160 IESFQTALKL----KPQ---DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV 232 (265)
Q Consensus 160 ~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (265)
..+|+.++.. .+. -...+.++|.++.+.+.+++|+..+++++.+.|.++.++..+|.+|..+|+++.|+++|.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999999843 222 235688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHH
Q 024618 233 RALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 233 ~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
+++.++|++..+-..|+.+...
T Consensus 514 KaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 514 KALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhcCCccHHHHHHHHHHHHh
Confidence 9999999987666666655443
No 24
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-26 Score=177.62 Aligned_cols=255 Identities=18% Similarity=0.227 Sum_probs=238.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
...+..++..++|.+..++.+..++.+|-++..+-..--++...|+..+-...-.+.++..|+.+..|+..|..|...|+
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Confidence 35788999999999999999999999999888766544499999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
+.+|.++|.++..++|.....| |..+...+..++|+..|..+-++.|........+|.-|...++++-|..+|.+++
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999988 9999999999999999999999999988888999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-------NYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.+.|.+|-+...+|.+.+..+.+.+|..+|+.++..-+ .....+.++|.++.+++++++|+.++++++.+.|.
T Consensus 408 ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 408 AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999984322 23456899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhCCcccccccC
Q 024618 241 ADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
++.++..+|.+|..+|+++.|++.|
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999865
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.95 E-value=2.5e-26 Score=187.07 Aligned_cols=248 Identities=15% Similarity=0.011 Sum_probs=198.7
Q ss_pred hhhhHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc---------CcHHHHHHHHHHHHhcCCChHHHH
Q 024618 11 LKEGQELFRK---GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN---------DDDQQAIAAMMRAHEAEPTNLEVL 78 (265)
Q Consensus 11 ~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~ 78 (265)
+.+|...+.. +.+++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.++
T Consensus 262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~ 341 (553)
T PRK12370 262 YLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQAL 341 (553)
T ss_pred HHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4455544433 4467999999999999999999999888877633 348899999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (265)
..+|.++...|++++|+..++++++.+|++...+ +.++...|++++|+..++++++++|.++.....++.+++..|+
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG 421 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC
Confidence 9999999999999999999999999999987766 8888899999999999999999999988777777777788899
Q ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 156 YDKAIESFQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|....+...++..+...|+ +|...+++.
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~l 499 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREF 499 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 999999999988774 77888889999999999999999999999888888888888888888888884 777777776
Q ss_pred HhcCCCCchhHHHHHHHHHHhCCccc
Q 024618 235 LAMNPKADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (265)
++.....+.-...+..++.-.|+-+.
T Consensus 500 l~~~~~~~~~~~~~~~~~~~~g~~~~ 525 (553)
T PRK12370 500 LESEQRIDNNPGLLPLVLVAHGEAIA 525 (553)
T ss_pred HHHhhHhhcCchHHHHHHHHHhhhHH
Confidence 65432222222225555555554443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.2e-25 Score=189.50 Aligned_cols=253 Identities=13% Similarity=-0.011 Sum_probs=144.1
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
++.+|.++...|++++|+..+++++...|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345566666666666666666666666666666 6666666666666666666666666666666655555554443322
Q ss_pred hHH----------------------------------------------HHHHHHHHHHhcCCCCCCCc----------h
Q 024618 90 EQA----------------------------------------------AALKYLYGWLRHHPKYGTIA----------P 113 (265)
Q Consensus 90 ~~~----------------------------------------------~A~~~~~~~~~~~~~~~~~~----------~ 113 (265)
..+ +|+..++.+++..|.++... .
T Consensus 165 ~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 165 LSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 222 22223333332222221111 0
Q ss_pred hhhhhhhchHHHHHHHHHHHhcC-----------------------------------CCC----HHHHHHHHHHHHHcc
Q 024618 114 PELSDSLYYADVARLFVEAARMS-----------------------------------PED----ADVHIVLGVLYNLSR 154 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~-----------------------------------~~~----~~~~~~l~~~~~~~~ 154 (265)
..+...+++++|+..|+++++.. |.+ ......++.++...|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 11233344555555555555543 332 122333344444445
Q ss_pred CHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 155 QYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
++++|+..++++....|.. ..++..++.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555555544444311 2244556666666677777777777777777777777777777777
Q ss_pred hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
..|++++|+..++++++.+|++..++..++.++..+|++++|..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777777777777777777777777777777777776654
No 27
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=163.56 Aligned_cols=239 Identities=18% Similarity=0.185 Sum_probs=224.6
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
++|.+|++.|.+.+|.+.++..++..| .++.+..++.+|....+...|+..+...++..|.+...+...++++..+++.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 679999999999999999999999877 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
++|+++|+.+++.+|.+.... +.-+.-.++.+-|+.+|.+.++..-.+++.+.++|.+.+..++++-++..|++++.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 999999999999999998877 77788899999999999999999999999999999999999999999999999998
Q ss_pred hCC---CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618 169 LKP---QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 169 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
... .-.++|+++|.+....|++.-|.++|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+..
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 643 23689999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred HHHHHH
Q 024618 246 QYLRIS 251 (265)
Q Consensus 246 ~~l~~~ 251 (265)
++++.+
T Consensus 467 ~Nl~~~ 472 (478)
T KOG1129|consen 467 TNLQFM 472 (478)
T ss_pred cceeEE
Confidence 776644
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=9.7e-26 Score=163.18 Aligned_cols=256 Identities=18% Similarity=0.185 Sum_probs=218.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
..+.+|..++..|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+.-+.+++++.|+...+....|.+++++
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA------------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
|++++|..-|..+++.+|+..... .......|+...++......+++.|-+...+...+.+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 999999999999999999765333 33445567888888888888888888888888888888
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH-------------------
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW------------------- 211 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------------- 211 (265)
...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++-..+
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888877777642211
Q ss_pred -------------------------------HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618 212 -------------------------------ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 212 -------------------------------~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (265)
..+..|+..-|++.+|+..+.++++++|++..++...+.+|.....|+.
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 3355566667788888888888888888888888888888888888888
Q ss_pred cccc
Q 024618 261 RGDI 264 (265)
Q Consensus 261 A~~~ 264 (265)
|+.-
T Consensus 360 AI~d 363 (504)
T KOG0624|consen 360 AIHD 363 (504)
T ss_pred HHHH
Confidence 7754
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=7.5e-25 Score=175.60 Aligned_cols=255 Identities=17% Similarity=0.214 Sum_probs=216.9
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
.+..|+.++..|++++|..++.++++.+|.++.+|+.+|.+|.+.|+.+++...+-.|-.++|.+.+.|..++.....+|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----DVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~ 161 (265)
++.+|.-+|.++++.+|.+.... +.++.+.|+...|...+.+++...|... ..-...+..+...++-+.|++
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999987666 8899999999999999999999998221 111222333444444444444
Q ss_pred HHHHHHhhC-----------------------------------------------------------------------
Q 024618 162 SFQTALKLK----------------------------------------------------------------------- 170 (265)
Q Consensus 162 ~~~~~~~~~----------------------------------------------------------------------- 170 (265)
.++.++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 444433310
Q ss_pred -----------------------------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc-chhhHHHHHHHHHh
Q 024618 171 -----------------------------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN-YVRAWANMGISYAN 220 (265)
Q Consensus 171 -----------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 220 (265)
.+.+..+..++.++...|++.+|+.++..+....+. +..+|+.+|.||..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 012355778888899999999999999998877654 35799999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+|.+++|+++|.+++...|++.++...|+.++.++|+.++|.+.
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.1e-24 Score=183.72 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=173.2
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
+...|..+...|++++|+..+++++..+|.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhch--------------------------------------------
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYY-------------------------------------------- 122 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------------------------------------------- 122 (265)
++++|+..++++++..|++.... +.++...+..
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHH
Confidence 99999999999999999987654 3333322222
Q ss_pred --HHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhhcCcHH
Q 024618 123 --ADVARLFVEAARMSPEDAD-------VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-SLWNKLGATQANSVQSAD 192 (265)
Q Consensus 123 --~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 192 (265)
++|+..++.+++..|.++. +.......+...|++++|+..|+++++..|..| .+...+|.++...|++++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 4566666666654332221 111111123444566666666666555533221 122223445555555555
Q ss_pred HHHHHHHHHhcCCcc-----------------------------------------------------hhhHHHHHHHHH
Q 024618 193 AILAYQRALDLKPNY-----------------------------------------------------VRAWANMGISYA 219 (265)
Q Consensus 193 A~~~~~~~~~~~~~~-----------------------------------------------------~~~~~~l~~~~~ 219 (265)
|+..|++++..+|.+ ..++..+|.++.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 555555544443322 123345556666
Q ss_pred hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
..|++++|++.+++++...|+++.++..+|.++...|++++|++
T Consensus 371 ~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 66666666666666666666666666666666666666666654
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.94 E-value=1e-24 Score=164.24 Aligned_cols=234 Identities=14% Similarity=0.044 Sum_probs=187.3
Q ss_pred HcCChHHHHHHHHHHHHhCC----CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618 19 RKGLLSEAVLALEAEVLKNP----ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA 94 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 94 (265)
..+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34677889999999997544 23667999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024618 95 LKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP 171 (265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (265)
+..|+++++++|++...+ |.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.+.....+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999999999999988776 888999999999999999999999998742221 2234567889999999988775533
Q ss_pred CCHHHHHHHHHHHHhhcCcHHHHHHHHHH-------HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC-CCch
Q 024618 172 QDYSLWNKLGATQANSVQSADAILAYQRA-------LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP-KADN 243 (265)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~ 243 (265)
.. .|. .+.+....|+..++ ..++.+ .+..|..+++|+.+|.++...|++++|+.+|+++++.+| ++.+
T Consensus 197 ~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 197 KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 22 222 35666667776543 233333 345666778999999999999999999999999999997 6666
Q ss_pred hHHHHHHHHHHhCC
Q 024618 244 AWQYLRISLRYAGR 257 (265)
Q Consensus 244 ~~~~l~~~~~~~~~ 257 (265)
..+.+..+....++
T Consensus 273 ~~~~~~e~~~~~~~ 286 (296)
T PRK11189 273 HRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHhh
Confidence 66555555544433
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.94 E-value=2.7e-24 Score=157.76 Aligned_cols=201 Identities=17% Similarity=0.098 Sum_probs=161.2
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 45667777777888888888887777777777777777888888888888888888888777777777777777777777
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
++++|+..+++++...+ .|.....+..+|.++...|++++|...+.+++..
T Consensus 114 ~~~~A~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPL-----------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred cHHHHHHHHHHHHhccc-----------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777766654311 2344667788899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
+|+++..+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9988888999999999999999999999999888888888888888999999999999888877766543
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.94 E-value=2e-24 Score=176.05 Aligned_cols=221 Identities=14% Similarity=-0.001 Sum_probs=194.5
Q ss_pred CCCChHH--HHHHHHHHhh---cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh---------hhHHHHHHHHHHHH
Q 024618 37 NPENSEG--WRLLGIAHAE---NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE---------LEQAAALKYLYGWL 102 (265)
Q Consensus 37 ~~~~~~~--~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~ 102 (265)
.|.+.++ ++..|..+.. .+++++|+..|+++++.+|+++.++..+|.++... +++++|+..+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3444443 3445554433 34678999999999999999999999999887644 34899999999999
Q ss_pred hcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024618 103 RHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK 179 (265)
Q Consensus 103 ~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 179 (265)
+.+|+++..+ +.++...|++++|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999998877 7888999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 180 LGATQANSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 180 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
++.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+.+.....|+...+...++..+...|+
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 7777888999999999999999875 77888899999999999999999999999999889888888889888888774
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.94 E-value=5.5e-24 Score=167.64 Aligned_cols=255 Identities=12% Similarity=-0.014 Sum_probs=208.1
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
++..|......|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++.++..|+++.++..++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45668888888999999999999888888775 45666788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSLYYADVARLFVEAARMSP----EDADVHIVLGVLYNLSRQYD 157 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 157 (265)
|++++|.+.+.+..+....++... .......+..+++...+.++....| +++.++..++..+...|+++
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 999999999888887754433322 1111233344445567777777777 58899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHH--HHHHHHHHhhcCcHHHHHHHHHHHhcCCcch--hhHHHHHHHHHhcCCcHHHHHHHH-
Q 024618 158 KAIESFQTALKLKPQDYSLW--NKLGATQANSVQSADAILAYQRALDLKPNYV--RAWANMGISYANQGMYEESVRYYV- 232 (265)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~- 232 (265)
+|...++++++..|++.... ..........++.+.+++.++++++..|+++ .....+|+++.+.|++++|.++|+
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999999987532 3333344456888999999999999999999 888899999999999999999999
Q ss_pred -HHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 233 -RALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 233 -~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
.+++..|++.. +..+|.++.++|+.++|.++|
T Consensus 361 a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 361 VAACKEQLDAND-LAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred hHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Confidence 68888898655 559999999999999987654
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-24 Score=174.94 Aligned_cols=252 Identities=17% Similarity=0.181 Sum_probs=190.4
Q ss_pred CCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618 5 VGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV 83 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 83 (265)
.+.+.++.+|.+.+..|+|..|+.+|++++..+|.. ++....+|.|++.+|+.+.|+..|.++++++|.+..++..||.
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE 241 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 344556777888888888888888888888888764 4567778888888888888888888888888888888777776
Q ss_pred hhhhh---hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc
Q 024618 84 SHTNE---LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPED---ADVHIVLGVLYNLSR 154 (265)
Q Consensus 84 ~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 154 (265)
+-... ..+..++..+.++...+|.+|..+ +..+...|++..+..+...++...... ...++.+|.++..+|
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 65543 456677888888888888887766 677777778888777777777654332 355777888888888
Q ss_pred CHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC----CcHHHHH
Q 024618 155 QYDKAIESFQTALKLKPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG----MYEESVR 229 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~ 229 (265)
++++|..+|.++++.+|++ .-.++.+|..+...|+++.|+.+|++++...|++.++...+|.+|...+ ..+.|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 8888888888888877777 5667777888888888888888888888888888777777777777765 4567777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 230 YYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
+..++++..|.+.++|..++.++....
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 777777777777777777777665543
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.94 E-value=1.6e-24 Score=163.20 Aligned_cols=210 Identities=13% Similarity=0.029 Sum_probs=172.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
|++++|+..++++++.+|+++... ..+....+++++|+..+.+.....+... |. .+......|+...+ ..+..+
T Consensus 146 g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~ 221 (296)
T PRK11189 146 GRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERL 221 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHH
Confidence 999999999999999999987322 3344567789999999987765433222 22 35555666766544 233333
Q ss_pred H-------hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-cchhhHHHHHHHHHhcC
Q 024618 167 L-------KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-NYVRAWANMGISYANQG 222 (265)
Q Consensus 167 ~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 222 (265)
. +..|..+.+|+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+....+
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 3 55667788999999999999999999999999999997 55555555555444433
No 37
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=7.6e-25 Score=157.62 Aligned_cols=248 Identities=16% Similarity=0.182 Sum_probs=221.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhC---CCC----h-HHH--HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 16 ELFRKGLLSEAVLALEAEVLKN---PEN----S-EGW--RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~---~~~----~-~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
.++..++...|-......++.. |.. . +-| ..+|.||+.+|-+.+|.+.++.+++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 3445667777766655554432 211 1 122 3489999999999999999999999877 788999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
.+..+...|+..+...++..|.+...+ +.++...++.++|.++|+.+++.+|.+.++.-.+|.-|+-.++++-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 999999999999999999999988877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc---chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN---YVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
|++++++.-.+++.+.++|.|++..++++-++..|++++....+ -.++|+++|.+....|++.-|..+|+-++..+|
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999987442 368999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCccccccc
Q 024618 240 KADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
++.+++.+|+.+-.+.|+.++|..+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHH
Confidence 9999999999999999999998754
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.93 E-value=7.8e-26 Score=169.98 Aligned_cols=231 Identities=20% Similarity=0.162 Sum_probs=119.5
Q ss_pred CCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh
Q 024618 5 VGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS 84 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 84 (265)
.+..-|...|......+++++|+..|++++..++.++..+..++.+ ...+++++|+.++.++.+..+ ++..+.....+
T Consensus 42 ~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~ 119 (280)
T PF13429_consen 42 DDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHH
Confidence 3344456688999999999999999999999999988888888888 799999999999999988764 56777788888
Q ss_pred hhhhhhHHHHHHHHHHHHhcC--CCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 85 HTNELEQAAALKYLYGWLRHH--PKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
+...++++++...++++.... +.++..+ +.++...|+.++|+..++++++.+|+++.+...++.++...|+++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999987644 3344444 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
...+....+..|.++..+..+|.++...|++++|+.++++++..+|+++..+..+|.++...|+.++|..+++++++.
T Consensus 200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999988889999999999999999999999999999999999999999999999999999999999999988753
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.93 E-value=5.3e-23 Score=141.20 Aligned_cols=206 Identities=18% Similarity=0.112 Sum_probs=177.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|..++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 46778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
++++|...|++++.. |. .|..+..+.++|.|..+.|+++.|..+|+++++.
T Consensus 118 ~~~eA~q~F~~Al~~-P~----------------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 118 RPEEAMQQFERALAD-PA----------------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ChHHHHHHHHHHHhC-CC----------------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 888888777777652 21 3445688999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
+|+.+.....++..+++.|++..|..++++.....+-..+.+.....+-...|+-+.+-.+=.+.....|...+.
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999999999999999888877777777777788889999999888888888888887654
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.5e-23 Score=169.39 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=222.8
Q ss_pred CcchhhhHHHHHcCCh--HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhh
Q 024618 8 PNPLKEGQELFRKGLL--SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVS 84 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 84 (265)
+.++-.+..+...|.. +.|...|..+++..|++..+++..|.+.+..|+|..|+.+|++++.++|.. ++....+|.|
T Consensus 129 ~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~C 208 (1018)
T KOG2002|consen 129 SHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHC 208 (1018)
T ss_pred chhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhH
Confidence 3445556666666665 999999999999999999999999999999999999999999999999975 6788889999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCCc-h-----hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 024618 85 HTNELEQAAALKYLYGWLRHHPKYGTIA-P-----PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (265)
+..+|+.+.|+..|+++++++|.+.... + ..+.....+..+...+.++...+|.+|.++..++..++..|+|..
T Consensus 209 f~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 209 FWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred HHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHH
Confidence 9999999999999999999999776665 2 222334557889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 159 AIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 159 A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+..+...++...... .+.++.+|.++..+|++++|..+|.++++.+|++ .-.++.+|+.+.+.|+++.|+.+|++.
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 999999999875433 4669999999999999999999999999999998 678889999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHhC
Q 024618 235 LAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
++..|++.++...||.+|...+
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhh
Confidence 9999999999999999998875
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.92 E-value=1.1e-22 Score=159.59 Aligned_cols=249 Identities=13% Similarity=0.089 Sum_probs=187.6
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHH-HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGW-RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
.+......|+++.|..++.++.+.+|++..+. ...+.++...|++++|...+++..+.+|+++.++..++.+|...|++
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 35555777888888888888777777664333 34477777788888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCch----hhh---hh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 024618 92 AAALKYLYGWLRHHPKYGTIAP----PEL---SD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI 160 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~~----~~~---~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 160 (265)
++|+..+.+..+..+.++.... ..+ .. ..+.+.....++...+..|+++.+...++..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888777777766554332221 111 11 111122223333333345668889999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
..++++++. |.++......+.+ ..++.+++++..++.++..|+++..+..+|.++...|++++|.++|+++++..|+
T Consensus 284 ~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 284 QIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999995 5566555555544 4499999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhCCcccccccC
Q 024618 241 ADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+ ..+..++.++.++|+.++|.++|
T Consensus 361 ~-~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 361 A-YDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred H-HHHHHHHHHHHHcCCHHHHHHHH
Confidence 5 44668999999999999997764
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.92 E-value=7.3e-23 Score=150.17 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=174.4
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS 119 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (265)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---------------- 93 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT---------------- 93 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------
Confidence 3678889999999999999999999999999999999999999999988888777766665554
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--PQDYSLWNKLGATQANSVQSADAILAY 197 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 197 (265)
..|.+..++..+|.++...|++++|+..+++++... +.....+..+|.++...|++++|...+
T Consensus 94 ---------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 94 ---------------LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ---------------hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456667889999999999999999999999999853 456778999999999999999999999
Q ss_pred HHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
++++..+|.++.++..+|.++...|++++|+..++++++..|.++..+..++.++...|+.++|..+
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 159 TRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999888888888999999999999888653
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-23 Score=158.22 Aligned_cols=254 Identities=17% Similarity=0.224 Sum_probs=191.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
-.+|...+..|+|+.|+..|.+++.++|.+...+.+...+|...|+|++|++--.+.+++.|+.+..|..+|..+...|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 45688888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc----------------------------------------------------------
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---------------------------------------------------------- 112 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 112 (265)
+++|+..|.+.++.+|++....
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 8888888888888777653111
Q ss_pred -----------------------------------------------------------------hhhhhhhhchHHHHH
Q 024618 113 -----------------------------------------------------------------PPELSDSLYYADVAR 127 (265)
Q Consensus 113 -----------------------------------------------------------------~~~~~~~~~~~~a~~ 127 (265)
|.......++..|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 223333344667777
Q ss_pred HHHHHHhcCCCCHHHH-----------------------------------------HHHHHHHHHccCHHHHHHHHHHH
Q 024618 128 LFVEAARMSPEDADVH-----------------------------------------IVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 128 ~~~~~~~~~~~~~~~~-----------------------------------------~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
.+..++.++ .+...+ ..+|..+...++++.|+.+|.++
T Consensus 246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 777777776 433222 22344555556666677777666
Q ss_pred HhhC--------------------------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618 167 LKLK--------------------------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220 (265)
Q Consensus 167 ~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (265)
+... |.-..--...|..+++.|+|..|+..|.+++..+|+++..|.+.|.||.+
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 5432 11122234457778888888888888888888888888888888888888
Q ss_pred cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+|.+..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877654
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=6.3e-22 Score=156.00 Aligned_cols=255 Identities=13% Similarity=0.006 Sum_probs=217.4
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH-HHHhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL-EVLLSLGVSHTNEL 89 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~ 89 (265)
+..|...+..|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 56788889999999999999999999898888888899999999999999999999999999875 56666799999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHccCHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI----VLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~ 162 (265)
+++.|...++.+.+..|+++... +.++...|++++|.+.+.+..+..+.++.... ....-....+..+++...
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999766 99999999999999999999987554443321 222223455556666778
Q ss_pred HHHHHhhCC----CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH--HHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 163 FQTALKLKP----QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW--ANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 163 ~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
+.++....| +++..+..++..+...|++++|...++++++..|++.... ..........++.+.+++.++++++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 888888777 5899999999999999999999999999999999987532 2233334456888999999999999
Q ss_pred cCCCCc--hhHHHHHHHHHHhCCcccccccC
Q 024618 237 MNPKAD--NAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 237 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
..|+++ .....+|.++.+.|++++|.+.|
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999 88899999999999999998754
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.91 E-value=2.9e-22 Score=137.62 Aligned_cols=189 Identities=18% Similarity=0.136 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY 121 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
.+...+|.-|+..|++..|..-++++++.+|++..+|..++.+|...|+.+.|-+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yr---------------------- 93 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYR---------------------- 93 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHH----------------------
Confidence 4778899999999999999999999999999999999999999999998877775555
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--KPQDYSLWNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
++++++|++.+++.+.|..++.+|++++|...|++++.. .+..+.++.++|.|..+.|+++.|..+|++
T Consensus 94 ---------kAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 94 ---------KALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred ---------HHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 455556778999999999999999999999999999974 455678999999999999999999999999
Q ss_pred HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 261 (265)
+++.+|+.+.....++..++..|++..|..++++.....+-..+.+.....+-...|+-+.|
T Consensus 165 aL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 165 ALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred HHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999888776677766666777777776544
No 46
>PLN02789 farnesyltranstransferase
Probab=99.91 E-value=6.4e-22 Score=148.79 Aligned_cols=204 Identities=13% Similarity=0.044 Sum_probs=138.8
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH--HH
Q 024618 17 LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ--AA 93 (265)
Q Consensus 17 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~ 93 (265)
+...+++++|+..+.+++..+|.+..+|..++.++..+| ++++++..+.++++.+|++..+|...+.+....|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 345678888999999999999988888988888888888 578889999999988998888888888887777653 55
Q ss_pred HHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCH----HHHHHHH
Q 024618 94 ALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS---RQY----DKAIESF 163 (265)
Q Consensus 94 A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~~ 163 (265)
++.+++++++.+|++..++ +.++...|+++++++.+.++++.+|.+..+|..++.+.... |.+ ++++.+.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 6666666666666665555 55555556666666666666666666666666666555443 222 3455555
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618 164 QTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (265)
.+++..+|++..+|..++.++.. .++..+|++.+.+++...|.++.++..++.+|..
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 56666666666666666666655 2334556666666666566666666666666554
No 47
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=161.72 Aligned_cols=221 Identities=21% Similarity=0.218 Sum_probs=191.7
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhc
Q 024618 45 RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLY 121 (265)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 121 (265)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++ +..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999998877 888888999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhcCcHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIV-------LGVLYNLSRQYDKAIESFQTALKLKP--QDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 192 (265)
-.+|++++.+-+...|........ .............-.+.|..+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999998877653211110 00001111223345566667777777 789999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
|+.+|+.++...|++...|..||-.+..-.+.++|+..|++|+++.|....++++||.++..+|.|++|.++|
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764
No 48
>PLN02789 farnesyltranstransferase
Probab=99.91 E-value=5.7e-22 Score=149.07 Aligned_cols=207 Identities=11% Similarity=0.006 Sum_probs=186.0
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhch--
Q 024618 49 IAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYY-- 122 (265)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 122 (265)
.++...+..++|+..+.++++++|.+..+|...+.++...| ++++++..++++++.+|++..++ +.++...+..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 33455678899999999999999999999999999999998 68999999999999999998888 5566666653
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCc----HHHHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS---VQS----ADAIL 195 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~ 195 (265)
++++.++.++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|..++.+.... |.+ ++++.
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999988776 333 47888
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618 196 AYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA 255 (265)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 255 (265)
+..+++..+|++..+|..++.++.. .++..+|++.+.+++...|.++.++..|+.++...
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 9999999999999999999999988 45678899999999999999999999999999863
No 49
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.3e-24 Score=156.67 Aligned_cols=255 Identities=15% Similarity=0.141 Sum_probs=216.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
...+|..+++..+|.+|+..+..+++..|++...|...+.+++..+++++|....++.+++.|..+..+...+.++...+
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHH------------hcCCCC---CCCc------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618 90 EQAAALKYLYGWL------------RHHPKY---GTIA------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV 148 (265)
Q Consensus 90 ~~~~A~~~~~~~~------------~~~~~~---~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 148 (265)
+..+|...++..- .+-|.+ +... +.++...+++++|...--..+++++.+..+++..|.
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccc
Confidence 8888776655221 111111 1111 778888899999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHH
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDY------------SLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWA 212 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ 212 (265)
++...++.+.|+..|++++.++|+.. ..+..-|.-.++.|++.+|.+.|..+|.++|++ +..|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 99999999999999999999888763 446677888888899999999999999999876 35677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+++.+..++|+.++|+...+.+++++|....++...|.|+..++++++|++.
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999889999999999999988888754
No 50
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-21 Score=147.59 Aligned_cols=239 Identities=19% Similarity=0.237 Sum_probs=215.7
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-------HHHHhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-------LEVLLSLGV 83 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~ 83 (265)
-.+|...+...++..|++.+..++.++ .+...+...+-+|+..|.+.+++.....+++..... ..+...+|.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 357899999999999999999999999 888899999999999999999999999988865543 234455777
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 84 SHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
.+...++++.++.+|.+++....+ ..+.......++++...+...-.+|.-..-....|..++..|+|..|+..|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 888899999999999998875544 556777788888888888888888988888888899999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
.++++.+|+++..+.+.|.||.+.|.+..|+...+.+++++|+...+|...|.++..+.+|++|++.|+++++.+|++.+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 024618 244 AWQYLRISLRYA 255 (265)
Q Consensus 244 ~~~~l~~~~~~~ 255 (265)
+...+..|...+
T Consensus 462 ~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 462 AIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.6e-21 Score=141.56 Aligned_cols=243 Identities=17% Similarity=0.207 Sum_probs=176.7
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHH-------
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVL------- 78 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~------- 78 (265)
..|.+|..|...|+-.-|+.-+.++++..|+...+....|.+++++|++++|..-|..+++.+|++. ++.
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 3466777777777777777777777777777777777777777777777777777777777776432 111
Q ss_pred -----hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 79 -----LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 79 -----~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
......+...|+...++.+...++++.|-+.... +.++...|....|+.-++.+-++..++.+.++.++.++
T Consensus 154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~ 233 (504)
T KOG0624|consen 154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL 233 (504)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1222334455666677777777777766665555 66667777777777777777777777777777777777
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCH--------------------------------------------------HHHHHH
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDY--------------------------------------------------SLWNKL 180 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------------------~~~~~l 180 (265)
+..|+.+.++...+++++++|++- ..+..+
T Consensus 234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 777777777777777776666542 122334
Q ss_pred HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251 (265)
Q Consensus 181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 251 (265)
..|+...+++.+|++.+.+++..+|++..++...+.+|.-...|+.|+..|+++.+.++++..+...+-.+
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA 384 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 55567778999999999999999999999999999999999999999999999999999998776665443
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=3e-21 Score=152.91 Aligned_cols=243 Identities=18% Similarity=0.165 Sum_probs=207.9
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618 23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA-EPTNLEVLLSLGVSHTNELEQAAALKYLYGW 101 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (265)
..++++.++++++.+|.|+.+.+.++.-|...++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999 5567899999999999999999999999999
Q ss_pred HhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc-------------------------------------------
Q 024618 102 LRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM------------------------------------------- 135 (265)
Q Consensus 102 ~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~------------------------------------------- 135 (265)
+.-.|++.... ..+-...++.++++..+...+..
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 99888855433 22222333333333332221110
Q ss_pred ---------------------CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618 136 ---------------------SPED-----ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 136 ---------------------~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (265)
.|+. ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|+
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 0010 13567788889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH--HHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR--YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
..+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.+.|.++|
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999999999999999999999999999999888888 999999999999999999999999999999998775
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-21 Score=144.00 Aligned_cols=243 Identities=17% Similarity=0.163 Sum_probs=158.0
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
..|.+++..|++++|+..|+++...+|....+.-..|..+...|+++.-.......+..+.....-|+--+...+..+++
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 56888888888888888888888888877776666666666666655555555555555544445555555555666666
Q ss_pred HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH--------
Q 024618 92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI-------- 160 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-------- 160 (265)
..|+.+-++++..+|.+...+ |..+...++.++|+-.|+.+..+.|.+.+.+..+..+|...|++.+|.
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 666666666666666665554 666666666666666666666666666666666666666655555444
Q ss_pred ----------------------------HHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618 161 ----------------------------ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 161 ----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
+.+++++++.|....+...++.++...|.++.++..+++.+...|+ ...+.
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~ 475 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHN 475 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHH
Confidence 4445555555555566666666666667777777777776666555 35666
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA 255 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 255 (265)
.+|+++...+.+++|+++|..++.++|++..+...+-..-...
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 6777777777777777777777777777766666665544433
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=9.5e-22 Score=147.98 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
.+|..+-+.++..+..++.++.+.|.+.+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.
T Consensus 473 ~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 473 ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 33333333444444445555666677777788888888888888888888888888888888888888888888887766
Q ss_pred cCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024618 104 HHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180 (265)
Q Consensus 104 ~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 180 (265)
+--++...+ +.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-.+
T Consensus 553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl 632 (840)
T KOG2003|consen 553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL 632 (840)
T ss_pred HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH
Confidence 655555544 77888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
|..|....-+++|+.+|+++--+.|+...-...++.|+.+.|+|++|.+.|+..-...|.+.+.+..|.++.-.+|-
T Consensus 633 ~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 88888888888899999888888888777677788888888999999999988888888888888877777666654
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-20 Score=135.52 Aligned_cols=231 Identities=17% Similarity=0.121 Sum_probs=203.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HHHHhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LEVLLSLGVS 84 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~ 84 (265)
-+-.|.-+.-..+.++|+..|-.+++.+|...++...+|+.+...|..+.|+..-+..++ .|+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 355677888889999999999999999999999999999999999999999999777665 4443 3578899999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCH
Q 024618 85 HTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA-----DVHIVLGVLYNLSRQY 156 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~ 156 (265)
|+..|-++.|...|........--.... ..+|....+|++|++..++..+..+... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999998876433333333 7889999999999999999999887653 4677888888899999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
+.|+..+.++++.+|++..+-..+|.+....|+++.|++.++.+++.+|.. +.+.-.+..||.++|+.++.+.++.++.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 5778889999999999999999999999
Q ss_pred hcCCCC
Q 024618 236 AMNPKA 241 (265)
Q Consensus 236 ~~~~~~ 241 (265)
+..++.
T Consensus 277 ~~~~g~ 282 (389)
T COG2956 277 ETNTGA 282 (389)
T ss_pred HccCCc
Confidence 988763
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.4e-20 Score=147.05 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=182.7
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
+..+......|+...|..++.++++.+|++.+.|+..-.+.....+++.|..+|.++....| ...+|+.-+.+...+++
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhh
Confidence 34455555666666666666666666666666666666666666666666666666666544 34566666666666777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
.++|+..++.+++..|+...++ |+++.+.++.+.|...|...++..|..+..|..++.+-...|....|...++++.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 7777777777777777776666 7777777777777777777777777777777777777777777777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------------------------------chhhHHHHHHH
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------------------------------YVRAWANMGIS 217 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~ 217 (265)
-.+|++...|......-.+.|+.+.|.....++++..|+ ++.++...|..
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 777777777777777777778888777777777766554 34455778888
Q ss_pred HHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcc
Q 024618 218 YANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259 (265)
Q Consensus 218 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (265)
+....++++|.++|.++++.+|++.++|.+.-..+...|.-+
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 888899999999999999999999999988888888888544
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=1.7e-20 Score=150.93 Aligned_cols=255 Identities=16% Similarity=0.146 Sum_probs=209.0
Q ss_pred CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
....++.+|.++-.+|+.+++...+-.+-..+|.+.+.|..++....++|++++|.-+|.++++.+|.+....+..+.+|
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~ 251 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLY 251 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCc--------------------------------------------hhhhhhhhc
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIA--------------------------------------------PPELSDSLY 121 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~ 121 (265)
.++|+...|...|.+++...|....-+ +.+++....
T Consensus 252 ~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q 331 (895)
T KOG2076|consen 252 QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ 331 (895)
T ss_pred HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence 999999999999999999998322100 333334444
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------cC---C
Q 024618 122 YADVARLFVEAAR-------------------------------------------------------------MS---P 137 (265)
Q Consensus 122 ~~~a~~~~~~~~~-------------------------------------------------------------~~---~ 137 (265)
++.+......... .+ .
T Consensus 332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 4444433332222 00 0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
+++..+..++..+...|++.+|+.++..+....+. +..+|..+|.||..+|.+++|+++|++++...|++.++...++.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 12347788899999999999999999999877553 36799999999999999999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHhcCCCC---------chhHHHHHHHHHHhCCccc
Q 024618 217 SYANQGMYEESVRYYVRALAMNPKA---------DNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~ 260 (265)
++.++|+.++|.+.+.....-++.+ .........++...|+.++
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999877433222 2345567777887777654
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.9e-21 Score=145.41 Aligned_cols=255 Identities=16% Similarity=0.167 Sum_probs=227.6
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhh--cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAE--NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
+.++..+++.|+++.|+++++-.-+.+.... .+-.++...++. -.++..|..+...++.++.-++.++.+.|.+.+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 4568889999999999999886655443322 233445555544 3478999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ 164 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (265)
.|++++|.+.|+.++..+......+ |..+..+|+.++|+++|-+...+--++..+++.++.+|..+.+..+|++.+.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999999998877766655 7888899999999999999988888899999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
++..+-|++|.++..+|.+|-+.|+..+|.+++-......|.+.++.-.+|..|....-+++|+.+|+++.-+.|+...-
T Consensus 583 q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhCCcccccccC
Q 024618 245 WQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 245 ~~~l~~~~~~~~~~~~A~~~~ 265 (265)
...++.|+.+.|++.+|.++|
T Consensus 663 qlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHH
Confidence 888999999999999998764
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=3.1e-20 Score=154.99 Aligned_cols=250 Identities=12% Similarity=0.007 Sum_probs=193.2
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA 92 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 92 (265)
.|..+...|++++|+..|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 37788899999999999999999999999999999999999999999999999999999885554 55555555566776
Q ss_pred HHHHHHHHHHhcCCCCCCCc------------------------------------------------------------
Q 024618 93 AALKYLYGWLRHHPKYGTIA------------------------------------------------------------ 112 (265)
Q Consensus 93 ~A~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 112 (265)
+|+..++++++.+|++....
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 69999998888888765111
Q ss_pred -------------------------------------------------------------------hhhhhhhhchHHH
Q 024618 113 -------------------------------------------------------------------PPELSDSLYYADV 125 (265)
Q Consensus 113 -------------------------------------------------------------------~~~~~~~~~~~~a 125 (265)
+..+...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3334444445555
Q ss_pred HHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHH
Q 024618 126 ARLFVEAARMSP------EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP---------------QDYSLWNKLGATQ 184 (265)
Q Consensus 126 ~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~ 184 (265)
+.+|+.++...| .+......|...+...+++++|..++++..+..| +.......++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 555555554331 1222234556666677777777777777766433 1235666778888
Q ss_pred HhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 185 ANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 185 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
...|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.+..++|++..+...++.++..+|++++|..
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999988743
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=7e-20 Score=143.78 Aligned_cols=251 Identities=10% Similarity=0.002 Sum_probs=200.2
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH-HHHHHhhcCcHHHHHHHHHHHHhcCCChHHH-Hhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL-LGIAHAENDDDQQAIAAMMRAHEAEPTNLEV-LLSLGVSHTNE 88 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~~ 88 (265)
+..|...+..|++++|.+.+.+..+..+ ++...+. .+.+....|+++.|..++.++.+.+|++... ....+.++...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 5668888889999999988887655433 3444444 4666699999999999999999999987543 34558999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHHccCHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI--------VLGVLYNLSRQYD 157 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~ 157 (265)
|+++.|+..++++.+..|+++... +.++...|++++|+..+.+..+..+.++.... .+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999998777 89999999999999999999988766544222 2222222233444
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 158 KAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.....++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.+++++..++.++.
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh
Confidence 4455555554556779999999999999999999999999999995 4455544444444 459999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 238 NPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
.|+++..+..+|.++...|++++|.+.|
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999998764
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.88 E-value=1.9e-20 Score=146.96 Aligned_cols=226 Identities=18% Similarity=0.145 Sum_probs=168.7
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCCh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLK--------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTN 74 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 74 (265)
..+|..|..+|+|++|+..++.+++. .|.-......+|.+|...+++.+|+..|++++.+ +|.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 35789999999999999999999987 3332334445899999999999999999999976 3444
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-----------hhhhhhhhchHHHHHHHHHHHhcC-------
Q 024618 75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-----------PPELSDSLYYADVARLFVEAARMS------- 136 (265)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~------- 136 (265)
..++.+||.+|...|++++|..++++++++........ +.++...+++++|..++++++++.
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 67899999999999999999999999887654411111 666777777888888777777652
Q ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----
Q 024618 137 -PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK--------PQDYSLWNKLGATQANSVQSADAILAYQRALDL---- 203 (265)
Q Consensus 137 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 203 (265)
|.-+..+.++|.+|...|++++|.+.+++++++. +.....+..+|..+.+.+++.+|...|.+++.+
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2234567778888888888888888888887653 222455677777777788887777777777654
Q ss_pred ---CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 204 ---KPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 204 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|+....+.+|+.+|..+|++++|+++..+++.
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 233345677788888888888888888777764
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=8.6e-20 Score=142.66 Aligned_cols=237 Identities=17% Similarity=0.134 Sum_probs=123.2
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
|+.-+..+.+.+-++-|+.+|..+++.+|.....|...+..--.-|..++-..++++++...|.....|...+..+...|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 34445555555555555555555555555555555544444444444454455555555555544444544454444455
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc------------------------------------hhhhhhhhchHHHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIA------------------------------------PPELSDSLYYADVARLFVEAA 133 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~a~~~~~~~~ 133 (265)
+...|...+..+++.+|++..++ +.+...++..++|++++++++
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 55555555555555555444444 344444455555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN 213 (265)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 213 (265)
+..|+....|..+|+++.+.++.+.|...|...++..|.++..|..++.+-.+.|+...|...++++.-.+|.++..|..
T Consensus 679 k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 679 KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
....-.+.|+.+.|...+.++++..|++...|.
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 555555555555555555555555555544443
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.87 E-value=6e-20 Score=134.79 Aligned_cols=191 Identities=18% Similarity=0.096 Sum_probs=123.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH---HHhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE---VLLSLG 82 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la 82 (265)
.++..|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..++++++..|+++. +++.+|
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 457788888888888888888888888888765 57788888888888888888888888888887765 677777
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
.++.... +......|++++|++.+++++..+|++...+..+..+....+ .
