Query 024618
Match_columns 265
No_of_seqs 870 out of 1506
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 11:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eqf_A PEX5-related protein; a 100.0 1E-39 3.4E-44 254.1 26.5 262 2-263 60-348 (365)
2 1fch_A Peroxisomal targeting s 100.0 6.5E-39 2.2E-43 249.6 30.0 263 2-264 59-352 (368)
3 3cv0_A Peroxisome targeting si 100.0 1.6E-38 5.3E-43 243.4 28.8 264 2-265 16-309 (327)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-39 3E-43 250.7 26.2 253 12-264 106-361 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.5E-39 2.2E-43 251.5 25.0 253 11-263 71-326 (388)
6 3hym_B Cell division cycle pro 100.0 1.1E-37 3.8E-42 239.0 25.9 257 8-264 23-292 (330)
7 3hym_B Cell division cycle pro 100.0 6.6E-36 2.3E-40 229.1 27.9 252 8-259 57-322 (330)
8 3ieg_A DNAJ homolog subfamily 100.0 3.8E-36 1.3E-40 232.9 26.4 255 10-264 6-328 (359)
9 3ieg_A DNAJ homolog subfamily 100.0 8.8E-36 3E-40 230.8 27.2 248 10-257 40-355 (359)
10 2y4t_A DNAJ homolog subfamily 100.0 1.2E-35 4.1E-40 237.1 25.4 253 10-262 29-315 (450)
11 2y4t_A DNAJ homolog subfamily 100.0 2.4E-35 8.2E-40 235.4 26.3 259 7-265 60-352 (450)
12 2h6f_A Protein farnesyltransfe 100.0 8.6E-36 2.9E-40 231.3 22.8 245 10-255 100-366 (382)
13 3uq3_A Heat shock protein STI1 100.0 8.3E-35 2.8E-39 215.5 24.7 237 9-251 7-256 (258)
14 2xpi_A Anaphase-promoting comp 100.0 1E-34 3.5E-39 239.5 26.3 257 9-265 307-573 (597)
15 3fp2_A TPR repeat-containing p 100.0 4.2E-35 1.4E-39 238.8 23.7 254 9-264 27-400 (537)
16 3u4t_A TPR repeat-containing p 100.0 6.8E-35 2.3E-39 217.8 21.4 249 7-256 3-269 (272)
17 1fch_A Peroxisomal targeting s 100.0 2.9E-35 9.8E-40 229.0 16.1 249 16-265 34-308 (368)
18 2pl2_A Hypothetical conserved 100.0 5.9E-34 2E-38 205.7 21.6 207 8-235 6-212 (217)
19 2xpi_A Anaphase-promoting comp 100.0 9.4E-33 3.2E-37 227.8 29.3 248 6-253 338-595 (597)
20 4eqf_A PEX5-related protein; a 100.0 2.8E-35 9.4E-40 229.1 13.2 238 28-265 48-304 (365)
21 2h6f_A Protein farnesyltransfe 100.0 1E-34 3.5E-39 225.2 15.2 222 34-256 90-323 (382)
22 2pl2_A Hypothetical conserved 100.0 5.2E-33 1.8E-37 200.8 22.5 204 38-265 2-208 (217)
23 2gw1_A Mitochondrial precursor 100.0 1.2E-33 4.3E-38 228.9 21.3 253 9-263 8-359 (514)
24 2gw1_A Mitochondrial precursor 100.0 5.4E-33 1.8E-37 225.1 22.7 258 7-265 39-395 (514)
25 3fp2_A TPR repeat-containing p 100.0 4.9E-33 1.7E-37 226.6 18.7 248 17-265 212-485 (537)
26 2q7f_A YRRB protein; TPR, prot 100.0 1.1E-31 3.8E-36 197.0 21.7 221 5-256 21-241 (243)
27 3cv0_A Peroxisome targeting si 100.0 8.1E-32 2.8E-36 206.1 19.7 233 8-240 56-318 (327)
28 4g1t_A Interferon-induced prot 100.0 2.4E-31 8.1E-36 213.6 23.0 254 11-264 55-356 (472)
29 1xnf_A Lipoprotein NLPI; TPR, 100.0 4.7E-32 1.6E-36 202.6 16.0 250 11-265 9-269 (275)
30 3u4t_A TPR repeat-containing p 100.0 2.4E-31 8.1E-36 198.6 17.8 225 40-265 2-244 (272)
31 4g1t_A Interferon-induced prot 100.0 1.5E-30 5E-35 209.0 22.5 256 10-265 97-453 (472)
32 3uq3_A Heat shock protein STI1 100.0 1.5E-31 5E-36 198.0 15.4 217 40-265 4-230 (258)
33 3sf4_A G-protein-signaling mod 100.0 8.5E-32 2.9E-36 211.9 14.2 257 9-265 11-330 (406)
34 3mkr_A Coatomer subunit epsilo 100.0 1.7E-30 5.9E-35 195.4 20.1 227 11-245 38-272 (291)
35 4abn_A Tetratricopeptide repea 100.0 1.6E-30 5.4E-35 208.4 20.7 212 21-233 82-317 (474)
36 3mkr_A Coatomer subunit epsilo 100.0 2.4E-30 8.2E-35 194.6 19.9 241 13-261 5-253 (291)
37 3vtx_A MAMA; tetratricopeptide 100.0 7.5E-30 2.6E-34 179.6 20.5 173 39-242 3-175 (184)
38 2ho1_A Type 4 fimbrial biogene 100.0 1.8E-29 6.1E-34 186.4 22.7 210 10-248 40-249 (252)
39 3ro2_A PINS homolog, G-protein 100.0 4.9E-31 1.7E-35 202.2 14.4 257 9-265 7-326 (338)
40 4a1s_A PINS, partner of inscut 100.0 1.8E-31 6.3E-36 210.6 12.3 256 10-265 51-366 (411)
41 2vq2_A PILW, putative fimbrial 100.0 5.5E-29 1.9E-33 180.4 22.7 211 9-248 10-222 (225)
42 3vtx_A MAMA; tetratricopeptide 100.0 1.9E-28 6.4E-33 172.5 21.4 171 8-209 6-176 (184)
43 4i17_A Hypothetical protein; T 100.0 4E-28 1.4E-32 176.6 21.7 208 8-253 8-225 (228)
44 2ond_A Cleavage stimulation fa 100.0 1.1E-27 3.8E-32 182.0 24.4 221 24-244 33-277 (308)
45 1ouv_A Conserved hypothetical 100.0 2.1E-27 7.3E-32 177.4 25.0 226 7-244 6-258 (273)
46 2vq2_A PILW, putative fimbrial 100.0 2.8E-27 9.4E-32 171.4 23.0 175 9-214 44-222 (225)
47 3qky_A Outer membrane assembly 100.0 1.1E-27 3.9E-32 177.7 20.7 202 35-264 9-254 (261)
48 1xnf_A Lipoprotein NLPI; TPR, 100.0 4.4E-28 1.5E-32 181.1 17.6 219 9-231 45-269 (275)
49 2q7f_A YRRB protein; TPR, prot 100.0 6E-28 2E-32 177.1 18.0 195 40-265 22-216 (243)
50 3sf4_A G-protein-signaling mod 100.0 6.7E-29 2.3E-33 195.4 13.3 253 9-261 49-366 (406)
51 1ouv_A Conserved hypothetical 100.0 7.9E-27 2.7E-31 174.3 23.8 217 37-265 2-245 (273)
52 4abn_A Tetratricopeptide repea 100.0 7.8E-28 2.7E-32 192.9 19.2 193 7-200 102-318 (474)
53 4gyw_A UDP-N-acetylglucosamine 100.0 5.9E-28 2E-32 200.8 18.4 173 36-239 4-176 (723)
54 2ho1_A Type 4 fimbrial biogene 100.0 1.4E-27 4.9E-32 176.2 18.0 198 36-264 31-231 (252)
55 4i17_A Hypothetical protein; T 100.0 5E-27 1.7E-31 170.8 19.6 182 7-219 42-225 (228)
56 4gyw_A UDP-N-acetylglucosamine 100.0 8.3E-27 2.8E-31 193.9 18.8 164 70-264 4-167 (723)
57 3dra_A Protein farnesyltransfe 99.9 1.5E-25 5.2E-30 167.7 22.2 239 13-251 38-302 (306)
58 3qky_A Outer membrane assembly 99.9 3.7E-26 1.3E-30 169.6 18.4 208 7-228 15-252 (261)
59 2ond_A Cleavage stimulation fa 99.9 3.1E-26 1.1E-30 174.0 17.9 207 58-264 33-263 (308)
60 4a1s_A PINS, partner of inscut 99.9 4.7E-27 1.6E-31 185.4 13.1 233 9-241 88-376 (411)
61 3ulq_A Response regulator aspa 99.9 1.2E-26 4E-31 181.6 15.0 227 12-239 108-370 (383)
62 3nf1_A KLC 1, kinesin light ch 99.9 5.3E-27 1.8E-31 178.1 11.1 231 10-240 30-310 (311)
63 3ro2_A PINS homolog, G-protein 99.9 1.1E-26 3.8E-31 177.9 12.2 232 10-241 46-336 (338)
64 4ga2_A E3 SUMO-protein ligase 99.9 3.3E-26 1.1E-30 155.3 12.1 145 113-257 4-149 (150)
65 3ulq_A Response regulator aspa 99.9 2.7E-26 9.2E-31 179.6 12.3 222 43-265 105-362 (383)
66 2pzi_A Probable serine/threoni 99.9 2.5E-25 8.6E-30 185.6 17.2 184 36-223 389-583 (681)
67 3urz_A Uncharacterized protein 99.9 9.7E-25 3.3E-29 156.4 17.9 179 40-251 3-199 (208)
68 2ooe_A Cleavage stimulation fa 99.9 2.8E-24 9.5E-29 175.0 22.5 253 7-262 13-411 (530)
69 1qqe_A Vesicular transport pro 99.9 2.4E-25 8.2E-30 167.8 13.4 217 22-252 32-284 (292)
70 2xm6_A Protein corresponding t 99.9 1.4E-23 4.7E-28 169.4 24.4 233 20-264 164-425 (490)
71 3nf1_A KLC 1, kinesin light ch 99.9 1.8E-26 6.1E-31 175.2 7.1 229 37-265 23-301 (311)