T Consensus 115 ~~~~~~~-----------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~--- 164 (235)
T TIGR03302 115 LSNYNQI-----------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R--- 164 (235)
T ss_pred HHHHHhc-----------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H---
Confidence 7776540 001122244445555555555555554433322211111000 0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 163 FQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
.......+|.++...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++......|
T Consensus 165 ----------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 ----------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01123456667777777777777777777765543 45677777777777777777777666655544
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.87 E-value=5.4e-20 Score=144.43 Aligned_cols=228 Identities=17% Similarity=0.154 Sum_probs=188.8
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC--
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHP-- 106 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-- 106 (265)
.|.-..+...++..|...|++++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3555567777999999999999999999999998 555556666799999999999999999999998533
Q ss_pred ---CCCCCc------hhhhhhhhchHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 107 ---KYGTIA------PPELSDSLYYADVARLFVEAARMS--------PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 107 ---~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
+++... +..|...|++++|..++++++++. |.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 333222 778899999999999999998763 233456788899999999999999999999876
Q ss_pred C--------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--------CcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 170 K--------PQDYSLWNKLGATQANSVQSADAILAYQRALDLK--------PNYVRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 170 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
. +.-+....++|.+|..+|++++|.+.+++++... +.....+..+|..+.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 2336789999999999999999999999999874 22345778899999999999999999998
Q ss_pred HHhc----CCC---CchhHHHHHHHHHHhCCccccccc
Q 024618 234 ALAM----NPK---ADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 234 a~~~----~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+..+ .|+ -...+.+|+.+|..+|++++|+++
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 8765 333 346788999999999999999864
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.1e-19 Score=130.92 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=193.4
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--------hhhh
Q 024618 45 RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--------PPEL 116 (265)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~ 116 (265)
+..|.-+.-.++.++|+..|..+++.+|...+++..+|..+...|+.+.|+..-+..+. .|+.+..- +.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44566777888999999999999999999999999999999999999999998766554 45544322 8889
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhhcCcH
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD-----YSLWNKLGATQANSVQSA 191 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~ 191 (265)
+..|-++.|...|.........-..+...+..+|-...+|++|++.-++..++.+.. +..++.++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999988666667899999999999999999999999999988765 456888899999999999
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhCCccccc
Q 024618 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA-DNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~ 262 (265)
.|+..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +.+...|..+|.++|+.++..
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999987 577888999999999987754
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.7e-19 Score=149.50 Aligned_cols=249 Identities=14% Similarity=0.012 Sum_probs=158.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618 16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 95 (265)
.+...|+.++|+..+++++...|........+|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+
T Consensus 77 l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 77 IAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 33334444444444444441112222233334668888889999999999999999988888888888888889999999
Q ss_pred HHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH----------------------------
Q 024618 96 KYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIV---------------------------- 145 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------------------- 145 (265)
..++++...+|...... +.++...++..+|+..++++++.+|++..++..
T Consensus 157 ~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~ 236 (822)
T PRK14574 157 KQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE 236 (822)
T ss_pred HHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH
Confidence 99988888888855544 333334556656888888888888877553332
Q ss_pred --------------------------------------------------------------------------------
Q 024618 146 -------------------------------------------------------------------------------- 145 (265)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (265)
T Consensus 237 ~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 237 HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence
Q ss_pred ----------------HHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 146 ----------------LGVLYNLSRQYDKAIESFQTALKLKP------QDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 146 ----------------l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.|..|+..+++++|+.+|.+++...| .+......|-..+...+++++|..++++....
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 33334444444444444444443321 11111234445555666666666666665553
Q ss_pred CC---------------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 204 KP---------------NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 204 ~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.| +...+...++.++...|+..+|.+.+++.+...|.++..+..+|.++...|...+|...
T Consensus 397 ~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33 12244556777777778888888888888888888888888888888887777776643
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.86 E-value=2.8e-20 Score=124.87 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=120.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC
Q 024618 126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP 205 (265)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 205 (265)
..+++++++.+|++ +..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788899988875 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
+++.+++.+|.++..+|++++|+..|+++++..|+++..+..++.+...++
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876653
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.86 E-value=3e-19 Score=131.13 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAP 113 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 113 (265)
++..+..++.+|..++..|++++|+..+++++...|+++ .+++.+|.++...|++++|+..++++++..|+++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---- 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC----
Confidence 345678999999999999999999999999999999875 5789999999999999999988888888877643
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS--------RQYDKAIESFQTALKLKPQDYSLWNKLGATQA 185 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (265)
....+++.+|.++... |++++|+..+++++..+|++...+..+..+..
T Consensus 105 ------------------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 105 ------------------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred ------------------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 2234567777777665 88999999999999999998766543332221
Q ss_pred hhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhCCccccc
Q 024618 186 NSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA---DNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 186 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 262 (265)
..+ . .......+|.++...|++.+|+..++++++..|+. +.++..+|.++..+|++++|.
T Consensus 161 ~~~----~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 161 LRN----R-------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHH----H-------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 111 0 11234578999999999999999999999997765 479999999999999999998
Q ss_pred cc
Q 024618 263 DI 264 (265)
Q Consensus 263 ~~ 264 (265)
++
T Consensus 224 ~~ 225 (235)
T TIGR03302 224 DA 225 (235)
T ss_pred HH
Confidence 65
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.7e-19 Score=132.24 Aligned_cols=251 Identities=15% Similarity=0.082 Sum_probs=204.3
Q ss_pred hHHHHHcCChHH--HHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 14 GQELFRKGLLSE--AVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 14 ~~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
+......++... +..++-.....-|++...+..+|.+++..|++++|+..|+++..++|.+....-..|..+...|++
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 333444444444 444555556677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
+.-.......+.........| +..++..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 998888888887765444333 88899999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhcCcHHHH------------------------------------HHHHHHHhcCCcchhhHH
Q 024618 169 LKPQDYSLWNKLGATQANSVQSADAI------------------------------------LAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~~~A~------------------------------------~~~~~~~~~~~~~~~~~~ 212 (265)
+.|...+.|..+-.+|...|.+.+|. +++++++.+.|....+-.
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 99999988888888888877766654 555555666666666667
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
.++.++...|+++.++..+++.+...|+ ...+..||.++...+.+++|.+.|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7777777777777777777777777665 456667777777777777766543
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.84 E-value=2e-18 Score=137.16 Aligned_cols=237 Identities=18% Similarity=0.160 Sum_probs=199.7
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKN-PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
+...|..+..+...++.+.|....+++++.+ .+++.+|..++.+....+++.+|+.+.+.++.-.|+|.........+-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 3456788999999999999999999999995 567899999999999999999999999999999888655444444444
Q ss_pred hhhhhHHHHHHHHHHHHhcC--------------------------------------------------------CCC-
Q 024618 86 TNELEQAAALKYLYGWLRHH--------------------------------------------------------PKY- 108 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~--------------------------------------------------------~~~- 108 (265)
...++.++|+..+...+..- |..
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 44455555544433222211 100
Q ss_pred -----CCCc----------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618 109 -----GTIA----------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173 (265)
Q Consensus 109 -----~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 173 (265)
...+ +..+...+..+++..++.++-+++|..+..++..|.++...|++.+|.+.|..++.++|++
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 0000 5567777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 174 YSLWNKLGATQANSVQSADAIL--AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
+.....+|.++...|+..-|.. .+..+++.+|.++++|+.+|.++.+.|+.++|.++|..++++.+.+|-
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999888888 999999999999999999999999999999999999999999888763
No 71
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=1.3e-18 Score=146.41 Aligned_cols=246 Identities=12% Similarity=0.057 Sum_probs=149.1
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh-----------------------
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE----------------------- 69 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------- 69 (265)
+...|.+.|++++|..+|++.. +.+...|..+...|.+.|++++|+..|++..+
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 3445555555555555555442 23445555555555555555555555555544
Q ss_pred ------------cC-CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc-
Q 024618 70 ------------AE-PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM- 135 (265)
Q Consensus 70 ------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 135 (265)
.. +.+..++..+...|.+.|++++|...|++..+.+..........+...|+.++|+++|+++.+.
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 32 2233344444445555555555555555443321111111144555556666666666655543
Q ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618 136 -SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 136 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
.|+ ...+..+...+...|..++|..+|+.+.+..+- +...+..+...+.+.|++++|.+.+++. ...|+ ..+|.
T Consensus 422 ~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~ 498 (697)
T PLN03081 422 VAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWA 498 (697)
T ss_pred CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHH
Confidence 232 444555555556666666666666665543221 2345666777777777888887777653 22333 56788
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.+...+...|+.+.|...+++.+++.|++...+..++.+|.+.|++++|.++
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 8888888999999999999999999999999999999999999999998765
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.9e-19 Score=133.53 Aligned_cols=234 Identities=18% Similarity=0.143 Sum_probs=204.0
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHH------------hcC---
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH------------EAE--- 71 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~--- 71 (265)
.+.|..++..+...|+|++|....++.++.+|..+......+.++..+++..+|.+.++..- .+.
T Consensus 83 a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~ 162 (486)
T KOG0550|consen 83 ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSH 162 (486)
T ss_pred hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccc
Confidence 45677899999999999999999999999999999999999999999988888876665221 011
Q ss_pred ---CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH-----
Q 024618 72 ---PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA----- 140 (265)
Q Consensus 72 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 140 (265)
|....+...-+.|+...|++++|...--..+++++.+...+ +.++....+.+.++..|++++.++|+..
T Consensus 163 s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 163 SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 22334566678899999999999999999999999988777 8899999999999999999999999764
Q ss_pred -------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618 141 -------DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 141 -------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 209 (265)
..+..-|.-.++.|++..|.+.|..++.++|++ ...+.+++.+....|+..+|+..++.+++++|....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 356677888999999999999999999999987 456888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
++...|.|+..+++|++|++.|+++++...+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998666
No 73
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=2.1e-17 Score=141.88 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=133.7
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-CChHHHHhhhhhhhhhhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE-PTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 90 (265)
+...+.+.|++++|..+|+++.+... .+...|..+...|.+.|++++|+..|..+.+.. ..+..++..+...+.+.|+
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~ 557 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 34455556666666666666555432 245555556666666666666666666654432 1134455555566666666
Q ss_pred HHHHHHHHHHHHhc----CCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 91 QAAALKYLYGWLRH----HPKYGTIA--PPELSDSLYYADVARLFVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 91 ~~~A~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
+++|.+.+...... .|+..... ...+.+.|++++|.++|+.+.+.. +.+...|..+...|.+.|++++|+..|
T Consensus 558 ~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66666666655432 22211111 445555666666666666665543 233455555666666666666666666
Q ss_pred HHHHhh--CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc--C
Q 024618 164 QTALKL--KPQDYSLWNKLGATQANSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAM--N 238 (265)
Q Consensus 164 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~ 238 (265)
+++.+. .|+ ...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+. .
T Consensus 638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 655543 222 3445555555555555555555555555432 123445555555556666666666665555432 2
Q ss_pred CCCchhHHHHHHHHHHhCCccccccc
Q 024618 239 PKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
|+ ...|..+...|.+.|+.++|.++
T Consensus 717 Pd-vvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 717 PT-VSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 32 44455555555555555555543
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.82 E-value=4.5e-18 Score=132.84 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=214.5
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.+|..+.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|..+...++..++.+...|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
.+|++|+++|..++...|++..++ +.+..+.++++.....-.+.++..|..-..|...+..+.-.|++..|...++.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888 77888899999999999999999999999999999999999999999999988
Q ss_pred HHhhC---CCC-----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 166 ALKLK---PQD-----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 166 ~~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
..+.. |+. .........+..+.|.+++|.+.+..--..--+........|.++.++|+.++|...|...+..
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 87764 322 2345555667778888888888776543222233445566899999999999999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 024618 238 NPKADNAWQYLRISLR 253 (265)
Q Consensus 238 ~~~~~~~~~~l~~~~~ 253 (265)
+|++...+..+-.++.
T Consensus 249 nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALG 264 (700)
T ss_pred CchhHHHHHHHHHHHH
Confidence 9999887777666664
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.82 E-value=9.8e-18 Score=118.43 Aligned_cols=126 Identities=20% Similarity=0.298 Sum_probs=116.8
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhhcC--cHHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ-ANSVQ--SADAIL 195 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~ 195 (265)
.++.++++..++++++.+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455678888899999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
.++++++.+|+++.++..+|.++...|++++|+.+++++++..|.+..-
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999999999999999999999999999999998876543
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=7.3e-17 Score=138.58 Aligned_cols=251 Identities=11% Similarity=-0.009 Sum_probs=209.8
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-ChHHHHhhhhhhhhhhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP-TNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 90 (265)
.-..+...|++++|..+++++.+... .+...+..+...|.+.|+.++|..+|+++.+... .+...|..+...|.+.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 34566788999999999999887653 3567888899999999999999999999987653 367888999999999999
Q ss_pred HHHHHHHHHHHHhcC--CCCCCCc--hhhhhhhhchHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 91 QAAALKYLYGWLRHH--PKYGTIA--PPELSDSLYYADVARLFVEAARM----SPEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
+++|+..|....... |+..... ...+.+.|++++|.+++.++... .|+ ...+..+...|.+.|++++|.+.
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999887643 3322211 77788899999999999998753 454 67888889999999999999999
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-
Q 024618 163 FQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDL--KPNYVRAWANMGISYANQGMYEESVRYYVRALAMN- 238 (265)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~- 238 (265)
|+++.+.+ +.++..|..+...|.+.|++++|+..|++.... .|+ ...+..+...+.+.|++++|.+.++.+.+..
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99998875 456788999999999999999999999998876 344 5788889999999999999999999998864
Q ss_pred CCCchhHHHHHHHHHHhCCcccccccC
Q 024618 239 PKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+-+..++..+..+|.+.|++++|.++|
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 234678899999999999999998764
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=7.4e-19 Score=118.02 Aligned_cols=107 Identities=16% Similarity=0.031 Sum_probs=92.7
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
.+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 33444445555566666777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 195 LAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
..|++++...|+++..+..+|.+....
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999998888876544
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.80 E-value=2.4e-17 Score=128.63 Aligned_cols=202 Identities=18% Similarity=0.129 Sum_probs=132.6
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
+..+|..+...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++..++.. +..+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence 3445555555566666655555555555433 2344445555666666666666666666666665544443 33333
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
..|+...+ ...+...+.......|........+|.++...|++++|+..++++
T Consensus 88 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 88 GLGDFSGM---------------------------RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred HhcccccC---------------------------chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33322222 222333333333445666777778888888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch----hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV----RAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
++.+|+++.++..+|.++...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..+++++...|
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 888888888888888888888888888888888888776433 2455788888888888888888888876655
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.79 E-value=8.5e-18 Score=131.10 Aligned_cols=197 Identities=17% Similarity=0.077 Sum_probs=146.1
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAP 113 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 113 (265)
+|+.+.++..+|.++...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~---------------- 65 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALAL---------------- 65 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHH----------------
Confidence 57777777777777777777777777777777665543 33445555555556665555554
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR----QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (265)
+++++..+|++..++.. +..+...| ....+...+.......|........+|.++...|+
T Consensus 66 ---------------~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 66 ---------------LEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred ---------------HHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 45555556666655554 44444444 44444444444335567777788889999999999
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhCCcccccccC
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN----AWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++. .+..++.++...|++++|+..|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875432 4567999999999999997653
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.79 E-value=2.3e-16 Score=125.56 Aligned_cols=252 Identities=12% Similarity=0.046 Sum_probs=182.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh-
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE- 88 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~- 88 (265)
.+-+..++...|++++|+..+.+....-++........|.++..+|++++|...|...++.+|++...+..+..+....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 4567889999999999999999988888888889999999999999999999999999999999999999888887333
Q ss_pred ----hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618 89 ----LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYAD-VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 89 ----~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (265)
.+.+.-...|+......|...... ...+..-..+.. +..++...+.. .-|.++..+-.+|....+..-...
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHH
Confidence 356777888998888888765543 222222223333 33344444433 345555555555553333332223
Q ss_pred HHHHHHhh---------------CCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618 162 SFQTALKL---------------KPQD--YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY 224 (265)
Q Consensus 162 ~~~~~~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (265)
.+...... .|.. ..+++.++..|...|++++|+++++++|+..|..++.+...|.++.+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 33332211 0111 134577788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 225 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.+|.++++.+-.+++.+.-.....+..+.+.|+.++|.+
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888877777777888888888887765
No 81
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.8e-16 Score=110.80 Aligned_cols=201 Identities=16% Similarity=0.090 Sum_probs=138.1
Q ss_pred CChHHHHHHHHHHHHhC------CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618 21 GLLSEAVLALEAEVLKN------PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA 94 (265)
Q Consensus 21 ~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 94 (265)
.+.++-+++....+... |+....+-.+..+....|+.+-|..++++.....|.+..+-...|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 44556666666555432 222334445566667777888888888887777788877777778888888888888
Q ss_pred HHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024618 95 LKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP 171 (265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (265)
+++|+..++.+|.+..+. ..+...+|+.-+|++.+...++..+.|.++|..++.+|...|++++|.-++++++-+.|
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 888877777777766665 45555666666777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 172 QDYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
.++..+..+|.+++-+|. ..-|.++|.++++++|.+..+++.+-.+....
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 777777777777666553 44567777777777776666666655554433
No 82
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.78 E-value=8.1e-17 Score=135.72 Aligned_cols=249 Identities=14% Similarity=0.032 Sum_probs=160.0
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCC------------------------------------ChHHHHHHHHHHh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPE------------------------------------NSEGWRLLGIAHA 52 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~ 52 (265)
.|-.....+.+.|++++|+.+|+++.+..+. +..++..+...|.
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 3445666777788888888888887654321 1123344566777
Q ss_pred hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc--CCCCCCCc--hhhhhhhhchHHHHHH
Q 024618 53 ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH--HPKYGTIA--PPELSDSLYYADVARL 128 (265)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~a~~~ 128 (265)
+.|++++|...|++.. +.+..+|..+...|...|++++|+..|++..+. .|+..... ...+...|++++|.+.
T Consensus 271 k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 271 KCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 7888888888877653 346677888888888888888888888877653 23322111 5556666777777777
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CC
Q 024618 129 FVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL--KP 205 (265)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 205 (265)
+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|+.++|++.|++..+. .|
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77666654 34455666677777777777777777766543 24456777777777777777777777776653 23
Q ss_pred cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHhCCccccccc
Q 024618 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPK--ADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+ ..++..+...+.+.|..++|.++|+.+.+..+- +...+..+...+.+.|+.++|.++
T Consensus 425 d-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 425 N-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred C-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 3 345555666666777777777777766543221 134556666677777777666543
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.78 E-value=3.7e-17 Score=109.49 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=115.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
++..++.+|.++...|++++|+..++++++.+|++......
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999999999999999999999999998775443
No 84
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.9e-16 Score=110.63 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=167.7
Q ss_pred cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q 024618 70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVL 146 (265)
Q Consensus 70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 146 (265)
..|+...++-....+....|+.+.|..++++.....|.+.... +..+...|.+++|+++|+..++-+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 4566667777778888899999999999999999889887766 8889999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC---C
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG---M 223 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~ 223 (265)
..+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++++-+.|.++-.+..+|.+++-+| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877 5
Q ss_pred cHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 224 YEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 224 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
.+-|.++|.++++++|.+..+++.+-.+-..
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 7789999999999999888888776555443
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.77 E-value=5e-16 Score=121.61 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=107.0
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
-+|..+...|+-++|......++..++.+...|..+|.++....+|++|+++|+.|+.++|+|..++..++....+++++
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 45777777777777777777777777777777777777777777777777777777777777777776666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcC---CC---------------------------
Q 024618 92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMS---PE--------------------------- 138 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~---~~--------------------------- 138 (265)
+.....-.+.++..|.....| +......|++..|...++...+.. |.
T Consensus 126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 666666666666655554444 444444455554444444333322 11
Q ss_pred ------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024618 139 ------------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKL 180 (265)
Q Consensus 139 ------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 180 (265)
........+.++..+++.++|...+...+..+|++...+..+
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 111223345566666777777777777777777665444333
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.77 E-value=6.9e-17 Score=113.66 Aligned_cols=179 Identities=21% Similarity=0.215 Sum_probs=132.6
Q ss_pred cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHH
Q 024618 54 NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFV 130 (265)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~ 130 (265)
..+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|++.... +......|++.+|+..+.
T Consensus 46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334455777777777888988888 8888888888888888888888777777665444 666677777777777777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
++....|+++.+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+
T Consensus 125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777666666777
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHH
Q 024618 211 WANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
..+++.+...+|++++|.....+
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhccc
Confidence 77777777777777777666544
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.76 E-value=3.2e-16 Score=110.31 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=167.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHH
Q 024618 19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL 98 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 98 (265)
...+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+..++..+|......|++..|+..+
T Consensus 45 ~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 45 AMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3344455666677777889999999 999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618 99 YGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS 175 (265)
Q Consensus 99 ~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 175 (265)
.++....|++...+ |.++.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 99999999999888 999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 176 LWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
+..+++.+....|++++|.....+-+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999999999999988766543
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.76 E-value=3.3e-16 Score=110.69 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=118.9
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHH
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAA 93 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 93 (265)
+-.|+..|+++......++.. +|.. -+...++.++++..++++++.+|++++.|..+|.++...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456777888777544432221 1211 11136677888888899999999999999999888888888777
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHhhC
Q 024618 94 ALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY-NLSRQ--YDKAIESFQTALKLK 170 (265)
Q Consensus 94 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~ 170 (265)
|+..|+ +++++.|+++.++..+|.++ ...|+ +++|...++++++.+
T Consensus 92 A~~a~~-------------------------------~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d 140 (198)
T PRK10370 92 ALLAYR-------------------------------QALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD 140 (198)
T ss_pred HHHHHH-------------------------------HHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 765554 55555677889999999874 67777 589999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618 171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 209 (265)
|+++.++..+|..+...|++++|+..|+++++..|.+..
T Consensus 141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999998887643
No 89
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=5.1e-15 Score=109.93 Aligned_cols=249 Identities=15% Similarity=0.118 Sum_probs=183.9
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-hHHHHhhhhhhhhhhhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-NLEVLLSLGVSHTNELE 90 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 90 (265)
..|..-+..|+|.+|.+...+.-+..+.....+..-+.+..+.|+++.+-.++.++-+..++ ...+...++.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34556666777888777777766555555556666677777777777777777777776333 34566666777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc--------------------------------
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM-------------------------------- 135 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 135 (265)
++.|.....++++..|.++... ..+|...|++.+....+.+.-+.
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 7777777777777777777665 66666667666665555443221
Q ss_pred ----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC
Q 024618 136 ----------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP 205 (265)
Q Consensus 136 ----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 205 (265)
-.+++.+...++.-+...|+.++|.+....+++..-+. .....+ -...-++...=++..++.+...|
T Consensus 249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLI--PRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHH--hhcCCCCchHHHHHHHHHHHhCC
Confidence 12345667777888899999999999999999875442 322222 23456888888899999999999
Q ss_pred cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 206 NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+++..+..+|..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999999999999999998887 66778899999999999887653
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.75 E-value=2.5e-16 Score=124.90 Aligned_cols=216 Identities=14% Similarity=0.173 Sum_probs=193.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
..+|..+...|-...|+.++++. ..|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 35789999999999999999976 5677788999999999999999999999 77789999999999988888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618 91 QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK 170 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (265)
+++|.+..+..-.. -...++......+++.++.+.++..++++|-....|+.+|.+..+.++++.|.+.|..++...
T Consensus 473 yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 473 YEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 88888877655443 111224445567999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 171 PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
|++..+|.+++..|.+.++..+|...++++++.+-.+..+|-+.-.+..+.|.+++|+..+.+.+.+.
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998889999999999999999999999999998764
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.75 E-value=2.3e-16 Score=128.79 Aligned_cols=233 Identities=16% Similarity=0.156 Sum_probs=192.4
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618 20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (265)
..+...|...|-++++.+|.-..++..+|.+|...-+...|..+|+++.++++.+..+.-..+..|....+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHhcCCCCCCC-----chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024618 100 GWLRHHPKYGTI-----APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY 174 (265)
Q Consensus 100 ~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 174 (265)
..-+..|..... .|..+...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 666665543221 388888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-------hhHHHHHHHHHhcCCcHHHHHHHHHHHhc-------C-C
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYV-------RAWANMGISYANQGMYEESVRYYVRALAM-------N-P 239 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~-~ 239 (265)
...+..+.+....|+|.+|+..+...+....... +.+..++..+...|=+.+|.++++++++. . -
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998887654433 44445555555556666666666666543 2 3
Q ss_pred CCchhHHHHHHHH
Q 024618 240 KADNAWQYLRISL 252 (265)
Q Consensus 240 ~~~~~~~~l~~~~ 252 (265)
++...|..++.+.
T Consensus 711 ~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 711 SDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHhHHH
Confidence 3444555555443
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.74 E-value=2.8e-16 Score=128.36 Aligned_cols=244 Identities=17% Similarity=0.194 Sum_probs=198.7
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH--------------------------hhcCcHHHHHHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAH--------------------------AENDDDQQAIAA 63 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------~~~~~~~~A~~~ 63 (265)
....|.+......|.+|...+.......- +.+.+..+..++ ...++...|...
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~-nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a 480 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSF-NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA 480 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhc-CchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34556677777888888887776655441 111111111111 123457789999
Q ss_pred HHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH
Q 024618 64 MMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDA 140 (265)
Q Consensus 64 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 140 (265)
|-++++++|....++..+|.+|....+...|..+|+++.++++.+.... +..+.....++.|....-..-+..|...
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999999999999999999999999988777 7888999999999998777777666433
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618 141 --DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218 (265)
Q Consensus 141 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (265)
..|..+|..|...++...|+..|+.++..+|.+.+.|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+.
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 219 ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 219 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
..+|+|.+|+..+...+............++.++.+
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999888766655555556655554
No 93
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=9.4e-17 Score=115.11 Aligned_cols=119 Identities=22% Similarity=0.419 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (265)
+-+..-|.-+...++|.+|+..|.++|+++|.++..|.+.+.+|.++|+++.|++.++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34555677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcc
Q 024618 221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (265)
+|++++|++.|+++++++|++...+..|..+-.++++.+
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998888888888877777665
No 94
>PLN03077 Protein ECB2; Provisional
Probab=99.73 E-value=1.3e-15 Score=131.25 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=182.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHh-----------
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL----------- 79 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------- 79 (265)
-.+...|.+.|++++|..+|++..+ .+...|..+...|...|+.++|+..|+++....+.+...+.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 3456788889999999999987643 35667888888899999999999999998754333332222
Q ss_pred ------------------------hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHH
Q 024618 80 ------------------------SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEA 132 (265)
Q Consensus 80 ------------------------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~ 132 (265)
.+...|.+.|+.++|...|+.. +.+...+ ...+...|+.++|+++|+++
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2335666677777777777665 2222223 66677888888888888887
Q ss_pred Hhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618 133 ARM--SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV 208 (265)
Q Consensus 133 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 208 (265)
.+. .|+ ...+..+...+...|.+++|..+|+.+.+..+ .+...+..+..++.+.|++++|.+.+++. ...|+ +
T Consensus 581 ~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~ 657 (857)
T PLN03077 581 VESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-P 657 (857)
T ss_pred HHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-H
Confidence 764 354 44455566677888888888888888874432 23467888888888999999998888875 34454 5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.+|..+-..+...|+.+.+....+++++++|++...+..++.+|...|++++|.++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 67777777788888899999899999999999999999999999999999988653
No 95
>PLN03077 Protein ECB2; Provisional
Probab=99.73 E-value=2e-15 Score=130.21 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=106.8
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc-CCCCHH-------------
Q 024618 76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM-SPEDAD------------- 141 (265)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~------------- 141 (265)
.++..+...|.+.|++++|.+.|++..+.+..........+...|+.++|+..|+++... .|+...
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 344555566666666666666666554322111111144555666666666666666533 222211
Q ss_pred ---------------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 142 ---------------------VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 142 ---------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
+...+...|.+.|+.++|...|+.. +.+..+|..+...|...|+.++|++.|++.
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112335556666666666666654 345666777777777777777777777776
Q ss_pred Hhc--CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHhCCccccccc
Q 024618 201 LDL--KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK--ADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 201 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.+. .|+ ..++..+-..+.+.|+.++|..+|+.+.+..+- +...+..+..++.+.|+.++|.++
T Consensus 581 ~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 581 VESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 653 333 344555556677777777777777777643221 235666677777777777777654
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.73 E-value=9.6e-16 Score=127.50 Aligned_cols=204 Identities=10% Similarity=0.045 Sum_probs=144.5
Q ss_pred hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618 36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE 115 (265)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 115 (265)
.+|.+..+|..+...+...+++++|+..++.+++..|+....++.+|.++...+++.++.-. .++...+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------ 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence 34777778888888888888888888888888888888888888888888888877777655 5555444332
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
++ .+++++...+...+.+..+++.+|.+|-++|+.++|...++++++.+|+++.++.++|..+... +.++|++
T Consensus 98 -----~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 98 -----KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred -----ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 22 4445555555556666667777777777777777777777777777777777777777777666 6666666
Q ss_pred HHHHHHhc--------------------CCcchhh--------HHHHH------------HHHHhcCCcHHHHHHHHHHH
Q 024618 196 AYQRALDL--------------------KPNYVRA--------WANMG------------ISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 196 ~~~~~~~~--------------------~~~~~~~--------~~~l~------------~~~~~~g~~~~A~~~~~~a~ 235 (265)
++.+++.. +|.+.+. ...++ ..|...++|++++..++.++
T Consensus 171 m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 171 YLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 66666543 3443322 11223 67777888999999999999
Q ss_pred hcCCCCchhHHHHHHHHHH
Q 024618 236 AMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~ 254 (265)
+.+|.+..+...++.+|..
T Consensus 251 ~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 251 EHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hcCCcchhhHHHHHHHHHH
Confidence 9999998888889888873
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.72 E-value=6.6e-16 Score=101.81 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=103.2
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618 131 EAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 131 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 209 (265)
....+. ++..+..+.+|..+...|++++|...|+-+...+|.++..|+++|.++..+|++++|+..|.+++.++|+++.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 334456 7778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
+++++|.|++..|+.+.|++.|+.++....+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998633
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.72 E-value=4.5e-16 Score=129.40 Aligned_cols=195 Identities=11% Similarity=0.043 Sum_probs=167.9
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------------
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------------ 75 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------ 75 (265)
..+..++..+...+++++|+..++..++..|+.+.+++.+|.++.+.++++++..+ .++...+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999988877666 6666655554
Q ss_pred -------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618 76 -------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIV 145 (265)
Q Consensus 76 -------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (265)
.+++.+|.||-.+|+.++|...|+++++.+|+++.++ |..+... +.++|+.++.+++..
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------- 178 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------- 178 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------
Confidence 8999999999999999999999999999999998887 7777777 999999999998865
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH--------HHH------------HHHHhhcCcHHHHHHHHHHHhcCC
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWN--------KLG------------ATQANSVQSADAILAYQRALDLKP 205 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~------------~~~~~~~~~~~A~~~~~~~~~~~~ 205 (265)
+...+++..+.+++.+.+..+|.+.+.+. .++ ..|...+++++++..++.+++.+|
T Consensus 179 ----~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 179 ----FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred ----HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 66677888899999999888888754422 223 667788999999999999999999
Q ss_pred cchhhHHHHHHHHH
Q 024618 206 NYVRAWANMGISYA 219 (265)
Q Consensus 206 ~~~~~~~~l~~~~~ 219 (265)
.+..+...++.+|.
T Consensus 255 ~n~~a~~~l~~~y~ 268 (906)
T PRK14720 255 KNNKAREELIRFYK 268 (906)
T ss_pred cchhhHHHHHHHHH
Confidence 99999999999997
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.71 E-value=5.2e-15 Score=122.03 Aligned_cols=143 Identities=8% Similarity=0.022 Sum_probs=98.9
Q ss_pred hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618 69 EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV 148 (265)
Q Consensus 69 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 148 (265)
...|.+++++..||.+....|.+++|... ++.+++..|++..++..++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~-------------------------------l~~~~~~~Pd~~~a~~~~a~ 128 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAV-------------------------------WRGIHQRFPDSSEAFILMLR 128 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHH-------------------------------HHHHHhhCCCcHHHHHHHHH
Confidence 34566666666666666666665555544 44445555666777777777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
++.+.+++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|.
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777777777777777777777777777777777777777767777777777777777777777777
Q ss_pred HHHHHHHhcCCCCc
Q 024618 229 RYYVRALAMNPKAD 242 (265)
Q Consensus 229 ~~~~~a~~~~~~~~ 242 (265)
..|+++++...+-.
T Consensus 209 ~~~~~a~~~~~~~~ 222 (694)
T PRK15179 209 DVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhhCcch
Confidence 77777776654433
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.71 E-value=3.9e-16 Score=128.54 Aligned_cols=142 Identities=11% Similarity=0.082 Sum_probs=132.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 124 DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
+++.-+.......|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33444445556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998654
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.70 E-value=9.5e-16 Score=121.64 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=180.7
Q ss_pred CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhh
Q 024618 39 ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPE 115 (265)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~ 115 (265)
........++..+...|-...|+..+++. ..|.....||...|+..+|.....+-++ .|.++..+ |.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34456677999999999999999999876 5566678899999999999999999998 44444333 444
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
.....-+++|.++.+. .+..+...+|......+++.++.+.++..++++|-....|+.+|.+..+.+++..|.+
T Consensus 467 ~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 4444444555444433 2355778888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
.|..++..+|++..+|.+++..|.+.|+..+|...++++++.+-++...|.+...+....|.+++|++.|
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988653
No 102
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=4.5e-16 Score=111.66 Aligned_cols=113 Identities=21% Similarity=0.314 Sum_probs=104.9
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
|.-++..++|.+|+..|.++++++|.++..+.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 66778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcH
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYE 225 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (265)
|++.|+++++++|++...+.+|..+-.+.++..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988888888887777655
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.69 E-value=5.9e-14 Score=111.94 Aligned_cols=250 Identities=18% Similarity=0.124 Sum_probs=181.1
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc-----CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN-----DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
.+|.++...|++++|...|..+++.+|++...+..+..+.... .+.+.-...|++.....|...... .+...+.
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~ 121 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFL 121 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccC
Confidence 5799999999999999999999999999999999988887333 356777888998888888654332 2222333
Q ss_pred hhhhHHHHH-HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc---------------CCCC--HHHHHH
Q 024618 87 NELEQAAAL-KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM---------------SPED--ADVHIV 145 (265)
Q Consensus 87 ~~~~~~~A~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~--~~~~~~ 145 (265)
.-..+.... .++...+... .|... -.++.......-...++...... .|.. ..+++.
T Consensus 122 ~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~ 199 (517)
T PF12569_consen 122 EGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF 199 (517)
T ss_pred CHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence 333444433 3444444332 22222 22222222222222222222211 1111 245688
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcH
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYE 225 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (265)
++..|...|++++|+.++++++...|..++.+...|.++...|++.+|...++.+..+++.+-.+-...+..+.+.|+.+
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHhcCCCCc-------hhH--HHHHHHHHHhCCccccccc
Q 024618 226 ESVRYYVRALAMNPKAD-------NAW--QYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 226 ~A~~~~~~a~~~~~~~~-------~~~--~~l~~~~~~~~~~~~A~~~ 264 (265)
+|.+.+..-...+.+.. -.| ...|.+|.+.|++..|+.-
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999987765542111 234 3478999999999888754
No 104
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.69 E-value=2e-16 Score=118.15 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=182.5
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHHhhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSE----GWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVLLSL 81 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l 81 (265)
..|..+++.|++...+.+|+.+++...++.. +|..+|++|+.+++|++|+++-..=+.+ .-..+.+.-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 4588899999999999999999998877643 6778999999999999999875543322 12234566788
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhc--------------------hHHHHHHHHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLY--------------------YADVARLFVEA 132 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--------------------~~~a~~~~~~~ 132 (265)
|..+..+|.+++|+.+..+-+.......+-. +.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 8999999999999988887765433221111 334433332 44555666655
Q ss_pred HhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 133 ARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 133 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 5543221 2466778888888999999998887776653322 367888999999999999999999887
Q ss_pred HhcC----Cc--chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC------CCchhHHHHHHHHHHhCCcccccc
Q 024618 201 LDLK----PN--YVRAWANMGISYANQGMYEESVRYYVRALAMNP------KADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 201 ~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
+.+. .. .+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||.++..+|..++|..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 6542 22 245677899999999999999999988776532 234677788999888888877753
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.68 E-value=4.9e-16 Score=115.81 Aligned_cols=161 Identities=17% Similarity=0.073 Sum_probs=76.7
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024618 77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS 153 (265)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (265)
.....|.++...|++++|++.+.+. .+.... ..++...++++.|.+.++.+.+.+.+..-+....+.+.+..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 3344444455555555555444332 111111 44555555555555555555555444444333334444333
Q ss_pred c--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc-HHHHHH
Q 024618 154 R--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY-EESVRY 230 (265)
Q Consensus 154 ~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 230 (265)
| .+.+|...|++..+..+.++..+..++.++..+|++++|.+.+++++..+|+++.++.+++.+...+|+. +.+.++
T Consensus 179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3 3555555555555544555555555555555555555555555555555555555555555555555554 334444
Q ss_pred HHHHHhcCCCCc
Q 024618 231 YVRALAMNPKAD 242 (265)
Q Consensus 231 ~~~a~~~~~~~~ 242 (265)
+.+....+|+++
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 444444555543
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.67 E-value=8.5e-15 Score=98.04 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=73.0
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 024618 29 ALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY 108 (265)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 108 (265)
.+++++..+|++..+...+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..++++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----- 79 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA----- 79 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 455666666666666666666666666777776666666666666666666666666666665555544433333
Q ss_pred CCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618 109 GTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS 175 (265)
Q Consensus 109 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 175 (265)
.+|.++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 80 --------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 --------------------------LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------------------cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34445666666666666666666666666666666665544
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=1.2e-13 Score=102.84 Aligned_cols=224 Identities=16% Similarity=0.039 Sum_probs=182.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPE-NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
++.-+...-..|+++.|-.++.++-+..++ ...+....+.+....|+++.|..-..++++..|.++.+......+|...
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence 345567777889999999999988777443 3456777888889999999999999999999999999998888999999
Q ss_pred hhHHHHHHHHHHHHhcC------------------------CC---------------------CCCCchhhhhhhhchH
Q 024618 89 LEQAAALKYLYGWLRHH------------------------PK---------------------YGTIAPPELSDSLYYA 123 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~------------------------~~---------------------~~~~~~~~~~~~~~~~ 123 (265)
|++.+....+.+..+.. ++ ....++.-+..+|+.+
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChH
Confidence 98888777766543311 11 1111166788899999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 124 DVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
+|.+..+.+++..-+.. ....++ ...-++...-++..++.++..|++|..+..+|.++.+.+.+.+|..+|+.+++.
T Consensus 281 ~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 281 EAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 99999999998765533 222222 346788999999999999999999999999999999999999999999999998
Q ss_pred CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 358 ~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 358 RPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 887 578889999999999999999999999854
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.66 E-value=6.2e-14 Score=102.19 Aligned_cols=81 Identities=25% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHH---HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHHhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEG---WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVLLS 80 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 80 (265)
....+..|...+..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++ .+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3446788999999999999999999999999987654 48899999999999999999999999988764 57777
Q ss_pred hhhhhhh
Q 024618 81 LGVSHTN 87 (265)
Q Consensus 81 la~~~~~ 87 (265)
+|.++..
T Consensus 112 ~g~~~~~ 118 (243)
T PRK10866 112 RGLTNMA 118 (243)
T ss_pred HHHhhhh
Confidence 7776543
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.66 E-value=1.7e-15 Score=112.95 Aligned_cols=242 Identities=12% Similarity=0.080 Sum_probs=179.4
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPE-NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
+-..+.++-.|+|..++...+ ....+|. .......+.+++..+|+++..+.-... ..+....+...++..+...+
T Consensus 5 Lf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 5 LFTVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp THHHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTST
T ss_pred HHHHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCcc
Confidence 344677888999999998777 3333332 344667889999999998876655433 22334455566776666656
Q ss_pred hHHHHHHHHHHHHhcCCCCCC-Cc----hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGT-IA----PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ 164 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (265)
+.+.++..++..+........ .. +.++...|++++|++.+.+. .+.+.......+++..++++.|.+.++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 677777777665544322111 11 78888999999999988764 567888888999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhc--CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 165 TALKLKPQDYSLWNKLGATQANSV--QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
.+.+.+.+..-+....+.+....| ++.+|...|++..+..+.++..+..++.++..+|++++|.+.+.+++..+|.++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 998888776655555566666655 599999999998888788889999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCcccc
Q 024618 243 NAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~A 261 (265)
+++.+++.+...+|+..++
T Consensus 236 d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHhCCChhH
Confidence 9999999999999988543
No 110
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.66 E-value=2.4e-14 Score=102.06 Aligned_cols=175 Identities=18% Similarity=0.208 Sum_probs=109.0
Q ss_pred CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---H
Q 024618 3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---E 76 (265)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~ 76 (265)
|-.....++..|...+..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++ .
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 34455667899999999999999999999999998875 46899999999999999999999999999998864 6
Q ss_pred HHhhhhhhhhhhhh-----------HHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618 77 VLLSLGVSHTNELE-----------QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIV 145 (265)
Q Consensus 77 ~~~~la~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (265)
+++.+|.+++.... ..+|+..|+..+...|++... .+|...+..+-. .-..--+.
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~-----------~~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA-----------EEAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH-----------HHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH-----------HHHHHHHHHHHH---HHHHHHHH
Confidence 88888888765532 235555555555555554321 111111111100 00122334
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCcH
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQSA 191 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 191 (265)
+|..|.+.|.+..|+..++.+++..|+.+ .++..++.++...|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 45566666666666666666666666553 34555555555555555
No 111
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.64 E-value=1.1e-14 Score=112.44 Aligned_cols=113 Identities=12% Similarity=0.192 Sum_probs=92.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (265)
+...|...+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618 223 MYEESVRYYVRALAMNPKADNAWQYLRISLRYA 255 (265)
Q Consensus 223 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 255 (265)
++++|+..|+++++++|+++.+...++.+..++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888888888888888888888877777776655
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.2e-13 Score=101.71 Aligned_cols=136 Identities=17% Similarity=0.077 Sum_probs=69.8
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh--------------cCC-----
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE--------------AEP----- 72 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~----- 72 (265)
..|.+++..|+|++|+..|.-+...+.-+.+.+..++.|++-+|.|.+|.....++-+ ++.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 3455666666666666666655554444455566666666666666666554443311 000
Q ss_pred -------ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHH
Q 024618 73 -------TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADV 142 (265)
Q Consensus 73 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 142 (265)
+..+-...++.+.+..-.+.+|+..|.+++..+|+..... +.++.+..-++-+.+.+.-.++..|+.+.+
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 0112223344444444555556666666655555543332 555555555555555555555555555444
Q ss_pred HHHHH
Q 024618 143 HIVLG 147 (265)
Q Consensus 143 ~~~l~ 147 (265)
...++
T Consensus 222 ~NLka 226 (557)
T KOG3785|consen 222 KNLKA 226 (557)
T ss_pred HHHHH
Confidence 33333
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.3e-14 Score=108.39 Aligned_cols=231 Identities=17% Similarity=0.150 Sum_probs=170.2
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
++.+..-..+...|+|++|.+...+++...|++..+....-.+..+.+.|++|+...+.-......+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 3556667778889999999999999999999999999999999999999999985544432222111 222788999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
.+..++|+..++.+-..++......++++..++++++|+..|+...+.+.++.+........-.... ..+ . ..+..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSV 167 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhc
Confidence 9999999999982222222122233999999999999999999999887776655443332221111 011 1 23334
Q ss_pred hhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--------Cc--c-----hhhHHHHHHHHHhcCCcHHHHHHH
Q 024618 168 KLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLK--------PN--Y-----VRAWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 168 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~--~-----~~~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
...|. +.+.+++.+.++...|+|.+|++.+++++.+. .+ . ..+...++.++..+|+.++|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44444 56789999999999999999999999994431 11 1 235677999999999999999999
Q ss_pred HHHHhcCCCCch
Q 024618 232 VRALAMNPKADN 243 (265)
Q Consensus 232 ~~a~~~~~~~~~ 243 (265)
...++.+|-+..
T Consensus 248 ~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 248 VDIIKRNPADEP 259 (652)
T ss_pred HHHHHhcCCCch
Confidence 999999887653
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.62 E-value=9.8e-15 Score=96.31 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=87.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
.+..|..++..|++++|.+.|+-+...+|.+...|+.||.++..+|++.+|+..|.+++.++|+++..++++|.|++..|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC
Q 024618 90 EQAAALKYLYGWLRHH 105 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~ 105 (265)
+.+.|.+.|+.++...
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998888765
No 115
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.60 E-value=9.3e-13 Score=96.07 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=123.2
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHH---HhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEV---LLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
++..++..|...+..|++++|++.|++++...|..+.+ .+.+|.+++..+++++|+..+++.++..|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-------- 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------- 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC--------
Confidence 56778899999999999999999999999999987654 4899999999999999999999999999985
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc------------------CHHHHHHHHHHHHhhCCCCHH---
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR------------------QYDKAIESFQTALKLKPQDYS--- 175 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~~~~~~~~~~~--- 175 (265)
|+.+.+++.+|.++...+ ...+|+..|++.++..|++..
T Consensus 103 --------------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~ 162 (243)
T PRK10866 103 --------------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD 162 (243)
T ss_pred --------------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 444566666665543332 124677788888888887632
Q ss_pred --------------HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 176 --------------LWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 176 --------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
--..+|..|.+.|.+..|+..++.+++..|+. .+++..++.+|..+|..++|......
T Consensus 163 A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 163 ATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 12345566677777777777777777666654 35666677777777777777665543
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.58 E-value=9.3e-13 Score=93.94 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
++..++..|...+..|++.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------- 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------- 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-------
Confidence 46788999999999999999999999999988865 67899999999999999999999999999998854
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhhCCCCHH
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-----------RQYDKAIESFQTALKLKPQDYS 175 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~ 175 (265)
..+.+++.+|.++... +...+|+..|+..+...|+++.
T Consensus 77 ---------------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 77 ---------------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred ---------------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 3345555555554433 3445788888888888888753
No 117
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.5e-12 Score=96.78 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=88.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------------------------------
Q 024618 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD--------------------------------------- 173 (265)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------------------- 173 (265)
++.+|.+.++|+....+-...|+.+.-.+.|++++...|..
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44456566667766666666677777777777777655432
Q ss_pred ---------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 174 ---------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 174 ---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
+.+|...+.....+.+...|.+.+-.++...|.+ ..+.....+-.++++++.....|++-++..|.+..+
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 1223333333444455555555555555555543 334445555667888999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccccccC
Q 024618 245 WQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 245 ~~~l~~~~~~~~~~~~A~~~~ 265 (265)
|...|.+-..+|+.+.|..+|
T Consensus 474 W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998887654
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.57 E-value=2.9e-12 Score=98.10 Aligned_cols=150 Identities=19% Similarity=0.172 Sum_probs=115.5
Q ss_pred CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618 72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV 148 (265)
Q Consensus 72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 148 (265)
|....+++..+..++..|++++|+..+...++..|+++..+ +.++...++..+|.+.+++++..+|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 55566666666666666666666666666666666655554 566666666677777777777788888888999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
.++..|++.+|+..++..+..+|+++..|..++..|..+|+..+|... .+..+...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999998887666543 456667788888999
Q ss_pred HHHHHHHhcC
Q 024618 229 RYYVRALAMN 238 (265)
Q Consensus 229 ~~~~~a~~~~ 238 (265)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 8888888765
No 119
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.56 E-value=1.6e-13 Score=106.07 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=100.7
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
|......|++++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34456677888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQG 222 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (265)
|+..|++++.++|+++.+...++.+..++.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988888866653
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=2.8e-12 Score=98.12 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=121.5
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
+......|++++|+..+...+...|+|+..+...+.++...|+.++|.+.+++++..+|+.+..+.++|..+.+.|++.+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 44455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 251 (265)
|+..++..+..+|+++..|..++..|..+|+..+|.....+..........+...+..+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888887766655554444333
No 121
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.54 E-value=4e-13 Score=87.86 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWAN 213 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~ 213 (265)
+.+++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 5789999999999999999999999999988875 578999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 214 MGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
+|.++...|++++|+..++++++..|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999866543
No 122
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.54 E-value=1.8e-13 Score=102.65 Aligned_cols=250 Identities=16% Similarity=0.108 Sum_probs=185.1
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLK------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEV 77 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~ 77 (265)
+-++|..|+-.++|++|+++-..=+.. .-....+--++|+++-.+|.|++|+.+..+-+.+... ...+
T Consensus 58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA 137 (639)
T KOG1130|consen 58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA 137 (639)
T ss_pred HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence 346789999999999999875432221 1223445667999999999999999999888765332 3568
Q ss_pred Hhhhhhhhhhhhh--------------------HHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHH
Q 024618 78 LLSLGVSHTNELE--------------------QAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARL 128 (265)
Q Consensus 78 ~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~ 128 (265)
++++|.+|...|+ ++.|.++|..-+++..+..+.. +..|.-.|+++.|+..
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~ 217 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF 217 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence 9999999976653 4456666666666544433222 7778889999999988
Q ss_pred HHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHhhcCcHHHHHH
Q 024618 129 FVEAARMSPE------DADVHIVLGVLYNLSRQYDKAIESFQTALKLK----P--QDYSLWNKLGATQANSVQSADAILA 196 (265)
Q Consensus 129 ~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~A~~~ 196 (265)
-+.-+.+... ...++.++|.++.-.|+++.|+++|++.+.+. . ..+...+.+|..|....++++|+.+
T Consensus 218 H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Y 297 (639)
T KOG1130|consen 218 HKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITY 297 (639)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7776665332 23678899999999999999999999887542 2 2356788999999999999999999
Q ss_pred HHHHHhcCC------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-----CC-CchhHHHHHHHHHHhCCcc
Q 024618 197 YQRALDLKP------NYVRAWANMGISYANQGMYEESVRYYVRALAMN-----PK-ADNAWQYLRISLRYAGRYP 259 (265)
Q Consensus 197 ~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~-~~~~~~~l~~~~~~~~~~~ 259 (265)
+.+-+.+.. ....+++.+|..+...|..++|+.+.++.++.. |. ...+..++...-..+|..+
T Consensus 298 h~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 298 HQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 998776632 235688899999999999999999998887652 22 2345566666666666543
No 123
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=4.8e-12 Score=91.31 Aligned_cols=242 Identities=17% Similarity=0.104 Sum_probs=158.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618 16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 95 (265)
.+++..+|.+||.++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|.........+..+++.+.+..|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 44888999999999999999999999999999999999999999999999999999998888888888888888888887
Q ss_pred HHHHHHHh----------------cCCCC----------------CCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCH
Q 024618 96 KYLYGWLR----------------HHPKY----------------GTIA---PPELSDSLYYADVARLFVEAARMSPEDA 140 (265)
Q Consensus 96 ~~~~~~~~----------------~~~~~----------------~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 140 (265)
........ ...++ .... +.+..+.|+++.|++-|+.+++...-++
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 76543322 11111 0000 5555666666666666666666666666
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHHHhhcCcH
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKL----KPQD-------------------------YSLWNKLGATQANSVQSA 191 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~~~~~~ 191 (265)
.+-++++.++++.|+++.|+++..++++. .|.- .+++...+.++++.++++
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 66666666666666666666666555543 2210 133444455566666666
Q ss_pred HHHHHHHHHHhcCCc-----chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618 192 DAILAYQRALDLKPN-----YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 192 ~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 261 (265)
.|.+.+.. +.|. +|..+.+++..- ..+++.+...-+.-.+.++|--++...++-.+|++..-++-|
T Consensus 259 AA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 259 AAQEALTD---MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred HHHHHhhc---CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHH
Confidence 65554432 2222 244455554332 234455555555556666665556666666666665555444
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2.2e-13 Score=98.01 Aligned_cols=211 Identities=14% Similarity=0.068 Sum_probs=170.6
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHH
Q 024618 51 HAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVAR 127 (265)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~ 127 (265)
+.+..+|..|++++..-.+..|.+...+..+|.||+...++..|..+|++.-...|+..... ++.+...+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 36677899999999999999999999999999999999999999999999999999866544 888889999999998
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
+.........-.......-+.+.+..+++..+....++.-. .+......+.|.+.++.|++++|++-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 88776543222234455556777788888888777665421 2567888999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhc----CCCC-------------------------chhHHHHHHHHHHhCCc
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRALAM----NPKA-------------------------DNAWQYLRISLRYAGRY 258 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~l~~~~~~~~~~ 258 (265)
+-.-++++.++++.|++..|+++....++. .|+. .+++...+.++++.|++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 889999999999999999999988877654 3321 13344456677788888
Q ss_pred ccccc
Q 024618 259 PNRGD 263 (265)
Q Consensus 259 ~~A~~ 263 (265)
+.|.+
T Consensus 258 eAA~e 262 (459)
T KOG4340|consen 258 EAAQE 262 (459)
T ss_pred HHHHH
Confidence 77765
No 125
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3e-12 Score=92.86 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc---CcHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV---QSADAILAYQ 198 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 198 (265)
.+.-+.-++.-+..+|++.+-|..+|.+|...|+++.|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5667778888899999999999999999999999999999999999999999999999999887654 3568999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
+++..+|.+..+.+.+|..++..|+|.+|+..++..++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999988654
No 126
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.7e-12 Score=99.42 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=161.0
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhh
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSL 120 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~ 120 (265)
..+.--..+...|+|++|.....+++...|++..+....-.+....++|++|+...++-..........+ +.+..+.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 3444445577889999999999999999999999999999999999999999955544433222222212 88999999
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++.+.++.+........-.... -.+ . ..+.
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~ 166 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQS 166 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHh
Confidence 9999999998 4566777788899999999999999999999998877766555443332221111 111 1 3333
Q ss_pred HhcCCc-chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-----CC--C--------chhHHHHHHHHHHhCCccccccc
Q 024618 201 LDLKPN-YVRAWANMGISYANQGMYEESVRYYVRALAMN-----PK--A--------DNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 201 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~--~--------~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+...|. ..+.+++.+.++...|+|.+|++.+++++.+. .+ + ..+...++.++..+|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444444 46788999999999999999999999994431 11 1 13567799999999999999765
Q ss_pred C
Q 024618 265 F 265 (265)
Q Consensus 265 ~ 265 (265)
|
T Consensus 247 y 247 (652)
T KOG2376|consen 247 Y 247 (652)
T ss_pred H
Confidence 4
No 127
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.50 E-value=1.2e-13 Score=80.82 Aligned_cols=67 Identities=30% Similarity=0.618 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC-CcHHHHHHHHHHHhcCC
Q 024618 173 DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG-MYEESVRYYVRALAMNP 239 (265)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 239 (265)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.50 E-value=2.1e-12 Score=89.63 Aligned_cols=134 Identities=20% Similarity=0.311 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHH
Q 024618 122 YADVARLFVEAARMSPED--ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILA 196 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~ 196 (265)
+..+...+.+.++..+.+ ...+..+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444455555554444444 5678999999999999999999999999887663 45899999999999999999999
Q ss_pred HHHHHhcCCcchhhHHHHHHHHH-------hcCCcH-------HHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618 197 YQRALDLKPNYVRAWANMGISYA-------NQGMYE-------ESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258 (265)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 258 (265)
+++++...|.....+..+|.++. ..|+++ +|+.++++++..+|.+. ...+..+...|++
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 99999999999998888888888 777776 55566666777777643 3344445555554
No 129
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.3e-12 Score=93.38 Aligned_cols=124 Identities=25% Similarity=0.325 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618 22 LLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGW 101 (265)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (265)
..+.-+.-++.-+..+|++.+.|..||.+|+..|+++.|...|.+++++.|++++.+..+|.+++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~----------- 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG----------- 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----------
Confidence 355666667777777788888888888888888888888888888888888888877777777664432
Q ss_pred HhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618 102 LRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173 (265)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 173 (265)
.....++...++++++.+|.+..+.+.+|..++..|++.+|+..++..++..|.+
T Consensus 206 -----------------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 206 -----------------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred -----------------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 1123456667777777777777777777777777777777777777777776654
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.49 E-value=1.5e-12 Score=90.68 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN 213 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 213 (265)
+.....++.+|..+...|++++|+.+|+++++..|+. +.++..+|.++...|++++|+..+++++...|.++..+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456778999999999999999999999999887654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC--------------cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 214 MGISYANQGM--------------YEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 214 l~~~~~~~g~--------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
+|.++...|+ +++|++++++++..+|++ +...+..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 9999999887 678888999999988886 3344444444443
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.49 E-value=1e-12 Score=82.28 Aligned_cols=99 Identities=32% Similarity=0.608 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCC
Q 024618 222 GMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 222 g~~~~A~~~~~~a~~~~~~ 240 (265)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988773
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=1.6e-11 Score=107.31 Aligned_cols=253 Identities=13% Similarity=0.002 Sum_probs=179.0
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENS-----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLS 80 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~ 80 (265)
..|..+...|++++|...+++++...|... .+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 356777889999999999999988554432 245678889999999999999999998763321 346677
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCC----C-------CchhhhhhhhchHHHHHHHHHHHhcCCC-----CHHHHH
Q 024618 81 LGVSHTNELEQAAALKYLYGWLRHHPKYG----T-------IAPPELSDSLYYADVARLFVEAARMSPE-----DADVHI 144 (265)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~ 144 (265)
+|.++...|++++|...+++++....... . ..+.++...|++++|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 89999999999999999999887533221 1 0156778889999999999998775321 245566
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH----HHHHHHHhhcCcHHHHHHHHHHHhcCCcchh----hHHH
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWN----KLGATQANSVQSADAILAYQRALDLKPNYVR----AWAN 213 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 213 (265)
.++.++...|++++|...+.++....+.. ..... .....+...|+.+.|...+.......+.... .+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 78889999999999999999987653321 11111 1123344567777777777665543222211 2456
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHhCCccccccc
Q 024618 214 MGISYANQGMYEESVRYYVRALAMNPK------ADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
++.++...|++++|...+++++..... ...++..+|.++...|+.++|.+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888888888888888765221 234566788888888888777653
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.49 E-value=7.5e-12 Score=84.50 Aligned_cols=134 Identities=20% Similarity=0.122 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED---ADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
.+.++|-..|..++.. ...++...+...++......|+. ..+.+.+|.++...|++++|...|+.
T Consensus 6 ~~~~~a~~~y~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQA------------LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445555666655543 23455677777788888888877 46778889999999999999999999
Q ss_pred HHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 166 ALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 166 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
++...|+. +.+...++.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99887654 45788899999999999999999976 33344456778889999999999999999999874
No 134
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.1e-11 Score=91.51 Aligned_cols=252 Identities=12% Similarity=-0.003 Sum_probs=171.8
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
++.+.+|.+.+..-.|++||.+|++++..+|+....-..++.||+++.-++-+.+++.--++..|+++.+....+...++
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFR 231 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence 45677888999999999999999999999998888888899999999999999999999999999998877777665554
Q ss_pred hhhHHHHHH-----------------------------------HHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHH
Q 024618 88 ELEQAAALK-----------------------------------YLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132 (265)
Q Consensus 88 ~~~~~~A~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 132 (265)
.-+-..|.. .+-..++.-|+-..-+...+..+++..+|..+.+.
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd- 310 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD- 310 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh-
Confidence 322222222 11122222222222225556777888888777654
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh---hCC------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK---LKP------QDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.+|..|.-+...|.+....|+-....+.++.+-+ +-. +.......++.+++-..++++.+.+++..-..
T Consensus 311 --l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 311 --LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred --cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777788887777766555544443322 211 12233455666666677777777777766555
Q ss_pred CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHhCCccccc
Q 024618 204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP-KADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
..++....+++++++...|++.+|.+.|-+.-..+- +.......|+.||.+.+..+-|-
T Consensus 389 F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 389 FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 566666777788888888888888888776654432 22334456788888777766553
No 135
>PRK15331 chaperone protein SicA; Provisional
Probab=99.48 E-value=2.7e-12 Score=85.21 Aligned_cols=114 Identities=12% Similarity=-0.032 Sum_probs=102.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
.+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..+|.++..+++|++|+..|..+..+++++|..
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 34445556667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
.+..|.|+..+|+.+.|+.+|..++. .|.+....
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 99999999999999999999999998 46655443
No 136
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=7.4e-11 Score=90.32 Aligned_cols=251 Identities=14% Similarity=0.059 Sum_probs=190.6
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.|+.-|+--..++++..|.+++++++..+..+...|...+.+-++......|..++++++.+-|.-...|+....+-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 46667777788899999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
|+...|.+.|++.+...|+..... ...-...+.++.|...|++.+-.+|+ ...|...+..-.+.|+..-|...|+++
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999865444 55556677888899999999888886 777888888888899999999999998
Q ss_pred HhhCCCCH---HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhcCCc---HHHH-----HHHHH
Q 024618 167 LKLKPQDY---SLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQGMY---EESV-----RYYVR 233 (265)
Q Consensus 167 ~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~---~~A~-----~~~~~ 233 (265)
++.-.++. ..+...+..-..++.++.|.-.|+-++..-|.+ ...+......-.+-|+. ++++ -.|++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 88655542 334445555556677777777777777766665 23333333333334442 2222 13455
Q ss_pred HHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618 234 ALAMNPKADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 234 a~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (265)
.++.+|-+-++|+..-.+....|+.+.
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~ 340 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDR 340 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHH
Confidence 566666666666666666655555443
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.47 E-value=1.4e-12 Score=85.32 Aligned_cols=102 Identities=20% Similarity=0.214 Sum_probs=91.8
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSL 81 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 81 (265)
..++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356889999999999999999999999998876 5688999999999999999999999999998875 6789999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYG 109 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 109 (265)
|.++...|++++|+..+++++...|++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 9999999999999999999998888754
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.47 E-value=5.6e-13 Score=77.94 Aligned_cols=67 Identities=27% Similarity=0.365 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCC
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHP 106 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~ 106 (265)
++..|..+|.+++..|++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677778888888888888888888888888888888888888888887 67888888877777766
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=6e-11 Score=84.20 Aligned_cols=229 Identities=14% Similarity=0.033 Sum_probs=137.5
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHH--------------HHHHHHHHhcC---
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQA--------------IAAMMRAHEAE--- 71 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A--------------~~~~~~~~~~~--- 71 (265)
.-+--.+-++-.|+|..++..-.+.-.. +........+.+.|..+|++... +..+...++..
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchh
Confidence 4455577888899999999887776433 36677777788888888876533 22222222211
Q ss_pred ----------------CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc
Q 024618 72 ----------------PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM 135 (265)
Q Consensus 72 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 135 (265)
..+......-|.++...|++++|++.......+. .......++.+..+.+-|...++++.++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE--AAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1111233344556666677777766655421110 0011155666666777777777776665
Q ss_pred CCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618 136 SPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 211 (265)
+.+ .++..+|..+.. .+++.+|.-+|++.-+..|..+.....++.++..+|++++|...++.++..++++++++
T Consensus 167 ded--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 433 334444444332 23566777777777766666677777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCcHHHHH-HHHHHHhcCCCCc
Q 024618 212 ANMGISYANQGMYEESVR-YYVRALAMNPKAD 242 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~ 242 (265)
.++..+-...|...++.+ ...+.....|+++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 777777777776655544 3344444555544
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=2.5e-11 Score=83.59 Aligned_cols=192 Identities=16% Similarity=0.074 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSD 118 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ 118 (265)
..++..|..|-..|-+.-|.--|.+++.+.|+.++++..+|..+...|+++.|.+.|+..++++|...... |..+.-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34555666666666666666666666666666666666666666666666666666666666666655444 555555
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
-|++.-|.+-+.+..+.+|++|.--..+-. -...-++.+|...+.+-.+...+....|...+. ..|+..+ ...++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS~-e~l~~ 220 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKISE-ETLME 220 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhccH-HHHHH
Confidence 666666666666666666666532111111 112234555554443333222222222222221 1222211 11222
Q ss_pred HHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 199 RALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 199 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
++.....++ .++++.+|..+...|+..+|...|+-++..+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 222222221 3566777777777777777777777776643
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.44 E-value=2.3e-12 Score=80.69 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=91.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
++.+|..+...|++++|+..++++++..|.++.++..+|.++...+++++|+..+++++...|.++.++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCC
Q 024618 90 EQAAALKYLYGWLRHHPK 107 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~ 107 (265)
+++.|...+.+++...|+
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999998887763
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.44 E-value=4.8e-13 Score=81.40 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=73.1
Q ss_pred HcCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHH
Q 024618 19 RKGLLSEAVLALEAEVLKNPE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALK 96 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 96 (265)
..|++++|+..++++++..|. +...++.+|.+++..|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88889899999999999999999999999
Q ss_pred HHHHH
Q 024618 97 YLYGW 101 (265)
Q Consensus 97 ~~~~~ 101 (265)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 98764
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.43 E-value=6.6e-13 Score=76.59 Aligned_cols=65 Identities=31% Similarity=0.493 Sum_probs=49.6
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL 75 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 75 (265)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677778888888888888888888888888888888888888888888888888888777764
No 144
>PRK11906 transcriptional regulator; Provisional
Probab=99.43 E-value=1.1e-11 Score=95.29 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618 122 YADVARLFVEAA---RMSPEDADVHIVLGVLYNLS---------RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 122 ~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (265)
.+.|+.+|.+++ .++|+...++..++.++... .+..+|....+++++++|.++.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 456677777777 77777777777777776543 234567777778888888888888888888887788
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
++.|...|++++.++|+.+.+|+..|.+....|+.++|++.++++++++|...
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 88888888888888888888888888888888888888888888888887654
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.43 E-value=9.6e-12 Score=86.59 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=72.9
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.++..+..+|.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566777777777777777777777665543 3466777777777777777777777777777777777777777777
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED 139 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 139 (265)
..|+...+...++.++. .+.+|++.+++++..+|++
T Consensus 118 ~~g~~~~a~~~~~~A~~-----------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEA-----------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HcCChHhHhhCHHHHHH-----------------HHHHHHHHHHHHHhhCchh
Confidence 66665555544443332 1455555555655555554
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.43 E-value=3.4e-11 Score=96.95 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=109.4
Q ss_pred hCCCChHHH--HHHHHHHhhcCc---HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 024618 36 KNPENSEGW--RLLGIAHAENDD---DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT 110 (265)
Q Consensus 36 ~~~~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 110 (265)
..|.++.+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++.....+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~----------------- 394 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP----------------- 394 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC-----------------
Confidence 346666655 446666665544 7899999999999999999999988887754322210
Q ss_pred CchhhhhhhhchHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618 111 IAPPELSDSLYYADVARLFVEAARM--SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV 188 (265)
Q Consensus 111 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (265)
....+...+.....+++.. +|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|
T Consensus 395 ------~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G 467 (517)
T PRK10153 395 ------LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG 467 (517)
T ss_pred ------ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 0011234444555555553 666677888888888888888888888888888888 4778888888888888
Q ss_pred CcHHHHHHHHHHHhcCCcchh
Q 024618 189 QSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 189 ~~~~A~~~~~~~~~~~~~~~~ 209 (265)
++++|+..|++++.++|.++.
T Consensus 468 ~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 DNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHhcCCCCch
Confidence 888888888888888888764
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.43 E-value=5.8e-13 Score=81.03 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=54.4
Q ss_pred ccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH
Q 024618 153 SRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY 230 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (265)
.|++++|+..++++++..|. +...++.+|.++...|++++|+..+++ ...+|.++...+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 345566667777777777777777777 666666666666667777777777777777
Q ss_pred HHHH
Q 024618 231 YVRA 234 (265)
Q Consensus 231 ~~~a 234 (265)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.43 E-value=2.9e-11 Score=90.91 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=116.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS 119 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (265)
..|.+|...|++++|.++|.++....-. -...+...+.++... ++++|+.++++++.+ +...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~-----------y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI-----------YREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH-----------HHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH-----------HHhc
Confidence 3477888888888888888888654211 123444555555443 777777777666543 3334
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhhcCcHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-RQYDKAIESFQTALKLKPQ--D----YSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~ 192 (265)
|++..| ...+..+|.+|... |++++|+++|++++..... . ...+..+|.++...|+|++
T Consensus 108 G~~~~a--------------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 108 GRFSQA--------------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp T-HHHH--------------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred CcHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 444443 34566778888888 9999999999999886322 2 3567788999999999999
Q ss_pred HHHHHHHHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 193 AILAYQRALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 193 A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
|+..|+++....-++ ...++..+.|+...|++..|...+++....+|...
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999988653221 13456778899999999999999999999988654
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=99.42 E-value=6.5e-11 Score=91.19 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=140.2
Q ss_pred CCCCh---HHH----HHHHHHHhhcC---cHHHHHHHHHHHH---hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 37 NPENS---EGW----RLLGIAHAEND---DDQQAIAAMMRAH---EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 37 ~~~~~---~~~----~~l~~~~~~~~---~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
.|.+. ++| +..|...+..+ ....|..+|.+++ .++|+...++..++.|+...--.
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~------------ 311 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH------------ 311 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh------------
Confidence 35555 444 56677665555 4567899999999 99999999999999988754110
Q ss_pred cCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618 104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT 183 (265)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 183 (265)
+..- ......+|.+..+++++++|.|+.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+
T Consensus 312 ---------g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 312 ---------GKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred ---------cCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 0000 122347788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH-HHhcCCcHHHHHHHHHHHh
Q 024618 184 QANSVQSADAILAYQRALDLKPNYVRAWANMGIS-YANQGMYEESVRYYVRALA 236 (265)
Q Consensus 184 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~ 236 (265)
....|+.++|.+.++++++++|.-..+-...-.+ .+-....++|+..|-+-.+
T Consensus 382 ~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 382 HFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 9999999999999999999999875443333233 3345567888888866443
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=2.1e-10 Score=100.38 Aligned_cols=254 Identities=15% Similarity=0.026 Sum_probs=185.8
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCC-----C----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPE-----N----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LE 76 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~ 76 (265)
...+..+...|++++|...+..+....+. . ......++.++...|++++|...+++++...+.. ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 45677888999999999999988664322 1 2344557888899999999999999999854432 23
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCC--------C
Q 024618 77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPE--------D 139 (265)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~--------~ 139 (265)
+...+|.++...|++++|...+++++.......... +.++...|++++|...+++++..... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 567788889999999999999999987655432211 66788899999999999998875211 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hhH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-----DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RAW 211 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~ 211 (265)
...+..+|.++...|++++|...+.+++..... ....+..+|.++...|++++|...+.++....+... ...
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 234567788999999999999999999875321 245566788899999999999999999876533211 111
Q ss_pred H----HHHHHHHhcCCcHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhCCccccccc
Q 024618 212 A----NMGISYANQGMYEESVRYYVRALAMNPKADN----AWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 212 ~----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~ 264 (265)
. .....+...|+.+.|..++.......+.... .+..++.++...|++++|...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 1224455688999999998776653322221 245788999999999888654
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.41 E-value=1.4e-12 Score=75.26 Aligned_cols=64 Identities=31% Similarity=0.542 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 179 KLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 179 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666777777777777766666666677777777777777777777777666666653
No 152
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.40 E-value=1.3e-09 Score=80.10 Aligned_cols=221 Identities=27% Similarity=0.338 Sum_probs=192.2
Q ss_pred cCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHh--cCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618 20 KGLLSEAVLALEAEVLKNPE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHE--AEPTNLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~ 95 (265)
.+.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+......+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46677788888888777775 367888889999999999999999999997 68888899999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCc---hh-hhhhhhchHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 96 KYLYGWLRHHPKYGTIA---PP-ELSDSLYYADVARLFVEAARMSP---EDADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
..+..++...+...... .. ++...++++.|...+.+++...| .........+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 99999999877763333 44 78899999999999999988776 3556667777778889999999999999999
Q ss_pred hCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 169 LKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 169 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
..+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 68999999999999999999999999999999987777888888888778899999999999999887
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.40 E-value=2.2e-11 Score=98.04 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=106.0
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhcC
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR--------QYDKAIESFQTALKL--KPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 189 (265)
+....|+.+|+++++.+|++..++-.++.++.... +...+.....+++.. +|.++.++..+|......|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 34778999999999999999999988888775532 344556666666553 77778899999999999999
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
+++|...+++++.++|+ ..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus 436 ~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 436 TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999995 789999999999999999999999999999999774
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.40 E-value=2.3e-10 Score=81.47 Aligned_cols=176 Identities=19% Similarity=0.147 Sum_probs=104.9
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH---HHhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE---VLLS 80 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~ 80 (265)
...++..|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+..+++.+.+.|.++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4457889999999999999999999998888765 458888999999999999999999999999888754 5566
Q ss_pred hhhhhhh--------hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618 81 LGVSHTN--------ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL 152 (265)
Q Consensus 81 la~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (265)
.|.++.. ..-...|+..|+..+...|++.... .|..-+..+ ...-..--..+|..|.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~-----------dA~~~i~~~---~d~LA~~Em~IaryY~k 179 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP-----------DAKARIVKL---NDALAGHEMAIARYYLK 179 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh-----------hHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6655432 1223344444555555555433211 000000000 00001112334555555
Q ss_pred ccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHH
Q 024618 153 SRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILA 196 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~ 196 (265)
.|.+..|+..++++++..|+. .+++..+..+|..+|-.++|...
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 555555555555555554433 23444455555555555555443
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.39 E-value=3.7e-11 Score=81.12 Aligned_cols=126 Identities=23% Similarity=0.154 Sum_probs=103.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGV 83 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~ 83 (265)
.+..+......++...+...+++++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+...++.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3555666667899999999999999999988 4577889999999999999999999999987665 457888999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 84 SHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
++...|++++|+..++... ..+..+.++..+|.++...|++++|+..|
T Consensus 94 ~~~~~~~~d~Al~~L~~~~--------------------------------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIP--------------------------------DEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHcCCHHHHHHHHHhcc--------------------------------CcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998888775421 12334667888999999999999999999
Q ss_pred HHHH
Q 024618 164 QTAL 167 (265)
Q Consensus 164 ~~~~ 167 (265)
++++
T Consensus 142 ~~Al 145 (145)
T PF09976_consen 142 QKAL 145 (145)
T ss_pred HHhC
Confidence 8874
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.39 E-value=3.2e-11 Score=83.71 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhCCCC--hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHH
Q 024618 23 LSEAVLALEAEVLKNPEN--SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKY 97 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~ 97 (265)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444433333332 3344555555555555555555555555554432 23555555555555555555555
Q ss_pred HHHHHhcCCCC
Q 024618 98 LYGWLRHHPKY 108 (265)
Q Consensus 98 ~~~~~~~~~~~ 108 (265)
+++++...|..
T Consensus 95 ~~~Al~~~~~~ 105 (168)
T CHL00033 95 YFQALERNPFL 105 (168)
T ss_pred HHHHHHhCcCc
Confidence 55555555543
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.38 E-value=4.5e-11 Score=87.90 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhH
Q 024618 139 DADVHIVLGVLY-NLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAW 211 (265)
Q Consensus 139 ~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 211 (265)
+....+..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|++++...|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346667777765 66799999999999999999998 5899999999999999999999999999888774 6889
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618 212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
+.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 9999999999999999999999999999976543
No 158
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.38 E-value=4.2e-13 Score=98.40 Aligned_cols=230 Identities=12% Similarity=0.020 Sum_probs=171.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
-.+|..|+++|+|++||.+|.+.+..+|.++..+.+.+.+|++...+..|...+..++.++.....+|...+.+...+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH---------HHHHHHHHccCHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHI---------VLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~A~~ 161 (265)
..+|.+.++.++.+.|+..... ..+.......++ +-+.+..|....+.. .-|..+...|.++.++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk-K~~a~i~Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK-KSLARINSLRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH-HHHHHhcchHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhcccccee
Confidence 9999999999999999854332 001111111111 111122222222222 22455666777777777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
++.+-+.....+...-.+ +..+.+..+++.++.-..+++..+|.........|.+-.-.|...++...++.++.+.|.+
T Consensus 256 ~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 256 DVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred EeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence 776666554444433333 6677888889999998888888888776666666777777788888888999999888876
Q ss_pred chhHH
Q 024618 242 DNAWQ 246 (265)
Q Consensus 242 ~~~~~ 246 (265)
..+-.
T Consensus 335 ~~~~~ 339 (536)
T KOG4648|consen 335 ETPKE 339 (536)
T ss_pred ccchh
Confidence 54433
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.8e-11 Score=92.07 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
.....|..+++.|+|..|...|++++..-+.. ..++.+++.++.++++|.+|+..+++++..+|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34555777788888888888888877642211 245778888888888888888888888888888
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
|..+++..|.++..+|+++.|+..|++++++.|+|..+...+..+-.+..+
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888887777777666555443
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.35 E-value=3.9e-10 Score=96.27 Aligned_cols=215 Identities=13% Similarity=0.070 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc-CCChH----HHHhhhhhhhhhhhhHHHHHHHH
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA-EPTNL----EVLLSLGVSHTNELEQAAALKYL 98 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~~~la~~~~~~~~~~~A~~~~ 98 (265)
.+...-|++.+..+|+....|...-..+.+.++.++|.+.+++++.. ++... .+|..+-.....-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34556688888999999999999999999999999999999999975 34322 34444444444445566677788
Q ss_pred HHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CH
Q 024618 99 YGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--DY 174 (265)
Q Consensus 99 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 174 (265)
+++.+......... ..+|...+.+++|.++++.+++.......+|..++..+++.++-+.|...+.+|++.-|. +.
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 88877654333322 778899999999999999999998888999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
......+.+-++.|+.+.+...|+..+...|.-.+.|..+...-.+.|+.+.+...|++++.+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888899999999999999999999999999999999999999999999999999999999864
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.34 E-value=2.3e-11 Score=89.44 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=89.0
Q ss_pred cchhhhHHH-HHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhh
Q 024618 9 NPLKEGQEL-FRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSL 81 (265)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 81 (265)
..+..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|.++++..|++ +++++.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 356677776 56799999999999999999987 5799999999999999999999999999888774 7889999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYG 109 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 109 (265)
|.++...|++++|...|+++++..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999999888753
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.32 E-value=1.2e-10 Score=89.91 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=106.8
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
...+...++++.|+..+++..+.+|. +...++.++...++..+|+..+.++++..|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34556677899999999999888765 556688999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
|+...++++...|++...|+.|+.+|...|+++.|+..+..+-
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999998877543
No 163
>PRK15331 chaperone protein SicA; Provisional
Probab=99.31 E-value=2.5e-11 Score=80.69 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=73.2
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
.+..|..++..|++++|..+|+-+...+|.+++.|..||.++..+++|++|+..|..+..+++++|...+..|.|+...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 35567777778888888888887777777777777778888888888888888888877777777777777888888888
Q ss_pred hHHHHHHHHHHHHh
Q 024618 90 EQAAALKYLYGWLR 103 (265)
Q Consensus 90 ~~~~A~~~~~~~~~ 103 (265)
+.+.|..+|+.++.
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 87777777777766
No 164
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.29 E-value=5.6e-09 Score=74.51 Aligned_cols=175 Identities=16% Similarity=0.158 Sum_probs=135.4
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
.+..|+.-|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++.+...|.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------ 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------ 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------
Confidence 46688999999999999999999999999988875 468889999999999999999999999999998644
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCH--------------
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS--------RQYDKAIESFQTALKLKPQDY-------------- 174 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~-------------- 174 (265)
-..+++..|.+++.. .-..+|+..+++.++..|++.
T Consensus 107 ----------------------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d 164 (254)
T COG4105 107 ----------------------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND 164 (254)
T ss_pred ----------------------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 334444444443321 223456677777777777763
Q ss_pred ---HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 175 ---SLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 175 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
..-..+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 223457888999999999999999999987765 46788899999999999998877655545555543
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.29 E-value=8.5e-11 Score=76.51 Aligned_cols=88 Identities=28% Similarity=0.226 Sum_probs=77.0
Q ss_pred CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---H
Q 024618 3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---E 76 (265)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~ 76 (265)
|..+...++..|...++.|+|++|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++ -
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 55566778999999999999999999999999988764 56889999999999999999999999999999885 4
Q ss_pred HHhhhhhhhhhhhh
Q 024618 77 VLLSLGVSHTNELE 90 (265)
Q Consensus 77 ~~~~la~~~~~~~~ 90 (265)
+++..|.+++....
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 77888888776654
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.29 E-value=9.4e-11 Score=90.57 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=107.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (265)
-.+..++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455566778999999999999988765 667789999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 224 YEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 224 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
++.|+...+++++..|++...|..|+.+|..+|++++|+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999964
No 167
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.29 E-value=7.2e-10 Score=82.31 Aligned_cols=230 Identities=17% Similarity=0.162 Sum_probs=178.3
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC----C--hHHHH
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSE---GWRLLGIAHAENDDDQQAIAAMMRAHEAEP----T--NLEVL 78 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~--~~~~~ 78 (265)
+.....|..++...++++|+..+.+.+..-.+... .+-.+..+...+|.+++++.+.-..++... . .-+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999876544333 333356677888888887776555544322 1 24688
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC--------chhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHH
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI--------APPELSDSLYYADVARLFVEAARMSPED------ADVHI 144 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 144 (265)
.+++..+....++.+++.+-...+......+.- .+..+...+.++++++.|+++++....+ ..+..
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 889999999999999999988887765444411 1778888899999999999999875433 25788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC------Ccch
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKLKPQ----D------YSLWNKLGATQANSVQSADAILAYQRALDLK------PNYV 208 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~ 208 (265)
.+|.++....|+++|..+..++.++..+ + .-+++.++..+..+|..-.|.++.+++.++. +...
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999999876332 1 3457788999999999999999999988763 2334
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.....+|++|...|+.+.|..-|+++...
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 56677999999999999999999988764
No 168
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.6e-10 Score=87.04 Aligned_cols=100 Identities=25% Similarity=0.282 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
..++.+++.++.++++|.+|+..++++|..+|+|..+++..|.++...|+++.|+..|++++++.|+|-.+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hcCCcHHH-HHHHHHHHhcCC
Q 024618 220 NQGMYEES-VRYYVRALAMNP 239 (265)
Q Consensus 220 ~~g~~~~A-~~~~~~a~~~~~ 239 (265)
+..++.+. .+.|..++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 77766554 788888887644
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.28 E-value=2e-11 Score=71.08 Aligned_cols=67 Identities=27% Similarity=0.337 Sum_probs=61.4
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618 17 LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV 83 (265)
Q Consensus 17 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 83 (265)
++..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999888877664
No 170
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=1e-09 Score=75.86 Aligned_cols=207 Identities=14% Similarity=0.049 Sum_probs=152.5
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
.+.+|..|-..|-+.-|..-|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-++.+.|..++.-|
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 46778888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCchhhhhh--hhchHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIAPPELSD--SLYYADVARLF-VEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
++.-|.+.+.+..+.+|++|.-..+.+.. .-++.+|..-+ +++...+.+ ...|.... .| .|+.. -...++++
T Consensus 148 R~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~-~y--LgkiS-~e~l~~~~ 222 (297)
T COG4785 148 RYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE-FY--LGKIS-EETLMERL 222 (297)
T ss_pred chHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH-HH--Hhhcc-HHHHHHHH
Confidence 99999999999999999998765444443 33455665544 344333322 22222222 22 23222 12233344
Q ss_pred HhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhc
Q 024618 167 LKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQ 221 (265)
Q Consensus 167 ~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 221 (265)
.....++ .++++.+|..+...|+.++|...|+-++..+--+ ..+.+.++.+....