72 3q15_A PSP28, response regulat 99.9 7.9E-25 2.7E-29 170.9 16.4 227 10-237 104-365 (378)
73 2pzi_A Probable serine/threoni 99.9 1.9E-25 6.5E-30 186.3 13.7 186 69-258 388-584 (681)
74 3as5_A MAMA; tetratricopeptide 99.9 3.4E-24 1.2E-28 150.4 17.9 173 41-244 8-180 (186)
75 2xm6_A Protein corresponding t 99.9 2E-23 6.9E-28 168.4 24.2 241 9-263 41-317 (490)
76 2yhc_A BAMD, UPF0169 lipoprote 99.9 6.5E-24 2.2E-28 154.0 18.5 206 8-243 5-219 (225)
77 4ga2_A E3 SUMO-protein ligase 99.9 4.3E-25 1.5E-29 149.8 11.4 146 47-223 3-149 (150)
78 3dra_A Protein farnesyltransfe 99.9 1.1E-23 3.7E-28 157.7 18.9 211 55-265 47-281 (306)
79 2yhc_A BAMD, UPF0169 lipoprote 99.9 2.9E-23 1E-27 150.5 20.4 192 40-264 3-206 (225)
80 3as5_A MAMA; tetratricopeptide 99.9 5.5E-24 1.9E-28 149.4 16.0 171 9-210 10-180 (186)
81 2ooe_A Cleavage stimulation fa 99.9 2.3E-23 7.8E-28 169.6 21.3 218 24-241 255-496 (530)
82 3urz_A Uncharacterized protein 99.9 8.7E-24 3E-28 151.4 15.8 176 8-216 5-198 (208)
83 4gco_A Protein STI-1; structur 99.9 5E-24 1.7E-28 140.0 13.3 122 131-252 4-125 (126)
84 3dss_A Geranylgeranyl transfer 99.9 2.5E-22 8.5E-27 151.1 24.1 238 15-252 37-319 (331)
85 3edt_B KLC 2, kinesin light ch 99.9 2.3E-24 8E-29 161.2 12.4 220 18-237 12-281 (283)
86 3q15_A PSP28, response regulat 99.9 5E-24 1.7E-28 166.4 13.7 222 43-265 103-359 (378)
87 1qqe_A Vesicular transport pro 99.9 9.7E-24 3.3E-28 159.0 14.6 220 25-263 3-261 (292)
88 1hz4_A MALT regulatory protein 99.9 8.5E-23 2.9E-27 159.1 19.4 254 11-264 18-315 (373)
89 3e4b_A ALGK; tetratricopeptide 99.9 2.8E-23 9.5E-28 165.6 15.8 125 121-254 194-330 (452)
90 3e4b_A ALGK; tetratricopeptide 99.9 5.7E-23 1.9E-27 163.8 16.3 240 11-264 7-309 (452)
91 3gyz_A Chaperone protein IPGC; 99.9 3.3E-23 1.1E-27 139.8 10.6 120 123-242 19-138 (151)
92 2r5s_A Uncharacterized protein 99.9 1.1E-22 3.7E-27 141.9 13.5 163 8-201 7-171 (176)
93 3q7a_A Farnesyltransferase alp 99.9 3.8E-21 1.3E-25 145.3 21.8 232 20-251 67-346 (349)
94 2r5s_A Uncharacterized protein 99.9 2.9E-22 1E-26 139.7 14.1 168 37-236 2-172 (176)
95 3qou_A Protein YBBN; thioredox 99.9 1.6E-21 5.5E-26 146.4 18.9 170 36-236 112-283 (287)
96 2vsy_A XCC0866; transferase, g 99.9 1.9E-21 6.7E-26 159.5 20.2 165 20-215 2-169 (568)
97 2vsy_A XCC0866; transferase, g 99.9 1.2E-21 4.3E-26 160.7 17.9 165 54-249 2-169 (568)
98 3edt_B KLC 2, kinesin light ch 99.9 5.2E-23 1.8E-27 153.9 8.3 214 52-265 12-275 (283)
99 2vgx_A Chaperone SYCD; alterna 99.9 3.6E-22 1.2E-26 135.0 11.0 128 127-254 8-135 (148)
100 2ifu_A Gamma-SNAP; membrane fu 99.9 3.7E-22 1.3E-26 151.4 12.2 197 19-242 3-228 (307)
101 4gco_A Protein STI-1; structur 99.9 1.8E-21 6.1E-26 127.8 13.4 122 66-218 4-125 (126)
102 1p5q_A FKBP52, FK506-binding p 99.9 4.3E-23 1.5E-27 158.3 5.4 179 84-262 74-284 (336)
103 3dss_A Geranylgeranyl transfer 99.9 6.9E-20 2.4E-24 137.9 22.2 200 52-251 40-281 (331)
104 2c2l_A CHIP, carboxy terminus 99.9 2.1E-21 7.3E-26 145.3 13.6 194 8-203 5-199 (281)
105 3rjv_A Putative SEL1 repeat pr 99.9 4.4E-20 1.5E-24 132.4 19.8 186 24-250 3-208 (212)
106 3qou_A Protein YBBN; thioredox 99.9 7.3E-21 2.5E-25 142.8 16.3 152 113-264 124-277 (287)
107 3q7a_A Farnesyltransferase alp 99.9 4.8E-21 1.6E-25 144.7 14.5 222 43-264 56-324 (349)
108 4f3v_A ESX-1 secretion system 99.9 4.4E-21 1.5E-25 140.5 13.8 223 11-250 11-249 (282)
109 1hz4_A MALT regulatory protein 99.9 4.8E-20 1.6E-24 143.6 20.2 230 10-239 56-324 (373)
110 2xcb_A PCRH, regulatory protei 99.9 4.4E-21 1.5E-25 128.9 11.3 130 127-256 5-134 (142)
111 3gyz_A Chaperone protein IPGC; 99.9 5.5E-21 1.9E-25 129.0 10.3 119 59-208 20-138 (151)
112 1p5q_A FKBP52, FK506-binding p 99.8 1.3E-22 4.5E-27 155.6 2.3 205 15-237 73-294 (336)
113 1b89_A Protein (clathrin heavy 99.8 2.2E-21 7.4E-26 149.9 7.4 219 8-254 33-253 (449)
114 4f3v_A ESX-1 secretion system 99.8 5.8E-21 2E-25 139.9 9.1 171 14-216 54-249 (282)
115 2ifu_A Gamma-SNAP; membrane fu 99.8 8.2E-21 2.8E-25 144.0 10.3 192 53-265 3-218 (307)
116 3upv_A Heat shock protein STI1 99.8 8.1E-20 2.8E-24 120.1 13.8 119 137-255 1-125 (126)
117 2e2e_A Formate-dependent nitri 99.8 8.8E-20 3E-24 127.2 13.9 136 113-248 17-155 (177)
118 1dce_A Protein (RAB geranylger 99.8 3.2E-19 1.1E-23 145.2 18.4 184 56-260 44-244 (567)
119 2vgx_A Chaperone SYCD; alterna 99.8 6.1E-20 2.1E-24 124.0 11.0 121 61-212 7-127 (148)
120 1dce_A Protein (RAB geranylger 99.8 3.6E-20 1.2E-24 150.7 11.5 196 17-241 38-271 (567)
121 1xi4_A Clathrin heavy chain; a 99.8 3.3E-18 1.1E-22 146.9 23.4 223 13-254 1055-1326(1630)
122 2vyi_A SGTA protein; chaperone 99.8 4.4E-19 1.5E-23 117.0 14.4 124 136-259 8-131 (131)
123 1xi4_A Clathrin heavy chain; a 99.8 6.8E-19 2.3E-23 151.1 18.8 238 6-262 1104-1375(1630)
124 2c2l_A CHIP, carboxy terminus 99.8 2.4E-20 8.3E-25 139.5 9.0 195 38-237 1-199 (281)
125 2lni_A Stress-induced-phosphop 99.8 5.2E-19 1.8E-23 117.1 14.3 122 136-257 12-133 (133)
126 3sz7_A HSC70 cochaperone (SGT) 99.8 5.6E-19 1.9E-23 121.6 14.5 116 136-251 7-122 (164)
127 1hxi_A PEX5, peroxisome target 99.8 2.3E-19 7.9E-24 116.8 11.8 108 2-109 12-119 (121)
128 2fo7_A Synthetic consensus TPR 99.8 1.9E-18 6.6E-23 114.5 16.7 121 120-240 15-135 (136)
129 3rjv_A Putative SEL1 repeat pr 99.8 3.5E-19 1.2E-23 127.8 13.7 168 58-264 3-190 (212)
130 2qfc_A PLCR protein; TPR, HTH, 99.8 4.8E-18 1.7E-22 128.0 19.1 173 41-238 75-267 (293)
131 2fbn_A 70 kDa peptidylprolyl i 99.8 5.4E-20 1.8E-24 130.7 7.8 144 119-262 17-176 (198)
132 2fo7_A Synthetic consensus TPR 99.8 5.5E-18 1.9E-22 112.2 17.2 134 42-206 2-135 (136)
133 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 6.1E-21 2.1E-25 152.2 3.1 146 117-262 245-405 (457)
134 1b89_A Protein (clathrin heavy 99.8 3.7E-20 1.3E-24 143.1 7.0 235 8-263 62-303 (449)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.8 6.5E-18 2.2E-22 121.2 17.9 144 76-253 7-166 (213)
136 2xcb_A PCRH, regulatory protei 99.8 5E-19 1.7E-23 118.8 11.2 126 62-218 5-130 (142)
137 4gcn_A Protein STI-1; structur 99.8 9.6E-19 3.3E-23 114.9 11.9 109 140-249 8-123 (127)
138 1na0_A Designed protein CTPR3; 99.8 9.7E-18 3.3E-22 109.5 16.2 121 136-256 4-125 (125)
139 1a17_A Serine/threonine protei 99.8 1.4E-18 4.8E-23 119.6 12.7 124 113-236 20-145 (166)
140 3q49_B STIP1 homology and U bo 99.8 1.7E-18 5.7E-23 115.4 12.6 123 135-257 4-131 (137)
141 2e2e_A Formate-dependent nitri 99.8 9E-19 3.1E-23 122.0 11.2 137 10-177 13-152 (177)
142 2hr2_A Hypothetical protein; a 99.8 1.6E-18 5.6E-23 115.6 11.3 113 140-252 11-146 (159)
143 3rkv_A Putative peptidylprolyl 99.8 2E-18 6.9E-23 118.5 11.8 122 140-261 11-151 (162)
144 1hxi_A PEX5, peroxisome target 99.8 2.8E-18 9.7E-23 111.6 11.9 102 142-243 19-120 (121)