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~ 288 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQ 288 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccc
Confidence 3333333 4678999999999999999999999998765433 22344455544433
No 171
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.27 E-value=1.4e-09 Score=80.86 Aligned_cols=248 Identities=15% Similarity=0.066 Sum_probs=182.1
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HHHHhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPE------NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LEVLLSL 81 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l 81 (265)
.....-..|.|++++..--..++...+ .-+++.+++..+....++.+++.+-+..+.+.... ..+...+
T Consensus 49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 49 LVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 345566778888777655444332211 13477889999999999999999988888764333 3567779
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCC----CC------HHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSP----ED------ADV 142 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~----~~------~~~ 142 (265)
+.++..++.++++++.|+++++...+..+.. +..+....++++|+-+..++..+.. ++ ..+
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 9999999999999999999998766554433 7888889999999998888877632 22 246
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------chhh
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLK------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------YVRA 210 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~ 210 (265)
++.++..+..+|+...|.++++++.++. +-.......+|.+|...|+.+.|...|+.+...... ...+
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a 288 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA 288 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 7888999999999999999999998763 223566788999999999999999999999865322 2345
Q ss_pred HHHHHHHHHhcCCcH-----HHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCccc
Q 024618 211 WANMGISYANQGMYE-----ESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~-----~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~ 260 (265)
+...+.+.....-.. .|++.-++++++...- ...+..++.+|..+|.-++
T Consensus 289 l~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 289 LDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 566666665544333 4888888888765432 2456678888877766543
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.27 E-value=8.2e-09 Score=75.87 Aligned_cols=197 Identities=23% Similarity=0.276 Sum_probs=171.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh-hhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVL--KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV-SHT 86 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~ 86 (265)
....+..+...+++..+...+...+. ..+.....+...+......+++..++..+..++...+.........+. ++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 45678888899999999999999987 678888899999999999999999999999999988877666666666 899
Q ss_pred hhhhHHHHHHHHHHHHhcCCC-CCCCc-----hhhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPK-YGTIA-----PPELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 159 (265)
..|+++.|...+.+++...|. ..... +..+...++++.++..+.+++...+. ....+..++..+...+++..|
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 999999999999999886663 11111 44456788999999999999999999 699999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 160 IESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999987778888888888777899999999999999887
No 173
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.22 E-value=1.5e-09 Score=92.85 Aligned_cols=208 Identities=18% Similarity=0.117 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc-CCCCC----CCc---hhhhhhhhchHHHHHH
Q 024618 57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH-HPKYG----TIA---PPELSDSLYYADVARL 128 (265)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~----~~~---~~~~~~~~~~~~a~~~ 128 (265)
-.+..+-|++.+..+|+....|..........++.++|.+..++++.. ++... ..| .++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 345667889999999999999999999999999999999999999974 33322 222 3333444556667788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc--
Q 024618 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN-- 206 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 206 (265)
|+++.+... -..++..|..+|...+++++|.++++..++...+...+|...|..++.+++-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 888887643 25788899999999999999999999999998888999999999999999999999999999999998
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+.......+++.++.|+.+.+...|+-.+.-.|.-.+.|.-+...-.+.|+.+.+..+|
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 67888889999999999999999999999999999999999998888888776655443
No 174
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=1.1e-09 Score=78.69 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=96.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMGI 216 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 216 (265)
.+..|.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888888999999999999999999999987 6899999999999999999999999999988766 578999999
Q ss_pred HHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 217 SYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
+...+|+.++|...|+++++..|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999998766443
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.20 E-value=8.2e-11 Score=68.50 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=23.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV 208 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 208 (265)
.|++++|+..|++++..+|+++.++..+|.++...|++++|...+++++..+|+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 33444444444444444444444444444444444444444444444444444433
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.20 E-value=4.2e-10 Score=84.65 Aligned_cols=202 Identities=15% Similarity=0.088 Sum_probs=130.4
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC--C----hHHHHh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNP--EN----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP--T----NLEVLL 79 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~ 79 (265)
..|..+...|++++|...|.++....- .+ ...+...+.++... ++++|+.++++++.+.- . -..++.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 447777788889999988888865431 11 23455566666555 88888888888887521 1 135667
Q ss_pred hhhhhhhhh-hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 024618 80 SLGVSHTNE-LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158 (265)
Q Consensus 80 ~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (265)
.+|.+|... |++++|+.+|++++...... +... .....+..+|.++...|+|++
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-----------~~~~--------------~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQE-----------GSPH--------------SAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHT-----------T-HH--------------HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-----------CChh--------------hHHHHHHHHHHHHHHhCCHHH
Confidence 777777777 77777777776665432110 0000 113567788999999999999
Q ss_pred HHHHHHHHHhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-----hhHHHHHHHHHh--cCCc
Q 024618 159 AIESFQTALKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYV-----RAWANMGISYAN--QGMY 224 (265)
Q Consensus 159 A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~--~g~~ 224 (265)
|+..|+++....-++ ...++..+.+++..|++..|...+++....+|... .....+-.++.. ...+
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 999999988753221 13456778899999999999999999998887543 334444444443 3457
Q ss_pred HHHHHHHHHHHhcCC
Q 024618 225 EESVRYYVRALAMNP 239 (265)
Q Consensus 225 ~~A~~~~~~a~~~~~ 239 (265)
++|+.-|.+..+++|
T Consensus 254 ~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 254 TEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHCHHHTTSS---H
T ss_pred HHHHHHHcccCccHH
Confidence 888888887766654
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.20 E-value=3.8e-10 Score=81.11 Aligned_cols=100 Identities=23% Similarity=0.265 Sum_probs=92.5
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGV 83 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~ 83 (265)
.++.|..++..|+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+++..|++ |++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6889999999999999999999999999876 5799999999999999999999999999987765 689999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618 84 SHTNELEQAAALKYLYGWLRHHPKYG 109 (265)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~~~~~~~~~ 109 (265)
+...+|+.++|...|+++++..|+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999988754
No 178
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=2.1e-08 Score=79.89 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=123.4
Q ss_pred cCcHHHHHHHHHHHHhc-CCC-----hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhh
Q 024618 54 NDDDQQAIAAMMRAHEA-EPT-----NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSL 120 (265)
Q Consensus 54 ~~~~~~A~~~~~~~~~~-~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 120 (265)
.|+..+-+..|..+++. +|. ....|..+|..|...|+.+.|...|+++.+..-....-+ +..-....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 34455555556555542 332 235677777777778888888888887777654433222 55555666
Q ss_pred chHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024618 121 YYADVARLFVEAARMSPE------------------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA 182 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 182 (265)
+++.|+++++++...-.. ...+|..++......|-++.....|++++.+.--.|....+.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777776643111 13467777777777888888888888888877777888888888
Q ss_pred HHHhhcCcHHHHHHHHHHHhcCC--cchhhHHHH---HHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 183 TQANSVQSADAILAYQRALDLKP--NYVRAWANM---GISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 183 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l---~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.+....-++++.+.|++.+.+.+ .-.+.|... ...-+.--..+.|...|+++++..|.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 88888888888888888887753 333444332 22222233578888888888887773
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.19 E-value=1.4e-10 Score=68.50 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=38.5
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
.++...+++++|++.+++++..+|+++..+..+|.++..+|++++|+..++++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666665554433
No 180
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=7.1e-10 Score=75.57 Aligned_cols=105 Identities=23% Similarity=0.303 Sum_probs=74.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-----SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
+..-|.-++..|+|++|...|..++...|..+ ..+.+.|.+..+++.++.|+..+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33446666777777777777777777776653 3456667777777777777777777777777777777777777
Q ss_pred HHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 218 YANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 218 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
|.++.++++|++-|++.++.+|....+...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 777777777777777777777766544433
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.2e-08 Score=72.84 Aligned_cols=163 Identities=15% Similarity=-0.012 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----chhhhh
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI-----APPELS 117 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~ 117 (265)
....-|.++.+.|++++|.....+. .+.++...-..++.++.+.+-|...+++..+.+.+.... |..+..
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhc
Confidence 4445677899999999999887763 455666666678889999999999999999888765433 234444
Q ss_pred hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH-H
Q 024618 118 DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL-A 196 (265)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~ 196 (265)
..+...+|.-+|++.-...|..+......+.+++.+|+|++|...++.++..++++|+++.++..+-...|...++.. .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 556789999999999997777899999999999999999999999999999999999999999999999998877665 4
Q ss_pred HHHHHhcCCcchhh
Q 024618 197 YQRALDLKPNYVRA 210 (265)
Q Consensus 197 ~~~~~~~~~~~~~~ 210 (265)
+.+....+|+++.+
T Consensus 265 l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhcCCcchHH
Confidence 55566667776543
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.17 E-value=3.2e-10 Score=66.97 Aligned_cols=70 Identities=19% Similarity=0.204 Sum_probs=61.8
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV 83 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 83 (265)
...++..+++++|+..+++++..+|+++..+..+|.++...|++.+|+..++++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999988877665543
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=1.9e-09 Score=69.22 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc---chhhHHHH
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPN---YVRAWANM 214 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 214 (265)
.+++.+|.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467888889999999999999999998865443 567888999999999999999999999888787 66777778
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh
Q 024618 215 GISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999998887765
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=1.5e-09 Score=69.67 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=75.4
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618 76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155 (265)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (265)
.+++.+|.++-..|+.++|+..|++++..... .+....++..+|..+...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------------------~~~~~~a~i~lastlr~LG~ 53 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS----------------------------GADRRRALIQLASTLRNLGR 53 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------------chHHHHHHHHHHHHHHHcCC
Confidence 45566667777777766666666666554332 12235678889999999999
Q ss_pred HHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 156 YDKAIESFQTALKLKPQ---DYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
+++|+..+++.+...|+ +..+...++.++...|+.++|+..+-.++.
T Consensus 54 ~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 54 YDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999988888 677888888999999999999998887764
No 185
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.12 E-value=8.6e-11 Score=86.54 Aligned_cols=195 Identities=9% Similarity=-0.045 Sum_probs=131.1
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhh
Q 024618 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSL 120 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~ 120 (265)
.-..|+.|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|++...+..|...+..++.++......+ +..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 345788999999999999999999999999999999999999999999999988888888766554444 55556677
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH---------HHHHHHHHhhcCcH
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLW---------NKLGATQANSVQSA 191 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~ 191 (265)
...+|.+-++.++++.|.+.+....++.+-. ..++. -+.+..|....+. -.-|..+.+.|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 7777777777777777776555444443321 11110 1111122211111 12345566667777
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
.++.++.+-+.....+...-.+ +..+.+.-+++.++.-..+++..+|........
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~ 306 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSG 306 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCC
Confidence 7777776655544444333333 667777888899998888888877765443333
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.11 E-value=1.3e-08 Score=68.74 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=81.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAAR-MSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
..-+.+.......+.+...|....-+ +..+...|++.+|...|++++. +..+++..+..++...+..+++..|...+
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33344555555555555555544333 5556666666666666666554 33455555666666666666666666666
Q ss_pred HHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 164 QTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 164 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
++..+.+|. +|+....+|..+...|++.+|...|+.++...|. +.+....+..+.++|+..+|..-+..
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 666655543 3455555666666666666666666666665555 34445555555666655555544433
No 187
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.11 E-value=1.9e-07 Score=70.50 Aligned_cols=242 Identities=17% Similarity=0.087 Sum_probs=157.6
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
..++...-.|+++.|.+-|+.++. +|+.- -.+..+-......|+.+-|+.+.+++-...|.-+.++...-...+..|+
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 346667778888888888887754 33321 1222333334567888888888888888888888888777777888888
Q ss_pred HHHHHHHHHHHHhcC---CCCCCCc------hh-hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 024618 91 QAAALKYLYGWLRHH---PKYGTIA------PP-ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI 160 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~---~~~~~~~------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 160 (265)
++.|++..+...... ++...-. +. .-....+...|...-..+.++.|+....-..-+..+++.|+..++-
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence 888888887655432 1111111 11 1111234566777777888888888777777788888888888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH---HHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 161 ESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ---RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.+++.+.+..|. |.+ +.+|....--+.++.-++ +...+.|++.+.....+..-..-|++..|..--+.+...
T Consensus 284 ~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 284 KILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred hHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 888888887765 332 233333322233333333 334557778888888888888888888888888888877
Q ss_pred CCCCchhHHHHHHHHHHh-CCccc
Q 024618 238 NPKADNAWQYLRISLRYA-GRYPN 260 (265)
Q Consensus 238 ~~~~~~~~~~l~~~~~~~-~~~~~ 260 (265)
.|. ..++..++.+-... |+-.+
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHH
Confidence 776 34455555555433 54443
No 188
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.10 E-value=8.4e-09 Score=67.32 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hhHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RAWAN 213 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~ 213 (265)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|++.+++++|+..+++-++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5678888999999999999999999999887765 57888999999999999999999999999999875 57888
Q ss_pred HHHHHHhcCC---------------cHHHHHHHHHHHhcCCCCchh
Q 024618 214 MGISYANQGM---------------YEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 214 l~~~~~~~g~---------------~~~A~~~~~~a~~~~~~~~~~ 244 (265)
.|.+++.+.. ..+|...|++.++..|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 8998888876 889999999999999987543
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.07 E-value=4.6e-07 Score=75.01 Aligned_cols=226 Identities=11% Similarity=-0.062 Sum_probs=162.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618 15 QELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA 94 (265)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 94 (265)
.-....+++.+|+....++++..|+...+....|.++.++|..++|..+++..-...+++...+..+-.+|..+++.++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567899999999999999999999999999999999999999999888888888888888999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHH---------HHHH
Q 024618 95 LKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN-LSRQYD---------KAIE 161 (265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~---------~A~~ 161 (265)
..+|+++...+|. .... -..+.+.+.+.+-.+.--+.-+..|.++..++....+.. .....+ -|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999999 3333 334455555555444444555577887755444444333 333222 3445
Q ss_pred HHHHHHhhC-CCCHH-HHHHHHHHHHhhcCcHHHHHHHHHH-HhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 162 SFQTALKLK-PQDYS-LWNKLGATQANSVQSADAILAYQRA-LDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 162 ~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.+++.++.. +-... =....-.++..+|++++|...+..- .+.. +.+...-......+...+++.+-.+...+++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 556666554 21111 1222334566789999999998433 3333 333344445667777888999988888898888
Q ss_pred CCCC
Q 024618 238 NPKA 241 (265)
Q Consensus 238 ~~~~ 241 (265)
.+++
T Consensus 256 ~~Dd 259 (932)
T KOG2053|consen 256 GNDD 259 (932)
T ss_pred CCcc
Confidence 8886
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=5.4e-09 Score=71.39 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=86.8
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPED-----ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS 187 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (265)
|.-++..|++.+|...|..++...|.. ...+.+.|.++++++.++.|+..+.++++++|.+..++...+.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 445566666777777777777766654 346778899999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 188 VQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
.++++|+.-|+++++.+|....+.-.+..+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999877665555444
No 191
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.03 E-value=8.7e-08 Score=76.54 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=81.6
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------------
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPE----NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-------------- 73 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 73 (265)
..|..|...|+.+.|..+|+++++..-. -..+|...|..-+...+++.|.++.+++...-..
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 4455555555555555555555443311 1234444555555555555555555555432111
Q ss_pred ----hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCC--CCHHHHH
Q 024618 74 ----NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSP--EDADVHI 144 (265)
Q Consensus 74 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 144 (265)
+..+|..++......|-++.....|++++.+.--.|... +..+....-++++.+.|++.+.+.+ .-.++|.
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 112344444444444444444555555544433322222 4444444445555555555555432 2223333
Q ss_pred HHHH---HHHHccCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 145 VLGV---LYNLSRQYDKAIESFQTALKLKPQDY--SLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 145 ~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
..-. .-+.....+.|..+|+++++..|... .++...+..-..-|--..|+..|+++
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2221 11222345555555555555444211 12223333333334444444444444
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.01 E-value=7.5e-08 Score=65.19 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK-LKPQDYSLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
+....-..+.+...|. ..-.+.+|..+.+.|++.+|...|++++. +..+++..+..++...+..+++..|...+++..
T Consensus 73 ~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 3344444444455554 34456677777777777777777777765 455667777777777777777777777777777
Q ss_pred hcCCc--chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 202 DLKPN--YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 202 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
+.+|. .++....+|..+...|++.+|...|+.++...|+ +.+....+..+.++|+..+|.
T Consensus 152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 77664 3566677777777777777777777777777776 566666777777777666654
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.00 E-value=2.5e-09 Score=82.57 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=65.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL---WNKLGATQANSVQSADAILAYQRALDLK 204 (265)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 204 (265)
.+|+++..++++|.++...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999999999999854 9999999999999999999999999873
No 194
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=5.7e-07 Score=63.22 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=27.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDY-------SLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
.+..-...++|.+|+..|++.....-+++ ..++.-|.|++-..+.-.+...+++-.+.+|..
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 34444444555555555555444333322 223333444444444444444444444455543
No 195
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.94 E-value=1.8e-08 Score=67.88 Aligned_cols=86 Identities=26% Similarity=0.247 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC--
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ----------YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ-- 189 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 189 (265)
++.|.+.++.....+|.+.+.++.-|.++..+.+ +++|+.-|++++.++|+...++..+|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5667777777777777777777777776665533 3456666666667777777777777777665442
Q ss_pred ---------cHHHHHHHHHHHhcCCcc
Q 024618 190 ---------SADAILAYQRALDLKPNY 207 (265)
Q Consensus 190 ---------~~~A~~~~~~~~~~~~~~ 207 (265)
|++|..+|+++...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445555555555555554
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.94 E-value=6.9e-08 Score=65.16 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH---HHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHH
Q 024618 57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA---AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133 (265)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 133 (265)
++.|.+.++.....+|.+++.+++.|.++..+.++. ++..++ ++|+.-|++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mi------------------------edAisK~eeAL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMI------------------------EDAISKFEEAL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHH------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHH------------------------HHHHHHHHHHH
Confidence 678888999999999999999999999988887663 344443 67778899999
Q ss_pred hcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024618 134 RMSPEDADVHIVLGVLYNLSRQ-----------YDKAIESFQTALKLKPQDYSLWNKLGA 182 (265)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~l~~ 182 (265)
.++|+...+++.+|.++...+. |++|..+|+++...+|++......|..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999999999886653 788889999999999998765554443
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.93 E-value=1.4e-09 Score=65.08 Aligned_cols=64 Identities=28% Similarity=0.475 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCc---chhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDL----KPN---YVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
..++.++|.++..+|++++|+.+|++++++ .++ ...++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666677777777777777777766654 111 2345666777777777777777777777654
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.93 E-value=9e-09 Score=79.57 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=42.5
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADV---HIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
|..+...|++++|+..|+++++++|++..+ |+++|.+|..+|+.++|+..++++++.
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777777777777777777777777643 777777777777777777777777776
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.5e-07 Score=59.78 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=83.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISY 218 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~ 218 (265)
+-..|..+...|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+.-+++++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44557778888999999999999999999999999999999999999999999999999886543 35677889999
Q ss_pred HhcCCcHHHHHHHHHHHhcCCC
Q 024618 219 ANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 219 ~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
...|+.+.|..-|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999888776544
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=3.5e-06 Score=60.53 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
.+..+.+.++...+++.+|...+.+++..+|.++.+..+.+.|....|+...|++.++.+++..|.
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344455555555556666666666666666666666666666666666666666666666655554
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.85 E-value=3.7e-09 Score=63.28 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CC----CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL---KP----QDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
|+-..++..+|.++...|++++|+.+|++++++ .+ ....++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344678899999999999999999999999975 22 22567899999999999999999999999875
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.84 E-value=3.6e-07 Score=58.12 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=63.7
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhhhhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVSHTNE 88 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~ 88 (265)
.|..+...|+.+.|++.|.+++...|..+.++.+.+..+.-.|+.++|+.-+.+++++..+. -.++...|.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35566667777777777777777777777777777777777777777777777777764432 23566667777777
Q ss_pred hhHHHHHHHHHHHHhcCC
Q 024618 89 LEQAAALKYLYGWLRHHP 106 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~ 106 (265)
|+-+.|..-|+.+.++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777766665543
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.84 E-value=7.1e-06 Score=68.27 Aligned_cols=196 Identities=17% Similarity=0.111 Sum_probs=142.1
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
.-.|..+++.|+.++|..+++..-...+++...+-.+-.+|..++++++|..+|++++..+|+ .+..+.+-.+|.+.+.
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 456889999999999998888877777888888889999999999999999999999999999 8888888889999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhc---------hHHHHHHHHHHHhcC-CCCHH-HHHHHHHHHHHccC
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA----PPELSDSLY---------YADVARLFVEAARMS-PEDAD-VHIVLGVLYNLSRQ 155 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~a~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~ 155 (265)
|.+--+.--+..+..|+.+... ..++..... ..-|.+.+++.++.. +-... -....-.++...|+
T Consensus 126 yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 126 YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence 8876666666666777776554 111111111 233555666666655 22211 12223345667888
Q ss_pred HHHHHHHHHHH-Hh-hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 156 YDKAIESFQTA-LK-LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 156 ~~~A~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
+++|.+.+..- .+ ..+.+...-...+..+...+++.+-.+...+++..++++
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 99999998433 33 334444444556667778888888888888888888886
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=9.9e-07 Score=63.25 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=96.8
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA 92 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 92 (265)
.|......|+..+.+.-+......-. .+-.........+..++.+++-+ ..+.+.+..++...|+|.
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~ 194 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVS-------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYV 194 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHH-------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhh
Confidence 46667778888888776665532110 11111111112233444444332 234455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q 024618 93 AALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK-- 170 (265)
Q Consensus 93 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 170 (265)
-++..+.+.++.+|. .++.....+|.+.++.||.+.|..+++..-+.+
T Consensus 195 iS~d~~~~vi~~~~e------------------------------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k 244 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPE------------------------------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK 244 (366)
T ss_pred hhHHHHHHHHHhCCc------------------------------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 555555555554432 334455555555555555555555555332221
Q ss_pred ----CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 171 ----PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 171 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.+.|....|+..+|++.++.+++..|.
T Consensus 245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 1123344455555555666666666666666666666666666666666666666666666666666554
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.80 E-value=1e-05 Score=61.45 Aligned_cols=245 Identities=13% Similarity=-0.004 Sum_probs=176.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPEN--SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVSHTN 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~ 87 (265)
+..|.+....|+-..|.+.-.+.-+.-..+ +-++..-+..-...|+++.|.+-|+.++. +|.. .-.+..|-.--..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 455677777888888888887776444333 44555667888889999999999998876 3322 1122222233346
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc---CCCCH-----HHHHHHHHHHHHccCH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM---SPEDA-----DVHIVLGVLYNLSRQY 156 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~l~~~~~~~~~~ 156 (265)
.|..+.|..+-+.+....|..+... ....+..|+|+.|+++.+..... .++.. ..+...+... -.-+.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCCh
Confidence 8999999999999999999988776 56677889999999999876543 22221 1222222222 23468
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH---H
Q 024618 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV---R 233 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~ 233 (265)
..|...-.++.++.|+....-..-+..++..|+..++-..++.+.+..|. +.++ +..++.+.|+ .++.-++ +
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlkRa~~ 320 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998887 3332 2223344554 4444444 4
Q ss_pred HHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 234 ALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 234 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
...+.|++.+....++..-...|++..|.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 45678999999988988888888876553
No 206
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=9.4e-07 Score=68.72 Aligned_cols=120 Identities=16% Similarity=0.056 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HhhcCcHHHHHHHHHHH------h--------
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ-----ANSVQSADAILAYQRAL------D-------- 202 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~------~-------- 202 (265)
++-..+.+-...|+.-.|+..-.+.++. |+-..++..+|.+| ..+++..+|..++.--+ .
T Consensus 511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df 589 (696)
T KOG2471|consen 511 IFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDF 589 (696)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhh
Confidence 4555666778899999999999998876 55666666666655 45677777776554311 0
Q ss_pred ---------cCCc----------c-----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhC
Q 024618 203 ---------LKPN----------Y-----VRAWANMGISYANQGMYEESVRYYVRALAMNP--KADNAWQYLRISLRYAG 256 (265)
Q Consensus 203 ---------~~~~----------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~ 256 (265)
++|. . ...++++|.++.-+|++++|..++..+..+-| .++.+......+-.++|
T Consensus 590 ~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G 669 (696)
T KOG2471|consen 590 DQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLG 669 (696)
T ss_pred hhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcC
Confidence 0111 0 13568899999999999999999999988877 34555544445556777
Q ss_pred Cccccc
Q 024618 257 RYPNRG 262 (265)
Q Consensus 257 ~~~~A~ 262 (265)
+...|.
T Consensus 670 ~~q~al 675 (696)
T KOG2471|consen 670 RSQDAL 675 (696)
T ss_pred CCcchH
Confidence 776664
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-08 Score=70.16 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=89.9
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
..|..++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|.+......+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 024618 92 AAALKYLYGWLRHHP 106 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~ 106 (265)
++|+..+.++..+..
T Consensus 95 ~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLR 109 (284)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999976543
No 208
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.4e-06 Score=70.70 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCC--------------HHHHHHHHHHHHhhc-CcHHHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQD--------------YSLWNKLGATQANSV-QSADAIL 195 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~--------------~~~~~~l~~~~~~~~-~~~~A~~ 195 (265)
..+..+-+.+|+.|...|++.+|+..|.++-.. ...+ +.-....+..|...| ..+.|..
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence 455678899999999999999999999877432 1111 111122223333333 4444444
Q ss_pred HHHHH------H-----------------hcCC-cchhhHHHHHHHHHhcCCcHHHHHHHHH------HHhc--------
Q 024618 196 AYQRA------L-----------------DLKP-NYVRAWANMGISYANQGMYEESVRYYVR------ALAM-------- 237 (265)
Q Consensus 196 ~~~~~------~-----------------~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~------a~~~-------- 237 (265)
.|.++ + .++| .+|..+...+..+....+|++|...+-. ++.+
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 43332 1 1133 4577788888899999999999877644 3332
Q ss_pred --------CCCC---------chhHHHHHHHHHHhCCcccccc
Q 024618 238 --------NPKA---------DNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 238 --------~~~~---------~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.|.. ...+..+|.++.++|.|..|-+
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 1211 2467778999999999877654
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=4.7e-07 Score=67.10 Aligned_cols=154 Identities=10% Similarity=-0.042 Sum_probs=99.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcc
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARM-SPED---ADVHIVLGVLYNLSR 154 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~ 154 (265)
+.+....|++.+|...+++.++..|.+...+ -..+...|+...-...+++++-. +|+. ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 3444556677777777777777777766555 55666667777777777776655 5554 344445566667777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHH
Q 024618 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRY 230 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 230 (265)
-+++|.+..+++++++|.+..+...++.++...+++.++.++..+.-..-... ..-|...+.++...+.|+.|++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 77777777777777777777777777777777777777777766532211110 12234456666677777777777
Q ss_pred HHHHH
Q 024618 231 YVRAL 235 (265)
Q Consensus 231 ~~~a~ 235 (265)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76654
No 210
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.7e-08 Score=69.18 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=52.6
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
+..+....++..|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 33444445555566666666666666555555666666666666666666666666666665666666666666666666
Q ss_pred HHHHHHHHHh
Q 024618 193 AILAYQRALD 202 (265)
Q Consensus 193 A~~~~~~~~~ 202 (265)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.72 E-value=3.3e-08 Score=51.66 Aligned_cols=42 Identities=33% Similarity=0.612 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHH
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRI 250 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 250 (265)
.++..+|.+|...|++++|++.|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666666666666666666666666666666553
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=3.3e-07 Score=71.11 Aligned_cols=215 Identities=13% Similarity=0.054 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HHHHhhhhhhhhhhhhHHHHHHHHHHHHh------cCCCC-
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LEVLLSLGVSHTNELEQAAALKYLYGWLR------HHPKY- 108 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~- 108 (265)
....+..|.+++...++..|++.....+..-... ..+....-..+....+-++|+.++.-.-+ ..+..
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3467788888888888988888877666543221 11223333445555666666665432211 11110
Q ss_pred -C-----------------CCc-----------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 109 -G-----------------TIA-----------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 109 -~-----------------~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
. ... ...+....+...+..-.+.++....+.+......+..++..|++.+|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0 000 23344555566666666666667778888999999999999999999
Q ss_pred HHHHHHHH-hhCCC--------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---------CC---------cchhhHH
Q 024618 160 IESFQTAL-KLKPQ--------DYSLWNKLGATQANSVQSADAILAYQRALDL---------KP---------NYVRAWA 212 (265)
Q Consensus 160 ~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~---------~~~~~~~ 212 (265)
.+.+...- ...|. ..-.|.++|.+++..|.|.-+..+|.++++. .| ...++.+
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 99886542 22222 2345789999999999999999999999951 11 2346889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA 255 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 255 (265)
+.|..|...|++-.|.++|.++......+|..|..++.+....
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.70 E-value=6e-08 Score=50.67 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV 83 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 83 (265)
.++..+|.+|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456667777777777777777777777777777777666654
No 214
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.1e-06 Score=72.59 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=143.0
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHH------------HHHHhcCCChHHHHhhhhhhhh
Q 024618 19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAM------------MRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~------------~~~~~~~~~~~~~~~~la~~~~ 86 (265)
..|+.+.|.+..+-+ .+..+|-+++..+.+..+.+-|.-++ +++.+ +|+ +.-...|.+..
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence 467888887766544 24567888888888877777665544 33322 232 33344566677
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
.+|..++|+..|.+.-..+ .+-..|...|.+++|.+..+.--++. -...+++.+..+...++.+.|+++|+++
T Consensus 812 eLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 8899999999998876542 23456777888888887765433222 2357888999999999999999999875
Q ss_pred ----------HhhCC----------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---------------------CC
Q 024618 167 ----------LKLKP----------QDYSLWNKLGATQANSVQSADAILAYQRALDL---------------------KP 205 (265)
Q Consensus 167 ----------~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~ 205 (265)
+..+| .++..|...|..+...|+.+.|+.+|..+-.. ..
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhc
Confidence 22333 24567778888889999999999999887432 12
Q ss_pred cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 206 NYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.+..+.+.+|..|...|++.+|+.+|.++-..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888888776543
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.2e-06 Score=57.73 Aligned_cols=208 Identities=12% Similarity=0.078 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhhhhhhhhhhhhHH
Q 024618 23 LSEAVLALEAEVLK-NPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLSLGVSHTNELEQA 92 (265)
Q Consensus 23 ~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~ 92 (265)
..++.+...+.... .|+. ...+..-+.++...+++++|..++.++.+-..++ ..++-..+.+......+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455554444432 2322 3356667788888999999999999998755443 234555666667778888
Q ss_pred HHHHHHHHHHhcCCCCCCCc--------hhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHH
Q 024618 93 AALKYLYGWLRHHPKYGTIA--------PPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDK 158 (265)
Q Consensus 93 ~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 158 (265)
++..+++++....-++...- +.-.....++++|+.+|++++.+...+ .+.+...+.++.+..++++
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 88888888877644333222 222334445566666666655543221 1334444555666666666
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCcchhhHHHHHHHHHhcCCcHHHH
Q 024618 159 AIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILAYQRALDL----KPNYVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 159 A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
|-..+.+-... .++....+.....++....+|..|..+++...++ .|++..+..+|-..| ..|+.++..
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 65555543221 2222233444444455555666666666655443 223334444443332 344555444
Q ss_pred HHH
Q 024618 229 RYY 231 (265)
Q Consensus 229 ~~~ 231 (265)
+.+
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 443
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.68 E-value=1.3e-05 Score=62.83 Aligned_cols=189 Identities=16% Similarity=0.081 Sum_probs=125.2
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHH
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADV 125 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 125 (265)
.+..-..+..+...-++...+|++++|+.++++..|+.-. .....+|..+++++++........ ....+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~--------s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGK--------SQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhch--------hhhhhc
Confidence 3444456778889999999999999999999998887532 234567777777777653321110 000000
Q ss_pred HHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 126 ARLFVEAARMSPED--ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 126 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
...+-......+.+ ..+...+|.+..+.|+.++|++.++..++..|. +..++.++..++...+.|.++...+.+--
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 00010111111111 355678899999999999999999999988775 46789999999999999999999888854
Q ss_pred hc-CCcchhhHHHHHHHHHh-cCC---------------cHHHHHHHHHHHhcCCCCchh
Q 024618 202 DL-KPNYVRAWANMGISYAN-QGM---------------YEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 202 ~~-~~~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~a~~~~~~~~~~ 244 (265)
+. -|+.+...+..+.+-.+ .++ -..|++.+.+|++.+|.-+..
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 33 24555555544443322 111 135778999999999976543
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=5.9e-06 Score=61.51 Aligned_cols=163 Identities=10% Similarity=0.011 Sum_probs=131.6
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc-CCCCCCCc------hhhhhh
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH-HPKYGTIA------PPELSD 118 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~------~~~~~~ 118 (265)
.-+.+.+..|++.+|....++.++..|.+.-++..--.+++.+|+...-...+++++.. +|+.|-.. +-.+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556778899999999999999999999888777778888899999999999998876 55554322 667788
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~ 194 (265)
.|-+++|.+..+++++++|.+.-+...++.++...|++.++.+...+.-..-... ..-|...+.++...+.|+.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999999999999999999999999999999999999988764432221 123556678888889999999
Q ss_pred HHHHHHHh--cCCcch
Q 024618 195 LAYQRALD--LKPNYV 208 (265)
Q Consensus 195 ~~~~~~~~--~~~~~~ 208 (265)
+.|.+-+- +..++.
T Consensus 268 eIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHhhccch
Confidence 99987653 334444
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.63 E-value=4e-06 Score=63.11 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNL-SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
.+.|..+|.++.+..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+...|+.+.|...|+++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4555555666654445556778888888666 566666888888888888888888888888888888888888888888
Q ss_pred HhcCCcch---hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 201 LDLKPNYV---RAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 201 ~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
+..-|... .+|......-.+.|+.+...+..+++.+..|++.
T Consensus 97 i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 97 ISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp CCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 87766544 5777777778888888888888888888877744
No 219
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.3e-05 Score=56.97 Aligned_cols=186 Identities=11% Similarity=0.081 Sum_probs=102.4
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-----CChHHHHh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS------EGWRLLGIAHAENDDDQQAIAAMMRAHEAE-----PTNLEVLL 79 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~ 79 (265)
.+-+..+....+|++|...+.++++-..++. .++-..+........+.++..+++++.... |+....-.
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmal 114 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMAL 114 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHH
Confidence 3445566667777777777777765433321 233444555566667777777777776652 33322222
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhc------CCCCHHHHH
Q 024618 80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARM------SPEDADVHI 144 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 144 (265)
..+--.....++++|+..|++++.+........ +.++.....+.+|-..+.+-... .++....+.
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v 194 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV 194 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence 333333445567777777777776554433222 56666666777766665553322 222233444
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKL----KPQDYSLWNKLGATQANSVQSADAILAY 197 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 197 (265)
....+++...+|..|..+++...++ .|++..+..+|-..| ..|+.++....+
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4455556666777777777776554 233344444443333 445555544443
No 220
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.58 E-value=1.3e-07 Score=73.17 Aligned_cols=105 Identities=14% Similarity=0.264 Sum_probs=64.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (265)
+...+..+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34444555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHH
Q 024618 227 SVRYYVRALAMNPKADNAWQYLRIS 251 (265)
Q Consensus 227 A~~~~~~a~~~~~~~~~~~~~l~~~ 251 (265)
|...|++.....|+++.+...+..|
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6666666666666666555554444
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.56 E-value=5.6e-08 Score=47.38 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=15.9
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 231 YVRALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 231 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
|+++++++|+++.+|.++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445555555555555555555555554443
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3e-06 Score=62.77 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=85.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
+-..|+.+++..+|..|+..|.+.++..-.++ ..|.+.+-+.+..|+|..|+.-..+++.++|.+..+++.-|.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 44679999999999999999999998765544 46778999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcC
Q 024618 86 TNELEQAAALKYLYGWLRHH 105 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~ 105 (265)
+.+..+.+|...++..+.++
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999887764
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.55 E-value=6.1e-05 Score=59.27 Aligned_cols=221 Identities=14% Similarity=0.103 Sum_probs=129.4
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHH
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAA 93 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 93 (265)
.....+..+.+.-++.-+++++.+|+.++++..++.- ......+|..+++++++....... ........|..-+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~~~e 248 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccchhh
Confidence 3445678899999999999999999999999888763 233467888888888775432110 0000000111000
Q ss_pred HHHHHHHHHhcCCCCCCC-----chhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 94 ALKYLYGWLRHHPKYGTI-----APPELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 94 A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
.....+..+.. ++.+..+.|+.++|++.++..++..|. +..+..++..+++..+.+.++...+.+-
T Consensus 249 -------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 249 -------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred -------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 00000011111 155566667777777777777776654 4568888899999999999998888875
Q ss_pred Hhh-CCCCHHHHHHHHHHHHh-hcC---------------cHHHHHHHHHHHhcCCcchhhHHHHH------HHHHhcCC
Q 024618 167 LKL-KPQDYSLWNKLGATQAN-SVQ---------------SADAILAYQRALDLKPNYVRAWANMG------ISYANQGM 223 (265)
Q Consensus 167 ~~~-~~~~~~~~~~l~~~~~~-~~~---------------~~~A~~~~~~~~~~~~~~~~~~~~l~------~~~~~~g~ 223 (265)
-++ -|+++...+..+.+-.+ .++ -..|++.+.+|++.+|.-+..+..+- .-..+.|+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD 401 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD 401 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc
Confidence 433 35555555554443322 111 12467888999999988765443321 12334443
Q ss_pred cHHHHHHHHHHHhcCCCCchhHHHH
Q 024618 224 YEESVRYYVRALAMNPKADNAWQYL 248 (265)
Q Consensus 224 ~~~A~~~~~~a~~~~~~~~~~~~~l 248 (265)
.||+.+---.+..=..-+.++..|
T Consensus 402 -SEAiaYAf~hL~hWk~veGAL~lL 425 (539)
T PF04184_consen 402 -SEAIAYAFFHLQHWKRVEGALNLL 425 (539)
T ss_pred -HHHHHHHHHHHHHHhcCHhHHHHH
Confidence 666666555444333333343333
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.54 E-value=1.1e-07 Score=73.48 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=95.6
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
..+...+..+.|+.|+..|.++++++|++...+-..+.++.+.+++..|+.-+.++++.+|....+++..|.+....+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 56888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCc
Q 024618 92 AAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~ 112 (265)
.+|+..|++.....|+.+.+.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHH
Confidence 999999999999999987654
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0001 Score=52.25 Aligned_cols=161 Identities=10% Similarity=-0.009 Sum_probs=109.8
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhC----CC--ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------HHHhhh
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKN----PE--NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------EVLLSL 81 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l 81 (265)
|..+....+++.|=..|-++-+.. .. ....+...+.+ ++.++.++|+.++++++++..+-. .-+..+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i 119 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI 119 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence 344444455555555555543322 11 12233344444 445589999999999998865543 345578
Q ss_pred hhhhhhh-hhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCCCHH-------HHH
Q 024618 82 GVSHTNE-LEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPEDAD-------VHI 144 (265)
Q Consensus 82 a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 144 (265)
|.+|... .++++|+.+|+++-+......... +..-...+++.+|+..|+++....-++.- .++
T Consensus 120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyfl 199 (288)
T KOG1586|consen 120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFL 199 (288)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHH
Confidence 8888765 899999999999987655433222 66667889999999999999887665543 345
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYS 175 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 175 (265)
.-|.+++-..+.-.+...+++-.+.+|....
T Consensus 200 kAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 200 KAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 5577788878888899999999999997643
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.52 E-value=9.1e-08 Score=46.61 Aligned_cols=32 Identities=44% Similarity=0.828 Sum_probs=16.4
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618 197 YQRALDLKPNYVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44455555555555555555555555555443
No 227
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.7e-06 Score=61.35 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=85.1
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHH--------hCCCChH----------HHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVL--------KNPENSE----------GWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
+.+-..|+.++..|+|.+|...|..++. ..|.+++ .+.+.+.|++..|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3455789999999999999999988864 3355443 567789999999999999999999999
Q ss_pred cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 024618 70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKY 108 (265)
Q Consensus 70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 108 (265)
.+|.+..+++..|.+....=+..+|..-|.++++++|..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999888888888888888888877754
No 228
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.5e-06 Score=60.51 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL--------KPQD----------YSLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
..++..-|.-++..|++.+|...|+.++.. .|.. ...+.+.+.|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356777788889999999999999888643 3444 3567888999999999999999999999
Q ss_pred hcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 202 DLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
...|.+..+++..|.++...=+..+|...|.++++++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999988999999999999999987543
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.49 E-value=6.4e-06 Score=61.99 Aligned_cols=134 Identities=15% Similarity=0.174 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh-hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN-ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY 121 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~-------------------------- 56 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRAR-------------------------- 56 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHH--------------------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHH--------------------------
Confidence 566667777777778888888888876656667777777776554 34433355
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
.+|+.+++..|.+...|......+...|+.+.|..+|++++..-|... .+|......-...|+.+......+
T Consensus 57 -----~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 57 -----KIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp -----HHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred -----HHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555666777777777777788888888888888877655443 567777777777787777777777
Q ss_pred HHHhcCCcc
Q 024618 199 RALDLKPNY 207 (265)
Q Consensus 199 ~~~~~~~~~ 207 (265)
++.+..|.+
T Consensus 132 R~~~~~~~~ 140 (280)
T PF05843_consen 132 RAEELFPED 140 (280)
T ss_dssp HHHHHTTTS
T ss_pred HHHHHhhhh
Confidence 777766653
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.45 E-value=1.9e-05 Score=63.80 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCch-------------hhhh--hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIAP-------------PELS--DSLYYADVARLFVEAARMSPEDADVHIVLGVLYN 151 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (265)
-.|+-+.+++.+.++.+ .++.....+ -+-. .....+.|.+.+....+..|+..-..+..|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45788888888888766 222211110 0001 3455678889999999999998888899999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCc--
Q 024618 152 LSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMY-- 224 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~-- 224 (265)
..|+.++|++.+++++.....- .-.++.+|.++..+.+|++|..++.+..+.+.-. ....+..|.|+...|+.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 9999999999999887532222 2457788889999999999999999988865543 33445678888888988
Q ss_pred -----HHHHHHHHHHHhc
Q 024618 225 -----EESVRYYVRALAM 237 (265)
Q Consensus 225 -----~~A~~~~~~a~~~ 237 (265)
++|.+.+.++-..
T Consensus 359 ~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 359 AKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 8888888877654
No 231
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.45 E-value=3.6e-07 Score=44.75 Aligned_cols=32 Identities=44% Similarity=0.843 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 232
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.43 E-value=5.9e-07 Score=43.98 Aligned_cols=33 Identities=36% Similarity=0.847 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666777777777777777777777766653
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.39 E-value=0.00026 Score=55.48 Aligned_cols=237 Identities=13% Similarity=0.111 Sum_probs=145.1
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------hHHHHhhhhhh
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--------NLEVLLSLGVS 84 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~ 84 (265)
+.+..+.|+++. +.+.+...+ +.++..+..+......++++++..+++++...--. .....+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 567788999998 333333333 23466666777777999999999998888764211 11111111111
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCC----CCc-hhhhh---hhhchHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHc
Q 024618 85 HTNELEQAAALKYLYGWLRHHPKYG----TIA-PPELS---DSLYYADVARLFVEAAR---MSPEDADVHIVLGVLYNLS 153 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~-~~~~~---~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 153 (265)
+....+.+++.......... +... ..| ...-. ....++.-+..-.-++. ........+...+.+....
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~ 159 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKA 159 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHC
Confidence 12233344444333111000 0000 000 00000 00011111111111111 1334567888999999999
Q ss_pred cCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---CC---------------------
Q 024618 154 RQYDKAIESFQTALKLKP----QDYSLWNKLGATQANSVQSADAILAYQRALDL---KP--------------------- 205 (265)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 205 (265)
|.++.|...+.++...++ ..+.+....+.+....|+..+|+..++..+.. .+
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVIS 239 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccc
Confidence 999999999999987642 25678888899999999999999999888771 00
Q ss_pred ----c------chhhHHHHHHHHHhc------CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024618 206 ----N------YVRAWANMGISYANQ------GMYEESVRYYVRALAMNPKADNAWQYLRISLRYA 255 (265)
Q Consensus 206 ----~------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 255 (265)
. ...++..+|...... +..++++..|+++++.+|+...+|..+|..+...
T Consensus 240 ~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 240 STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0 124556677766667 7889999999999999999999999999887765
No 234
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.1e-05 Score=64.09 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=68.5
Q ss_pred hhhHHHHHcCChHHHHHHHHHH------HH----------------hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 12 KEGQELFRKGLLSEAVLALEAE------VL----------------KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~------~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
..|.+....+-|++|..+|++- ++ ..-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 3566667777777777776542 11 01245779999999999999999999999876
Q ss_pred cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 024618 70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH 105 (265)
Q Consensus 70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 105 (265)
++|..+.....+..+.|.|++-++++..+.+..
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 677888888888899999999999888776643
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.38 E-value=1.2e-06 Score=42.89 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN 74 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 74 (265)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777753
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.35 E-value=0.00017 Score=55.63 Aligned_cols=174 Identities=15% Similarity=0.061 Sum_probs=90.9
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHh----CCCChHHHHHHHHHHhh---cCcHHHHHHHHHH-HHhcCCChHHHHhhhhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLK----NPENSEGWRLLGIAHAE---NDDDQQAIAAMMR-AHEAEPTNLEVLLSLGVS 84 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~ 84 (265)
.-..|....+|+.-+.+.+.+-.. .++.+.+.+..|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 334455556666666655554333 23344555556666666 6666666666666 333445556666666666
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618 85 HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ 164 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (265)
|-..= . +.. .......++|+..|.++.+.+|+. ..-.+++.++...|...+...-++
T Consensus 227 yKD~~--~----------~s~----------~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 227 YKDLF--L----------ESN----------FTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHHH--H----------HcC----------ccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHH
Confidence 54220 0 000 011122566667777777666542 233344444444443222221111
Q ss_pred HHH--------hh----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618 165 TAL--------KL----KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 165 ~~~--------~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 209 (265)
+.. +. .-.+......++.+..-.|++++|++.+++++...|....
T Consensus 284 ~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 284 KIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 111 11 1223444556667777788888888888888888766543
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.34 E-value=2e-05 Score=63.62 Aligned_cols=146 Identities=16% Similarity=0.083 Sum_probs=108.9
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHH----HccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPED-ADV------HIVLGVLYN----LSRQYDKAIESFQTALKLKPQDYSLWNKLG 181 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~------~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 181 (265)
..+..-.|+-+.+++.+.++.+...-. +.+ ++.....+. .....+.|.+.+....+..|+.+-..+..|
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 344445678889999999887732211 111 111111111 245678899999999999999999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHhC
Q 024618 182 ATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA-WQYLRISLRYAG 256 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~l~~~~~~~~ 256 (265)
.++...|+.++|++.|++++...... .-.++.+|.++..+++|++|..++.+..+.+.-.... .+..|.++...|
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988544332 2456789999999999999999999999876554333 444788888888
Q ss_pred Cc
Q 024618 257 RY 258 (265)
Q Consensus 257 ~~ 258 (265)
+.
T Consensus 355 ~~ 356 (468)
T PF10300_consen 355 RE 356 (468)
T ss_pred cc
Confidence 88
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.33 E-value=1.6e-06 Score=42.39 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN 74 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 74 (265)
.+++.+|.+++..|++++|+++++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776653
No 239
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.33 E-value=0.00076 Score=52.69 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=41.5
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
|..++.+|+|.++.-+-.-..++.| ++.++..+|.++....+|++|-++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3345678999999999888899999 699999999999999999988654
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00037 Score=51.36 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhhh
Q 024618 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELSDS 119 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~ 119 (265)
-+..+.-....|++.+|...|..++...|++.++...++.++...|+.+.|...+...-....+..... ...+...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 334444455556666666666666666666656666666666666665555544433211111100000 0000000
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK 170 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (265)
....+ ...+++.+..+|++..+-+.++..+...|+.+.|.+.+-..++.+
T Consensus 217 a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 217 AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 00000 022334444566666666666666666666666666666665543
No 241
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00023 Score=51.40 Aligned_cols=230 Identities=16% Similarity=0.097 Sum_probs=159.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH-HHHH
Q 024618 19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA-AALK 96 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~ 96 (265)
+...-..|+.+-..++..+|.+-.+|...-.++..++ +..+-++++..+++-+|.+-.+|...-.+....|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3456688999999999999999888888777766554 5777889999999999999999988888888888877 7888
Q ss_pred HHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cc-----CHHHHHHHHHHHH
Q 024618 97 YLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL-SR-----QYDKAIESFQTAL 167 (265)
Q Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~A~~~~~~~~ 167 (265)
....++..+.++..++ -.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 8899999888888777 5666777779999999999988877666666544222211 11 2344556777788
Q ss_pred hhCCCCHHHHHHHHHHHHh-hc--CcHHHHHHHHHHH-hcCCcchhhHHHHHHHHH------hcCCcH---HHHHHHHHH
Q 024618 168 KLKPQDYSLWNKLGATQAN-SV--QSADAILAYQRAL-DLKPNYVRAWANMGISYA------NQGMYE---ESVRYYVRA 234 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~------~~g~~~---~A~~~~~~a 234 (265)
...|++..+|..+.-++.. .| .+.+........+ ......|..+..+..+|. +.+.-+ +|.+.++..
T Consensus 215 ~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~L 294 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDL 294 (318)
T ss_pred HhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 8899999999998888875 44 2344455555544 333344555555555552 222333 455556554
Q ss_pred H-hcCCCCchhHHHH
Q 024618 235 L-AMNPKADNAWQYL 248 (265)
Q Consensus 235 ~-~~~~~~~~~~~~l 248 (265)
- +.+|-....|...
T Consensus 295 a~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 295 AIKVDPIRKNYWRHK 309 (318)
T ss_pred hhccCcHHHHHHHHH
Confidence 4 5566544444443
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=0.00021 Score=49.26 Aligned_cols=116 Identities=13% Similarity=0.058 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHH
Q 024618 124 DVARLFVEAARMSPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAY 197 (265)
Q Consensus 124 ~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 197 (265)
+.....++....+|... -....++..+...|++++|...++.++....+. +-+-.+++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34445555555555443 345677888999999999999999998653332 345678999999999999999988
Q ss_pred HHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 198 QRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 198 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
...-. +.. +..-...|+++...|+.++|+..|+++++..++.
T Consensus 150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 86432 221 2345568999999999999999999999987553
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.26 E-value=6.4e-05 Score=50.82 Aligned_cols=90 Identities=26% Similarity=0.252 Sum_probs=66.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQD----------------------YSLWNKLGATQANSVQSADAILAYQRALDLK 204 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 204 (265)
|......++.+.++..+++++.+.... ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 444455667777777777777653221 2345567777888999999999999999999
Q ss_pred CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 205 PNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
|.+..++..+..++...|+..+|+..|++...
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
No 244
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.0003 Score=50.84 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=134.7
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhh-hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIA---PPELS-DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD-KAIE 161 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~ 161 (265)
+......|+.....++.++|.+...+ -.++. ...+..+-++++.+.+..+|.+..+|...-.+....|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 34466789999999999999988877 22332 3345778889999999999999999999888888889888 8888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh-cC-----CcHHHHHHHHHHH
Q 024618 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN-QG-----MYEESVRYYVRAL 235 (265)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~a~ 235 (265)
..+.++..+.++..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887777777654333222 22 2344566788899
Q ss_pred hcCCCCchhHHHHHHHHHH
Q 024618 236 AMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~ 254 (265)
...|++..+|..|.-++..
T Consensus 215 ~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HhCCCCccHHHHHHHHHHh
Confidence 9999999999999988875
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.21 E-value=0.00085 Score=51.96 Aligned_cols=169 Identities=15% Similarity=0.088 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhc----CCChHHHHhhhhhhhhh---hhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEA----EPTNLEVLLSLGVSHTN---ELEQAAALKYLYGWLRHHPKYGTIAPPE 115 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 115 (265)
....+-.+|....+|+.-++..+..-.. -++.+.+...+|.++.+ .|+.++|+..+..+
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-------------- 208 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV-------------- 208 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH--------------
Confidence 4444445555666666655555555444 23334444455555544 44554444444432
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN---------LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (265)
.....+.+++.+..+|.+|. .....++|+..|.++.+.+|+. ..-.+++.++..
T Consensus 209 ----------------l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~ 271 (374)
T PF13281_consen 209 ----------------LESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML 271 (374)
T ss_pred ----------------HhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH
Confidence 23334555667777776653 1334889999999999998654 344556666666
Q ss_pred hcCcHHHHHHHHHHH--------hc----CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 187 SVQSADAILAYQRAL--------DL----KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 187 ~~~~~~A~~~~~~~~--------~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
.|...+...-.++.. +. ...+.+..-.++.+..-.|++++|+..+++++.+.|..-
T Consensus 272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 665433322222211 11 122334555678888889999999999999999987654
No 246
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=0.00083 Score=55.77 Aligned_cols=223 Identities=20% Similarity=0.100 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc-----CcHHHHHHHHHHHHhc-----CCChHHHHhhhhhhhhhhh---
Q 024618 23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAEN-----DDDQQAIAAMMRAHEA-----EPTNLEVLLSLGVSHTNEL--- 89 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~--- 89 (265)
...|..+++.+.+. .+..+...+|.++..- .+.+.|+.++..+.+. ....+.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777776544 4567777777777654 5788888888888661 1114556777888777632
Q ss_pred --hHHHHHHHHHHHHhcCCCCCCCc-hhhhhhhh---chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHH
Q 024618 90 --EQAAALKYLYGWLRHHPKYGTIA-PPELSDSL---YYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKA 159 (265)
Q Consensus 90 --~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 159 (265)
+...|+.++.++......+.... +.++.... +...|..+|..+... .+..+.+.++.++.. ..+...|
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 67778888888887766555444 44444333 467888888888764 446777777777754 3477888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhh-cCcHHHHHHHHHHHhc-----------------------------------
Q 024618 160 IESFQTALKLKPQDYSLWNKLGATQANS-VQSADAILAYQRALDL----------------------------------- 203 (265)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----------------------------------- 203 (265)
..++.++.+.. ++.+...++..+..- +.++.+.-.+....+.
T Consensus 384 ~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 88888888775 334444444433222 3333332222211111
Q ss_pred -----CCcchhhHHHHHHHHHhc----CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 204 -----KPNYVRAWANMGISYANQ----GMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 204 -----~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
...++.+...+|.+|..- .+++.|...|.++.... ....+++|.++..
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~ 518 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEH 518 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhc
Confidence 122344556677776654 34788888888887765 6777777776653
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00018 Score=52.91 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=105.6
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhhcCcH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-SLWNKLGATQANSVQSA 191 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 191 (265)
+.-....|++.+|...+..++...|.+..+...++.++...|+.+.|...+...-....... .........+.......
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 55667788899999999999999999999999999999999999999888766432222211 11111123333333333
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhCCcc
Q 024618 192 DAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP--KADNAWQYLRISLRYAGRYP 259 (265)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~ 259 (265)
+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+- .+..+...+-.++...|..+
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 32 234555677999999999999999999999999999998888754 34566777777777766544
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.16 E-value=0.0003 Score=47.58 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677788889999999999999999999999999999999999999999999999988754
No 249
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.14 E-value=1.9e-06 Score=64.06 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=78.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (265)
+.-.+..|.+++|++.|..++.++|.....+...+.++.++++...|++-+..+++++|+....+-..|.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34455678888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCC
Q 024618 227 SVRYYVRALAMNPK 240 (265)
Q Consensus 227 A~~~~~~a~~~~~~ 240 (265)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 88888888877543
No 250
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.14 E-value=7.3e-05 Score=59.94 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=84.6
Q ss_pred HccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH
Q 024618 152 LSRQYDKAIESFQTALKLKPQDY-SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY 230 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (265)
..|+...|+.++..++...|... ....+++.+..+.|-...|-..+.+++.+..+.+-.++.+|..+..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46778888888888888777543 44678889999889888999999999999888888889999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHH
Q 024618 231 YVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 231 ~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
|+++++.+|+++..-..|-.+-+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999998877665544433
No 251
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.0026 Score=50.96 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=145.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHhhcCc--------------HHHHHHHHHHHHhcCC-ChHHHHhhhhhhhhhh---h
Q 024618 28 LALEAEVLKNPENSEGWRLLGIAHAENDD--------------DQQAIAAMMRAHEAEP-TNLEVLLSLGVSHTNE---L 89 (265)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~---~ 89 (265)
-.+++++..-+-.++.|+..+..+...++ -+++.+++++++..-. .+...++.++..-... +
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 34667777777788888776665555555 6788888888876433 2344445454433222 2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCch----hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIAP----PELSDSLYYADVARLFVEAARMSPEDADVHIVLGV-LYNLSRQYDKAIESFQ 164 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~ 164 (265)
..+..-..+++++.....++...- ....+..-...|...|.++-+.....-.++..-|. -|...++..-|...|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 366677788888877666666552 23333444566667777776543332234443333 2456799999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL--KPNY-VRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
-.++..++++..-......+...++-..|...|++++.. .|+. .+.|..+-..-..-|+....++.-++-....|
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999999888889999999999999999999987 3332 46777777777788888888877776665555
No 252
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.9e-05 Score=57.11 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
-+..-|.-|+..++|..|+..|.+.++..-.+ ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.-+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34455666677777777777777777654333 34566677777777777777777777777777777777777777
Q ss_pred HHhcCCcHHHHHHHHHHHhcC
Q 024618 218 YANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 218 ~~~~g~~~~A~~~~~~a~~~~ 238 (265)
++.+.++.+|..+++..+.++
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 777777777766666665543
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=0.00042 Score=47.88 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=55.2
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 024618 77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156 (265)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (265)
+-..++..+...+++++|+..++.++....+. .+. ..+-..++.+....|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-------------------~lk---------~l~~lRLArvq~q~~k~ 142 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDE-------------------NLK---------ALAALRLARVQLQQKKA 142 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhH-------------------HHH---------HHHHHHHHHHHHHhhhH
Confidence 34445666666667777776666666543221 010 23345566666666666
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
++|+..+...... .-.+......|.++...|+-++|+..|+++++..++
T Consensus 143 D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 143 DAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 6666666543221 111233455666666666666666666666665533
No 254
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.10 E-value=5.9e-06 Score=40.34 Aligned_cols=32 Identities=41% Similarity=0.808 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.+|+.+|.++..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666677777777777777777777766663
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.06 E-value=0.0032 Score=49.38 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=92.8
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CC-C--------------
Q 024618 113 PPELSDSLYYADVARLFVEAARMSP----EDADVHIVLGVLYNLSRQYDKAIESFQTALKL-KP-Q-------------- 172 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-~-------------- 172 (265)
+.+....|.++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+.. .. .
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL 232 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc
Confidence 5566677777777777777776542 24667777788888888888888888777761 00 0
Q ss_pred ------------------CHHHHHHHHHHHHhh------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC-----
Q 024618 173 ------------------DYSLWNKLGATQANS------VQSADAILAYQRALDLKPNYVRAWANMGISYANQGM----- 223 (265)
Q Consensus 173 ------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 223 (265)
...++..+|...... +..++++..|.++++..|+...+|+..|..+...=.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~ 312 (352)
T PF02259_consen 233 ESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPRE 312 (352)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhc
Confidence 124566667766666 888999999999999999999999988887765411
Q ss_pred ------------cHHHHHHHHHHHhcCCC
Q 024618 224 ------------YEESVRYYVRALAMNPK 240 (265)
Q Consensus 224 ------------~~~A~~~~~~a~~~~~~ 240 (265)
...|+..|-+++...++
T Consensus 313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 313 KEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13478888888888776
No 256
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.00 E-value=0.0049 Score=49.46 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=53.4
Q ss_pred CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
||+. ...|+.+.+.+..+ .+++....|++.+...|..+.+|.......+..++|+.....|.+++..
T Consensus 16 nP~d-i~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 16 NPYD-IDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred CCcc-HHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5532 33466666665555 8999999999999999999999999888889999999999988888753
No 257
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=98.00 E-value=0.0011 Score=51.80 Aligned_cols=99 Identities=14% Similarity=-0.082 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhcCC-----cchhhHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLG-ATQANSVQSADAILAYQRALDLKP-----NYVRAWANM 214 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l 214 (265)
+.+.....+.+.|-+..|.+..+-.+.++|. +|-...... ....+.++++--+..++....... .-|..-+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4555567778888899999999988998888 664443333 344566777766776666544211 134566778
Q ss_pred HHHHHhcCCc---------------HHHHHHHHHHHhcCCC
Q 024618 215 GISYANQGMY---------------EESVRYYVRALAMNPK 240 (265)
Q Consensus 215 ~~~~~~~g~~---------------~~A~~~~~~a~~~~~~ 240 (265)
+.+++..++. ++|...+.+|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888888 8899999999887664
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.00 E-value=0.0033 Score=47.48 Aligned_cols=218 Identities=14% Similarity=0.068 Sum_probs=131.0
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHhhcC-cHHHHHHHHHHHHhc----CCC---h------
Q 024618 17 LFRKGLLSEAVLALEAEVLKN-PENS-------EGWRLLGIAHAEND-DDQQAIAAMMRAHEA----EPT---N------ 74 (265)
Q Consensus 17 ~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~----~~~---~------ 74 (265)
....|+++.|..++.++-... ..++ ...+..|......+ +++.|...++++.++ .+. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986654 2233 36677888888899 999999999999887 221 1
Q ss_pred -HHHHhhhhhhhhhhhhHH---HHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCC-CCHHHHHHH
Q 024618 75 -LEVLLSLGVSHTNELEQA---AALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSP-EDADVHIVL 146 (265)
Q Consensus 75 -~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l 146 (265)
..++..++.++...+..+ +|....+.+-...|+.+... ..++...++.+++.+.+.+++...+ .....-..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 246777888888776554 45555556655666655544 4445557778888889988887654 222222222
Q ss_pred HHH-HHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH---HHhhc--CcHHH--HHHHHHHHh----c--CCcch--
Q 024618 147 GVL-YNLSRQYDKAIESFQTALKL--KPQDYSLWNKLGAT---QANSV--QSADA--ILAYQRALD----L--KPNYV-- 208 (265)
Q Consensus 147 ~~~-~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~---~~~~~--~~~~A--~~~~~~~~~----~--~~~~~-- 208 (265)
..+ .........+...+...+.. .|.... +.....+ +...+ +.... ++.....+. . .|-.+
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 222 12234456677777776653 222211 3332222 22211 11122 222222222 1 12111
Q ss_pred -----hhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 209 -----RAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 209 -----~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
..+.+.|...++.++|++|+.+|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 234567888899999999999998776
No 259
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.97 E-value=3.2e-06 Score=62.89 Aligned_cols=85 Identities=12% Similarity=-0.018 Sum_probs=46.5
Q ss_pred hhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHH
Q 024618 52 AENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARL 128 (265)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~ 128 (265)
+..|.++.|++.+..++.++|.....+...+.++..+++...|+.-+..++.++|+...-+ +.....+|+|.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555555544333 4555555555555555
Q ss_pred HHHHHhcC
Q 024618 129 FVEAARMS 136 (265)
Q Consensus 129 ~~~~~~~~ 136 (265)
+..+.+++
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 55555544
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.97 E-value=0.0015 Score=54.26 Aligned_cols=213 Identities=18% Similarity=0.146 Sum_probs=127.8
Q ss_pred CChHHHHHHHHHHHHh-----CCCChHHHHHHHHHHhhcC-----cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-
Q 024618 21 GLLSEAVLALEAEVLK-----NPENSEGWRLLGIAHAEND-----DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL- 89 (265)
Q Consensus 21 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~- 89 (265)
.+.+.|+.+++.+... .-..+.+.+.+|.+|.... +...|..++.++-+.. ++.+.+.+|.++....
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK 340 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence 5677777777777651 1124556677777776643 5677777777776653 4556666666666444
Q ss_pred --hHHHHHHHHHHHHhcCCCCCCCchhhhhh-----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHH
Q 024618 90 --EQAAALKYLYGWLRHHPKYGTIAPPELSD-----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-RQYDKAIE 161 (265)
Q Consensus 90 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~ 161 (265)
+...|..+|..+.+..-.........+.. ..+...|..+++++.+.. .+.+...++.++... ++++.+..
T Consensus 341 ~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHH
Confidence 55677777777766544433333222222 235667777777777665 233333333332211 33333333
Q ss_pred HHHHHHhh----------------------------------------CCCCHHHHHHHHHHHHhh----cCcHHHHHHH
Q 024618 162 SFQTALKL----------------------------------------KPQDYSLWNKLGATQANS----VQSADAILAY 197 (265)
Q Consensus 162 ~~~~~~~~----------------------------------------~~~~~~~~~~l~~~~~~~----~~~~~A~~~~ 197 (265)
.+...... ...++.+...+|.+|..- .+++.|...|
T Consensus 419 ~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y 498 (552)
T KOG1550|consen 419 LYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQY 498 (552)
T ss_pred HHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHH
Confidence 32222111 123445666677766654 4588999999
Q ss_pred HHHHhcCCcchhhHHHHHHHHHhc---CCcHHHHHHHHHHHhcCCC
Q 024618 198 QRALDLKPNYVRAWANMGISYANQ---GMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~ 240 (265)
.++.... +...+++|.++..- .....|..++.++.+.+..
T Consensus 499 ~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 499 ARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 9988776 78899999988752 1268999999998876654
No 261
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.91 E-value=0.0052 Score=47.46 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh---hcCcHHHHHHHHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN---SVQSADAILAYQR 199 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~ 199 (265)
+.-+.+++++++.+|++...+..+-....+..+.++....+++++..+|+++..|...-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455667777777888888777777777777778888888888888888888777665554333 2245566666666
Q ss_pred HHhcCC------------------cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 200 ALDLKP------------------NYVRAWANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 200 ~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
++..-. ....++..+.....+.|..+.|+..++-.++++
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 654310 012345567777778888888888888888864
No 262
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.90 E-value=2.7e-05 Score=37.90 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (265)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666777777777777777777777776663
No 263
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.89 E-value=0.00086 Score=51.67 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=106.3
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHhhcCc------------HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618 28 LALEAEVLKNPENSEGWRLLGIAHAENDD------------DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 95 (265)
..+++.++.+|.+.++|..+....-..-. .+.-+.++++|++.+|++...+..+-.......+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999988776543322 456788999999999999998888888888888888889
Q ss_pred HHHHHHHhcCCCCCCCc-hhhhhhhh-----chHHHHHHHHHHHhcCC----C--------------CHHHHHHHHHHHH
Q 024618 96 KYLYGWLRHHPKYGTIA-PPELSDSL-----YYADVARLFVEAARMSP----E--------------DADVHIVLGVLYN 151 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~a~~~~~~~~~~~~----~--------------~~~~~~~l~~~~~ 151 (265)
+.+++++..+|.+...| ..+-..++ .+......|.+++..-. . ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999988887 33322222 35556666665554310 0 1235566677778
Q ss_pred HccCHHHHHHHHHHHHhhCC
Q 024618 152 LSRQYDKAIESFQTALKLKP 171 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~ 171 (265)
+.|-.+.|+..++-.++.+-
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
Confidence 88999999999999888754
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.89 E-value=0.0089 Score=48.57 Aligned_cols=121 Identities=11% Similarity=-0.053 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-CCcchhhHHHHHHHHHh
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL-KPNYVRAWANMGISYAN 220 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 220 (265)
.|......-...|+++...-.+++++--.......|...+......|+.+-|-..+..+.+. .|+.+.....-+.+-..
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 44445555566777777777777777666666777888777777778877777777777665 35556667777777788
Q ss_pred cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
.|++..|...+++..+..|+...+-..-.....+.|+.+.+.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 889999999999888877887766666666666777665543
No 265
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0041 Score=49.21 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=137.6
Q ss_pred hcCcHHHHHHHHHHHHhcCCC------hH--------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--Cc----
Q 024618 53 ENDDDQQAIAAMMRAHEAEPT------NL--------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT--IA---- 112 (265)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~------~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~---- 112 (265)
..|-+++|.++-++++..... .. ..+-.+..|-.-.|++.+|++....+.......+. ..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 467788888888888764211 11 23445566777789999999888777665444433 11
Q ss_pred -------hhhhhhhhchHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------
Q 024618 113 -------PPELSDSLYYADVARLFVEAARMSPED---ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD--------- 173 (265)
Q Consensus 113 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 173 (265)
|......+.++.|...|..+.+..... .....++|..|.+.|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 555566677888998888888764432 24456789999998876655554443 34432
Q ss_pred -HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC---CCCch
Q 024618 174 -YSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMN---PKADN 243 (265)
Q Consensus 174 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~ 243 (265)
..+++..|...+.++++.||...+.+.++..... .-.+..+|.+..-.|+..++.+..+-++++. |+.+.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 3567777888889999999999999999875221 2345668899999999999999998888764 44332
Q ss_pred h---HHHHHHHHHHhCC
Q 024618 244 A---WQYLRISLRYAGR 257 (265)
Q Consensus 244 ~---~~~l~~~~~~~~~ 257 (265)
- ...+-.++...|+
T Consensus 524 qLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 524 QLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 2 2234556666665
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.88 E-value=0.011 Score=50.38 Aligned_cols=224 Identities=16% Similarity=0.034 Sum_probs=144.7
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCC--C-------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-----HH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPE--N-------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-----LE 76 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~ 76 (265)
+..+.......++.+|..++.++-..-|. . ....-..|.+....|++++|....+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 45688888999999999999988765443 1 1234456788899999999999999999987764 45
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhch--HHHHHHHHHH----HhcCCCCHH
Q 024618 77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---------PPELSDSLYY--ADVARLFVEA----ARMSPEDAD 141 (265)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~a~~~~~~~----~~~~~~~~~ 141 (265)
+...+|.+..-.|++++|..+...+.+........+ +.++..+|+. .+....+... +...|....
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 778888999999999999999998888754443332 5666677732 2222333222 222333333
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCC--HH-HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hh----
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKL----KPQD--YS-LWNKLGATQANSVQSADAILAYQRALDLKPNY-VR---- 209 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~---- 209 (265)
.....+.++...-+++.+..-....++. .|.. +. ....++.+....|+.++|...+.+....-.+. +.
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 3333344333333366665555555543 2222 22 23478889999999999999888876553222 11
Q ss_pred --hHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 210 --AWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 210 --~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+..........+|+.++|.....+.
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1112223345678888888888774
No 267
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0075 Score=47.83 Aligned_cols=211 Identities=12% Similarity=0.059 Sum_probs=141.8
Q ss_pred HcCChHHHHHHHHHHHHhC---CC---ChH--------HHHHHHHHHhhcCcHHHHHHHHHHHHhc---CCC-------h
Q 024618 19 RKGLLSEAVLALEAEVLKN---PE---NSE--------GWRLLGIAHAENDDDQQAIAAMMRAHEA---EPT-------N 74 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~---~~---~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-------~ 74 (265)
-.|-+++|.++-++++... |. ... .+-.+.-|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4566777877777776542 11 111 2334566677889999999988887764 343 3
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------hhhhhhhhchHHHHHHHHHHHhcCCCC---------
Q 024618 75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------PPELSDSLYYADVARLFVEAARMSPED--------- 139 (265)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 139 (265)
+..++.+|......+.++.|...|..+.+......... +..|...++-+.--+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 56788888888888999999999999988655432211 5666666655444444333 34442
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC---Ccchh
Q 024618 140 -ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSVQSADAILAYQRALDLK---PNYVR 209 (265)
Q Consensus 140 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 209 (265)
..+++..|...+.++++.+|...+.+.++.... ..-.+..+|.+....|+..++.....-++... |+.+.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 256777788889999999999999999987521 13456778888999999999998887777654 33332
Q ss_pred ---hHHHHHHHHHhcCC--cHHHHHHHH
Q 024618 210 ---AWANMGISYANQGM--YEESVRYYV 232 (265)
Q Consensus 210 ---~~~~l~~~~~~~g~--~~~A~~~~~ 232 (265)
....+-.++...|+ .+...+.+.
T Consensus 524 qLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 524 QLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 22335566777777 444444443
No 268
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.78 E-value=0.0085 Score=50.71 Aligned_cols=255 Identities=13% Similarity=0.010 Sum_probs=160.3
Q ss_pred chhhhHHHH-HcCChHHHHHHHHHHHHhCCC--ChH----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC---h-HHHH
Q 024618 10 PLKEGQELF-RKGLLSEAVLALEAEVLKNPE--NSE----GWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---N-LEVL 78 (265)
Q Consensus 10 ~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~-~~~~ 78 (265)
.++.|.+++ ...+++.|...+.+++..... ..+ +.+.++.++.+.+... |...+++.++.... . ....
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 467788877 678999999999999776633 222 3455788888888777 99999998876544 1 2222
Q ss_pred hhhh--hhhhhhhhHHHHHHHHHHHHhcCC--CCCCCc-------hhhhhhhhchHHHHHHHHHHHhc------CCC---
Q 024618 79 LSLG--VSHTNELEQAAALKYLYGWLRHHP--KYGTIA-------PPELSDSLYYADVARLFVEAARM------SPE--- 138 (265)
Q Consensus 79 ~~la--~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~------~~~--- 138 (265)
+.+- ......+++..|+..++.+..... .++... +.+....+..+++++.++++... +|.
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 2222 222223789999999998887663 333222 55566667677777777766332 111
Q ss_pred -CHHHHHHHHH--HHHHccCHHHHHHHHHHHHh---h---CC---C---C-----------------H------------
Q 024618 139 -DADVHIVLGV--LYNLSRQYDKAIESFQTALK---L---KP---Q---D-----------------Y------------ 174 (265)
Q Consensus 139 -~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~---~---~~---~---~-----------------~------------ 174 (265)
...++..+-. +....|+++.+...+++.-+ . .+ . + +
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~ 300 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY 300 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHH
Confidence 1234444433 45667777777666554422 1 11 0 0 0
Q ss_pred -HHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-------Ccc-------------------hhhHHHHHHHHHhcCCcHHH
Q 024618 175 -SLWNKLGATQANSVQSADAILAYQRALDLK-------PNY-------------------VRAWANMGISYANQGMYEES 227 (265)
Q Consensus 175 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~l~~~~~~~g~~~~A 227 (265)
-++..-|......+..++|.++++++++.- +.. ....+..+.+..-.|++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 123333555666677778888888776541 110 11335577778889999999
Q ss_pred HHHHHHHHhcC---CC------CchhHHHHHHHHHHhCCcccccccC
Q 024618 228 VRYYVRALAMN---PK------ADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 228 ~~~~~~a~~~~---~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
....+.+.+.. |. .+..++..|..+...|+.+.|...|
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y 427 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY 427 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99888776543 22 2566778899999999999998765
No 269
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.77 E-value=0.00075 Score=42.18 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=72.1
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHhhcCc-----------HHHHHHHHHHHHhcCCChHHHH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSE---GWRLLGIAHAENDD-----------DQQAIAAMMRAHEAEPTNLEVL 78 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~ 78 (265)
+|..++..|++-+|+++.+..+...+++.. .+..-|.++..+.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 578899999999999999999998887764 44556777655432 3368899999999999998888
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRH 104 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~ 104 (265)
+.+|.-+.....|+++....++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777777777777777776654
No 270
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.77 E-value=5.5e-05 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 271
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.75 E-value=0.0027 Score=49.76 Aligned_cols=210 Identities=12% Similarity=0.023 Sum_probs=120.6
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc---
Q 024618 28 LALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH--- 104 (265)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--- 104 (265)
-.+++++...|-.++.|+.........++-+.|+....+++...|. ....++.+|...++.+....+|+++.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 3467788888888999999888888999999999998888776665 6777888887777777766767665431
Q ss_pred -----CCC-------CCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHc
Q 024618 105 -----HPK-------YGTIA------------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV-LYNLS 153 (265)
Q Consensus 105 -----~~~-------~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 153 (265)
..+ ++... ........-.+.|..+|-++-+..-....++..-|. -+...
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 000 01000 000111112233334444433322111222222222 23445
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhcCCcHHHHHHH
Q 024618 154 RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
|++..|...|+-.+...|+++......-..+...++-..|...|++++..-... ...|-.+-.--..-|+...+...=
T Consensus 446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 666666666666666666666555555555566666666666666665432222 334444444445556666666655
Q ss_pred HHHHhcCCC
Q 024618 232 VRALAMNPK 240 (265)
Q Consensus 232 ~~a~~~~~~ 240 (265)
++..+..|.
T Consensus 526 ~rf~e~~pQ 534 (660)
T COG5107 526 ERFRELVPQ 534 (660)
T ss_pred HHHHHHcCc
Confidence 666666555
No 272
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.72 E-value=7.6e-05 Score=35.94 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPT 73 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (265)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444444554455555555555555444443
No 273
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.71 E-value=0.0026 Score=53.08 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=106.6
Q ss_pred hHHHHHcCChHHHHHHHHHH------HHh----CCCChH-HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618 14 GQELFRKGLLSEAVLALEAE------VLK----NPENSE-GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~------~~~----~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 82 (265)
|..+-+..++++|+++|++. ++. .|.... .--..|.-+...|+++.|+..|-.+-.+ ..-.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kai 739 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAI 739 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHH
Confidence 45555566677777766542 222 132211 1122456666777777777777654211 1112
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCC--chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTI--APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI 160 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 160 (265)
.......++.+|+..++............ .+.-|...|+++.|.++|.++- ....-..+|.+.|+|.+|.
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHH
Confidence 23334556666666665544333222211 1666777777777777776532 2222344566677777777
Q ss_pred HHHHHHHhhCCCC-HHHHHHHHHHHHhhcCcH-------------HHHHHHHHHH----------hcCCcc-hhhHHHHH
Q 024618 161 ESFQTALKLKPQD-YSLWNKLGATQANSVQSA-------------DAILAYQRAL----------DLKPNY-VRAWANMG 215 (265)
Q Consensus 161 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-------------~A~~~~~~~~----------~~~~~~-~~~~~~l~ 215 (265)
+.-.++.. |.. ...+...+.-+-..|++. .|+..|.+.- +..|+. .+....+|
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA 889 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence 66665532 222 223333343344444443 3444443321 011221 34566677
Q ss_pred HHHHhcCCcHHHHHHHHHHHh
Q 024618 216 ISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.-+...|+...|.+.|-++-+
T Consensus 890 ~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHHHhccChhHHHHHHHhhhh
Confidence 778888888888888876643
No 274
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.70 E-value=0.00085 Score=54.16 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=78.0
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDA-DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSA 191 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (265)
|......|+...|..++..++...|... ....+++.+++..|-..+|-..+.+++.++...|-.++.+|..+....+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4555567778888888888887777543 346677888888887788888888888887777778888888888888888
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHH
Q 024618 192 DAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
.|++.|+.++..+|+++..-..+-
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHH
Confidence 888888888888888766554443
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.70 E-value=0.013 Score=44.79 Aligned_cols=185 Identities=21% Similarity=0.184 Sum_probs=118.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----h
Q 024618 17 LFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----E 88 (265)
Q Consensus 17 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~ 88 (265)
....+++..|...+.++... .++.....++.++.. ..+..+|..+|..+ ....++.+.+.+|.++.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcc
Confidence 34556677777777776542 223566666666644 34567777777744 334566677777777664 2
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-------CHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED-ADVHIVLGVLYNLSR-------QYDKAI 160 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~A~ 160 (265)
.+..+|..+| .++....... ......++.++..-+ +...|+
T Consensus 127 ~d~~~A~~~~-------------------------------~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 127 LDLVKALKYY-------------------------------EKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred cCHHHHHHHH-------------------------------HHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 2444555444 4444432222 233566666655431 234788
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC--------------
Q 024618 161 ESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYANQG-------------- 222 (265)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------- 222 (265)
..|.++.... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~ 250 (292)
T COG0790 176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKE 250 (292)
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccC
Confidence 8888887764 77888888887765 3578899999999988776 67777888 666555
Q ss_pred -CcHHHHHHHHHHHhcCCCC
Q 024618 223 -MYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 223 -~~~~A~~~~~~a~~~~~~~ 241 (265)
+...|..++..+....+..
T Consensus 251 ~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 251 EDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CCHHHHHHHHHHHHHcCChh
Confidence 7778888888887765543
No 276
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0084 Score=51.93 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=96.8
Q ss_pred ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618 73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL 152 (265)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (265)
+.+.+|..+|.+....|...+|++.|-++ .+|....-........|.|++-++++.-+-+.... +.+-..+...|.+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAK 1178 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHH
Confidence 45678888888888888888888777543 12222222256666777777777777666554322 3333444455555
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV 232 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (265)
.++..+-.+.+ ..|+.+ -....|.-++..|.|+.|.-.|.. ..-|..++..+..+|+|+.|.+..+
T Consensus 1179 t~rl~elE~fi-----~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-----AGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hchHHHHHHHh-----cCCCch-hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 56555443332 234443 335567777777777777766653 3446677888888888888888877
Q ss_pred HHHhcCCCCchhHHHHHHHHHH
Q 024618 233 RALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 233 ~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
++- +...|.....+...
T Consensus 1245 KAn-----s~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1245 KAN-----STKTWKEVCFACVD 1261 (1666)
T ss_pred hcc-----chhHHHHHHHHHhc
Confidence 752 33444444444433
No 277
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.67 E-value=0.00017 Score=53.37 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=66.4
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
++.|....+.|+.++|..+|+.++...|++++++..+|...-..++.-+|-.+|-+++.++|.+.+++.+.++..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 355667778999999999999999999999999999999998889999999999999999999998888776543
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.66 E-value=0.0021 Score=43.27 Aligned_cols=83 Identities=16% Similarity=-0.040 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
.+..+...-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34444555556666777777776666667777777777777777777777777777776666666666666666666666
Q ss_pred CCc
Q 024618 222 GMY 224 (265)
Q Consensus 222 g~~ 224 (265)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 653
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0015 Score=51.63 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC-cHHHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ-SADAILAYQRA 200 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 200 (265)
...-...|+.+....+.++..|........+.+.+.+--..|.+++..+|+++..|..-+.-.+..+. .+.|...|.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 44556777888888888888888877777777778888888888888888888888887776666555 77788888888
Q ss_pred HhcCCcchhhHHHH
Q 024618 201 LDLKPNYVRAWANM 214 (265)
Q Consensus 201 ~~~~~~~~~~~~~l 214 (265)
+..+|+.+..|...
T Consensus 167 LR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEY 180 (568)
T ss_pred hhcCCCChHHHHHH
Confidence 88888887776543
No 280
>PRK10941 hypothetical protein; Provisional
Probab=97.66 E-value=0.00091 Score=49.73 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+-.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 345566677777888888888888888888887777778888888888888888888888888877765443
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.66 E-value=8.3e-05 Score=36.69 Aligned_cols=26 Identities=46% Similarity=0.813 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 211 WANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
+..+|.+|.+.|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666443
No 282
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.57 E-value=0.00055 Score=36.86 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
.++.+|..+.++|+|++|..+.+.++++.|++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34556666666666666666666666666666555433
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.54 E-value=0.0026 Score=42.84 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
..+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34556666677888999999999998899999999999999999999999999999999999999989888889999988
Q ss_pred hCCc
Q 024618 255 AGRY 258 (265)
Q Consensus 255 ~~~~ 258 (265)
+|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 8875
No 284
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.54 E-value=0.0022 Score=40.09 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=62.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcC-----------cHHHHHHHHHHHhcCCcchhhHH
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQ-----------SADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
+.-++..|++-+|++..+..+...+++. ..+..-|.++..+.. .-.+++.+.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4455666777777777777766655554 344445555543321 23478888888888898888888
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 213 NMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.+|.-+....-|+++..-.++++..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 8888777777788888888887765
No 285
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.004 Score=49.42 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-YDKAIESFQTA 166 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~ 166 (265)
...-...|+.+....+.+...| .....+.+.+.+--..|.+++..+|+++++|..-|.-.+..+. .+.|...+.++
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3455677888888888888877 3334444558889999999999999999999999988777766 99999999999
Q ss_pred HhhCCCCHHHHHHHHH
Q 024618 167 LKLKPQDYSLWNKLGA 182 (265)
Q Consensus 167 ~~~~~~~~~~~~~l~~ 182 (265)
++.+|+++..|...-.