145 3mv2_B Coatomer subunit epsilo 99.8 1.7E-17 5.8E-22 123.2 17.3 230 9-246 15-291 (310)
146 1elw_A TPR1-domain of HOP; HOP 99.8 2.1E-17 7E-22 106.8 15.3 115 139-253 3-117 (118)
147 2qfc_A PLCR protein; TPR, HTH, 99.8 4.6E-17 1.6E-21 122.6 19.4 166 10-203 78-266 (293)
148 1hh8_A P67PHOX, NCF-2, neutrop 99.8 4.1E-17 1.4E-21 117.0 18.3 131 43-207 8-154 (213)
149 3u3w_A Transcriptional activat 99.8 2E-17 6.8E-22 124.6 16.8 167 46-237 80-266 (293)
150 3u3w_A Transcriptional activat 99.8 1.2E-17 3.9E-22 125.9 15.4 168 12-203 80-266 (293)
151 2fbn_A 70 kDa peptidylprolyl i 99.8 7.5E-19 2.6E-23 124.7 8.0 173 48-235 11-184 (198)
152 1a17_A Serine/threonine protei 99.8 3.2E-17 1.1E-21 112.7 15.4 125 140-264 13-139 (166)
153 3upv_A Heat shock protein STI1 99.8 3E-17 1E-21 107.7 14.3 117 73-220 2-124 (126)
154 2dba_A Smooth muscle cell asso 99.8 3.8E-17 1.3E-21 110.1 14.1 120 135-254 23-145 (148)
155 2hr2_A Hypothetical protein; a 99.7 2.4E-17 8.1E-22 110.0 11.9 104 9-112 13-139 (159)
156 2lni_A Stress-induced-phosphop 99.7 7.8E-17 2.7E-21 106.5 14.4 122 71-223 12-133 (133)
157 2xev_A YBGF; tetratricopeptide 99.7 7.9E-17 2.7E-21 106.0 13.8 116 142-257 4-125 (129)
158 2kck_A TPR repeat; tetratricop 99.7 3.1E-17 1.1E-21 105.0 11.5 107 136-242 2-111 (112)
159 1elr_A TPR2A-domain of HOP; HO 99.7 4.6E-17 1.6E-21 107.2 12.4 119 139-258 3-128 (131)
160 3mv2_B Coatomer subunit epsilo 99.7 5E-17 1.7E-21 120.6 13.3 181 26-211 85-290 (310)
161 3sz7_A HSC70 cochaperone (SGT) 99.7 1E-16 3.5E-21 110.2 14.1 118 71-219 7-124 (164)
162 4e6h_A MRNA 3'-END-processing 99.7 7.5E-16 2.6E-20 127.2 21.3 221 24-244 326-577 (679)
163 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 3.5E-18 1.2E-22 136.3 7.2 167 53-235 246-413 (457)
164 4b4t_Q 26S proteasome regulato 99.7 1.5E-16 5.2E-21 126.2 16.4 206 7-237 4-245 (434)
165 1wao_1 Serine/threonine protei 99.7 2.8E-18 9.6E-23 137.4 6.3 122 113-234 13-136 (477)
166 2vyi_A SGTA protein; chaperone 99.7 1.9E-16 6.5E-21 104.2 14.1 123 71-224 8-130 (131)
167 1wao_1 Serine/threonine protei 99.7 1.7E-17 5.9E-22 132.9 9.7 135 74-208 5-155 (477)
168 4gcn_A Protein STI-1; structur 99.7 6.1E-17 2.1E-21 106.3 10.6 98 10-107 11-115 (127)
169 2if4_A ATFKBP42; FKBP-like, al 99.7 2.1E-17 7.1E-22 126.8 9.3 156 40-243 178-334 (338)
170 3k9i_A BH0479 protein; putativ 99.7 2E-17 6.7E-22 107.1 7.6 108 153-260 3-113 (117)
171 3gw4_A Uncharacterized protein 99.7 1.3E-16 4.4E-21 113.4 12.4 101 140-240 66-179 (203)
172 1zu2_A Mitochondrial import re 99.7 6.3E-17 2.2E-21 107.7 9.3 92 116-207 12-124 (158)
173 1na0_A Designed protein CTPR3; 99.7 1.8E-15 6.1E-20 98.6 16.0 114 41-185 9-122 (125)
174 1zu2_A Mitochondrial import re 99.7 9.9E-17 3.4E-21 106.7 9.8 93 16-108 11-124 (158)
175 3q49_B STIP1 homology and U bo 99.7 5.1E-16 1.7E-20 103.2 13.4 105 37-172 5-109 (137)
176 1ihg_A Cyclophilin 40; ppiase 99.7 1E-16 3.4E-21 124.3 11.3 124 140-263 223-362 (370)
177 3rkv_A Putative peptidylprolyl 99.7 2.5E-16 8.4E-21 108.0 10.7 129 74-223 10-147 (162)
178 3gw4_A Uncharacterized protein 99.7 1.8E-16 6.2E-21 112.6 10.1 148 117-264 3-169 (203)
179 1elw_A TPR1-domain of HOP; HOP 99.7 2.3E-15 8E-20 97.0 14.3 98 121-218 19-116 (118)
180 2kck_A TPR repeat; tetratricop 99.7 1.7E-15 5.7E-20 96.8 13.0 104 6-109 5-111 (112)
181 2xev_A YBGF; tetratricopeptide 99.7 1.2E-15 4.1E-20 100.3 12.4 101 8-108 3-109 (129)
182 2if4_A ATFKBP42; FKBP-like, al 99.7 1.1E-16 3.6E-21 122.8 7.5 127 138-264 177-321 (338)
183 2dba_A Smooth muscle cell asso 99.7 6.6E-15 2.2E-19 99.0 15.2 116 37-183 24-142 (148)
184 3k9i_A BH0479 protein; putativ 99.7 2.3E-16 7.9E-21 102.0 7.1 95 118-212 2-99 (117)
185 4b4t_Q 26S proteasome regulato 99.6 1.5E-15 5E-20 120.5 12.3 210 41-264 4-238 (434)
186 2l6j_A TPR repeat-containing p 99.6 5E-15 1.7E-19 94.6 10.5 91 174-264 4-100 (111)
187 4e6h_A MRNA 3'-END-processing 99.6 1.6E-14 5.6E-19 119.3 16.1 207 57-263 325-562 (679)
188 1elr_A TPR2A-domain of HOP; HO 99.6 9E-15 3.1E-19 96.1 12.0 125 40-189 3-127 (131)
189 1ihg_A Cyclophilin 40; ppiase 99.6 6.1E-15 2.1E-19 114.3 12.1 141 75-230 223-363 (370)
190 3ro3_A PINS homolog, G-protein 99.6 7.3E-15 2.5E-19 100.2 8.7 100 141-240 50-161 (164)
191 3ro3_A PINS homolog, G-protein 99.6 1.5E-14 5E-19 98.7 9.2 140 41-205 9-160 (164)
192 2kat_A Uncharacterized protein 99.6 2.6E-14 9E-19 91.9 9.4 81 125-205 4-84 (115)
193 2uy1_A Cleavage stimulation fa 99.5 6.9E-12 2.4E-16 100.7 24.7 251 10-264 17-376 (493)
194 2l6j_A TPR repeat-containing p 99.5 6E-15 2.1E-19 94.2 5.6 95 139-233 3-103 (111)
195 1na3_A Designed protein CTPR2; 99.5 8.5E-14 2.9E-18 85.4 9.9 82 174-255 9-90 (91)
196 2kat_A Uncharacterized protein 99.5 3.2E-13 1.1E-17 86.8 11.8 101 157-257 2-104 (115)
197 1na3_A Designed protein CTPR2; 99.5 2.7E-13 9.3E-18 83.1 10.9 85 138-222 7-91 (91)
198 2kc7_A BFR218_protein; tetratr 99.5 2.5E-13 8.4E-18 84.8 8.5 93 10-110 3-96 (99)
199 3ma5_A Tetratricopeptide repea 99.5 4.2E-13 1.4E-17 83.9 9.3 70 170-239 3-72 (100)
200 2kc7_A BFR218_protein; tetratr 99.4 2.5E-13 8.5E-18 84.8 6.9 91 144-242 4-95 (99)
201 1klx_A Cysteine rich protein B 99.4 7.1E-12 2.4E-16 83.1 14.1 121 119-249 8-136 (138)
202 3ma5_A Tetratricopeptide repea 99.4 2.3E-12 7.9E-17 80.5 10.1 87 135-221 2-90 (100)
203 3ly7_A Transcriptional activat 99.3 2.3E-10 7.9E-15 86.7 18.8 156 31-208 184-344 (372)
204 3u64_A Protein TP_0956; tetrat 99.3 8E-11 2.8E-15 85.6 15.2 108 134-241 146-273 (301)
205 1klx_A Cysteine rich protein B 99.3 1E-10 3.6E-15 77.5 14.0 120 55-215 9-136 (138)
206 3n71_A Histone lysine methyltr 99.3 1.3E-11 4.6E-16 98.5 10.5 122 116-237 319-464 (490)
207 2uy1_A Cleavage stimulation fa 99.3 1.8E-09 6.2E-14 86.8 22.6 203 24-236 196-412 (493)
208 3ly7_A Transcriptional activat 99.3 1E-10 3.5E-15 88.5 14.3 121 121-242 214-344 (372)
209 3n71_A Histone lysine methyltr 99.3 1.1E-11 3.6E-16 99.1 7.3 118 147-264 316-457 (490)
210 3bee_A Putative YFRE protein; 99.2 2.1E-10 7.2E-15 70.1 11.1 71 170-240 2-75 (93)
211 1pc2_A Mitochondria fission pr 99.2 3.8E-10 1.3E-14 74.3 11.6 92 157-248 15-111 (152)
212 3bee_A Putative YFRE protein; 99.2 4.4E-10 1.5E-14 68.6 10.8 73 136-208 2-77 (93)
213 1pc2_A Mitochondria fission pr 99.1 1.3E-09 4.4E-14 71.8 10.8 98 120-217 12-114 (152)
214 2v5f_A Prolyl 4-hydroxylase su 99.1 1.6E-09 5.4E-14 67.9 9.6 76 174-249 5-87 (104)
215 3u64_A Protein TP_0956; tetrat 99.0 1.4E-08 4.6E-13 74.1 14.9 89 119-207 176-273 (301)
216 3qww_A SET and MYND domain-con 99.0 1.8E-09 6.3E-14 84.9 10.0 94 152-245 310-424 (433)
217 3qwp_A SET and MYND domain-con 99.0 6.5E-09 2.2E-13 81.9 12.0 109 147-255 294-426 (429)