T Consensus 167 LR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhcCCCChHHHHHHHH
Confidence 9999999988765433
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.51 E-value=0.00021 Score=35.19 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 44 WRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
+..+|.+|...|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55667777777777777777777443
No 287
>PRK10941 hypothetical protein; Provisional
Probab=97.50 E-value=0.0028 Score=47.22 Aligned_cols=77 Identities=13% Similarity=0.001 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
....++-.++.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+-.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34566777899999999999999999999999999999999999999999999999999999999988766544443
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.50 E-value=0.00048 Score=51.06 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH----
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA---- 219 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---- 219 (265)
...+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+...-
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~ 199 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSA 199 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHH
Confidence 3445556778999999999999999999999999999999999999999999999999999999998887655321
Q ss_pred hcCCcHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 024618 220 NQGMYEESVRYYVRALAMNPKA-DNAWQYLRISLRY 254 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~ 254 (265)
--.++-+.+..-...+..-+.. ......+-..|+.
T Consensus 200 iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 200 IDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 1122333444444444333333 3333444455543
No 289
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.49 E-value=0.0042 Score=37.87 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcC
Q 024618 126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD--YSLWNKLGATQANSVQ 189 (265)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 189 (265)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555666666666666666666666666666666666666665543 3333333344444443
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.48 E-value=0.0041 Score=37.92 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHhcCCc
Q 024618 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY--VRAWANMGISYANQGMY 224 (265)
Q Consensus 159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 224 (265)
.+..+++.+..+|++..+.+.++..+...|++++|++.+-.++..+++. ..+...+-.++...|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3455667777777777777777777777777777777777777776654 33444444455555543
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.47 E-value=0.00075 Score=36.33 Aligned_cols=40 Identities=20% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL 81 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 81 (265)
+.++.+|..+++.|+|++|..+.+.+++.+|++..+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3456677777777777777777777777777776654443
No 292
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.044 Score=51.81 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-----------
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----------- 207 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 207 (265)
-.+.|...|++....|.++.|...+-.+.+.. -+.+....|..+...|+-..|+..+++.++.+-.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 35789999999999999999999999888765 57889999999999999999999999999653211
Q ss_pred ------hhhHHHHHHHHHhcCCc--HHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 208 ------VRAWANMGISYANQGMY--EESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 208 ------~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
..+...++......|+. .+-+..|+.+.+..|...+.++.+|.-|.+
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 12334455555555653 345678899999999888888888855543
No 293
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.45 E-value=0.023 Score=47.72 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCC
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGM 223 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 223 (265)
.++.-|...|+++.|.+.|.++- ....-...|-+.|++..|.+.-+++. .|.. ...|...+.-....|+
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 34444445555555554444331 11112233444455555444444332 1221 2233344444455555
Q ss_pred cHHHHHHH
Q 024618 224 YEESVRYY 231 (265)
Q Consensus 224 ~~~A~~~~ 231 (265)
+.+|...|
T Consensus 840 f~eaeqly 847 (1636)
T KOG3616|consen 840 FAEAEQLY 847 (1636)
T ss_pred hhhhhhee
Confidence 55555444
No 294
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.44 E-value=0.046 Score=44.67 Aligned_cols=180 Identities=12% Similarity=-0.009 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELS 117 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ 117 (265)
..|......-...|+++...-.|++++---....+.|...+......|+.+-|...+..+.+......... +.+..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 35666666677889999999999999887777788899988888888988888888888877655544433 66667
Q ss_pred hhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHhhCCCC----HHHHHHHHHH-HHhhcC
Q 024618 118 DSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE---SFQTALKLKPQD----YSLWNKLGAT-QANSVQ 189 (265)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---~~~~~~~~~~~~----~~~~~~l~~~-~~~~~~ 189 (265)
..|++..|...+++.....|+...+-...+....+.|+.+.+.. .+..... ...+ ...+...+.. +.-.++
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcC
Confidence 77888899999998888778888887777888888888888774 3222222 1122 2223333332 344678
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQG 222 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (265)
.+.|...+.+++...|.+...+..+..+....+
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 888888999999888888777777776666554
No 295
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.43 E-value=0.036 Score=43.53 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=95.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC------------C---HHHHHH
Q 024618 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--------------KPQ------------D---YSLWNK 179 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~------------~---~~~~~~ 179 (265)
+-..++.+|-+.+++..++.++..+|+...|.+.+++++-. ++. | ..+.+.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 44556789999999999999999999999999999998632 111 1 134556
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHhcCCc-chhhH-HHHHHHHHhcCCcHHHHHHHHHHHhcCC-----CCchhHHHHHHHH
Q 024618 180 LGATQANSVQSADAILAYQRALDLKPN-YVRAW-ANMGISYANQGMYEESVRYYVRALAMNP-----KADNAWQYLRISL 252 (265)
Q Consensus 180 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~ 252 (265)
....+.+.|-+..|.++.+-.+.++|. ||-.. +.+-....+.++++-=++.++....... .-|..-+.++.++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 667788899999999999999999998 66544 4444455677788777777776554211 1245667788888
Q ss_pred HHhCCc
Q 024618 253 RYAGRY 258 (265)
Q Consensus 253 ~~~~~~ 258 (265)
..+++.
T Consensus 189 ~~l~~~ 194 (360)
T PF04910_consen 189 FRLEKE 194 (360)
T ss_pred HHhcCc
Confidence 888776
No 296
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.38 E-value=0.00041 Score=32.81 Aligned_cols=31 Identities=39% Similarity=0.796 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
++..+|.++..+|++++|+..++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666665553
No 297
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.35 E-value=0.05 Score=43.06 Aligned_cols=183 Identities=12% Similarity=0.083 Sum_probs=105.9
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh------hhhh-hhhhHHH---HHHHHHHHHhcCCCCCCCc------
Q 024618 49 IAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG------VSHT-NELEQAA---ALKYLYGWLRHHPKYGTIA------ 112 (265)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la------~~~~-~~~~~~~---A~~~~~~~~~~~~~~~~~~------ 112 (265)
....+.++..+|..++.-...++|+.....-.+. .+.. .-..+.. =+..++.+-..+-+.....
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3446677888888888877778887642211111 0000 1111111 1222222222222211111
Q ss_pred hhhhhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH--HHHHHHHh---------hCC---CCHHHH
Q 024618 113 PPELSDSLY-YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAI--ESFQTALK---------LKP---QDYSLW 177 (265)
Q Consensus 113 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~--~~~~~~~~---------~~~---~~~~~~ 177 (265)
+.-+...|. -++|+.+++.+++..|.+.......-.. -...|.+|+ ..+.+.+. +.| .+.+.-
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 555666666 6788999999998888776433222111 111122222 11222221 112 223444
Q ss_pred HHHHH--HHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 178 NKLGA--TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 178 ~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
..++. .++.+|+|.++.-+-.-..++.| .+.++..+|.+.....+|++|..++...
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44544 46789999999999888889999 6899999999999999999999999764
No 298
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.013 Score=47.54 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=78.5
Q ss_pred HHHHHHhcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH-HHhcC
Q 024618 128 LFVEAARMSPEDADVHIV--LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR-ALDLK 204 (265)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~ 204 (265)
.+...+..+|.++..... ++..+...++...+.......+..+|.+..+..+++......|....+...+.. +....
T Consensus 53 a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 53 ALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred HHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 333334455555554332 355556666776777777777777777777777777776666665555555444 56666
Q ss_pred CcchhhHHHH------HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 205 PNYVRAWANM------GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 205 ~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
|.+......+ +.....+|+..++.....++....|.++.....+......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 6665544333 6666667777777777777777777776655555544333
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.0045 Score=51.30 Aligned_cols=194 Identities=14% Similarity=0.083 Sum_probs=115.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh----------hhhhh
Q 024618 16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS----------LGVSH 85 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------la~~~ 85 (265)
.+...-..++|+++ ++.+| ++..|..++......-.++-|...|-+.-.... ...--. .+.+-
T Consensus 672 ~Lve~vgledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~G--ik~vkrl~~i~s~~~q~aei~ 744 (1189)
T KOG2041|consen 672 NLVEAVGLEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAG--IKLVKRLRTIHSKEQQRAEIS 744 (1189)
T ss_pred HHHHHhchHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccc--hhHHHHhhhhhhHHHHhHhHh
Confidence 33344444555443 33344 678888888887777777777777766533211 111122 22333
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
..-|++++|.+.|-.+ +-.+....+....|+|-...++++..-.-+.+ ...++..+|..+.....|++|.++|
T Consensus 745 ~~~g~feeaek~yld~-----drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDA-----DRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hhhcchhHhhhhhhcc-----chhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777665322 11222245556666666665555443221111 1367788888888888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
...-. .-+...+++...++++- +.....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 820 ~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 820 SYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred Hhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 76532 23455666666666653 333344577778888899999999999999888765
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.30 E-value=0.0023 Score=50.62 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=103.0
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
....|+...|-+-+..+++..|.+|......+.+...+|+|+.+...+..+-..-.....+...+-......|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34567777777888888899999999989999999999999999988877666545555566667777888999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
.-.-.+...-.++++...-+.....+|-+++|..++++.+.++|..
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8888887777777777777777778889999999999999988754
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.29 E-value=0.0045 Score=40.99 Aligned_cols=76 Identities=13% Similarity=-0.069 Sum_probs=44.8
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618 148 VLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223 (265)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (265)
..-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+..--.++.|+.-+|+
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3334456666666666665556666666666666666666666666666666655555545444455555555554
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.027 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618 175 SLWNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
.++..+|..+..+..+++|.++|..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 303
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.27 E-value=0.05 Score=41.51 Aligned_cols=147 Identities=20% Similarity=0.165 Sum_probs=102.1
Q ss_pred hhhhHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCh-HHHHhhh
Q 024618 11 LKEGQELFR----KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTN-LEVLLSL 81 (265)
Q Consensus 11 ~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~-~~~~~~l 81 (265)
+..+..+.. ..+..+|...|+.+ ....++.+.+.+|..+.. ..+..+|..+|.++.+..... ..+.+.+
T Consensus 77 ~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l 154 (292)
T COG0790 77 ALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL 154 (292)
T ss_pred HHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 344444443 34578899999854 345678899999999887 559999999999999876544 3457777
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYD 157 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 157 (265)
+.+|..-. ...+... +...|...+.++.... ++.+...+|.+|.. ..++.
T Consensus 155 ~~~~~~g~-~~~~~~~-----------------------~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 155 GLAYLSGL-QALAVAY-----------------------DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHcCh-hhhcccH-----------------------HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHH
Confidence 77776543 1111110 1235666666665544 67888889988755 34889
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618 158 KAIESFQTALKLKPQDYSLWNKLGATQANSV 188 (265)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (265)
+|...|.++.+... ....+.++ ++...|
T Consensus 209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 99999999998765 78888888 666555
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.25 E-value=0.044 Score=40.40 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=112.1
Q ss_pred HcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC-----ChHH-HHhhhhhhhhhh
Q 024618 19 RKGLLSEAVLALEAEVLKNPENSE----GWRLLGIAHAENDDDQQAIAAMMRAHEAEP-----TNLE-VLLSLGVSHTNE 88 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~-~~~~la~~~~~~ 88 (265)
...+.++|+..|+++++..++..+ ++-.+..+.+.++++++-.+.|.+.+..-. +..+ ....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345889999999999999887643 667788899999999999998888775321 1111 111111111112
Q ss_pred hhHHHHHHHHHHHHhc--CCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCCCC------------HHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRH--HPKYGTIA-------PPELSDSLYYADVARLFVEAARMSPED------------ADVHIVLG 147 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~l~ 147 (265)
.+.+--...|+..+.. +.++...| +.++...+.+.+-.+.+++..+....+ .+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 2222222333333221 12222333 788888888887777776665432211 23455555
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC--HHHHH----HHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 148 VLYNLSRQYDKAIESFQTALKLKPQD--YSLWN----KLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.+|..+++-.+-...|++++.+..-- |.+.- .=|..+...|++++|-.-|-++++.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 67778888888888888888764332 22221 2234567788888888777777765
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.22 E-value=0.009 Score=47.47 Aligned_cols=123 Identities=12% Similarity=0.006 Sum_probs=99.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618 16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 95 (265)
.....|+.-.|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-+.....|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567999999999999999999999999999999999999999998887766654444455555667777889999999
Q ss_pred HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCC
Q 024618 96 KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPE 138 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~ 138 (265)
......+...-+++... +......|-++++...+++.+.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 98888887766666665 56666778889999999999888764
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.18 E-value=0.13 Score=44.31 Aligned_cols=197 Identities=11% Similarity=-0.038 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC---------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI 111 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 111 (265)
|......+.......++.+|..++.++...-|. .....-..|.+....|+++.|++..+.++..-|.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 344455667777888999999888887665433 12445556778888999999999999999988876544
Q ss_pred c--------hhhhhhhhchHHHHHHHHHHHhcCCC----C--HHHHHHHHHHHHHccCH--HHHHHHHHHHH----hhCC
Q 024618 112 A--------PPELSDSLYYADVARLFVEAARMSPE----D--ADVHIVLGVLYNLSRQY--DKAIESFQTAL----KLKP 171 (265)
Q Consensus 112 ~--------~~~~~~~~~~~~a~~~~~~~~~~~~~----~--~~~~~~l~~~~~~~~~~--~~A~~~~~~~~----~~~~ 171 (265)
. +....-.|++++|..+...+.+.... . ..+....+.++..+|+. .+....+...- ...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3 77888889999999888888776321 1 22344456777888833 23333333222 2233
Q ss_pred CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCcc--hh-hHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 172 QDYSLWNKLGATQANSVQSADAILAYQRALDL----KPNY--VR-AWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.+.......+.++...-+++.+..-....++. .|.. .. ..+.++.+.+..|+.++|...+......
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33333333444433333366555555555544 2222 22 2347899999999999999999887765
No 307
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.18 E-value=0.035 Score=43.94 Aligned_cols=200 Identities=11% Similarity=-0.060 Sum_probs=133.8
Q ss_pred HHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc------
Q 024618 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM------ 135 (265)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------ 135 (265)
-.+++++...|-.+++|+.........++-+.|+...++++...|.....++..+...++.+....+|+++.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence 45677888888889999999999999999999999999999998885555566665555555555555544321
Q ss_pred ---------CCCCH----H-----------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhhcCc
Q 024618 136 ---------SPEDA----D-----------VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT-QANSVQS 190 (265)
Q Consensus 136 ---------~~~~~----~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 190 (265)
..+++ + ++...-..-.+..-.+.|...|-++-+..-..+.++..-|.+ +...|++
T Consensus 369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~ 448 (660)
T COG5107 369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDR 448 (660)
T ss_pred hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCc
Confidence 00111 1 122222223344446677777777766532334444444433 5567999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhCCcccc
Q 024618 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA--DNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A 261 (265)
.-|-..|+-.+...|+++......-..+...++-+.|...|++++..-... ...|..+..--..-|+...+
T Consensus 449 ~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 449 ATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred chHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 999999999999999887666666677788899999999999888653333 34555555555555665544
No 308
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.16 E-value=0.00094 Score=31.47 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 176 LWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
++..+|.++...+++++|+..++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555543
No 309
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.12 E-value=0.0017 Score=48.31 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=54.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK-LGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
+.++....|+++..|...+......|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++..+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 444444556666666666666666666666666666677777766666665 3334555666666666777777666666
Q ss_pred hhhHHH
Q 024618 208 VRAWAN 213 (265)
Q Consensus 208 ~~~~~~ 213 (265)
|..|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 666654
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.10 E-value=0.074 Score=40.28 Aligned_cols=191 Identities=17% Similarity=0.037 Sum_probs=114.3
Q ss_pred chhhhHHHHHcC-ChHHHHHHHHHHHHh----CC---CC-------hHHHHHHHHHHhhcCcHH---HHHHHHHHHHhcC
Q 024618 10 PLKEGQELFRKG-LLSEAVLALEAEVLK----NP---EN-------SEGWRLLGIAHAENDDDQ---QAIAAMMRAHEAE 71 (265)
Q Consensus 10 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~----~~---~~-------~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~ 71 (265)
.+..|......+ ++++|+..++++.+. .+ .. ..++..++.++...+.++ +|....+.+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 367788889999 999999999999876 21 11 125667888998887755 4556666666667
Q ss_pred CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhh--hhhhhchHHHHHHHHHHHhc--CCCCHHHHH
Q 024618 72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPE--LSDSLYYADVARLFVEAARM--SPEDADVHI 144 (265)
Q Consensus 72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 144 (265)
|+.+..+...-.+....++.+.+.+.+.+++...+-....+ ... .........+...+...+.. .|.... +.
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~ 196 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WL 196 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HH
Confidence 88787775555666668888899999988887654222222 111 11223344555666555543 232221 22
Q ss_pred HHH---HHHHHcc--CHHHH--HHHHHHHHh----h--CCCCH-------HHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 145 VLG---VLYNLSR--QYDKA--IESFQTALK----L--KPQDY-------SLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 145 ~l~---~~~~~~~--~~~~A--~~~~~~~~~----~--~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
... .++...+ +.... ++.+...+. . .|-++ ..+.+.|...++.++|++|+..|+-++
T Consensus 197 e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 197 EKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 2222222 21222 222322222 1 22222 335566888899999999999999765
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.09 E-value=0.03 Score=35.57 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHh-------cCCcc
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQD------------YSLWNKLGATQANSVQSADAILAYQRALD-------LKPNY 207 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~ 207 (265)
|.-.+..|-|++|...+++++.....- .-.+..|+..+..+|+|++++..-++++. ++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 344566788999999999998764332 34566788888999999887776666653 34444
Q ss_pred hh----hHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 208 VR----AWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 208 ~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.. +.+..+..+..+|+.++|+..|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 4467888999999999999999988764
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.07 E-value=0.018 Score=41.49 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=63.8
Q ss_pred HccCHHHHHHHHHHHHhh----C-CC--CHHHHHHHHHHHHhhcCcH-------HHHHHHHHHHhcCCc------chhhH
Q 024618 152 LSRQYDKAIESFQTALKL----K-PQ--DYSLWNKLGATQANSVQSA-------DAILAYQRALDLKPN------YVRAW 211 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~----~-~~--~~~~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~~~------~~~~~ 211 (265)
....+++|++.|.-++-. . +. -+..+..+|.+|...|+.+ .|+..|+++++.... ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345666777776666532 1 11 1456778888888888854 455556666544322 24677
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc-hhHHHHHH
Q 024618 212 ANMGISYANQGMYEESVRYYVRALAMNPKAD-NAWQYLRI 250 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~ 250 (265)
+.+|.+..+.|++++|+.+|.+++.....+. .....++.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 8899999999999999999999987643332 24444443
No 313
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.05 E-value=0.027 Score=40.59 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred hhcCcHHHHHHHHHHHHhc----CCC---hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHH
Q 024618 52 AENDDDQQAIAAMMRAHEA----EPT---NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYAD 124 (265)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (265)
.....+++|++.|.-|+-. .+. -+..+..+|++|...|+.+.....++ .
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~------------------------~ 143 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR------------------------K 143 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH------------------------H
Confidence 3455778888887777643 111 25678889999999998766666654 4
Q ss_pred HHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618 125 VARLFVEAARMSP------EDADVHIVLGVLYNLSRQYDKAIESFQTALKLK 170 (265)
Q Consensus 125 a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (265)
|+..|.++..... +...+.+.+|.+..+.|++++|...|.+++...
T Consensus 144 Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 144 ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4456666665432 224677888888888888888888888888753
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.04 E-value=0.0013 Score=46.70 Aligned_cols=59 Identities=27% Similarity=0.395 Sum_probs=43.2
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
.....++.+.|.+.|.+++...|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556777777777777777777777777777777777777777777777777777765
No 315
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.098 Score=42.35 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhcC---Cc----chhhHHHHHHHHHhcCC-cHHHHHHHHHHHhcCCCC
Q 024618 176 LWNKLGATQANSVQSADAILAYQRALDLK---PN----YVRAWANMGISYANQGM-YEESVRYYVRALAMNPKA 241 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~ 241 (265)
.+..+|.++...|+...|..+|...++.. .. .|.+++.+|..+..+|. ..++..++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 36778999999999999999999887431 11 26789999999999999 999999999999876554
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.01 E-value=0.017 Score=38.31 Aligned_cols=81 Identities=19% Similarity=0.113 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 178 NKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 178 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+..+..+...-.++.|+..+|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33344445588999999999988889999999999999999999999999999999998888878777788888888877
Q ss_pred c
Q 024618 258 Y 258 (265)
Q Consensus 258 ~ 258 (265)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.98 E-value=0.034 Score=36.26 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhc---CcHHHHHHHHHHHh-cCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618 175 SLWNKLGATQANSV---QSADAILAYQRALD-LKPNY-VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 175 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
...++++.++.... +..+.+..++..++ -.|.. -+..+.++..+.+.|+|+.++.+.+..++..|++.++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34455555554432 23445555555554 22222 24455566666666666666666666666666655544
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.97 E-value=0.041 Score=34.98 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCC------------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 024618 51 HAENDDDQQAIAAMMRAHEAEPT------------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSD 118 (265)
Q Consensus 51 ~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 118 (265)
.+..|-|++|...+.++.+.... +..++..|+..+..+|+|++++..-
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA-------------------- 78 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA-------------------- 78 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH--------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH--------------------
Confidence 45667888888888888875322 2457778888999999999998776
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 119 SLYYADVARLFVEAARMSPEDADVH----IVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
+.|+.+|.+--+++.+....| +..+..+...|+.++|+..|+.+-+.
T Consensus 79 ----~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 79 ----DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp ----HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455567777777777765544 56677888899999999999887653
No 319
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.0045 Score=49.58 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=71.7
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHH
Q 024618 152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANS---VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
..+....++..|.++++..|.....+.+.+.++++. |+.-.|+.-...++.++|....+++.|+.++..++++.+|+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 345567788888888888888888888888877764 45667778888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCC
Q 024618 229 RYYVRALAMNPKA 241 (265)
Q Consensus 229 ~~~~~a~~~~~~~ 241 (265)
++...+....|.+
T Consensus 466 ~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 466 SCHWALQMSFPTD 478 (758)
T ss_pred hhHHHHhhcCchh
Confidence 8887777777743
No 320
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.12 Score=40.35 Aligned_cols=176 Identities=13% Similarity=0.226 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCC
Q 024618 58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSP 137 (265)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 137 (265)
+++++.-.+.+..+|+...+|...-.++....... +..| .......++-+.+...+++.+|
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~----------~~~~---------~ek~~~ld~eL~~~~~~L~~np 106 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA----------QLEP---------LEKQALLDEELKYVESALKVNP 106 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh----------cCCH---------HHHHHhhHHHHHHHHHHHHhCc
Confidence 45666777777778877666655433332211100 1111 1122235677788888889999
Q ss_pred CCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc----CcHHHHHHHHHHHhcCCcchhhH
Q 024618 138 EDADVHIVLGVLYNLSR--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSV----QSADAILAYQRALDLKPNYVRAW 211 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~ 211 (265)
+...+|.....++.+.+ ++..=+..++++++.+|.+..+|...=.+..... ...+=+++..+++..++++..+|
T Consensus 107 ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 107 KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHH
Confidence 99999999988888765 4678889999999999998877766555444332 34566788888888888888888
Q ss_pred HHHHHHHHh------cCC------cHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 212 ANMGISYAN------QGM------YEESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 212 ~~l~~~~~~------~g~------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
.....+... .|+ ...-++.-..++-.+|++..+|++.-..+
T Consensus 187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 887766652 231 23445566677777899888887744443
No 321
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.94 E-value=0.0018 Score=46.03 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=54.9
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024618 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY 174 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 174 (265)
......++.+.+.+.+.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778889999999999999999999999999999999999999999999999999874
No 322
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=96.90 E-value=0.11 Score=38.86 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HhhCCCCHHHHHHHHH-HHHhhcCcHHHHHHHHHH
Q 024618 138 EDADVHIVLGVLYNLSRQYDKAIESFQTA----------------LKLKPQDYSLWNKLGA-TQANSVQSADAILAYQRA 200 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------------~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~ 200 (265)
.++..+..+|..+.+.|++.+|..+|-.. .+-.|.....+...+. -|...++...|...+..-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56788888888888888888888766321 1235566666666665 366678888888877666
Q ss_pred Hhc----CCc----------chhhHHH--HHHHHHhcCC---cHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 201 LDL----KPN----------YVRAWAN--MGISYANQGM---YEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 201 ~~~----~~~----------~~~~~~~--l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
++. +|. ....+.. +-..-.+.++ +..=.+.|+..++.+|........+|..|+...
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 554 332 1111111 1111222333 223334444555566777778888999988754
No 323
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.88 E-value=0.17 Score=44.75 Aligned_cols=101 Identities=19% Similarity=0.100 Sum_probs=81.3
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhc----C---cHHHHHHHHHHHHhcCCChHHHHhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAEN----D---DDQQAIAAMMRAHEAEPTNLEVLLS 80 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~~~~~~~~~~~~~~~ 80 (265)
+....++.....|++|+..|+++....|... ++.+..|.....+ | .+++|+..|++... .|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence 3445677888999999999999999988654 5777777776543 2 57777777776543 4666778888
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618 81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
.|.+|.++|++++-++++.-+++..|..+.+.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 99999999999999999999999999988765
No 324
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.87 E-value=0.0034 Score=46.84 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=46.4
Q ss_pred cCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024618 104 HHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIV-LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK 179 (265)
Q Consensus 104 ~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 179 (265)
..|+++..| +......+.+.+--..+.++++.+|.+.+.|.. -+.-+...++++.+...+.+++..+|.+|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 344444444 333344555666666666677777777666665 3444556667777777777777777777666654
Q ss_pred H
Q 024618 180 L 180 (265)
Q Consensus 180 l 180 (265)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.83 E-value=0.012 Score=34.31 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=42.0
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH---HHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL---LGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.+..|..++...+.++|+..++++++..++.++-+.. +..+|...|++.+++.+..+-+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888877766654444 445567777777777766555443
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.82 E-value=0.26 Score=42.01 Aligned_cols=214 Identities=16% Similarity=0.086 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhCCCC----hHHHHHHHHHHh-hcCcHHHHHHHHHHHHhcCCC--hH----HHHhhhhhhhhhhhhH
Q 024618 23 LSEAVLALEAEVLKNPEN----SEGWRLLGIAHA-ENDDDQQAIAAMMRAHEAEPT--NL----EVLLSLGVSHTNELEQ 91 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~ 91 (265)
...|+.+++-+++..+-. ..+.+.+|.+++ ...+++.|..++.+++.+... .. .+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345677888777433222 347788899887 789999999999999887643 22 3455678888888877
Q ss_pred HHHHHHHHHHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcC--CCCHHH----HHHHHHHHHHccCH
Q 024618 92 AAALKYLYGWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMS--PEDADV----HIVLGVLYNLSRQY 156 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~~~~ 156 (265)
. |+..+++.++......... .......+++..|++.++...... +.++.+ ....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 9999999998766633221 222223378999999999988765 344433 23345666778888
Q ss_pred HHHHHHHHHHHhhCC------C----CHHHHHHHHH--HHHhhcCcHHHHHHHHHH---Hhc---CC---c---c-----
Q 024618 157 DKAIESFQTALKLKP------Q----DYSLWNKLGA--TQANSVQSADAILAYQRA---LDL---KP---N---Y----- 207 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~------~----~~~~~~~l~~--~~~~~~~~~~A~~~~~~~---~~~---~~---~---~----- 207 (265)
+++++.++++..... + ...+|..+-. +....|+++.+...+++. +.. .+ . +
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 889988888754311 1 1334444444 344567766665544332 211 11 0 0
Q ss_pred ------------h-------------hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 208 ------------V-------------RAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 208 ------------~-------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
+ -++..-|.+....|..++|.+++.++++.
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~ 330 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ 330 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence 0 12334456666777777888888888763
No 327
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.82 E-value=0.12 Score=38.19 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=122.1
Q ss_pred hcCcHHHHHHHHHHHHhcCCChH----HHHhhhhhhhhhhhhHHHHHHHHHHHHhc-------CCCCCCCc--hhhhhhh
Q 024618 53 ENDDDQQAIAAMMRAHEAEPTNL----EVLLSLGVSHTNELEQAAALKYLYGWLRH-------HPKYGTIA--PPELSDS 119 (265)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~--~~~~~~~ 119 (265)
...+.++|+..|++++++.+... .++-.+..++++++++++-...|.+.+.. +-....+. .......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988753 46667778888888888888777766542 11111000 1111111
Q ss_pred hchHHHHHHHHHHHhc--CCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHhhCCC------------CHHHHHHHH
Q 024618 120 LYYADVARLFVEAARM--SPEDADV----HIVLGVLYNLSRQYDKAIESFQTALKLKPQ------------DYSLWNKLG 181 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~ 181 (265)
.+.+--...|+..+.. +..+... -..+|.+++..++|.+-.+.+.+.-+.... -.+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 2222222223222211 1122222 346889999999888877777665443211 124555556
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCcchhh------HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC-----chh--HHHH
Q 024618 182 ATQANSVQSADAILAYQRALDLKPNYVRA------WANMGISYANQGMYEESVRYYVRALAMNPKA-----DNA--WQYL 248 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~--~~~l 248 (265)
..|-.+++-.+-...|++++.+...-|.. .-.=|..+.+.|++++|-.-|-.+++...+. ... +.-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 67888888888888999998775433222 1223566788899999998888888753322 222 3345
Q ss_pred HHHHHHhC
Q 024618 249 RISLRYAG 256 (265)
Q Consensus 249 ~~~~~~~~ 256 (265)
+..+.+.|
T Consensus 279 ANMLmkS~ 286 (440)
T KOG1464|consen 279 ANMLMKSG 286 (440)
T ss_pred HHHHHHcC
Confidence 66666554
No 328
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.084 Score=36.21 Aligned_cols=157 Identities=8% Similarity=0.020 Sum_probs=103.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHH
Q 024618 84 SHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED--ADVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 161 (265)
-|+..+.-..+-..|..++++ ...+..++|+..|...-+..-.. .-+....+.+..+.|+...|+.
T Consensus 48 ~yw~~s~as~sgd~flaAL~l------------A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~ 115 (221)
T COG4649 48 TYWQTSRASKSGDAFLAALKL------------AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVA 115 (221)
T ss_pred ehhcccccccchHHHHHHHHH------------HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHH
Confidence 344444444555555555543 33445677777777776654333 3456777888999999999999
Q ss_pred HHHHHHhhCCCCHH-----HHHHHHHHHHhhcCcHHHHHHHHHHHh-cCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 162 SFQTALKLKPQDYS-----LWNKLGATQANSVQSADAILAYQRALD-LKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 162 ~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
.|.++-...|. |. +...-+.++...|-|+.-....+..-. .+|--..+.-.||..-++.|++..|..+|.+..
T Consensus 116 aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 116 AFDEIAADTSI-PQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhccCCC-cchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 99998765442 32 344556677888988887766654321 233334566779999999999999999999887
Q ss_pred hcCCCCchhHHHHHHHHHH
Q 024618 236 AMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~~ 254 (265)
. +...+......+.+...
T Consensus 195 ~-Da~aprnirqRAq~mld 212 (221)
T COG4649 195 N-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred c-cccCcHHHHHHHHHHHH
Confidence 6 44556655666655543
No 329
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.81 E-value=0.042 Score=38.40 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc--ch----hh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPN--YV----RA 210 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~ 210 (265)
..++..+|..|.+.|+.++|++.|.++....... .+.+..+..+....+++.....+..++-..-.. +. ..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3678899999999999999999999988754332 466778888889999999999998888665322 22 23
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
...-|..+...++|.+|...|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3456777888999999999988776443
No 330
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.25 Score=41.15 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=78.6
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENS------EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS 84 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 84 (265)
.+.|..+++..+|..+++.|...+..-|.+. .....++.||..+.+.+.|.++++.|-+.+|.++-....+..+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 3567788889999999999999888777653 3566788899999999999999999999999998888888888
Q ss_pred hhhhhhHHHHHHHHHHHHhc
Q 024618 85 HTNELEQAAALKYLYGWLRH 104 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~ 104 (265)
....+..++|+.+..+....
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 88888999999888776654
No 331
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.19 Score=41.86 Aligned_cols=216 Identities=11% Similarity=0.002 Sum_probs=110.7
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHh--------------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLK--------------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 72 (265)
..+|-.+|+.....=+++-|.+.|.++-.. ....|. -..++..+...|.+.+|.+.|.+.=..+.
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enR 663 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENR 663 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhh
Confidence 344556666666666677777666554221 111122 23456666677777777777765311100
Q ss_pred C----hHHHHhhhhhhhhhhhhHHHHHHHHHHHH--hcCCCCCCCchhhhhhhhchHHHHHHH----------HHHHhcC
Q 024618 73 T----NLEVLLSLGVSHTNELEQAAALKYLYGWL--RHHPKYGTIAPPELSDSLYYADVARLF----------VEAARMS 136 (265)
Q Consensus 73 ~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~----------~~~~~~~ 136 (265)
. ...-.+..+.-+...|..++-....++-. ..+.+.+.+.+.++...|+.++|+... +-+-+++
T Consensus 664 AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 664 ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence 0 00112223333444444333333332222 223334444477777788877776543 2223344
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
..+.+.+..++..+.....+.-|.+.|.+.-.. ..+-.++...+++++|...-++.-+.- +.+++-.|+
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaq 812 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQ 812 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHH
Confidence 445555666666666666666666666554221 223445666777877776655432222 234555555
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 024618 217 SYANQGMYEESVRYYVRA 234 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a 234 (265)
.+....++++|.+.|.++
T Consensus 813 wLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhhhhhHHHHHHHHHHh
Confidence 555555555555555443
No 332
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.01 Score=47.66 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN---DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
.|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+++.|+.++...+
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 344444556678899999999999999999888888887764 56777888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
++.+|+.+...+....|.+....
T Consensus 460 r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred hHHHhhhhHHHHhhcCchhhhhh
Confidence 99999999988888888654433
No 333
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.68 E-value=0.085 Score=34.48 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618 140 ADVHIVLGVLYNLSR---QYDKAIESFQTALK-LKPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN 213 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 213 (265)
....++++.++.... +..+.+.+++..++ ..|.. -+..+.++..+.+.++|++++.+.+..++..|++..+...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 566788888887655 45678888998886 44433 4678889999999999999999999999999998776543
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.13 Score=35.36 Aligned_cols=106 Identities=14% Similarity=0.009 Sum_probs=58.8
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhh
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPE--D--ADVHIVLGVLYNLSRQYDKAIESFQTAL-KLKPQDYSLWNKLGATQANS 187 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 187 (265)
+.+....|+...|+..|..+-...|. - ..+...-+.++...|.|++.....+..- ..+|-...+.-.||..-.+.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 34444445555555555554443321 1 1233444566677777777666655432 22344455666777777788
Q ss_pred cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 188 VQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
|++..|.+.|.+... +...|....+.+.+..
T Consensus 181 gd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 181 GDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred cchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 888888888877665 4334444444444443
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.53 E-value=0.028 Score=39.25 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSD 118 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 118 (265)
.++..+|..|.+.|+.++|++.|.++.+..... .+.+..+..+....+++.....+..++-..-.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d-------- 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD-------- 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch--------
Confidence 477889999999999999999999988765433 456777778888888888888877766543221100
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK 170 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 170 (265)
++ ........-|..++..++|.+|...|-.+....
T Consensus 109 ---~~--------------~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 ---WE--------------RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ---HH--------------HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 00 001234445666777888999888887765443
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.42 E-value=0.0076 Score=30.52 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888888764
No 337
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.27 Score=40.42 Aligned_cols=128 Identities=19% Similarity=0.094 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHhhh--hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHH-HHH
Q 024618 55 DDDQQAIAAMMRAHEAEPTNLEVLLSL--GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADV-ARL 128 (265)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a-~~~ 128 (265)
+.-.-++..+...+.++|.++..+... +..+...+....+.-.....+..+|++.... +..+...|....+ ...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 334446666777777777777764433 5556666676666666667777666665544 2222223333333 333
Q ss_pred HHHHHhcCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024618 129 FVEAARMSPEDADVHIVL------GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA 182 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 182 (265)
.+.+....|++......+ +......|+..++.....++....|.++.+...+..
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 333556666665544443 555556666666666666666666666544443333
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.31 E-value=0.23 Score=35.13 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc----chhhHHHHHHHHHhcCCcHHHH
Q 024618 157 DKAIESFQTALKL-KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN----YVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 157 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
+.|...|-++-.. .-++++..+.+|..|. ..+.++++..+.+++++.+. +++++..|+.++.++|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455544443221 1134556666665555 45566677777777666432 3566667777777777776664
No 339
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.24 E-value=0.14 Score=45.95 Aligned_cols=169 Identities=12% Similarity=0.017 Sum_probs=116.6
Q ss_pred HHHHHHHHhhcCcHHHHHH------HHHHH-HhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 44 WRLLGIAHAENDDDQQAIA------AMMRA-HEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~------~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
....|......|.+.+|.+ .+.+. -.+.|.....+..++.++...++.++|+..-.++.-..
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~----------- 1003 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS----------- 1003 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeee-----------
Confidence 3455666666777777776 44422 23467888899999999999999999988776654432
Q ss_pred hhhhchHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhh
Q 024618 117 SDSLYYADVARLFVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--------KPQDYSLWNKLGATQANS 187 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 187 (265)
++.+..+ |+....+.+++...+..++...|...+.++..+ .|.-.....+++.++...
T Consensus 1004 -------------eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1004 -------------ERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred -------------chhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 2333332 344566777777777778888888888887764 344455667788888888
Q ss_pred cCcHHHHHHHHHHHhcCCc--------chhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 188 VQSADAILAYQRALDLKPN--------YVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
++++.|+++.+.|...... ....+..++..+..++++..|+...+....
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 8999999999988875322 234555677777777777777776665544
No 340
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.21 E-value=0.067 Score=47.80 Aligned_cols=171 Identities=20% Similarity=0.146 Sum_probs=120.3
Q ss_pred chhhhHHHHHcCChHHHHH------HHHHH-HHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCCh
Q 024618 10 PLKEGQELFRKGLLSEAVL------ALEAE-VLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTN 74 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 74 (265)
.+..|......|.+.+|.. ++... -...|+....+..++.++...|++++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4677888888888888877 45432 2345778889999999999999999999988877643 2344
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 024618 75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR 154 (265)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (265)
...+..++......++...|+..+.++.....-. .-...|.-..+..+++.++...+
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls-----------------------~ge~hP~~a~~~~nle~l~~~v~ 1071 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS-----------------------SGEDHPPTALSFINLELLLLGVE 1071 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccc-----------------------cCCCCCchhhhhhHHHHHHhhHH
Confidence 5667777777776777767776666555431100 00124555667778888888889
Q ss_pred CHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 155 QYDKAIESFQTALKLKP--------QDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
+++.|+.+.+.+...+. .....+..++..+..++++..|+...+....+
T Consensus 1072 e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 EADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99999999999987532 22455677778888888888777766655543
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.17 E-value=0.013 Score=29.57 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.++.++|.++..+|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777888888888888887777754
No 342
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.64 Score=38.88 Aligned_cols=95 Identities=16% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
++.+-|.-+++..+|..+++.|...+...|.+ ......++.||....+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34445566667777777777777777665544 344566777777777777777777777777777776666666
Q ss_pred HHHHhcCCcHHHHHHHHHHHh
Q 024618 216 ISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.+....|.-++|+....+...
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHh
Confidence 667777777777777666554
No 343
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.077 Score=39.24 Aligned_cols=69 Identities=23% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 178 NKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 178 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
.++=..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++..|+++.+-.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 334446677788888888888888888888888888888888888888888888888888888766543
No 344
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.47 Score=37.29 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----C-CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc----CCcchh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLK-----P-QDYSLWNKLGATQANSVQSADAILAYQRALDL----KPNYVR 209 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~ 209 (265)
...|+.+..++...|+...-...+...+... . ......+.+-..|...+.|+.|-....+..-- +...+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 3567777777888888666666665554431 1 11344556667788888888888877765411 112345
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
..+.+|.+..-+++|..|.+++-+|+...|.+.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 667789999999999999999999999998753
No 345
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.41 Score=38.97 Aligned_cols=81 Identities=9% Similarity=-0.078 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVSHTNELEQAAALKYLY 99 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~ 99 (265)
+...+.+.......|.++.-....+..+...|+.+.|+..++..++ +.- .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555667788877777788888888888888888888776 222 3356677888888888888888887
Q ss_pred HHHhcCC
Q 024618 100 GWLRHHP 106 (265)
Q Consensus 100 ~~~~~~~ 106 (265)
...+.+.