218 2v5f_A Prolyl 4-hydroxylase su 98.9 1.5E-08 5.3E-13 63.3 10.5 77 139-215 4-87 (104)
219 4g26_A Pentatricopeptide repea 98.9 1.5E-06 5.2E-11 70.0 22.8 186 43-252 28-220 (501)
220 3qww_A SET and MYND domain-con 98.9 1.2E-08 4E-13 80.4 9.7 93 118-210 310-423 (433)
221 3qwp_A SET and MYND domain-con 98.8 1.1E-08 3.9E-13 80.5 8.9 106 115-220 296-425 (429)
222 4g26_A Pentatricopeptide repea 98.8 3.4E-06 1.1E-10 68.0 23.0 160 14-203 33-204 (501)
223 1nzn_A CGI-135 protein, fissio 98.8 2.4E-07 8.2E-12 58.8 11.4 96 155-250 16-116 (126)
224 4h7y_A Dual specificity protei 98.7 1.4E-06 4.7E-11 56.6 13.8 121 135-257 8-142 (161)
225 1nzn_A CGI-135 protein, fissio 98.6 8E-07 2.7E-11 56.4 10.4 96 122-217 17-117 (126)
226 3ffl_A Anaphase-promoting comp 98.6 5E-07 1.7E-11 59.9 9.2 99 3-101 16-148 (167)
227 4h7y_A Dual specificity protei 98.4 2.4E-05 8.1E-10 50.9 12.5 68 141-209 62-129 (161)
228 3ffl_A Anaphase-promoting comp 98.4 4.5E-06 1.5E-10 55.4 9.4 45 207-252 121-165 (167)
229 1y8m_A FIS1; mitochondria, unk 98.2 0.00013 4.5E-09 47.1 13.1 74 173-246 38-115 (144)
230 3o48_A Mitochondria fission 1 98.1 6.1E-05 2.1E-09 48.0 10.6 71 140-210 40-114 (134)
231 3o48_A Mitochondria fission 1 98.1 8.1E-06 2.8E-10 52.0 6.5 73 40-112 39-115 (134)
232 1y8m_A FIS1; mitochondria, unk 98.1 0.00032 1.1E-08 45.3 12.7 80 137-216 36-119 (144)
233 4gns_B Protein CSD3, chitin bi 97.7 0.00044 1.5E-08 58.0 11.1 115 119-234 261-397 (754)
234 4gns_B Protein CSD3, chitin bi 97.7 0.005 1.7E-07 51.8 17.3 123 53-200 260-397 (754)
235 3mkq_A Coatomer beta'-subunit; 97.6 0.0031 1.1E-07 53.9 16.2 128 116-259 662-800 (814)
236 1qsa_A Protein (soluble lytic 97.6 0.0059 2E-07 50.4 15.9 80 156-236 268-347 (618)
237 3txn_A 26S proteasome regulato 97.5 0.0043 1.5E-07 48.0 13.9 171 42-237 20-210 (394)
238 1zbp_A Hypothetical protein VP 97.5 0.0057 1.9E-07 44.2 12.8 63 14-76 4-66 (273)
239 3kae_A CDC27, possible protein 97.3 0.015 5.1E-07 38.8 14.6 92 11-107 37-146 (242)
240 1zbp_A Hypothetical protein VP 97.3 0.017 5.9E-07 41.8 13.7 121 115-242 6-134 (273)
241 3mkq_A Coatomer beta'-subunit; 97.3 0.038 1.3E-06 47.3 18.1 134 52-224 663-799 (814)
242 1ya0_A SMG-7 transcript varian 97.1 0.0047 1.6E-07 49.5 10.3 77 143-219 155-231 (497)
243 2ff4_A Probable regulatory pro 97.0 0.023 7.9E-07 44.2 13.2 60 177-236 174-233 (388)
244 3mkq_B Coatomer subunit alpha; 97.0 0.0087 3E-07 40.5 9.4 51 13-68 11-61 (177)
245 4b4t_R RPN7, 26S proteasome re 97.0 0.014 4.8E-07 46.1 12.0 100 140-239 131-239 (429)
246 3spa_A Mtrpol, DNA-directed RN 97.0 0.02 6.8E-07 49.7 13.3 96 142-237 129-230 (1134)
247 1ya0_A SMG-7 transcript varian 96.9 0.013 4.3E-07 47.0 10.7 74 113-186 159-232 (497)
248 2ff4_A Probable regulatory pro 96.8 0.018 6.2E-07 44.8 11.2 91 13-103 121-233 (388)
249 3mkq_B Coatomer subunit alpha; 96.8 0.056 1.9E-06 36.6 12.2 45 117-166 16-60 (177)
250 3txn_A 26S proteasome regulato 96.8 0.12 4.2E-06 40.1 20.3 180 10-189 22-235 (394)
251 4b4t_P 26S proteasome regulato 96.8 0.15 5E-06 40.5 20.1 60 11-71 21-86 (445)
252 3kae_A CDC27, possible protein 96.8 0.06 2.1E-06 36.0 19.5 204 15-241 10-241 (242)
253 4b4t_S RPN3, 26S proteasome re 96.5 0.028 9.5E-07 45.0 9.9 145 114-260 144-329 (523)
254 1qsa_A Protein (soluble lytic 96.4 0.35 1.2E-05 40.1 17.2 53 150-202 295-347 (618)
255 3spa_A Mtrpol, DNA-directed RN 96.2 0.17 5.8E-06 44.2 13.7 91 113-204 134-231 (1134)
256 4fhn_B Nucleoporin NUP120; pro 96.2 0.087 3E-06 47.1 12.6 113 146-262 818-958 (1139)
257 4fhn_B Nucleoporin NUP120; pro 96.1 0.76 2.6E-05 41.3 20.3 54 46-103 817-870 (1139)
258 4b4t_R RPN7, 26S proteasome re 96.1 0.025 8.5E-07 44.7 7.9 92 43-134 133-236 (429)
259 3lvg_A Clathrin heavy chain 1; 96.0 6.3E-08 2.2E-12 75.3 -23.1 219 7-253 54-274 (624)
260 4b4t_S RPN3, 26S proteasome re 95.8 0.035 1.2E-06 44.4 7.5 66 140-207 231-303 (523)
261 4ady_A RPN2, 26S proteasome re 94.8 0.88 3E-05 39.6 13.2 210 17-231 384-617 (963)
262 4b4t_P 26S proteasome regulato 94.6 0.46 1.6E-05 37.7 10.7 94 11-104 141-247 (445)
263 4ady_A RPN2, 26S proteasome re 93.4 3.8 0.00013 35.8 14.3 212 18-236 422-657 (963)
264 2wpv_A GET4, UPF0363 protein Y 92.8 2.3 7.9E-05 31.8 16.1 79 123-201 117-215 (312)
265 4gq2_M Nucleoporin NUP120; bet 92.1 5.8 0.0002 34.9 14.2 93 146-242 816-932 (950)
266 2wpv_A GET4, UPF0363 protein Y 92.0 3 0.0001 31.2 14.4 138 83-234 41-194 (312)
267 1wy6_A Hypothetical protein ST 91.0 2 6.7E-05 27.8 7.5 51 19-69 103-153 (172)
268 3lpz_A GET4 (YOR164C homolog); 90.4 4.6 0.00016 30.5 23.0 134 123-256 119-296 (336)
269 3lvg_A Clathrin heavy chain 1; 87.7 0.0048 1.6E-07 48.8 -7.3 171 9-194 146-324 (624)
270 2ijq_A Hypothetical protein; s 86.8 4.5 0.00015 26.9 7.4 61 10-70 35-104 (161)
271 4gq2_M Nucleoporin NUP120; bet 86.6 16 0.00056 32.2 14.7 112 46-169 815-926 (950)
272 3ax2_A Mitochondrial import re 85.5 3.1 0.0001 23.4 5.2 31 46-76 22-52 (73)
273 3t5v_B Nuclear mRNA export pro 85.1 4.2 0.00014 32.3 7.7 31 210-240 222-253 (455)
274 2cwy_A Hypothetical protein TT 82.8 4.7 0.00016 24.0 5.6 58 10-69 4-67 (94)
275 2rpa_A Katanin P60 ATPase-cont 82.6 1.5 5E-05 25.1 3.1 26 10-35 15-40 (78)
276 3t5x_A PCI domain-containing p 81.8 4.6 0.00016 28.1 6.1 53 174-226 14-71 (203)
277 3ax2_A Mitochondrial import re 80.1 6 0.0002 22.2 5.6 32 144-175 21-52 (73)
278 3esl_A Checkpoint serine/threo 78.8 14 0.00047 25.6 8.7 65 140-205 80-146 (202)
279 2crb_A Nuclear receptor bindin 76.8 3.6 0.00012 24.2 3.5 23 12-34 20-42 (97)
280 2crb_A Nuclear receptor bindin 76.4 5.1 0.00018 23.6 4.1 23 212-234 19-41 (97)
281 3t5x_A PCI domain-containing p 76.1 12 0.0004 26.0 6.8 33 141-173 15-47 (203)
282 3re2_A Predicted protein; meni 75.3 16 0.00053 28.0 7.4 28 208-235 296-323 (472)
283 3t5v_B Nuclear mRNA export pro 73.4 11 0.00038 29.9 6.7 89 119-207 139-254 (455)
284 1om2_A Protein (mitochondrial 72.2 5.5 0.00019 23.7 3.6 27 47-73 26-52 (95)
285 2cfu_A SDSA1; SDS-hydrolase, l 71.5 7 0.00024 32.8 5.5 49 42-90 450-498 (658)
286 3lpz_A GET4 (YOR164C homolog); 71.1 31 0.0011 26.1 22.1 134 73-222 134-296 (336)
287 2rpa_A Katanin P60 ATPase-cont 71.0 6.4 0.00022 22.5 3.6 25 212-236 16-40 (78)
288 2w2u_A Hypothetical P60 katani 70.5 5.5 0.00019 23.0 3.4 13 24-36 17-29 (83)
289 1om2_A Protein (mitochondrial 69.5 8.1 0.00028 23.0 3.9 29 11-39 24-52 (95)
290 3bu8_A Telomeric repeat-bindin 68.6 26 0.0009 24.5 6.8 64 23-86 88-159 (235)
291 2v6y_A AAA family ATPase, P60 68.2 6.5 0.00022 22.7 3.4 13 24-36 9-21 (83)
292 3u84_A Menin; MLL, JUND, ledgf 66.5 29 0.001 27.2 7.3 44 193-236 298-346 (550)
293 2w2u_A Hypothetical P60 katani 65.6 9.9 0.00034 22.0 3.8 21 216-236 27-47 (83)