T Consensus 328 ~L~desd 334 (546)
T KOG3783|consen 328 LLRDESD 334 (546)
T ss_pred HHHhhhh
Confidence 7665543
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.94 E-value=0.072 Score=41.80 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=71.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhC--------CCCh---H-------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKN--------PENS---E-------GWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~---~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 72 (265)
++.|...+++++|..|..-|..+++.. |..+ + +--.+..||+.+++.+-|+....+.+-++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 345777788888888888787777642 1111 1 223588999999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618 73 TNLEVLLSLGVSHTNELEQAAALKYLYGW 101 (265)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (265)
..+.-+...|.++..+.+|.+|...+..+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987765443
No 347
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.12 Score=38.25 Aligned_cols=73 Identities=16% Similarity=-0.009 Sum_probs=64.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.+-...+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3444567788999999999999999999999999999999999999999999999999999999876654433
No 348
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.85 E-value=0.085 Score=32.52 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618 16 ELFRKGLLSEAVLALEAEVLKNPEN---------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP 72 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 72 (265)
...+.|+|.+|++.+.+.++..... ..+...+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3467788888888777776643221 23556677788888888888888888877643
No 349
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.78 E-value=0.049 Score=26.64 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHH--HHHhcCC
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMM--RAHEAEP 72 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~ 72 (265)
+.++.+|..+..+|++++|+..++ -+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 345556666666666666666633 4444444
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.78 E-value=0.85 Score=37.12 Aligned_cols=84 Identities=15% Similarity=-0.034 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
.+++..|..+|...+..|+++-|..+|+++- -+..+..+|...|+.+.-.+..+.+......+ ..-.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~ 410 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQ 410 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHH
Confidence 3457789999999999999999998888753 23445566667777655555554444332221 1123
Q ss_pred HHHhcCCcHHHHHHHHH
Q 024618 217 SYANQGMYEESVRYYVR 233 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~ 233 (265)
+++.+|+.++.++.+.+
T Consensus 411 ~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 AALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 34445666666655544
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.77 E-value=0.038 Score=27.01 Aligned_cols=30 Identities=17% Similarity=0.466 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCcHHHHHH--HHHHHhcCC
Q 024618 210 AWANMGISYANQGMYEESVRY--YVRALAMNP 239 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~--~~~a~~~~~ 239 (265)
.++.+|-.+..+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445556666666666666666 334444444
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.74 E-value=0.37 Score=39.14 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (265)
++...+.+ ..+.|+.+.|.+..++ .+++..|..+|.....+|+++-|.++|+++- -+..+..+|
T Consensus 320 D~~~rFeL---Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy 383 (443)
T PF04053_consen 320 DPDHRFEL---ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLY 383 (443)
T ss_dssp -HHHHHHH---HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred ChHHHhHH---HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHH
Confidence 35544444 4678999888776543 3578899999999999999999999999753 233455556
Q ss_pred HhcCCcHHHHHHHHHHH
Q 024618 219 ANQGMYEESVRYYVRAL 235 (265)
Q Consensus 219 ~~~g~~~~A~~~~~~a~ 235 (265)
.-.|+.+.=.+..+.+.
T Consensus 384 ~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHCT-HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 66666544444444443
No 353
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.66 Score=35.62 Aligned_cols=230 Identities=17% Similarity=0.156 Sum_probs=138.7
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHh--CCCC--------hHHHHHHHHHHhhcCcHHHHHHHHH--------------
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLK--NPEN--------SEGWRLLGIAHAENDDDQQAIAAMM-------------- 65 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~-------------- 65 (265)
.+..++......+.++++..+..++.. .|.+ ......+|..+...|+..+-.....
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 367778888888899999999999874 2222 2366788999999988765333322
Q ss_pred -----HHHhcCCC---h------------------------HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCC
Q 024618 66 -----RAHEAEPT---N------------------------LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK--YGTI 111 (265)
Q Consensus 66 -----~~~~~~~~---~------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 111 (265)
..++..+. . ...-..+...|...++|.+|+......+.--.+ +...
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 22222111 0 012344667788888888888877666542111 1111
Q ss_pred c-------hhhhhhhhchHHHHHHHHHHHhc-----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CCH
Q 024618 112 A-------PPELSDSLYYADVARLFVEAARM-----SPED--ADVHIVLGVLYNLSRQYDKAIESFQTALKLKP---QDY 174 (265)
Q Consensus 112 ~-------~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 174 (265)
+ ...+....+..+|...+..+-.. .|-. ..+-..-|.++....+|..|..+|-++++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 1 56667777777777666555432 1111 12223335666677889999999988887422 122
Q ss_pred HH---HHHHHHHHHhhcCcHH--HHHHHHHHHhcCCcchhhHHHHHHHHHh--cCCcHHHHHHHHHHHhcCC
Q 024618 175 SL---WNKLGATQANSVQSAD--AILAYQRALDLKPNYVRAWANMGISYAN--QGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 175 ~~---~~~l~~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~ 239 (265)
.+ +-.+-.+-...+..++ ++-.-+.+++....+..+....+.++.. +.+|+.|+..|+.-+..+|
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 33 2233333344455554 3333445566666667888888887764 4578888888888777655
No 354
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.70 E-value=0.16 Score=44.92 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhh----c---CcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANS----V---QSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
..++...+.|+.|+..|+++....|.. .++.+..|.....+ | .+++|+.-|++.- -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 456778889999999999999988865 46778888776643 2 4677777777643 35566677888899
Q ss_pred HHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 217 SYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
+|.++|++++-++++.-+++..|++|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999999999999998754
No 355
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=1 Score=37.25 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=95.5
Q ss_pred cCcHHHHHHHHHHHHhc------------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh-----cCCCCCCCchhhh
Q 024618 54 NDDDQQAIAAMMRAHEA------------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR-----HHPKYGTIAPPEL 116 (265)
Q Consensus 54 ~~~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~ 116 (265)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+-|....++++= ..|......+.+-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877764 344568889999999999998888877766652 1222111111000
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-hhcCcH
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADV---HIVLGVLYNLSRQYDKAIESFQTALKLKPQ-DYSLWNKLGATQA-NSVQSA 191 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~ 191 (265)
+.- ..|.+-.. .+..-..+.+.|-+..|.++++-+++++|. +|.....+...|. +..+|.
T Consensus 331 L~y---------------~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYq 395 (665)
T KOG2422|consen 331 LPY---------------IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQ 395 (665)
T ss_pred Ccc---------------cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHH
Confidence 000 01222222 222334455677788888888888888887 6655554444433 445555
Q ss_pred HHHHHHHHHHh-----cCCcchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcCC
Q 024618 192 DAILAYQRALD-----LKPNYVRAWANMGISYANQGM---YEESVRYYVRALAMNP 239 (265)
Q Consensus 192 ~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 239 (265)
=-++.++..-. .-|+. ..-..++..|..... -+.|...+.+|+.+.|
T Consensus 396 wiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 396 WIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 55555554422 12332 122234555554444 4567777777777766
No 356
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.61 E-value=0.13 Score=40.42 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
-..+..||..+++.+-|+....+.+..+|....-+...+.++..+.+|.+|-..+.-+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888888888777777888888888888877665544
No 357
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.57 E-value=0.075 Score=32.77 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred HHccCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 151 NLSRQYDKAIESFQTALKLKPQD---------YSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.+.|++.+|++.+.+.+...... ..+...+|.++...|++++|+..+++++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677777777777666542211 233455555566666666666666666554
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.56 E-value=0.23 Score=41.47 Aligned_cols=230 Identities=15% Similarity=0.059 Sum_probs=116.6
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------------CCChHHHHh
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------------EPTNLEVLL 79 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~ 79 (265)
-..++..|.+++|...---.+ -..-|..++......=+++-|.+.|.++-.+ ....|. -.
T Consensus 563 m~q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~i 636 (1081)
T KOG1538|consen 563 MYQYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DL 636 (1081)
T ss_pred chhhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HH
Confidence 345677787777654321111 1123666676666666777777777766432 111122 24
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH------HhcCCCCCCCc-hhhhhhhhchHHHHHHHHHHHh--cCCCCHHHHHHHHHHH
Q 024618 80 SLGVSHTNELEQAAALKYLYGW------LRHHPKYGTIA-PPELSDSLYYADVARLFVEAAR--MSPEDADVHIVLGVLY 150 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~ 150 (265)
.+|.++...|++.+|.+.|.+. ++...+...+- ++-++..|..++-..+.++-.. .+-+.+. .-+.++
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmL 713 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEML 713 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHh
Confidence 4667777788888888877542 11111100000 2222222222222222222111 1111111 235566
Q ss_pred HHccCHHHHHHHHH----------HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618 151 NLSRQYDKAIESFQ----------TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220 (265)
Q Consensus 151 ~~~~~~~~A~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (265)
...|+.++|+...- -+-+++....+.+..++..+.....+.-|.+.|.+.=. ...+.+.+..
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve 785 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVE 785 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheee
Confidence 77777777765432 12223334445555566666666666666666665321 2235566777
Q ss_pred cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 221 QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.+++.+|....++.-+.-| +++.-.|+-+....++++|.+
T Consensus 786 ~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred cccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHH
Confidence 8899999887766544433 344455555555555555543
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.55 E-value=1.1 Score=36.67 Aligned_cols=75 Identities=13% Similarity=0.007 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 26 AVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 26 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
...++.+++... ++..+++.++.+|... ..++-...+++.++.+-++...-..++..|.. ++...+..+|.+++.
T Consensus 85 veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 85 VEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 334445554433 3455666777777666 44555666777777766666666666665554 666666667766654
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.49 E-value=0.024 Score=25.36 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhcCCcHHHHHHH
Q 024618 210 AWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 361
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.47 E-value=0.16 Score=38.08 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
..++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777777777777777777776654
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.85 Score=34.25 Aligned_cols=205 Identities=12% Similarity=0.080 Sum_probs=123.3
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCC--------CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNP--------ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLL 79 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 79 (265)
+..+..|+...+.+++++|+..|.+++.... +.......++.+|...|++..-.......- +++.
T Consensus 4 ~~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~ 76 (421)
T COG5159 4 KSSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAME 76 (421)
T ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHH
Confidence 3448889999999999999999999987632 123367788999999998876444433221 1111
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc
Q 024618 80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLS 153 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 153 (265)
..+ -.+..+..+..++..|..+..+ +.-+..+...++..... ...-..+..++++.
T Consensus 77 ~ft--------k~k~~KiirtLiekf~~~~dsl----------~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~ 138 (421)
T COG5159 77 DFT--------KPKITKIIRTLIEKFPYSSDSL----------EDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKT 138 (421)
T ss_pred Hhc--------chhHHHHHHHHHHhcCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 0112233344444444433322 22222222222221111 12334567788899
Q ss_pred cCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCcch--hhHHHHHHHHHh
Q 024618 154 RQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILAYQRALDL-----KPNYV--RAWANMGISYAN 220 (265)
Q Consensus 154 ~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--~~~~~l~~~~~~ 220 (265)
|+|.+|+......+.. .|+-..++..-..+|....+..++...+..+-.. .|... ..-..-|..+..
T Consensus 139 ~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd 218 (421)
T COG5159 139 GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD 218 (421)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec
Confidence 9999999888776542 2344567777788888888888887777665443 23222 222334556666
Q ss_pred cCCcHHHHHHHHHHHhc
Q 024618 221 QGMYEESVRYYVRALAM 237 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~ 237 (265)
-.+|..|..+|-.+++-
T Consensus 219 d~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 219 DRDYKTASSYFIEALEG 235 (421)
T ss_pred cccchhHHHHHHHHHhc
Confidence 77888888888888764
No 363
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.28 E-value=0.1 Score=39.41 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220 (265)
Q Consensus 159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (265)
|..+|.+|..+.|.+...++.+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888886655556777777777766
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.18 E-value=0.039 Score=24.66 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHH
Q 024618 43 GWRLLGIAHAENDDDQQAIAAM 64 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~ 64 (265)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 365
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.01 E-value=0.062 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777765
No 366
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.92 E-value=2.2 Score=36.71 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=19.7
Q ss_pred CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
|.+....+..+......|+.++|.....++..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55566666666666677776666655555443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.89 E-value=0.4 Score=28.12 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHhhcCcHHHHHH
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLG---ATQANSVQSADAILA 196 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~ 196 (265)
+..++.++|+..++++++..++.+.-+..+| .++...|++.+++.+
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444433333322 234444444444443
No 368
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=1.5 Score=34.61 Aligned_cols=100 Identities=18% Similarity=0.354 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC--cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC----CcHHHH
Q 024618 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ--SADAILAYQRALDLKPNYVRAWANMGISYANQG----MYEESV 228 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~ 228 (265)
-.++-+.+...+++.+|++..+|+....++.+.+. +..=++.++++++.+|.+..+|...=.+..... ...+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 46677888899999999999999999999987764 577889999999999999888866544444332 356778
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 229 RYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
++..+++..++.+-.+|.+...++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHH
Confidence 89999999999999999887777653
No 369
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.83 E-value=0.19 Score=38.05 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618 125 VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186 (265)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (265)
|..+|.++..+.|++...+..+|.+....|+.-.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997655567888888888877
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.65 E-value=1.4 Score=33.24 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
+..=+...+++++. ....++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444444432 3356788889999999999999999999999999999999999999999999999999999886
Q ss_pred h
Q 024618 236 A 236 (265)
Q Consensus 236 ~ 236 (265)
+
T Consensus 215 ~ 215 (280)
T COG3629 215 K 215 (280)
T ss_pred H
Confidence 6
No 371
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.56 E-value=0.089 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
+++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777654
No 372
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.41 E-value=0.28 Score=36.74 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 176 LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
.+...+..|...|.+.+|++..++++..+|-+...+..+-.++..+|+--.+++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445566677777777777777777777777777777777777777766666666654
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.27 E-value=5.9 Score=38.85 Aligned_cols=53 Identities=11% Similarity=-0.046 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
.+.|...|++....|+++.|..+.-.|.+.. -+.+....|..+...|+...|+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 3455555555555555555555555555443 2344445555555555544443
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.71 E-value=0.46 Score=35.66 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
..+...+..|...|.+.+|+.+.+++++++|-+...+..+..++..+|+--.+++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 3445566777788888888888888888888888888888888888887655544
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.69 E-value=0.3 Score=22.65 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 024618 21 GLLSEAVLALEAEVLKNPENSEGWRLLGI 49 (265)
Q Consensus 21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 49 (265)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666655443
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.68 E-value=0.97 Score=32.56 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=55.4
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL 75 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 75 (265)
...+++.+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-.+.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45678889999999999999999999999888888999999999999999999999988763
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.66 E-value=0.29 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH
Q 024618 156 YDKAIESFQTALKLKPQDYSLWNKL 180 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~l 180 (265)
.+.+...|++++...|.++..|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3444444444444444444444433
No 378
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=2.5 Score=31.91 Aligned_cols=126 Identities=12% Similarity=0.022 Sum_probs=78.8
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCC-C-----ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNP-E-----NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVL 78 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~ 78 (265)
|..+..---...-++-++.+++.++... + -.+++.++|..|.+.++.+.+.+...+.++..-.. .-.-
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k 158 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK 158 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence 3444444344445566666655554322 2 24588888888988888888888887776643221 2244
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------hhhhhhhhchHHHHHHHHHHHhcC
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------PPELSDSLYYADVARLFVEAARMS 136 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~ 136 (265)
..+|.+|..+.-.++.++.....++...+...-. |...+...++.+|..++...+...
T Consensus 159 iRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 159 IRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 5667777777777777777777777665543221 556666677777777777666544
No 379
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.40 E-value=2 Score=30.54 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=52.9
Q ss_pred hhcCcHHHHHHHHHHHhcC-CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHhCCccc
Q 024618 186 NSVQSADAILAYQRALDLK-PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK----ADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 186 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~ 260 (265)
.+..-++|.+.|-++-... -++++..+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++.++|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3334567777776553321 135677777877776 55678889999888887544 36788888999999888887
Q ss_pred c
Q 024618 261 R 261 (265)
Q Consensus 261 A 261 (265)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 6
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.23 E-value=3.1 Score=32.15 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=36.0
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.-+...+..+..+-|+.-..+++++|+...++..++.- ...-..+|...++++++.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 34445566667777777777888888877777776653 223355666666666653
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.20 E-value=0.24 Score=25.49 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=17.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVL 35 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~ 35 (265)
+.+|..|+..|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777777777777664
No 382
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.89 E-value=3.5 Score=31.88 Aligned_cols=183 Identities=16% Similarity=0.041 Sum_probs=121.7
Q ss_pred cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhchHHHHHHHHH
Q 024618 56 DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELSDSLYYADVARLFVE 131 (265)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~ 131 (265)
--++|+..-.-...+-|..|+++-.++.+.+...+. .-..+++-..+. -......+-.+++...+.+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~---------~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRR---------PARFDADGEPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh---------hhccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence 356888888888888999999888777666543221 111222211111 3344555667888888988
Q ss_pred HHhcC-CCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--
Q 024618 132 AARMS-PEDADVHIVLGVLYNL-----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL-- 203 (265)
Q Consensus 132 ~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 203 (265)
++... |.-....-.++.++.. .-+|..-..+|.-.....|+ |.+-.+.+....+..-...++...+-....
T Consensus 282 A~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~ 360 (415)
T COG4941 282 ALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPR 360 (415)
T ss_pred HHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccc
Confidence 88764 3333344444444433 34677777777777777665 666677777777777788888877766543
Q ss_pred CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618 204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248 (265)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 248 (265)
-......+...|..+.++|+.++|...|++++.+.++..+..+..
T Consensus 361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 123345666789999999999999999999999988876554433
No 383
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.2 Score=38.44 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCC-------------------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKP-------------------QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
+.-....++++.|..-+.+++..-. .-.....+++.+-.+.+.+..|+.....++..+++.
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Confidence 3445566667666666666654211 112345567778888889999888888888888888
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
..+++..+..+....++++|++.++.+....|++......+..+-.
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 8999999999999999999999999999999998766555544433
No 384
>PF12854 PPR_1: PPR repeat
Probab=92.78 E-value=0.39 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
...|..+...+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 66777888888888888888888775
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.62 E-value=0.32 Score=38.68 Aligned_cols=61 Identities=20% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALK--------LKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
....+.+++.-+|||..|++.++-.-- ..+-...+++.+|-+|+.+++|.+|++.|..++.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788889999999988765311 1122356788899999999999999999998774
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.42 E-value=0.4 Score=24.68 Aligned_cols=26 Identities=23% Similarity=-0.001 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 45 RLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
+.+|.+|...|+.+.|.+.++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56788888888888888888888853
No 387
>PF12854 PPR_1: PPR repeat
Probab=92.32 E-value=0.46 Score=22.77 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
...|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34555555556666666666555543
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.31 E-value=0.48 Score=31.67 Aligned_cols=53 Identities=17% Similarity=-0.070 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHH
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQA 92 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 92 (265)
..+.....+...+..|++.-|.++.+.++..+|++..+....+.++..+|.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34556666677777788888888888888888888777777777777776543
No 389
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=6 Score=34.60 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHhhcCcHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 181 GATQANSVQSADAILAYQRALDLKPNY-VRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
-.++...++|++|++++.. +.|+. .......|..+... .+++-...+-+.+.
T Consensus 497 ~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEH-DPEETMKILIELIT 549 (933)
T ss_pred HHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHh
Confidence 3456677888888888774 33333 24455567766654 34555555544443
No 390
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.00 E-value=7.9 Score=33.85 Aligned_cols=206 Identities=11% Similarity=-0.007 Sum_probs=115.7
Q ss_pred HHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh-hhhhHHHHHHHHHHHHhcCCCCCC
Q 024618 32 AEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT-NELEQAAALKYLYGWLRHHPKYGT 110 (265)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~ 110 (265)
+.+...|.-...|..+-......|+.-.-...+++++.-.+.+...|...+...- .++-.+.+...+.+++...|-...
T Consensus 303 ~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd 382 (881)
T KOG0128|consen 303 RLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD 382 (881)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH
Confidence 3334444445566677777788898888888889998888888888877765443 233334444555556666665555
Q ss_pred CchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------ccCHHHHHHHHHHHHhh-CCCCHH
Q 024618 111 IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL--------------SRQYDKAIESFQTALKL-KPQDYS 175 (265)
Q Consensus 111 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~~~~~-~~~~~~ 175 (265)
.+...+....+..+-...+...+..+-+....+......+.+ ...+..|...|...... ......
T Consensus 383 L~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~ 462 (881)
T KOG0128|consen 383 LWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTE 462 (881)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 553333333333222222222222221111111111111111 12233444444443332 112234
Q ss_pred HHHHHHHHHH-hhcCcHHHHHHHHHHHhcCCcchh-hHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 176 LWNKLGATQA-NSVQSADAILAYQRALDLKPNYVR-AWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 176 ~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.+...|.+.. .+++.+.+...++..+........ .|+.....-...|+...+...+++++..
T Consensus 463 ~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 463 VLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 4555555544 457788888888877766555544 7777777888889999999988888764
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=6.8 Score=32.74 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=37.8
Q ss_pred cCChHHHHHHHHHHHHh------------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 20 KGLLSEAVLALEAEVLK------------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
...|++|...|.-++.. .|.+.+.+..++.+...+|+.+-|.....+++=
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34567777777666543 366778999999999999999888777777753
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.79 E-value=5.7 Score=31.80 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=41.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHH--HHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSE--GWRL--LGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
...+..++..++|..|..++..+...-|.... .+.. .|..++..-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677888888888888888888775343333 2223 344567778888888888887664
No 393
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.77 E-value=5 Score=31.08 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=101.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHH
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADV 125 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 125 (265)
.+-...++..+..+-++....+++++|....++..++.- ...-..+|.+.++++++........ .+.....|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~-sqq~qh~~~~--- 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQ-SQQCQHQSPQ--- 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhh-HHHHhhhccc---
Confidence 344455666677788888899999999999998888753 2334566777777777643221100 0000000110
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 126 ARLFVEAARMSPE-DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD--YSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 126 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
.+...+.+.+ ...+...++.+..++|+..+|++.++...+..|-. ..++-++...+....-|.+....+-+--+
T Consensus 263 ---~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 263 ---HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred ---hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111111111 12345678889999999999999999988776632 12334444444444433332222222111
Q ss_pred c-CCcchhhHHHHH-------------HHHHhcCC---cHHHHHHHHHHHhcCCCCchhH
Q 024618 203 L-KPNYVRAWANMG-------------ISYANQGM---YEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 203 ~-~~~~~~~~~~l~-------------~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
+ -|..+...+.-+ ..-.+.|- -..|++...++++.+|.-+..+
T Consensus 340 islPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 340 ISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 1 122221111111 11112221 2358888999999999766543
No 394
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.36 E-value=9.4 Score=33.42 Aligned_cols=147 Identities=16% Similarity=0.020 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh---hhhhHHHHHHHHH
Q 024618 23 LSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT---NELEQAAALKYLY 99 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~ 99 (265)
-+.=+.-++.-+..++.+......|..++...|++++-...-..+.++.|..+..|.....-.. ..++..++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3344445555555666666666677777777777777666666666677777666655443322 2245566666666
Q ss_pred HHHhcCCCCCCCc---------hhhhhhhhchHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 100 GWLRHHPKYGTIA---------PPELSDSLYYADVARLFVEAARMSPE-------DADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 100 ~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
+++......+.+. +......++++.....|.+++..-.. ....+...-..+...-..++-+.++
T Consensus 175 kal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~ 254 (881)
T KOG0128|consen 175 KALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF 254 (881)
T ss_pred HHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6665433222111 22234445566666666666653211 1223333334444444445555555
Q ss_pred HHHHhh
Q 024618 164 QTALKL 169 (265)
Q Consensus 164 ~~~~~~ 169 (265)
...+..
T Consensus 255 ~~el~~ 260 (881)
T KOG0128|consen 255 VRELKQ 260 (881)
T ss_pred HHHHhc
Confidence 555543
No 395
>PF13041 PPR_2: PPR repeat family
Probab=91.30 E-value=1.2 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
..|..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444455555555555555555555544
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.20 E-value=4.9 Score=29.94 Aligned_cols=59 Identities=8% Similarity=-0.096 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
.+...+|..|...|++++|+++|+.+....... ..+...+..|+...|+.+..+...-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556666677777777777777665432211 23445566666666666665554433
No 397
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.72 E-value=3.5 Score=27.41 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 55 DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
+.....+.+++.++..++.++..+..+..+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 44455555555555544444444444444443
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.58 E-value=3.5 Score=30.73 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcC
Q 024618 122 YADVARLFVEAARMSPE------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQ 189 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 189 (265)
....++++.++...... ...+...+|..|+..|++++|..+|+.+....... ..+...+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 33455666666654321 13466788999999999999999999997654432 3567778888999999
Q ss_pred cHHHHHHHHHHH
Q 024618 190 SADAILAYQRAL 201 (265)
Q Consensus 190 ~~~A~~~~~~~~ 201 (265)
.+..+...-+.+
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 988877665543
No 399
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.53 E-value=0.72 Score=36.76 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHh--------cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHE--------AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRH 104 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 104 (265)
+...+.+++.-+|||..|++.++..-- ..+-...+++..|-+|+.+++|.+|++.|..++-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999998765411 12234568899999999999999999999988753
No 400
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=6.2 Score=29.74 Aligned_cols=170 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC
Q 024618 59 QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE 138 (265)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 138 (265)
.|++.-...+..+|..-.+|...-.+.....-..+-...+ ++.-+..+..+++.+|.
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~-----------------------ldneld~~~~~lk~~PK 106 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHL-----------------------LDNELDFLDEALKDNPK 106 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhh-----------------------hhcHHHHHHHHHhcCCc
Q ss_pred CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 139 DADVHIVLGVLYNLS--RQYDKAIESFQTALKLKPQDYSLWNKLGATQ------ANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
+..+|...-.++... .++..-....++.+..++.+...|...-.+. ..-..+..-.++-..++..++.+..+
T Consensus 107 ~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~Sa 186 (328)
T COG5536 107 NYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSA 186 (328)
T ss_pred hhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHH
Q ss_pred HHHH---HHHHHhcCC------cHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618 211 WANM---GISYANQGM------YEESVRYYVRALAMNPKADNAWQYLRIS 251 (265)
Q Consensus 211 ~~~l---~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 251 (265)
|... -...+..|+ +++-+++...++-.+|++..+|..+..+
T Consensus 187 W~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 187 WHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.36 E-value=6.2 Score=29.69 Aligned_cols=192 Identities=16% Similarity=0.060 Sum_probs=97.2
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHh-----CCCChHHHHHHHHHHhhcCcHH-HHHHHHHHHHhcC------CChHHHHhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLK-----NPENSEGWRLLGIAHAENDDDQ-QAIAAMMRAHEAE------PTNLEVLLS 80 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~------~~~~~~~~~ 80 (265)
-+..+.+.|++..|.++..-.++. .|.+....-.++.+....+.-+ +-..+.+++++-. -.++..+..
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence 356666777777766665544432 1333444455555555443222 2333444444432 246889999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHH----HHHHHHhcCCCCHHHHHHHHH-HHHHccC
Q 024618 81 LGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVAR----LFVEAARMSPEDADVHIVLGV-LYNLSRQ 155 (265)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 155 (265)
+|..+.+.|++.+|..+|-.. ...++.. ...-..+..|.....+...+. .|...++
T Consensus 96 ~a~~~~~e~~~~~A~~Hfl~~-------------------~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 96 LAEKLWKEGNYYEAERHFLLG-------------------TDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHTS--------------------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred HHHHHHhhccHHHHHHHHHhc-------------------CChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 999999999999999877322 1122221 222334556777777776664 4677899
Q ss_pred HHHHHHHHHHHHhh----CCC----------CHHHHHHHHH--HHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 156 YDKAIESFQTALKL----KPQ----------DYSLWNKLGA--TQANSVQ---SADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 156 ~~~A~~~~~~~~~~----~~~----------~~~~~~~l~~--~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
...|...+....+. .|+ ....++.+.. .-...++ +..-.+.|+..++.+|.....+..+|.
T Consensus 157 ~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~ 236 (260)
T PF04190_consen 157 LRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQ 236 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 99999887776655 332 2222222211 1222232 222333444445555666677778888
Q ss_pred HHHhcCC
Q 024618 217 SYANQGM 223 (265)
Q Consensus 217 ~~~~~g~ 223 (265)
.|+....
T Consensus 237 ~yFgi~~ 243 (260)
T PF04190_consen 237 LYFGIQP 243 (260)
T ss_dssp HHH---S
T ss_pred HHCCCCC
Confidence 8887543
No 402
>PF13041 PPR_2: PPR repeat family
Probab=90.36 E-value=1.6 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555555666666666666655543
No 403
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.32 E-value=8.6 Score=31.25 Aligned_cols=180 Identities=13% Similarity=0.083 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhch
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYY 122 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (265)
....+|..++..++|+-|...|+.+.+-..++ .+|..+|-++...+ +..+.. +.........-.-..-+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~a-----lsl~~~-----~~~~~~k~~~~~~~~~l 278 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAA-----LSLLMQ-----GQSISAKIRKDEIEPYL 278 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHH-----HHHHhc-----CCCCccccccccHHHHH
Confidence 34558999999999999999999887744322 33333332222111 111110 00000000000001113
Q ss_pred HHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CC--C---CHHHHHHHHHHH--HhhcC
Q 024618 123 ADVARLFVEAA----RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--KP--Q---DYSLWNKLGATQ--ANSVQ 189 (265)
Q Consensus 123 ~~a~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~---~~~~~~~l~~~~--~~~~~ 189 (265)
+.|...|.+.- .....-.......+.++...|.+.+|...+-+.... .. . ..-.+-..|.++ .....
T Consensus 279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~ 358 (414)
T PF12739_consen 279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR 358 (414)
T ss_pred HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC
Confidence 44555555521 111123355666677778888887777766665544 21 1 223334444444 11100
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.......++ ..+.-+..-|.-|.+.|+...|..+|.+++.....
T Consensus 359 ~~~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 359 PSPGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred CCccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 000000000 01112233567788999999999999999887553
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.29 E-value=3.5 Score=34.59 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=17.2
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
+..-|..||......+++..|.+++.++..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 344455566666666666666666665533
No 405
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=89.74 E-value=4.1 Score=32.41 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=40.9
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
....-+|+.+++.++..+|.+......+..+|...|-.+.|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345667888889999999999999999999999999999999988654
No 406
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=89.72 E-value=0.74 Score=20.97 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 211 WANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
|..+-..|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34455555556666666666555443
No 407
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=8.6 Score=29.94 Aligned_cols=161 Identities=14% Similarity=0.015 Sum_probs=107.6
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhc----C--CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC------CCCCc-
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEA----E--PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK------YGTIA- 112 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~- 112 (265)
.+...|+..++|.+|+......+.- + +.-.+++..-..+|....+..+|...+..+-..... .....
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4677889999999999988777642 2 223566777778888888888888888766543211 11111
Q ss_pred ---hhhhhhhhchHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHHHccCHHHHHHHH--HHHHhhCCCCHHHHHHHH
Q 024618 113 ---PPELSDSLYYADVARLFVEAARMSP---EDADV---HIVLGVLYNLSRQYDKAIESF--QTALKLKPQDYSLWNKLG 181 (265)
Q Consensus 113 ---~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~---~~~l~~~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~ 181 (265)
|..+....+|..|..+|-++++-.. ++..+ +..+-.+-...+..++--..+ ..+++....+..+...++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 6666667889999999999887532 22333 233333444556666544444 455666667778888888
Q ss_pred HHHHh--hcCcHHHHHHHHHHHhcCCc
Q 024618 182 ATQAN--SVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 182 ~~~~~--~~~~~~A~~~~~~~~~~~~~ 206 (265)
..+.+ ..+|+.|+..|..-+..+|-
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 88765 46888899888887776654
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.34 E-value=2 Score=28.74 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=37.5
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD 57 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 57 (265)
.+..+...+..|++.-|..+.+.++..+|++..+...++.++..+|.-
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 466788888899999999999999999999998888888888776643
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=17 Score=32.62 Aligned_cols=159 Identities=17% Similarity=0.101 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcC----CChHHHHhhhhhhhhhhhhH--HHHHHHHHHHHhcCCCCCCCc-----
Q 024618 44 WRLLGIAHAENDDDQQAIAAMMRAHEAE----PTNLEVLLSLGVSHTNELEQ--AAALKYLYGWLRHHPKYGTIA----- 112 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~----- 112 (265)
+..|+..|...|+.++|+..+.+..+-. +.....+-..-......+.. +-..++-.=.+..+|....-.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 4567788888888888888888887733 32333333333333333333 444555554555555432211
Q ss_pred -----------hhhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc--------cCHHHHHHH--HHHHHhh-
Q 024618 113 -----------PPELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYNLS--------RQYDKAIES--FQTALKL- 169 (265)
Q Consensus 113 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~~~~~- 169 (265)
..-+......+-++.+++.++..... ....+..++..|... ++-+++.+. .++....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 22334555566677777777766544 344444454444322 112233333 2222111
Q ss_pred ------CCC-------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 170 ------KPQ-------DYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 170 ------~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
+|+ ....|...+.++.++|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 111 134566666777777777777777665553
No 410
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=8.8 Score=29.16 Aligned_cols=167 Identities=12% Similarity=0.032 Sum_probs=99.6
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 45 RLLGIAHAENDDDQQAIAAMMRAHEAEPT--------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
..+++-....+++++|+..|.+.+..... ...+...++.+|...|++..--+........-.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~--------- 77 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMED--------- 77 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHH---------
Confidence 55677778889999999999999876321 2346777888888888765544333222211000
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCc
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQS 190 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 190 (265)
---.+..+..+..++..|..+ ..++.-+..+...++..... ...-..+..++.+.|+|
T Consensus 78 ---ftk~k~~KiirtLiekf~~~~-------------dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Y 141 (421)
T COG5159 78 ---FTKPKITKIIRTLIEKFPYSS-------------DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKY 141 (421)
T ss_pred ---hcchhHHHHHHHHHHhcCCCC-------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 001222334444444444322 22233333333333321111 12334567788999999
Q ss_pred HHHHHHHHHHHhc------CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 191 ADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 191 ~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.+|+......+.. .|+-..++..-..+|....+..++...+..+-.
T Consensus 142 sdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 142 SDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred HHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999888776532 344456777788889888888888887776644
No 411
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.52 E-value=6.8 Score=27.58 Aligned_cols=174 Identities=18% Similarity=0.160 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHh-----hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH
Q 024618 21 GLLSEAVLALEAEVLKNPENSEGWRLLGIAHA-----ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 95 (265)
.+|++|.++|+.-...+. .+..-+.+|..++ ..++...|++.+..+-. .+.+.+...+|.++..-....+
T Consensus 49 knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~-- 123 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK-- 123 (248)
T ss_pred HHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc--
Confidence 445555555554433322 3344444444332 23456667777766654 3445555555555442211000
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC
Q 024618 96 KYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QD 173 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~ 173 (265)
.+| +..+|.+++.++-.+ .+..+-+.+...++.-.+ + +....| ..
T Consensus 124 --------~dp--------------d~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~ 170 (248)
T KOG4014|consen 124 --------ADP--------------DSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE--K-------FKTNAPGEGK 170 (248)
T ss_pred --------CCC--------------CcHHHHHHHHHhccC--CCchHHHHHHHHHhccch--h-------hcccCCCCCC
Confidence 011 134555666655443 334455555555543221 1 122233 11
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhc
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAM 237 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 237 (265)
|.. .+..+.-..+.+.|.++--++.+++ ++.+..++.+.|.. -++-++|..+-.++.++
T Consensus 171 p~~---~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 171 PLD---RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred Ccc---hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 211 2233344456667777766666554 34455555555432 12345666666665554
No 412
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.50 E-value=5.4 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=22.1
Q ss_pred hhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 52 AENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
...|+-++--+.+....+....+|+.+..+|.+|.+.|+..++-+.+.++-+
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344444444444444443344455555555555555555555555555444
No 413
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.38 E-value=10 Score=29.50 Aligned_cols=184 Identities=14% Similarity=0.033 Sum_probs=99.8
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-hHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618 21 GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-NLEVLLSLGVSHTNELEQAAALKYLY 99 (265)
Q Consensus 21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (265)
+--++|+.+=.-+...-|..|+++-.++...++..+.. -..+++ .+..+..--...+..+-.+++...+.
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~ 280 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLD 280 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHH
Confidence 34567888888888888999998877777665432211 011110 00000000011122223344444444
Q ss_pred HHHhcCCCCCCCc----hh-----hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 024618 100 GWLRHHPKYGTIA----PP-----ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL- 169 (265)
Q Consensus 100 ~~~~~~~~~~~~~----~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 169 (265)
+++....--+..+ +. .....-+|..-..+|.-.....|+ +.+-.+.+.......-...++...+.....
T Consensus 281 rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 281 RALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARP 359 (415)
T ss_pred HHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence 4443322111111 00 011122455555666666666665 444455555555555566666666655543
Q ss_pred -CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618 170 -KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214 (265)
Q Consensus 170 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 214 (265)
-......+...|.++.+.|+.++|...|++++.+.++..+..+..
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 223445677788899999999999999999999888766544433
No 414
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.33 E-value=12 Score=30.08 Aligned_cols=55 Identities=24% Similarity=0.129 Sum_probs=28.7
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCH--HHHHHHH--HHHHHccCHHHHHHHHHHHHhh
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDA--DVHIVLG--VLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
.+...++|..|...+......-|... ..+..++ ..+...-++.+|.+.++..+..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455566666666666665322222 2233332 3334556667777777766553
No 415
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.27 E-value=3.6 Score=24.08 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=22.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDAD 141 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 141 (265)
|.-+-..|++.+|+.+| .+|++.+.+++...|+++.
T Consensus 13 AVe~D~~gr~~eAi~~Y------------------------~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 13 AVKAEKEGNAEDAITNY------------------------KKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHhcCCHHHHHHHH------------------------HHHHHHHHHHHHhCCChHH
Confidence 33344567777777666 3445667777777777654
No 416
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.21 E-value=5.7 Score=26.37 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=64.0
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
.+.......+++..+..++.++..+..+..++... +..+.+..++. .++.. -.-..+.++.+.+-++++...+.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~y-d~~~~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHY-DIEKVGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccC-CHHHHHHHHHHcCcHHHHHHHHH
Confidence 44566777777777777666777777777777654 34455555552 11111 12223444455555666666655
Q ss_pred HHHhcCCcchhhHHHHHHHHH-hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 199 RALDLKPNYVRAWANMGISYA-NQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
+. .....+ ..++. ..++++.|++++.+ +.+++.|..++..+.
T Consensus 94 k~----~~~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 94 KD----GNFKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred hh----cCHHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 42 111111 11122 22677778877765 346777777776554
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=87.52 E-value=2.7 Score=30.78 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=29.9
Q ss_pred hhHHHHHHHHH---------hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 209 RAWANMGISYA---------NQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 209 ~~~~~l~~~~~---------~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
..+...|..+. ..++...|+.+++++++++|.. .+-..+..+-.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~ 223 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERR 223 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHH
Confidence 44556777773 4567889999999999999874 333333333333
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.80 E-value=5 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP 171 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 171 (265)
+..++.++..|+ +.++..++.++...|+.++|.....++....|
T Consensus 132 ~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334444444443 44455555555555555555555555555555
No 419
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.70 E-value=20 Score=31.10 Aligned_cols=55 Identities=7% Similarity=-0.203 Sum_probs=34.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 181 GATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 181 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
..+....++++.+...+...-....+.....+.+|..+...|+.++|...|+++.
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344466666666666555433223345566677777777788888877777764
No 420
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=21 Score=31.16 Aligned_cols=26 Identities=15% Similarity=-0.026 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRA 67 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 67 (265)
.+-.....+|+.+|+|++|+++.-.+
T Consensus 60 ~AaL~~SKVyy~Lgeye~Al~yAL~a 85 (929)
T KOG2062|consen 60 LAALLASKVYYYLGEYEDALEYALRA 85 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456677788888888888776665
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=15 Score=29.44 Aligned_cols=132 Identities=16% Similarity=0.058 Sum_probs=75.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-C--------ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-----C-ChHHHHh
Q 024618 15 QELFRKGLLSEAVLALEAEVLKNP-E--------NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE-----P-TNLEVLL 79 (265)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~ 79 (265)
..++...++.+|..+-+..+..-. . ....|+.+..++-..|+...-...+...+... . .......
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 344566788888877766554211 1 12356667777777777666555555544321 1 1233445
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
.+-+.|...+.++.|-....+..- |+... +..-....+.+|.+..-+++|..|
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~--pe~~s-------------------------nne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVY--PEAAS-------------------------NNEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccC--ccccc-------------------------cHHHHHHHHHHhhHHHhhcchhHH
Confidence 555667777777777655444321 11100 001134556667777777777777
Q ss_pred HHHHHHHHhhCCCC
Q 024618 160 IESFQTALKLKPQD 173 (265)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (265)
.+++-.++...|.+
T Consensus 267 ~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 267 LEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhCcch
Confidence 77777777777764
No 422
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=86.42 E-value=2.2 Score=19.82 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=15.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
|..+-..+.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556666666666666666543
No 423
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.92 E-value=12 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=30.0
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHh-hcCcHHHHHHHHHHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHA-ENDDDQQAIAAMMRA 67 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 67 (265)
++.+|....+.|+|++.+.++++++..+|+- .+-...++.+|- ..|....+...+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3456667777777777777777777765542 223333444431 233334444444333
No 424
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.89 E-value=2.7 Score=24.56 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 177 WNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 177 ~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
+...+.-+-+.|++.+|+.+|++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344444445555555555555544
No 425
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.85 E-value=5.8 Score=34.30 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH--hhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQA--NSVQSADAILAYQRALDLKPNYVRAWANMGISYAN 220 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (265)
+..+++.+++..+.--|..++.+-|.+ .....+.+.++. ..|++..++.-..-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 344455555556555555555555522 222333333333 34566666666666666666666666666666666
Q ss_pred cCCcHHHHHHHHHHHhcCCCCchh
Q 024618 221 QGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 221 ~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
.++.+-|++...-.....|.+..+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchH
Confidence 666666666655555556665433
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.82 E-value=4.2 Score=28.93 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
.++..++.+...|+ +.++..++.++...|+.++|.....++....|
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444444544553 55666666666666666666666666666666
No 427
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.81 E-value=13 Score=31.54 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=44.7
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--------CcchhhHH---------
Q 024618 150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK--------PNYVRAWA--------- 212 (265)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~--------- 212 (265)
..+.|+++.|.+...++ ++..-|..||.+....+++..|.++|.++.... ..+.+.+.
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 34556666665554432 445566667777777777777777666654331 11222221
Q ss_pred ---HHH-HHHHhcCCcHHHHHHHHHH
Q 024618 213 ---NMG-ISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 213 ---~l~-~~~~~~g~~~~A~~~~~~a 234 (265)
+++ .+++..|+++++++.+...
T Consensus 722 g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cccchHHHHHHHcCCHHHHHHHHHhc
Confidence 222 3566777788777776654
No 428
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=1.2 Score=34.52 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=41.0
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 82 (265)
.+.+-+..+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++......+.
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 3445555555555555555555555555566666666666666666666666666666666655444333
No 429
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.18 E-value=2.3 Score=24.88 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=11.1
Q ss_pred cCcHHHHHHHHHHHHhc
Q 024618 54 NDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 54 ~~~~~~A~~~~~~~~~~ 70 (265)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 56677777777666653
No 430
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.13 E-value=21 Score=29.75 Aligned_cols=90 Identities=14% Similarity=0.035 Sum_probs=43.4
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 024618 77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR 154 (265)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (265)
.+..+-.++.....+.-....+.+.+....+....+ +.++... ..++-...+++..+.+-++...-..++..|.. +
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence 333333334333334444444444444333322222 3333333 33444455555666565556555666665555 6
Q ss_pred CHHHHHHHHHHHHh
Q 024618 155 QYDKAIESFQTALK 168 (265)
Q Consensus 155 ~~~~A~~~~~~~~~ 168 (265)
+-..+..+|.+++.
T Consensus 146 k~sk~a~~f~Ka~y 159 (711)
T COG1747 146 KKSKAAEFFGKALY 159 (711)
T ss_pred chhhHHHHHHHHHH
Confidence 66666666666654
No 431
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.74 E-value=4.3 Score=32.26 Aligned_cols=47 Identities=23% Similarity=0.163 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 154 RQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
+..-+|+..++.++...|.++.....+..+|...|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34567889999999999999999999999999999999999998753
No 432
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.34 E-value=14 Score=27.01 Aligned_cols=61 Identities=28% Similarity=0.334 Sum_probs=54.0
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024618 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY 174 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 174 (265)
..+.+.+...+++...+.-++..|.+......+-.+++-.|+|++|..-++-+-++.|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3567778899999999999999999999888999999999999999999999999888764
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=18 Score=28.09 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA-- 112 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-- 112 (265)
.+++...|..|.+.|+.+.|.+.+.+..+..-. -.-....+|..|....-..+.++..+..++...+...-.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 468888999999999999999988877664321 233456677777776666666666666666555433221
Q ss_pred ----hhhhhhhhchHHHHHHHHHHHhcC
Q 024618 113 ----PPELSDSLYYADVARLFVEAARMS 136 (265)
Q Consensus 113 ----~~~~~~~~~~~~a~~~~~~~~~~~ 136 (265)
|...+...++.+|..+|-..+...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 666777778888888887776554
No 434
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=83.66 E-value=5.7 Score=25.20 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
....|.+.+..|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444556666777777777777776655444444444444444433
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=82.36 E-value=3.7 Score=19.02 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|..+..++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555666666666666666665544
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.29 E-value=18 Score=26.82 Aligned_cols=59 Identities=15% Similarity=0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhhhh-hhhhHHHHHHHHHHHH
Q 024618 44 WRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVSHT-NELEQAAALKYLYGWL 102 (265)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~-~~~~~~~A~~~~~~~~ 102 (265)
+..++.+..+.|+|++.+.++++++..+|.- .+-...++.+|- ..|....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 5678889999999999999999999987753 334444444443 2344445555444433
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.05 E-value=25 Score=28.30 Aligned_cols=92 Identities=11% Similarity=-0.012 Sum_probs=51.0
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--------hHHHHhh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPE---NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--------NLEVLLS 80 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~ 80 (265)
..|..|..-|+++.|++.|.++-..... ....+.++-.+-...|+|.....+..++...-.. .+.+...
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 4566666677777777777765433222 2335555666666677776666666666543100 1123334
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHh
Q 024618 81 LGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
-|.+.+..+++..|..+|-.+..
T Consensus 235 agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 235 AGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555555677777666655443
No 438
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.31 E-value=12 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 210 AWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
...++|..+..+|+.+-.+++++-|
T Consensus 52 sCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 52 SCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHhhHHHHHHHcCChHHHHHHHHHH
Confidence 3456777777777777777777544
No 439
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.26 E-value=33 Score=30.21 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=40.6
Q ss_pred cCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHhh---------cCcHHHHHHHHHHHHhcCCCh
Q 024618 20 KGLLSEAVLALEAEVLKN-PENSEGWRLLGIAHAE---------NDDDQQAIAAMMRAHEAEPTN 74 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~ 74 (265)
-|+-++|+...-.+++.. |-.++.+...|++|-. .+..+.|++.|+++.+..|..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 577888888888877755 5567777777777643 355677888888888888854
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.79 E-value=13 Score=27.27 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=20.8
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 024618 78 LLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT 110 (265)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 110 (265)
....-...+..|+++.|+.....+++.+-..|.
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCc
Confidence 333334556777778887777777776544443
No 441
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=80.71 E-value=23 Score=26.99 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=57.7
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHH---HHHccCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024618 114 PELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVL---YNLSRQY----DKAIESFQTALKLKPQDYSLWNKLGATQ 184 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~---~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (265)
..+...+++++-...+.+..+...+ ..+..+..+.. ....... ..-...++.-++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3456677777777777776643222 11111222221 1122111 1345566666777888888888888776
Q ss_pred Hhhc----------------------CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618 185 ANSV----------------------QSADAILAYQRALDLKPNYVRAWANMGISYANQGMY 224 (265)
Q Consensus 185 ~~~~----------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (265)
.... -.+.|...+.+++.++|....+...+-.+-...|..
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 5421 123445555555555555555555555554445544
No 442
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.68 E-value=21 Score=32.92 Aligned_cols=24 Identities=17% Similarity=-0.086 Sum_probs=11.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
..++.-+...+++-+|-+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 334444445555555555544443
No 443
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.39 E-value=10 Score=22.30 Aligned_cols=13 Identities=23% Similarity=0.003 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHH
Q 024618 87 NELEQAAALKYLY 99 (265)
Q Consensus 87 ~~~~~~~A~~~~~ 99 (265)
..|++++|+.+|.
T Consensus 18 ~~g~y~eAl~~Y~ 30 (77)
T cd02683 18 QEGRFQEALVCYQ 30 (77)
T ss_pred HhccHHHHHHHHH
Confidence 4556666666553
No 444
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=78.92 E-value=39 Score=28.58 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhc-----CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 192 DAILAYQRALDL-----KPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 192 ~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.++..|.+++.. +..+...|..+|..+++.+++.+|+..+-.+-.
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455555433 223345556666667777777777766665543
No 445
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.56 E-value=32 Score=26.87 Aligned_cols=100 Identities=9% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RA 210 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~ 210 (265)
.+++...+..|++.|+.+.|.+.+.+.....-. -.-....+|..|....-..+.++..+..++...+.. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 578999999999999999999999888765321 133455677777666555555555555555544321 23
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
-...|.-.....++.+|-..|-.++....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 33456666677788888888887775443
No 446
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.53 E-value=23 Score=31.29 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=32.9
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 114 PELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
.++.+...+.-|+.+.+..- .+++ -..++...|..++..|++++|...|-+.+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34444445555555443321 1221 2356677788888888888888888777653
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.50 E-value=22 Score=25.09 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhCCCChH--------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 23 LSEAVLALEAEVLKNPENSE--------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
.+.|+..++.+-+..|.... .-.....++.+.|.+++|.+.+++... +|++......|..+-...+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 56788888877655543211 122344568999999999999999988 77776655555554444433
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.31 E-value=37 Score=27.43 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC----C----cchh
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ---DYSLWNKLGATQANSVQSADAILAYQRALDLK----P----NYVR 209 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~----~~~~ 209 (265)
.++..+|..|...|+.+.|++.|-++-....+ ....+.++..+-...|+|..-..+..++...- . -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46778899999999999999999996554322 24567777888888999988888877776541 0 0124
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 210 AWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
+...-|.+...+++|..|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55667777788889999999887654
No 449
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=77.01 E-value=28 Score=25.97 Aligned_cols=159 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhc-CCCCCCCc------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 78 LLSLGVSHTNELEQAAALKYLYGWLRH-HPKYGTIA------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
+..+|.+....++|++.+.+..++++. +|.....- ...-...|....+.+.+...-............-..--
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Q ss_pred HHccCHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHhhcCcH----------HHHHHHHHHHh-----cC
Q 024618 151 NLSRQYDKAIESFQTALKL-----------KPQDYSLWNKLGATQANSVQSA----------DAILAYQRALD-----LK 204 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~-----~~ 204 (265)
++..=-++-...+..++.+ .......+-..|..|...-.+. .|...|+.|++ +.
T Consensus 84 yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~ 163 (244)
T smart00101 84 YRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELP 163 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCC
Q ss_pred Ccch----hhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 205 PNYV----RAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 205 ~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
|.+| -++..-...|..+++.++|+...++++.
T Consensus 164 pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 164 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 450
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=76.82 E-value=31 Score=26.32 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=71.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCC---c-----hhhhhhhhc-hH---HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTI---A-----PPELSDSLY-YA---DVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~-~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
..+...++|++=-..+.+..+...++... + ...+..... .+ .....++.=++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 34566778877777777776543321111 1 111122211 11 355666667778999999999988877
Q ss_pred HHcc----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 151 NLSR----------------------QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 151 ~~~~----------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
.... -.+.|...+.+++.++|....+...+..+-...|+.+=
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDW 151 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchH
Confidence 6421 24678888888999999998888888888888888763
No 451
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.29 E-value=6.1 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=12.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 024618 214 MGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|.-.-..|++++|+.+|.++++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455666666666665544
No 452
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.17 E-value=36 Score=26.78 Aligned_cols=77 Identities=9% Similarity=-0.053 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCCChHHH---HHHHHHHhhcCcHHHHHHHHHHHHhc----------CC--------------------Ch
Q 024618 28 LALEAEVLKNPENSEGW---RLLGIAHAENDDDQQAIAAMMRAHEA----------EP--------------------TN 74 (265)
Q Consensus 28 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~--------------------~~ 74 (265)
..|++..+.-|+..... ..-|.+++..++|.++...+..+-.. .| ..
T Consensus 42 ~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~ 121 (449)
T COG3014 42 KAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNI 121 (449)
T ss_pred hHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchh
Confidence 34555555555443322 23688888888888777766554321 11 11
Q ss_pred ---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618 75 ---LEVLLSLGVSHTNELEQAAALKYLYGWLRH 104 (265)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 104 (265)
..+.+.+|.-|+..++++.|.-.|.++...
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 235566677777788888888777777654
No 453
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=76.09 E-value=6.1 Score=31.36 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC------------cHHHHHHHHHHHhc
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGM------------YEESVRYYVRALAM 237 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~a~~~ 237 (265)
...|+.+++++.. ..+|..|..+|.++..+|+ |.+|.+.+.+|=..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3456677776654 5567888888888887776 56666666666543
No 454
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.92 E-value=39 Score=27.11 Aligned_cols=55 Identities=11% Similarity=-0.073 Sum_probs=41.0
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHH--HHHHHhhcCcHHHHHHHHHH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPEN-----SEGWRL--LGIAHAENDDDQQAIAAMMR 66 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~--l~~~~~~~~~~~~A~~~~~~ 66 (265)
..+..+++.++|..|...|+++....+.. ...+.. .|..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35678899999999999999999875421 122333 44556778899999999986
No 455
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.56 E-value=63 Score=29.27 Aligned_cols=159 Identities=10% Similarity=0.022 Sum_probs=86.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhC----CCChHHHHHHHHHHhhcCcH--HHHHHHHHHHHhcCCChHH-H-----
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKN----PENSEGWRLLGIAHAENDDD--QQAIAAMMRAHEAEPTNLE-V----- 77 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~-~----- 77 (265)
+..++..|...|+.++|++++.+..... +...+.+-..-..+...+.- +-..++..=.+..+|.... +
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 4567889999999999999999998743 22233333333333333333 4555555555555554321 0
Q ss_pred -----Hhhhh--hhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhh--------hhchHHHHHH--HHHHH---
Q 024618 78 -----LLSLG--VSHTNELEQAAALKYLYGWLRHHPKYGTIA----PPELSD--------SLYYADVARL--FVEAA--- 133 (265)
Q Consensus 78 -----~~~la--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~--------~~~~~~a~~~--~~~~~--- 133 (265)
-.... .-+......+-++.+++.++..+......+ ...|.. .++-+++.+. .++..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 00111 123345566677778887777665543333 111111 1111222222 22211
Q ss_pred h----cCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 134 R----MSPE-------DADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 134 ~----~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
. .+|. ....+...+.++.+.|+.++|+..+-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 1221 135677888888899999999998877764
No 456
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=75.04 E-value=40 Score=28.80 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
.+.+....+.-+.............+..+...+..++|-.+|++.+..+|+ +.+...+.-+.+.|-...|...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 333444444433333333445555566666777777777777777777666 455666666677776666666665
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=74.86 E-value=28 Score=24.97 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHhhcCcHHHHHHHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGA-TQANSVQSADAILAYQRA 200 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~ 200 (265)
.+..+-......|+++.|-++|--.+...+-+......+|. ++...+.-....++++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34444555566677777777777766665555544444443 344444433333444443
No 458
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=74.66 E-value=21 Score=23.32 Aligned_cols=60 Identities=18% Similarity=0.048 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
+..+|....+.+++-.++-.|++++.+..+- .....+++..+..+|+.+-.+++++-|-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777788888888888888887652111 23467899999999999999999876543
No 459
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.48 E-value=24 Score=29.98 Aligned_cols=75 Identities=15% Similarity=0.009 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHH
Q 024618 22 LLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYL 98 (265)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 98 (265)
..+.+....+.-+..........+..+..+-..+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3334443333333222223334444455555555555555555555555554 33444444444444444444333
No 460
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=74.46 E-value=53 Score=27.93 Aligned_cols=155 Identities=18% Similarity=0.105 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR--QYDKAIESFQTAL 167 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 167 (265)
-+..|.++++.++.-+|.- ++...++.++|+..+++.....+. .......+.++...+ ....-..+++.++
T Consensus 299 ~yk~a~KYLR~al~s~p~v------lLl~~~~l~eal~~~e~~c~~~~~-~lpi~~~~~lle~~d~~~~~~l~~~~e~~~ 371 (547)
T PF14929_consen 299 AYKYAVKYLRLALQSNPPV------LLLIGGRLKEALNELEKFCISSTC-ALPIRLRAHLLEYFDQNNSSVLSSCLEDCL 371 (547)
T ss_pred HHHHHHHHHHHHhcCCCCe------EEeccccHHHHHHHHHHhccCCCc-cchHHHHHHHHHHhCcccHHHHHHHHHHHh
Confidence 3455666665556555553 556667788888777765443332 333444455555555 6677788999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH---HhcCCcchhhHHHHHHHHHh-cCCcHHHHHHHHHHHhc------
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRA---LDLKPNYVRAWANMGISYAN-QGMYEESVRYYVRALAM------ 237 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~------ 237 (265)
+++|........+...+.. ...+.+.++-. +...|. ..+|...+.++.+ .++++.-.+..+.++++
T Consensus 372 ~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s-~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LD 447 (547)
T PF14929_consen 372 KKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPS-HPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLD 447 (547)
T ss_pred cCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHhccccccccHHHHHHHHhcchhccc
Confidence 9999877666666655544 34445555422 333444 5788889999888 66776555666666532
Q ss_pred ---CCCCchhHHHHHHHHHHh
Q 024618 238 ---NPKADNAWQYLRISLRYA 255 (265)
Q Consensus 238 ---~~~~~~~~~~l~~~~~~~ 255 (265)
...+..+|..+.....+.
T Consensus 448 f~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 448 FAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred ccccccccHHHHHHHHHhhHh
Confidence 223457777777665544
No 461
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=74.37 E-value=6.5 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=7.9
Q ss_pred hHHHHHcCChHHHHHHHHHH
Q 024618 14 GQELFRKGLLSEAVLALEAE 33 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~ 33 (265)
|...-..|++++|+.+|.++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33333344444444444333
No 462
>PRK12798 chemotaxis protein; Reviewed
Probab=74.23 E-value=45 Score=27.02 Aligned_cols=192 Identities=15% Similarity=0.001 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC-CChHHHHhhhhh-hhhhhhhHHHHHHHHHHHHhcCCCCCCCc------
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAE-PTNLEVLLSLGV-SHTNELEQAAALKYLYGWLRHHPKYGTIA------ 112 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------ 112 (265)
.+.-..-|..-+-.|+-.++.+.+..+-... |...-.+..|.. ......+...|+..|+.+--..|....--
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRs 191 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRS 191 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHh
Confidence 3444444555555666666655554432211 111222222222 22234455666666666655555422111
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCC-CHHHHHHHHHHHHhh
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKL-KPQ-DYSLWNKLGATQANS 187 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 187 (265)
..+....|+.++...+..+.+......+ ..+...+......++-. -...+..++.. +|. ...+|..++..-...
T Consensus 192 i~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~ 270 (421)
T PRK12798 192 LFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALID 270 (421)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHc
Confidence 2333455555555555555554443332 22333333333333221 11223444433 222 245566666666666
Q ss_pred cCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 188 VQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
|+.+-|.-.-++++.+.... ..+.+..+..-.-..++++|++.+..
T Consensus 271 Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 271 GKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred CcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 66666666666666554221 22333333333344445555555443
No 463
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=73.79 E-value=56 Score=27.83 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=73.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSL--YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (265)
...|+.++|+..+++.....+....+. +.++...+ ....-..+++...+.+|........+...+.. ...+..
T Consensus 320 l~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~ 396 (547)
T PF14929_consen 320 LIGGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQ 396 (547)
T ss_pred eccccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHH
Confidence 344788888777766443333322222 44444444 45566688888888898876655555554443 444555
Q ss_pred HHHHH---HhhCCCCHHHHHHHHHHHHh-hcCcHHHHHHHHHHHhc---------CCcchhhHHHHHHHHH
Q 024618 162 SFQTA---LKLKPQDYSLWNKLGATQAN-SVQSADAILAYQRALDL---------KPNYVRAWANMGISYA 219 (265)
Q Consensus 162 ~~~~~---~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~ 219 (265)
.++-+ +...| ...+|.....++.+ .++++.-.+....++++ ...+..+|..+....-
T Consensus 397 Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 397 LLEMIALHLDLVP-SHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred HHHHHHHHhhcCC-CchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 55422 33443 45688888888887 56665444445555422 1234456666555444
No 464
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.71 E-value=60 Score=28.19 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=14.8
Q ss_pred HHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 217 SYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
-++..|++++|++.+++. .+-|.+
T Consensus 514 ~~~~~g~~~~AL~~i~~L-~liP~~ 537 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKL-DLIPLD 537 (613)
T ss_dssp HHHHTT-HHHHHHHHHHT-T-S-S-
T ss_pred HHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 356789999999988764 355544
No 465
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=72.76 E-value=51 Score=26.94 Aligned_cols=26 Identities=8% Similarity=-0.218 Sum_probs=22.7
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhC
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKN 37 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 37 (265)
.+|...+-.|+|+-|...|+.+.+-.
T Consensus 213 ~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 213 RLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 57999999999999999999887644
No 466
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=72.46 E-value=8.3 Score=17.74 Aligned_cols=27 Identities=33% Similarity=0.629 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 228 VRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
+++..+++..+|.+..+|...-.+..+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 344555556666666665555544433
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=72.02 E-value=43 Score=25.76 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RA 210 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~ 210 (265)
.+++.++|..|.+.++.+.+.+.+.+.+...-.. .-.-..+|.+|..+.-.++.++..+..++...+.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 5789999999999999999999998887653221 23345667777777667777777777777655432 22
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
-...|.......++.+|-..+...+....
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 33456666777788888888887775443
No 468
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=71.93 E-value=1.2 Score=37.26 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHH--hCCC-ChHHHHHHHHHHhhcCcHHHHHHHHHHH--HhcCCC-hHHHHhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVL--KNPE-NSEGWRLLGIAHAENDDDQQAIAAMMRA--HEAEPT-NLEVLLSLGVS 84 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~~~la~~ 84 (265)
+.-+..++..|++..|..++.++-. ..|. ........+.+....|+++.|+..+... ..+.+. ....+...+.+
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a 107 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQA 107 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHH
Confidence 4456666677777777777666541 1221 2234445566666677777777666531 111111 12344445666
Q ss_pred hhhhhhHHHHHHHHH
Q 024618 85 HTNELEQAAALKYLY 99 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~ 99 (265)
+...|++-+|...+-
T Consensus 108 ~~~~~~~l~Aa~~~i 122 (536)
T PF04348_consen 108 YEQQGDPLAAARERI 122 (536)
T ss_dssp ---------------
T ss_pred HHhcCCHHHHHHHHH
Confidence 666666655555443
No 469
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=71.72 E-value=8.2 Score=22.60 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=7.8
Q ss_pred CcHHHHHHHHHHHHh
Q 024618 55 DDDQQAIAAMMRAHE 69 (265)
Q Consensus 55 ~~~~~A~~~~~~~~~ 69 (265)
|++++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555543
No 470
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.48 E-value=0.73 Score=30.83 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=47.7
Q ss_pred HHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHH
Q 024618 149 LYNLSRQYDKAIESFQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES 227 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (265)
.+...+.......+++.++..+ ..++..+..+..+|.+.+..++...+++..-..+ ...++....+.|.+++|
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd------~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD------LDKALRLCEKHGLYEEA 89 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-------CTHHHHHHHTTTSHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC------HHHHHHHHHhcchHHHH
Confidence 3445667777778888887654 3457778888888888877777777766211111 12244445566666666
Q ss_pred HHHHHH
Q 024618 228 VRYYVR 233 (265)
Q Consensus 228 ~~~~~~ 233 (265)
+-.|.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 665544
No 471
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.13 E-value=8 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=7.8
Q ss_pred HHHHHcCChHHHHHHHHHH
Q 024618 15 QELFRKGLLSEAVLALEAE 33 (265)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~~ 33 (265)
...=..|+|++|+.+|.++
T Consensus 14 ve~D~~g~y~eA~~~Y~~a 32 (76)
T cd02681 14 VQRDQEGRYSEAVFYYKEA 32 (76)
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 3333344444444444443
No 472
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.01 E-value=35 Score=24.26 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNL-----SR--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
...|++.+..+-. .+.+.+-..+|.++.. .+ +.++|.+++.++... ++..+.+.|...++.-. ++
T Consensus 89 l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k-- 160 (248)
T KOG4014|consen 89 LSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK-- 160 (248)
T ss_pred HHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh--
Confidence 4455555555443 3445666666665543 22 367888888888765 45556666666555322 22
Q ss_pred HHHHHHHhcCCc--chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 195 LAYQRALDLKPN--YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 195 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
+....|. .+.. .+..+.-..+.+.|..+-.++-+++ ++.+..++.+.|.
T Consensus 161 -----~~t~ap~~g~p~~---~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 161 -----FKTNAPGEGKPLD---RAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK 211 (248)
T ss_pred -----hcccCCCCCCCcc---hhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence 1122332 1222 2333344567788888888888774 4555555555543
No 473
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=70.98 E-value=12 Score=24.34 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHH
Q 024618 45 RLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVL 78 (265)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 78 (265)
..+|..+...|++++|..+|-+|+...|...+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 3578888888888999999999988888765543
No 474
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.58 E-value=9.5 Score=22.43 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=7.4
Q ss_pred hcCCcHHHHHHHHHHH
Q 024618 220 NQGMYEESVRYYVRAL 235 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~ 235 (265)
..|+|++|+.+|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 18 QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HccCHHHHHHHHHHHH
Confidence 3444444444444443
No 475
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=70.03 E-value=19 Score=23.46 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYG 109 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 109 (265)
..+|..+...|++++|..+|-+++...|+-.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 4456666667777777777777777776643
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=69.39 E-value=18 Score=20.27 Aligned_cols=53 Identities=26% Similarity=0.223 Sum_probs=34.1
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChH------HHHHHHHHHhhcCcHHHHHHH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSE------GWRLLGIAHAENDDDQQAIAA 63 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~ 63 (265)
+..|..++..|+|=+|=+.++.+....|.... +....|....+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45678888899999999999888765543322 122234446677887777654
No 477
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=68.68 E-value=1.6 Score=36.61 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHH--hcCCC-hHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAH--EAEPT-NLEVLLSLGVSHTNELEQAAALKYLY 99 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (265)
...+.-+..+...|++..|...+.+.- .+.|. ........+.+....|+++.|+..+.
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 344556777788888888887777665 22222 23445556667777777777777665
No 478
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=68.51 E-value=12 Score=17.79 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618 224 YEESVRYYVRALAMNPKADNAWQYLR 249 (265)
Q Consensus 224 ~~~A~~~~~~a~~~~~~~~~~~~~l~ 249 (265)
++.|...|++.+...|+ +..|...|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45555666666555544 44444433
No 479
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=67.67 E-value=12 Score=17.54 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhc----CcHHHHHHHHHHHHh
Q 024618 43 GWRLLGIAHAEN----DDDQQAIAAMMRAHE 69 (265)
Q Consensus 43 ~~~~l~~~~~~~----~~~~~A~~~~~~~~~ 69 (265)
+.+.+|.++..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344455544321 255555555555543
No 480
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=67.61 E-value=14 Score=29.49 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (265)
...|+.+++++.. .++|..|..+|.++...|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 3456667776655 5778899999998888776
No 481
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=67.00 E-value=60 Score=26.56 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=51.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----H---HH--------HHHHHHHHH-hhcC-----cHHHHHHHHHHH
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQD-----Y---SL--------WNKLGATQA-NSVQ-----SADAILAYQRAL 201 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~---~~--------~~~l~~~~~-~~~~-----~~~A~~~~~~~~ 201 (265)
...|.-+...|++.+|+..|+.++..-|-. . ++ -+.+|.... ..+. .++..+.++-+.
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAA 287 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAA 287 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 345666788899999999999988753211 0 11 112222111 1111 122223233222
Q ss_pred -----hcCCcchhh-HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 202 -----DLKPNYVRA-WANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 202 -----~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
++.|.+... +..--...++.++|..|..+.++.+++.|....
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 223433222 222223456889999999999999999987543
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.45 E-value=96 Score=27.61 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhhhhhhhh---hhhhHHHHHHHHHHHHhcCCC-CC
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLSLGVSHT---NELEQAAALKYLYGWLRHHPK-YG 109 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~-~~ 109 (265)
.++....+-..|....+|+.-++..+..-.+ |+. ..+.+..+.++. +.|+-++|+...-.+++.... .+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3556667777788888998888777665443 422 122223333332 457888898888888775433 22
Q ss_pred CCc---hhh---------hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCC-----
Q 024618 110 TIA---PPE---------LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-YDKAIESFQTALKLKP----- 171 (265)
Q Consensus 110 ~~~---~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~----- 171 (265)
+.+ |.+ +...+..+.|+++|+++++..|... .-.+++.++...|+ ++...+.-.-.++++.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 222 333 3445667889999999999988642 23344555544443 3333332222222211
Q ss_pred C---CHHHHHHHHHH---HHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 172 Q---DYSLWNKLGAT---QANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 172 ~---~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
. ....|...|.. -.-.+++.+|+..-+..+++.|..
T Consensus 358 G~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 358 GALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 0 11112222221 223477788888877777777654
No 483
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.01 E-value=1.3e+02 Score=28.32 Aligned_cols=183 Identities=15% Similarity=0.070 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh------hhhh----HHHHHHHHHHHHhcCCCCCC
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT------NELE----QAAALKYLYGWLRHHPKYGT 110 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~----~~~A~~~~~~~~~~~~~~~~ 110 (265)
+...+.+|.+|...|+..+|+.+|.++..-..... ++..+..... ..|+ ...|+.+|.+++++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rl------ 992 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRL------ 992 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHH------
Confidence 44566778888888888888888888766433222 2222221110 1121 11245566555543
Q ss_pred CchhhhhhhhchHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 024618 111 IAPPELSDSLYYADVARLFVEAARMSPED----ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGAT 183 (265)
Q Consensus 111 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~ 183 (265)
+..-+..+.+.....++++.-|++ +.+...+-.-+...|.+-+|...+ -.+|+.. ..+..+-.+
T Consensus 993 -----le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 993 -----LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred -----HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHH
Confidence 333444566666666777654433 334444555566777777775543 3345532 334455555
Q ss_pred HHhhcCcH------------HHHH-HHHHHHhcCCcch-hhHHHHHHHHHhcCCcHHHH-HHHHHHHhcCC
Q 024618 184 QANSVQSA------------DAIL-AYQRALDLKPNYV-RAWANMGISYANQGMYEESV-RYYVRALAMNP 239 (265)
Q Consensus 184 ~~~~~~~~------------~A~~-~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~ 239 (265)
++..|+.+ +-.. .++.+-...|... ..|..+=-.+...+++.+|- -+|+.+..+..
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 66655543 2223 3333434444332 33333444556677777664 45666666543
No 484
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.98 E-value=96 Score=26.43 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 139 DADVHIVLGVLYNL--SRQYDKAIESFQTALKL-----KPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 139 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.|.++..+|.+-.. ...-..++.+|.+++.. +..+...|..+|-.+++.+++.+|+..+-.+-..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655432 23345677888888764 3345667888999999999999999998877543
No 485
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=62.30 E-value=17 Score=17.42 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.0
Q ss_pred cHHHHHHHHHHHHh
Q 024618 56 DDQQAIAAMMRAHE 69 (265)
Q Consensus 56 ~~~~A~~~~~~~~~ 69 (265)
+.++|..+++++.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 34555555555443
No 486
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.24 E-value=1.4e+02 Score=28.13 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=94.3
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc------------CCCC--
Q 024618 74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM------------SPED-- 139 (265)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-- 139 (265)
.+...+.+|.+|...|+.-+|+.+|.++..-..+. +|+ .+.+.. .|..
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~---------------~aL---~~lv~~~~p~~~sv~dG~t~s~e~ 980 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG---------------NAL---RKLVYFLLPKRFSVADGKTPSEEL 980 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccH---------------HHH---HHHHHHhcCCCCchhcCCCCCchH
Confidence 34567888999999999999999999887654332 111 111111 1111
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhh
Q 024618 140 --ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRA 210 (265)
Q Consensus 140 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 210 (265)
...+....+++...+-.+.+++...+|++.-|++ +.....+=.-+...|.+-+|...+ -.+|+. -..
T Consensus 981 t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdc 1056 (1480)
T KOG4521|consen 981 TALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHH
Confidence 1223344556677788888888888888865443 233333444455677777776543 335553 245
Q ss_pred HHHHHHHHHhcCCcH------------HHHH-HHHHHHhcCCCC-chhHHHHHHHHHHhCCcccc
Q 024618 211 WANMGISYANQGMYE------------ESVR-YYVRALAMNPKA-DNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~------------~A~~-~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A 261 (265)
+..+..+++..|+.+ +-.. .++.+-...|.. ...+..|--.+...+++.+|
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rka 1121 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKA 1121 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHH
Confidence 566777777777653 2223 333444434433 33344444445566666555
No 487
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.14 E-value=88 Score=25.71 Aligned_cols=94 Identities=15% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH-----------HhhCCCCHHHHHHHHHHHHhhcCc----------HHHHHHHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTA-----------LKLKPQDYSLWNKLGATQANSVQS----------ADAILAYQRAL 201 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~ 201 (265)
+...|...+....|++|+.++-.+ ++.-.+.+-.-..+-+||+...+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Q ss_pred hcC---------Ccchh------hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 202 DLK---------PNYVR------AWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 202 ~~~---------~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
-.+ +..|+ .+..-|.+.+.+|+-++|.++++.+..
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
No 488
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=61.97 E-value=38 Score=21.44 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=23.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSV 188 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (265)
...|.+-...|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334555566667777777766665553333333333344443333
No 489
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=61.74 E-value=28 Score=30.49 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=55.9
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCh----HHHHhhhhhhhh--hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhh
Q 024618 47 LGIAHAENDDDQQAIAAMMRAHEAEPTN----LEVLLSLGVSHT--NELEQAAALKYLYGWLRHHPKYGTIA---PPELS 117 (265)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~ 117 (265)
-++..++.+++..+..-|..++.+-|.+ .....+.+.++. ..|++..++.-..-++...|.....+ +..|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3566777778888777777777776632 233444444444 34567777766666666666544443 34555
Q ss_pred hhhchHHHHHHHHHHHhcCCCCHHH
Q 024618 118 DSLYYADVARLFVEAARMSPEDADV 142 (265)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~ 142 (265)
..+.++-|++.+.-.....|.+..+
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchH
Confidence 5555555555555555555555433
No 490
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=61.59 E-value=1.5e+02 Score=28.02 Aligned_cols=14 Identities=14% Similarity=-0.097 Sum_probs=5.8
Q ss_pred HHHHHHHhCCcccc
Q 024618 248 LRISLRYAGRYPNR 261 (265)
Q Consensus 248 l~~~~~~~~~~~~A 261 (265)
|+..+..++++-+|
T Consensus 1005 L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHHHcccchhH
Confidence 34444444444333
No 491
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=61.55 E-value=17 Score=21.55 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 189 QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 189 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|+.|....++++.. -..|+.++|+.+|++++.
T Consensus 4 ~~~~A~~~I~kaL~~---------------dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRA---------------DEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhh---------------hhcCCHHHHHHHHHHHHH
Confidence 345555555555544 344666666666666654
No 492
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.88 E-value=16 Score=21.26 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 024618 24 SEAVLALEAEVL 35 (265)
Q Consensus 24 ~~A~~~~~~~~~ 35 (265)
++|+.++.++++
T Consensus 4 ~~A~~l~~~Av~ 15 (75)
T cd02678 4 QKAIELVKKAIE 15 (75)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 493
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.88 E-value=6.9 Score=26.08 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCCCCCCchhhhhhhhchHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618 105 HPKYGTIAPPELSDSLYYADVARLFVEAARMS-PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT 183 (265)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 183 (265)
++..+......+...+.......+++.++..+ +.++.....+..+|.+.++.++...+++.. ++. -...++..
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-----~~y-d~~~~~~~ 79 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-----NNY-DLDKALRL 79 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-----SSS--CTHHHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-----ccc-CHHHHHHH
Confidence 34444444566666777778888888888655 455888999999999998878888777621 111 11234444
Q ss_pred HHhhcCcHHHHHHHHH
Q 024618 184 QANSVQSADAILAYQR 199 (265)
Q Consensus 184 ~~~~~~~~~A~~~~~~ 199 (265)
+.+.|-+++|+-.|.+
T Consensus 80 c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 80 CEKHGLYEEAVYLYSK 95 (143)
T ss_dssp HHTTTSHHHHHHHHHC
T ss_pred HHhcchHHHHHHHHHH
Confidence 4555666666555543
No 494
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.69 E-value=80 Score=24.75 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CCcchhh
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--------DYSLWNKLGATQANSVQSADAILAYQRALDL--KPNYVRA 210 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 210 (265)
.....+|.+|...++|..|...+.-. ..+.. ....+..+|.+|.+.++..+|..+..++--. +..+...
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 34556677777777777666655432 11110 0234556677777777777776666655321 2233332
Q ss_pred HH----HHHHHHHhcCCcHHHHHHHHH
Q 024618 211 WA----NMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 211 ~~----~l~~~~~~~g~~~~A~~~~~~ 233 (265)
.. ..+.+.-..+++-+|-..|-+
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 234444445555555444433
No 495
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.52 E-value=28 Score=19.43 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
..-.......+...|++++|.+++.+...
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344555556677777777777666543
No 496
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=59.88 E-value=17 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHH
Q 024618 23 LSEAVLALEAEVL 35 (265)
Q Consensus 23 ~~~A~~~~~~~~~ 35 (265)
+++|+.+..++++
T Consensus 5 ~~~A~~li~~Av~ 17 (77)
T smart00745 5 LSKAKELISKALK 17 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 497
>PRK12798 chemotaxis protein; Reviewed
Probab=59.68 E-value=96 Score=25.31 Aligned_cols=161 Identities=14% Similarity=0.007 Sum_probs=94.4
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--------hhhhhhhhchHHHHHHHHHHHhcCCCCH---HHH
Q 024618 75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--------PPELSDSLYYADVARLFVEAARMSPEDA---DVH 143 (265)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 143 (265)
.+.-..-|..-+-.|+..++.+.+..+ +|...... .-......+..+|+..|+.+--..|... .++
T Consensus 112 ~d~~L~~g~laY~~Gr~~~a~~~La~i---~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAAL 188 (421)
T PRK12798 112 FDQRLADGALAYLSGRGREARKLLAGV---APEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAAL 188 (421)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHhhcC---ChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 344444455555677777777666443 33222211 3334455677888888888877777643 233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhcCcHHHHHHHHHHHhc-CCc-chhhHHHHHHHH
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSL---WNKLGATQANSVQSADAILAYQRALDL-KPN-YVRAWANMGISY 218 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~l~~~~ 218 (265)
..-..+....|+.++...+-.+-+.....++.+ +..+.......++-.. ...+...+.. +|. ...+|..++..-
T Consensus 189 RRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~A 267 (421)
T PRK12798 189 RRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAA 267 (421)
T ss_pred HHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 333445567788888887777777766666533 3333333333332221 1224444443 333 246777788888
Q ss_pred HhcCCcHHHHHHHHHHHhcCC
Q 024618 219 ANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 219 ~~~g~~~~A~~~~~~a~~~~~ 239 (265)
...|+.+-|.-.-.+++.+..
T Consensus 268 li~Gk~~lA~~As~~A~~L~~ 288 (421)
T PRK12798 268 LIDGKTELARFASERALKLAD 288 (421)
T ss_pred HHcCcHHHHHHHHHHHHHhcc
Confidence 888888888888888877753
No 498
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=59.20 E-value=86 Score=24.62 Aligned_cols=236 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH--------HHHHHhhcCcHHHHHHHHHHHHh-cCCCh---
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL--------LGIAHAENDDDQQAIAAMMRAHE-AEPTN--- 74 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~A~~~~~~~~~-~~~~~--- 74 (265)
.+..-.+.-.++..|+++.| +.++++....+...... ++....-..+...|...|....+ .++..
T Consensus 26 Ep~~~~qVplLL~m~e~e~A---L~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~ 102 (319)
T PF04840_consen 26 EPRASKQVPLLLKMGEDELA---LNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQNPVASNLYKKYCREQDRELLKD 102 (319)
T ss_pred CCChHHHHHHHhcCCchHHH---HHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhCcchHHHHHHHHHhccHHHHHH
Q ss_pred ----HHHHhhhhhhhhhhh----hHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q 024618 75 ----LEVLLSLGVSHTNEL----EQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHI 144 (265)
Q Consensus 75 ----~~~~~~la~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 144 (265)
.+-+..+|.+....+ +.++-...+..+.+......... ..+....-+.-+-..-+++-.. ..-......
T Consensus 103 ~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~~Q~~Le~~~~-~~f~~~Sl~ 181 (319)
T PF04840_consen 103 FYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLEYQKELEEKYN-TNFVGLSLN 181 (319)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhc-cchhcCCHH
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY 224 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (265)
....-+...|+...|... .-+..-.+...|.....++...++|++-..+... ...|-.|.-...++...|+.
T Consensus 182 ~Ti~~li~~~~~k~A~kl---~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKL---KKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHCCCHHHHHHH---HHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCH
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 225 EESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 225 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.+|..+..+ ... ......|.+.|++.+|.+
T Consensus 254 ~eA~~yI~k--------~~~-~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 254 KEASKYIPK--------IPD-EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HHHHHHHHh--------CCh-HHHHHHHHHCCCHHHHHH
No 499
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=58.98 E-value=87 Score=24.60 Aligned_cols=167 Identities=10% Similarity=-0.030 Sum_probs=79.5
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--CCC--hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--EPT--NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
.|+..++++..+...+..|+|..|-.++-....+ +|+ ...+....--.-.-+.+|+.|++-+.+.-+.-......-
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~f~~ 204 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKSFST 204 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccccccc
Confidence 3556667788888888888888887765443332 222 223333222233445678888777766655322211110
Q ss_pred ------------hhhhhhhhchHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCC
Q 024618 113 ------------PPELSDSLYYADVARLFVEAARMSP--------EDADVHIVLGVLYNLS-RQYDKAIESFQTALKLKP 171 (265)
Q Consensus 113 ------------~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 171 (265)
-+.+.-.-++.++...+-.++-..| ..|..+..++.+-.-. .+...+++.+-+.++...
T Consensus 205 ~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ 284 (432)
T KOG2758|consen 205 SAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQES 284 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhc
Confidence 0000000011111111111111111 1234444445444333 555666666767666532
Q ss_pred CC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 172 QD-YSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 172 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
.. .+.....-.|++-.=+++.|...++++-+.
T Consensus 285 ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 285 YSYKDPITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred cccCCcHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 11 122233445555667788887777666544
No 500
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=58.68 E-value=78 Score=24.01 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
++.+......+..+.+.-..++|+..+-+.+... ++-.....+.++-+++ -..|+..+.+.+.....++-+....+.
T Consensus 166 ~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~-s~~ai~~L~k~L~d~~E~pMVRhEaAe 242 (289)
T KOG0567|consen 166 ETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQ-SPAAIPSLIKVLLDETEHPMVRHEAAE 242 (289)
T ss_pred cchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhcc-chhhhHHHHHHHHhhhcchHHHHHHHH
Confidence 3344455556666666666688988888877653 5555556666665554 357889999999888888888777777
Q ss_pred HHHhcCCcHHHHHHHHHHHh
Q 024618 217 SYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~ 236 (265)
++...++ +++++.+++.+.
T Consensus 243 ALGaIa~-e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 243 ALGAIAD-EDCVEVLKEYLG 261 (289)
T ss_pred HHHhhcC-HHHHHHHHHHcC
Confidence 7777775 678888877654
Done!