294 2ynq_A ESSB; membrane protein, 63.5 29 0.001 22.9 6.2 85 11-99 12-97 (161)
295 2v6y_A AAA family ATPase, P60 62.5 12 0.00041 21.6 3.8 18 219-236 22-39 (83)
296 2cfu_A SDSA1; SDS-hydrolase, l 61.9 18 0.0006 30.5 6.1 45 11-55 453-497 (658)
297 2ijq_A Hypothetical protein; s 60.8 34 0.0012 22.7 8.0 60 144-203 36-104 (161)
298 1wy6_A Hypothetical protein ST 58.9 34 0.0012 22.2 14.6 56 182-237 99-154 (172)
299 3esl_A Checkpoint serine/threo 58.7 42 0.0015 23.2 12.6 79 161-240 58-147 (202)
300 3bu8_A Telomeric repeat-bindin 58.4 45 0.0015 23.4 7.3 35 183-217 123-157 (235)
301 3myv_A SUSD superfamily protei 57.1 29 0.00099 27.5 6.3 47 24-70 165-219 (454)
302 4gq4_A Menin; tumor suppressor 56.6 71 0.0024 25.1 9.5 44 193-236 283-331 (489)
303 2v6x_A Vacuolar protein sortin 55.8 15 0.00052 21.2 3.5 12 24-35 11-22 (85)
304 3re2_A Predicted protein; meni 55.6 69 0.0023 24.7 9.7 45 159-203 276-325 (472)
305 3bqo_A Telomeric repeat-bindin 55.6 12 0.00042 25.7 3.3 37 183-219 126-162 (211)
306 3lxu_X Tripeptidyl-peptidase 2 52.7 1.5E+02 0.005 27.6 11.9 133 123-256 1124-1331(1354)
307 3kez_A Putative sugar binding 51.6 34 0.0011 27.2 5.9 29 41-69 196-224 (461)
308 4aez_C MAD3, mitotic spindle c 49.2 67 0.0023 22.7 9.7 48 192-239 132-181 (223)
309 2cpt_A SKD1 protein, vacuolar 48.8 19 0.00065 22.4 3.3 13 23-35 15-27 (117)
310 3mcx_A SUSD superfamily protei 48.8 38 0.0013 27.1 5.8 47 24-70 177-231 (477)
311 3mv2_A Coatomer subunit alpha; 47.6 88 0.003 23.6 11.5 27 11-37 118-144 (325)
312 3lew_A SUSD-like carbohydrate 47.4 67 0.0023 25.8 7.1 30 42-71 204-233 (495)
313 2vkj_A TM1634; membrane protei 47.1 37 0.0013 19.8 3.9 24 12-35 58-81 (106)
314 2yhe_A SEC-alkyl sulfatase; hy 52.7 4.1 0.00014 34.2 0.0 47 10-56 464-510 (668)
315 3bqo_A Telomeric repeat-bindin 46.7 24 0.0008 24.4 3.6 42 145-186 122-163 (211)
316 4a5x_A MITD1, MIT domain-conta 46.5 41 0.0014 19.5 8.4 14 86-99 27-40 (86)
317 3ubw_A 14-3-3E, 14-3-3 protein 45.8 83 0.0029 22.8 13.5 59 40-98 30-90 (261)
318 3myv_A SUSD superfamily protei 44.8 75 0.0026 25.2 6.9 26 176-201 192-217 (454)
319 2qx5_A Nucleoporin NIC96; mRNA 44.4 1.4E+02 0.0049 25.1 9.2 31 210-241 538-570 (661)
320 4a1g_A Mitotic checkpoint seri 44.3 65 0.0022 21.1 8.8 49 192-240 83-133 (152)
321 4b4t_O 26S proteasome regulato 42.9 1.2E+02 0.004 23.6 9.7 25 177-201 130-154 (393)
322 3kez_A Putative sugar binding 42.3 83 0.0028 25.0 6.8 20 243-262 339-358 (461)
323 2cwy_A Hypothetical protein TT 40.6 56 0.0019 19.3 6.5 55 180-236 7-67 (94)
324 3u84_A Menin; MLL, JUND, ledgf 40.1 1.4E+02 0.0047 23.6 9.9 45 159-203 298-347 (550)
325 3lew_A SUSD-like carbohydrate 38.8 1E+02 0.0035 24.8 6.9 28 175-202 204-231 (495)
326 1wfd_A Hypothetical protein 15 38.4 60 0.0021 19.1 7.3 13 87-99 27-39 (93)
327 3mcx_A SUSD superfamily protei 37.8 92 0.0031 24.8 6.5 28 175-202 203-230 (477)
328 2dl1_A Spartin; SPG20, MIT, st 37.7 72 0.0025 19.8 5.3 16 56-71 18-33 (116)
329 1o9d_A 14-3-3-like protein C; 35.2 1.3E+02 0.0044 21.9 12.9 58 41-98 8-69 (260)
330 3hdx_A SUSD homolog, SUSD supe 34.1 1.3E+02 0.0044 24.0 6.8 29 42-70 198-226 (478)
331 3jq1_A SUSD superfamily protei 33.2 58 0.002 26.1 4.7 28 42-69 181-208 (481)
332 3qnk_A Putative lipoprotein; a 32.9 1.1E+02 0.0036 24.8 6.2 29 42-70 183-211 (517)
333 2npu_A FKBP12-rapamycin comple 32.9 94 0.0032 19.6 6.0 53 147-202 47-102 (126)
334 2yhe_A SEC-alkyl sulfatase; hy 37.2 10 0.00035 31.9 0.0 50 211-260 464-513 (668)
335 4gq4_A Menin; tumor suppressor 30.0 2.1E+02 0.007 22.7 10.1 64 140-203 262-332 (489)
336 4a1g_A Mitotic checkpoint seri 29.9 1.2E+02 0.0041 19.9 6.2 48 60-107 84-133 (152)
337 2uwj_G Type III export protein 29.7 96 0.0033 18.8 7.3 75 153-233 19-93 (115)
338 3qnk_A Putative lipoprotein; a 27.6 2E+02 0.0067 23.3 6.9 27 176-202 184-210 (517)
339 4b4t_O 26S proteasome regulato 27.5 2.1E+02 0.0073 22.1 10.0 56 48-103 83-155 (393)
340 3efz_A 14-3-3 protein; 14-3-3, 26.3 1.5E+02 0.005 21.7 5.2 47 191-237 169-226 (268)
341 3efz_A 14-3-3 protein; 14-3-3, 24.6 1.6E+02 0.0056 21.4 5.2 16 54-69 210-225 (268)
342 3eab_A Spastin; spastin, MIT, 24.2 61 0.0021 19.0 2.4 17 188-204 11-27 (89)
343 3mv2_A Coatomer subunit alpha; 23.7 2.4E+02 0.0081 21.3 13.5 100 144-243 118-242 (325)
344 4aez_C MAD3, mitotic spindle c 23.2 2E+02 0.0069 20.3 8.9 33 73-105 148-180 (223)
345 3i4g_A SUSD-like carbohydrate 23.0 2.1E+02 0.0073 23.2 6.3 29 42-70 199-227 (528)
346 3snx_A SUSD homolog, putative 23.0 89 0.003 24.9 4.0 30 41-70 191-220 (460)
347 3mkr_B Coatomer subunit alpha; 22.9 2.5E+02 0.0084 21.2 10.1 97 11-107 106-230 (320)
348 3jq1_A SUSD superfamily protei 22.7 1.5E+02 0.0052 23.7 5.3 20 243-262 362-381 (481)
349 2e2a_A Protein (enzyme IIA); h 22.6 1.3E+02 0.0043 18.3 3.7 28 208-235 20-47 (105)
350 1wcr_A PTS system, N, N'-diace 22.5 1.3E+02 0.0044 18.2 3.7 28 208-235 18-45 (103)
351 2p58_C Putative type III secre 22.4 1.4E+02 0.0048 18.1 9.8 76 152-233 19-94 (116)
352 3s6n_M SurviVal motor neuron p 21.5 75 0.0026 14.7 2.2 16 56-71 17-32 (37)
353 1g1e_B SIN3A; four-helix bundl 21.4 1.3E+02 0.0045 17.5 7.1 29 23-51 10-38 (89)
354 3ubw_A 14-3-3E, 14-3-3 protein 20.3 2.5E+02 0.0087 20.4 16.6 59 9-67 33-93 (261)
355 3snx_A SUSD homolog, putative 20.0 1.2E+02 0.004 24.2 4.1 27 210-236 193-219 (460)
No 1
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=1e-39 Score=254.11 Aligned_cols=262 Identities=39% Similarity=0.698 Sum_probs=244.5
Q ss_pred CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618 2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL 81 (265)
Q Consensus 2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 81 (265)
||......++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 139 (365)
T 4eqf_A 60 NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139 (365)
T ss_dssp CTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56667777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-------------hhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA-------------PPELSDSLYYADVARLFVEAARMSPE--DADVHIVL 146 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l 146 (265)
|.++...|++++|+..++++++..|+....+ +.++...|++++|+..++++++.+|. ++.++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999999999988765543 67899999999999999999999999 89999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE 226 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (265)
|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHHhCCcccccc
Q 024618 227 SVRYYVRALAMNPK------------ADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 227 A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
|+.+|++++++.|+ +..+|..++.++..+|+.+.+..
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999887 36789999999999999887654
No 2
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=6.5e-39 Score=249.58 Aligned_cols=263 Identities=43% Similarity=0.721 Sum_probs=248.6
Q ss_pred CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618 2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL 81 (265)
Q Consensus 2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 81 (265)
||......++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 138 (368)
T 1fch_A 59 NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138 (368)
T ss_dssp CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc------------------hhhhhhhhchHHHHHHHHHHHhcCCC--CHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIA------------------PPELSDSLYYADVARLFVEAARMSPE--DAD 141 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 141 (265)
|.++...|++++|+..+++++...|+....+ ...+...|++++|+..++++++.+|. ++.
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 9999999999999999999999999876443 22334899999999999999999999 899
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHhCCccccccc
Q 024618 222 GMYEESVRYYVRALAMNPKA-----------DNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 222 g~~~~A~~~~~~a~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
|++++|+..|++++++.|++ ..+|..++.++..+|++++|..+
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99999999999999999887 78999999999999999998754
No 3
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=100.00 E-value=1.6e-38 Score=243.43 Aligned_cols=264 Identities=40% Similarity=0.653 Sum_probs=251.2
Q ss_pred CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618 2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL 81 (265)
Q Consensus 2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 81 (265)
||......++.+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 95 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 56666777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh------------------hhhhhhchHHHHHHHHHHHhcCCCCHHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP------------------ELSDSLYYADVARLFVEAARMSPEDADVH 143 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 143 (265)
|.++...|++++|+..++++++..|.....+.. ++...|++++|+..++++++..|.++.++
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 999999999999999999999999998777622 48899999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (265)
..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHHhCCcccccccC
Q 024618 224 YEESVRYYVRALAMNPK------------ADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 224 ~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+++|+..++++++..|+ ++.++..++.++..+|++++|..+|
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999 7899999999999999999987654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=8.8e-39 Score=250.74 Aligned_cols=253 Identities=23% Similarity=0.226 Sum_probs=143.9
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 185 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33444444444444444444444444444444444444444445555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 92 AAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
++|+..|+++++.+|++...+ +.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555544333 55555555555555555555555666666666666666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618 169 LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248 (265)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 248 (265)
.+|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++..|++..++..+
T Consensus 266 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCccccccc
Q 024618 249 RISLRYAGRYPNRGDI 264 (265)
Q Consensus 249 ~~~~~~~~~~~~A~~~ 264 (265)
|.++...|++++|+..
T Consensus 346 ~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHHTTTCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 6666666666666543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.5e-39 Score=251.49 Aligned_cols=253 Identities=21% Similarity=0.232 Sum_probs=130.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
+++|+..|+++++..|++...+ +.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444443333 4444455555555555555555555555555555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHH
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|+++.++..
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCcccccc
Q 024618 248 LRISLRYAGRYPNRGD 263 (265)
Q Consensus 248 l~~~~~~~~~~~~A~~ 263 (265)
++.++...|++++|++
T Consensus 311 l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 311 LANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 5555555555555543
No 6
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=239.00 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=209.1
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
...+.+|..++..|++++|+..++++++.+|.++.++..++.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hh-hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 88 EL-EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 88 ~~-~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
.| ++++|+..++++++..|++...+ +.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88 78888888888888888776665 777888888888888888888888887788888888888888888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC---------CcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK---------PNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+++++..|.++.++..+|.++...|++++|+..+++++... |..+.++..+|.++...|++++|+.+++++
T Consensus 183 ~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888765 555677888888888888888888888888
Q ss_pred HhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 235 LAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
++.+|+++.++..+|.++...|++++|++.
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 888888888888888888888888877654
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=229.09 Aligned_cols=252 Identities=20% Similarity=0.162 Sum_probs=238.9
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
..+...+.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+.+++++++.+|.++.++..+|.++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA 136 (330)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 345668999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
..|++++|+..++++++..|+....+ +.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHH
Confidence 99999999999999999999977666 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC---------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 164 QTALKLK---------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 164 ~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+++++.. |..+.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+++++
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999986 6678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHH-HHhCCcc
Q 024618 235 LAMNPKADNAWQYLRISL-RYAGRYP 259 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~-~~~~~~~ 259 (265)
++++|+++.++..++.++ ...|+.+
T Consensus 297 l~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 4556543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=3.8e-36 Score=232.87 Aligned_cols=255 Identities=16% Similarity=0.158 Sum_probs=154.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHhcCC---CCCCCc---------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHP---KYGTIA---------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN 151 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~---~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (265)
++++|+..++++++..| ++...+ +..+...|++++|+..++++++..|.++.++..+|.++.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 66666666666666666 333222 244445555555555555555555555555555555555
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh---------------------------------------------
Q 024618 152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN--------------------------------------------- 186 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------------------- 186 (265)
..|++++|+..++++++..|.++.++..+|.++..
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554444
Q ss_pred -hcCcHHHHHHHHHHHhcCCcchh----hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618 187 -SVQSADAILAYQRALDLKPNYVR----AWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 187 -~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 261 (265)
.|++++|+..+++++...|+++. ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus 246 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 45555555555555555554432 2445666667777777777777777777776677777777777777777666
Q ss_pred ccc
Q 024618 262 GDI 264 (265)
Q Consensus 262 ~~~ 264 (265)
++.
T Consensus 326 ~~~ 328 (359)
T 3ieg_A 326 IQD 328 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.8e-36 Score=230.78 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=170.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC---ChHHHHhhh-----
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP---TNLEVLLSL----- 81 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l----- 81 (265)
++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+| +++.++..+
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666666655 444444444
Q ss_pred -------hhhhhhhhhHHHHHHHHHHHHhcCC----------------------------------CCCCCc---hhhhh
Q 024618 82 -------GVSHTNELEQAAALKYLYGWLRHHP----------------------------------KYGTIA---PPELS 117 (265)
Q Consensus 82 -------a~~~~~~~~~~~A~~~~~~~~~~~~----------------------------------~~~~~~---~~~~~ 117 (265)
|.++...|++++|+..++++++..| +++..+ +.++.
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444555555555555544444 444333 45555
Q ss_pred hhhchHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH----HHHHHH
Q 024618 118 DSLYYADVARLFVEAARMSPEDADVHI------------VLGVLYNLSRQYDKAIESFQTALKLKPQDYS----LWNKLG 181 (265)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~ 181 (265)
..|++++|+..++++++..|++..++. .+|.++...|++++|+..++++++..|+++. ++..+|
T Consensus 200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 555555555555555555555554332 2255556666666666666666666666653 355689
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+...+++
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-35 Score=237.12 Aligned_cols=253 Identities=14% Similarity=0.139 Sum_probs=156.5
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 45667777777788888887777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHhcCCCCC---CCc---------------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYG---TIA---------------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN 151 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~---~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (265)
++++|+..|+++++..|++. ..+ +..+...|++++|+..+++++...|.++.++..+|.++.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777654 222 333555666666666666666666666655555555555
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH------------HHHHH
Q 024618 152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM------------GISYA 219 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~ 219 (265)
..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+ |.++.
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555444433332 44444
Q ss_pred hcCCcHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHhCCccccc
Q 024618 220 NQGMYEESVRYYVRALAMNPKADN----AWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~~~~~~A~ 262 (265)
..|++++|+..|+++++..|+++. .+..+|.++.+.|++++|+
T Consensus 269 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 444444444444444444444321 3334444444444444443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.4e-35 Score=235.38 Aligned_cols=259 Identities=12% Similarity=0.109 Sum_probs=242.2
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH---HHHhhh--
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL---EVLLSL-- 81 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l-- 81 (265)
...++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++ .++..+
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999988 776655
Q ss_pred ----------hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618 82 ----------GVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV 148 (265)
Q Consensus 82 ----------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 148 (265)
|.++...|++++|+..++++++..|.+...+ +.++...|++++|+..++++++.+|.++.++..+|.
T Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 219 (450)
T 2y4t_A 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6669999999999999999999999887766 899999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHhhcCcHHHHHHHHHHHhcCCcch----hhHH
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKL------------GATQANSVQSADAILAYQRALDLKPNYV----RAWA 212 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~ 212 (265)
++...|++++|+..+++++...|+++..+..+ |.++...|++++|+..|++++...|.++ ..+.
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99999999999999999999999999887766 9999999999999999999999999975 4788
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 352 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998653
No 12
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=8.6e-36 Score=231.27 Aligned_cols=245 Identities=12% Similarity=0.062 Sum_probs=231.9
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc-HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDD-DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
+..+|.++...|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|+++++++|++..+|..+|.++...
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHH-----
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL-SRQYDKA----- 159 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A----- 159 (265)
|++++|+..|+++++++|++...+ +.++...|++++|+..++++++++|++..+|..+|.++.. .|..++|
T Consensus 180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999999999999999998888 9999999999999999999999999999999999999999 5655888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhc--CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC--------C-cHHHH
Q 024618 160 IESFQTALKLKPQDYSLWNKLGATQANSV--QSADAILAYQRALDLKPNYVRAWANMGISYANQG--------M-YEESV 228 (265)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~ 228 (265)
+..+++++.++|++..+|..+|.++...| ++++|+..++++ +.+|+++.++..+|.++..+| + +++|+
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~ 338 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 59999999999999999999999999988 799999999998 899999999999999999985 2 58999
Q ss_pred HHHHHH-HhcCCCCchhHHHHHHHHHHh
Q 024618 229 RYYVRA-LAMNPKADNAWQYLRISLRYA 255 (265)
Q Consensus 229 ~~~~~a-~~~~~~~~~~~~~l~~~~~~~ 255 (265)
++|+++ ++++|.....|..++..+...
T Consensus 339 ~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 339 ELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999 999999999999999988764
No 13
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-35 Score=215.50 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=227.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-------HHHHhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-------LEVLLSL 81 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l 81 (265)
.++.+|..++..|++++|+..++++++.+ .++.++..+|.++...|++++|+..++++++..|.+ +.++..+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 46788999999999999999999999999 899999999999999999999999999999998876 7899999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (265)
|.++...|++++|+..++++++..|. +.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999887 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC---
Q 024618 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMN--- 238 (265)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--- 238 (265)
.++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+++++++++
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCchhHHHHHHH
Q 024618 239 ---PKADNAWQYLRIS 251 (265)
Q Consensus 239 ---~~~~~~~~~l~~~ 251 (265)
|++..++..++.+
T Consensus 241 ~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 241 NNGSSAREIDQLYYKA 256 (258)
T ss_dssp HTTTTHHHHHHHHHHT
T ss_pred cCCCchHHHHHHHHHh
Confidence 8888888777765
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-34 Score=239.49 Aligned_cols=257 Identities=17% Similarity=0.149 Sum_probs=235.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.+..+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
|++++|+..|+++++..|.+...+ +..+...|++++|+..|+++++..|.+..++..++.++...|++++|+..|++
T Consensus 387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999998877666 88889999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc------CCcc-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL------KPNY-VRAWANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
+++..|.++.++..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+..++++++.+
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887 5554 6788999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCcccccccC
Q 024618 239 PKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
|+++.++..++.++...|++++|.+.|
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999987653
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.2e-35 Score=238.81 Aligned_cols=254 Identities=16% Similarity=0.151 Sum_probs=199.4
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCC-------------------------------------------------------------
Q 024618 89 LEQAAALKYLYGWLRHHPK------------------------------------------------------------- 107 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~------------------------------------------------------------- 107 (265)
|++++|+..|+ .+...|+
T Consensus 107 g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 98888887774 4443333
Q ss_pred -------------------------------------------------CCCCc----------hhhhhhhhchHHHHHH
Q 024618 108 -------------------------------------------------YGTIA----------PPELSDSLYYADVARL 128 (265)
Q Consensus 108 -------------------------------------------------~~~~~----------~~~~~~~~~~~~a~~~ 128 (265)
+...+ +..+...|++++|+..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 22111 3455556666777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618 129 FVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV 208 (265)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 208 (265)
+++++..+|+ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|.++
T Consensus 266 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 266 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 7777777776 667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777654
No 16
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=100.00 E-value=6.8e-35 Score=217.84 Aligned_cols=249 Identities=14% Similarity=0.107 Sum_probs=223.5
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH----HHHhhhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL----EVLLSLG 82 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la 82 (265)
...++..|..++..|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++ .|.++ .++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999 44443 4589999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
.++...|++++|+..++++++.+|.+...+ +.++...|++++|+..++++++.+|.++.++..+|......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777 99999999999999999999999999999999999555556699999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcC---Cc-----chhhHHHHHHHHHhcCCcHHHH
Q 024618 160 IESFQTALKLKPQDYSLWNKLGATQANSVQ---SADAILAYQRALDLK---PN-----YVRAWANMGISYANQGMYEESV 228 (265)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~g~~~~A~ 228 (265)
+..++++++.+|+++.++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.++...|++++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999 999999999999885 44 2368889999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 229 RYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
.+++++++++|+++.++..++.+....+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999998888766544
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=2.9e-35 Score=229.02 Aligned_cols=249 Identities=21% Similarity=0.236 Sum_probs=223.6
Q ss_pred HHHHcCChHHHHH-HHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 16 ELFRKGLLSEAVL-ALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 16 ~~~~~~~~~~A~~-~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
++...|++++|+. .+++++...|.++ ..++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 6677899999999 9999998888764 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHH
Q 024618 91 QAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHI----------------VLGVLYN 151 (265)
Q Consensus 91 ~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~l~~~~~ 151 (265)
+++|+..++++++.+|++...+ +.++...|++++|+..+++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 9999999999999999987766 89999999999999999999999998876654 456666
Q ss_pred HccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618 152 LSRQYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
..|++++|+..++++++.+|. ++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 230 YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
.|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999998653
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=5.9e-34 Score=205.72 Aligned_cols=207 Identities=21% Similarity=0.257 Sum_probs=146.2
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888888877765
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
.+... .......|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 86 ~~~~~--------------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 86 LYRQA--------------------EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HHHTC--------------------SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhh--------------------hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 53110 0122345777777777777777777777777777777777777777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
+++ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus 146 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777 7777777777777777777777777777777777777777777777777777777777777653
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-33 Score=227.77 Aligned_cols=248 Identities=17% Similarity=0.110 Sum_probs=236.3
Q ss_pred CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
....+...+.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+|+++++.+|.+..++..++.++
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF 417 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
...|++++|+..|+++++..|++...+ +..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..
T Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999887766 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh------CCCC-HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 163 FQTALKL------KPQD-YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 163 ~~~~~~~------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
|+++++. +|++ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|++++|++.|++++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999988 5654 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHH
Q 024618 236 AMNPKADNAWQYLRISLR 253 (265)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~ 253 (265)
+++|+++.++..++.+|.
T Consensus 578 ~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 578 AISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHCTTCHHHHHHHHHTTC
T ss_pred hcCCCChHHHHHHHHHHh
Confidence 999999999999998764
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=2.8e-35 Score=229.05 Aligned_cols=238 Identities=22% Similarity=0.190 Sum_probs=211.0
Q ss_pred HHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 28 LALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 28 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
..+.+.+...+.++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHccCHHHHHHHHHHHHhhC
Q 024618 104 HHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVL----------GVLYNLSRQYDKAIESFQTALKLK 170 (265)
Q Consensus 104 ~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~ 170 (265)
.+|++...+ +.++...|++++|+..++++++..|++...+..+ |.++...|++++|+..++++++.+
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 999987766 8999999999999999999999999876665554 999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618 171 PQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248 (265)
Q Consensus 171 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 248 (265)
|. ++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 99 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcccccccC
Q 024618 249 RISLRYAGRYPNRGDIF 265 (265)
Q Consensus 249 ~~~~~~~~~~~~A~~~~ 265 (265)
|.++..+|++++|+..|
T Consensus 288 ~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 288 GISCINLGAYREAVSNF 304 (365)
T ss_dssp HHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 99999999999998653
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=100.00 E-value=1e-34 Score=225.23 Aligned_cols=222 Identities=11% Similarity=0.087 Sum_probs=211.3
Q ss_pred HHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh-HHHHHHHHHHHHhcCCCCCCCc
Q 024618 34 VLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE-QAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
+..+|++..++..+|.++...|++++|+..++++++++|++..+|..+|.++...|+ +++|+..++++++++|++...+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 455677788999999999999999999999999999999999999999999999997 9999999999999999998888
Q ss_pred ---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hc
Q 024618 113 ---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN-SV 188 (265)
Q Consensus 113 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 188 (265)
+.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..++++++++|+++.+|+.+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred CcHHH-----HHHHHHHHhcCCcchhhHHHHHHHHHhcC--CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 189 QSADA-----ILAYQRALDLKPNYVRAWANMGISYANQG--MYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 189 ~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
..++| +.+|++++.++|++..+|..+|.++...| ++++|++.++++ +.+|+++.++..+|.++.++|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 55888 59999999999999999999999999988 699999999998 999999999999999999985
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-33 Score=200.76 Aligned_cols=204 Identities=16% Similarity=0.124 Sum_probs=174.6
Q ss_pred CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hh
Q 024618 38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PP 114 (265)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~ 114 (265)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++...+ +.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999999999999999986554 33
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
++...+. ..+. .....|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 82 ~~~~~~~-------------~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 82 AYVALYR-------------QAED----------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHH-------------TCSS----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhh-------------hhhh----------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 3332211 1111 2345699999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
..|+++++.+ +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999 899999999999999999999999999999999999999999999999999999998765
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=228.85 Aligned_cols=253 Identities=15% Similarity=0.114 Sum_probs=178.1
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.++.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 457788888889999999999999988888 5888888899999999999999999999988888888888888888888
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc--------------------------------------------------------
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA-------------------------------------------------------- 112 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 112 (265)
|++++|+..|++++...|......
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 888888888888888776332111
Q ss_pred --------------------------hhhhh---hhhchHHHHHHHHHHHh-----c--C-------CCCHHHHHHHHHH
Q 024618 113 --------------------------PPELS---DSLYYADVARLFVEAAR-----M--S-------PEDADVHIVLGVL 149 (265)
Q Consensus 113 --------------------------~~~~~---~~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~ 149 (265)
+..+. ..|++++|+..++++++ . . |.+..++..+|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 11122 25667777777777766 4 2 3334566666667
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618 150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
+...|++++|+..++++++..|. +.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 77777777777777766666666 66666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 230 YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
.++++++..|+++.++..+|.++...|++++|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655566666666666666555544
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-33 Score=225.14 Aligned_cols=258 Identities=12% Similarity=0.021 Sum_probs=238.7
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------------
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------------- 73 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------- 73 (265)
...++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++...|.
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 4457789999999999999999999999999999999999999999999999999999999988763
Q ss_pred ------------------------------------------------------------------hHHHHhhhhhhhhh
Q 024618 74 ------------------------------------------------------------------NLEVLLSLGVSHTN 87 (265)
Q Consensus 74 ------------------------------------------------------------------~~~~~~~la~~~~~ 87 (265)
++.++..+|.++..
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (514)
T 2gw1_A 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLY 198 (514)
T ss_dssp HHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 26666777777665
Q ss_pred ---hhhHHHHHHHHHHHHh-----c--CCCCC-------CCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024618 88 ---ELEQAAALKYLYGWLR-----H--HPKYG-------TIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLG 147 (265)
Q Consensus 88 ---~~~~~~A~~~~~~~~~-----~--~~~~~-------~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 147 (265)
.|++++|+..++++++ . .|++. ..+ +.++...|++++|+..+++++..+|. ..++..+|
T Consensus 199 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~ 277 (514)
T 2gw1_A 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMA 277 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHH
Confidence 8999999999999999 5 55542 122 88899999999999999999999999 99999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHH
Q 024618 148 VLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES 227 (265)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (265)
.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 228 VRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+..++++++..|+++.++..+|.++...|++++|+..|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999987653
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.9e-33 Score=226.62 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=222.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChH-------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 17 LFRKGLLSEAVLALEAEVLKNPENSE-------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 17 ~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
....|++++|+..++++++.+|+++. ++..+|.++...|++++|+..++++++.+|+ +.++..+|.++...|
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc
Confidence 33446899999999999999999865 4677888899999999999999999999998 899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
++++|+..++++++..|+++..+ +.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++
T Consensus 291 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999887766 889999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh------HHHHHHHHHhc----------CCcHHHHHH
Q 024618 167 LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA------WANMGISYANQ----------GMYEESVRY 230 (265)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~----------g~~~~A~~~ 230 (265)
++..|+++.++..+|.++...|++++|+..|+++++..|.+... +..+|.++... |++++|+..
T Consensus 371 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 99999999999999999999999999999999999988776543 45667888888 999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 231 YVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 231 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
|+++++.+|+++.++..+|.++...|++++|++.|
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999987653
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=100.00 E-value=1.1e-31 Score=197.03 Aligned_cols=221 Identities=17% Similarity=0.139 Sum_probs=180.6
Q ss_pred CCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh
Q 024618 5 VGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS 84 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 84 (265)
.....++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618 85 HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ 164 (265)
Q Consensus 85 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (265)
+...|++++|+..++++++ ..|.++.++..+|.++...|++++|+..++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~-------------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALR-------------------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHH-------------------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH-------------------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9888888777766655554 456678889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 024618 245 WQYLRISLRYAG 256 (265)
Q Consensus 245 ~~~l~~~~~~~~ 256 (265)
+..++.+....|
T Consensus 230 ~~~~~~l~~~~~ 241 (243)
T 2q7f_A 230 LHAKKLLGHHHH 241 (243)
T ss_dssp HHHHTC------
T ss_pred HHHHHHHHhhcc
Confidence 988887765544
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=100.00 E-value=8.1e-32 Score=206.11 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=216.2
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh------
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL------ 81 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 81 (265)
..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+...+..+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred --------hh-hhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618 82 --------GV-SHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL 149 (265)
Q Consensus 82 --------a~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 149 (265)
+. ++...|++++|+..++++++..|.+...+ +.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 77 78999999999999999999999877665 8899999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------------chhhHHHHHHH
Q 024618 150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN------------YVRAWANMGIS 217 (265)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~ 217 (265)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|. ++.++..+|.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHhcCCcHHHHHHHHHHHhcCCC
Q 024618 218 YANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 218 ~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
+..+|++++|...++++++..|+
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 99999999999999988876554
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=213.60 Aligned_cols=254 Identities=13% Similarity=0.066 Sum_probs=189.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHh---------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--------CC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLK---------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE--------PT 73 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~ 73 (265)
..+|.++...|++++|+..|+++++. +|....++.++|.+|..+|++++|+.++++++++. +.
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 35799999999999999999999875 46667788899999999999999999999998763 34
Q ss_pred hHHHHhhhhhhhhh--hhhHHHHHHHHHHHHhcCCCCCCCc---hhh---hhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618 74 NLEVLLSLGVSHTN--ELEQAAALKYLYGWLRHHPKYGTIA---PPE---LSDSLYYADVARLFVEAARMSPEDADVHIV 145 (265)
Q Consensus 74 ~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (265)
.+.++..+|.++.. .+++++|+.+|+++++.+|+++..+ +.+ +...++.++|+..++++++++|+++.++..
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 56778888776655 4579999999999999999887665 333 233455567777777777777777777777
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 146 LGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 146 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
+|..+.. .|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 7655543 356677777777777777777777777777777777777777777777777777777777777766442
Q ss_pred -------------------CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 222 -------------------GMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 222 -------------------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+.+++|+..++++++.+|.+..++..+|.++...|++++|+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHH
Confidence 2356677777777777777777777777777777777777654
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=100.00 E-value=4.7e-32 Score=202.62 Aligned_cols=250 Identities=14% Similarity=0.022 Sum_probs=219.7
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhC----CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKN----PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
+..+......|++++|+..++++++.. |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 9 EVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp GGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 445555667799999999999999874 4567799999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
..|++++|+..++++++.+|++...+ +.++...|++++|+..++++++..|++.......+.. ...|++++|+..+
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence 99999999999999999999988766 8999999999999999999999999998766666544 6679999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY----VRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
++++...|.+...+. ++.++...++.++|+..+++++...|.. +.++..+|.++...|++++|+..|+++++.+|
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 999999998876654 7777888899999999999999887743 68899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCcccccccC
Q 024618 240 KADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
++... .+.++..+|++++|++.|
T Consensus 247 ~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCHH---HHHHHHHHHHHHHC----
T ss_pred hhHHH---HHHHHHHHHHHHhhHHHH
Confidence 77543 477888999999988753
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.98 E-value=2.4e-31 Score=198.62 Aligned_cols=225 Identities=12% Similarity=0.066 Sum_probs=205.4
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC----c---
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI----A--- 112 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~--- 112 (265)
+++.++..|.+++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++ .|.++.. +
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999 5555554 2
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|......+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999955555569999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHHhCCcccc
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGM---YEESVRYYVRALAMN---PKA-----DNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~---~~~-----~~~~~~l~~~~~~~~~~~~A 261 (265)
|+..|+++++.+|+++.++..+|.++...|+ +++|+..++++++.. |+. ..++..+|.++...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999 999999999999886 442 26888899999999999999
Q ss_pred cccC
Q 024618 262 GDIF 265 (265)
Q Consensus 262 ~~~~ 265 (265)
++.|
T Consensus 241 ~~~~ 244 (272)
T 3u4t_A 241 DAAW 244 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=209.03 Aligned_cols=256 Identities=17% Similarity=0.133 Sum_probs=171.1
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhC--------CCChHHHHHHHHHHhh--cCcHHHHHHHHHHHHhcCCChHHHHh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKN--------PENSEGWRLLGIAHAE--NDDDQQAIAAMMRAHEAEPTNLEVLL 79 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~ 79 (265)
+..+|.++...|++++|+..+++++... +..+.++..+|.++.. .+++++|+.+|+++++++|+++.++.
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3467888888888888888888887652 3445677777766554 45688888888888888888888888
Q ss_pred hhhhhhhhh---hhHHHHHHHHHHHHhcCCCCCCCc-------hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618 80 SLGVSHTNE---LEQAAALKYLYGWLRHHPKYGTIA-------PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL 149 (265)
Q Consensus 80 ~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 149 (265)
.++.++... ++.++|+..++++++++|++.... +.+....+++++|...+++++..+|..+.++..+|.+
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 877776554 344667777777777777765544 2233344566667777777777777777777777777
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHH---------------------------------------------------
Q 024618 150 YNLSRQYDKAIESFQTALKLKPQDYSLWN--------------------------------------------------- 178 (265)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 178 (265)
+...|++++|+..++++++.+|+++.++.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 336 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh
Confidence 77777777777777777666666655544
Q ss_pred --HHHHHHHhhcCcHHHHHHHHHHHhcCCcchh---hHHHHHHH-HHhcCCcHHHHHHHHHHHhc---------------
Q 024618 179 --KLGATQANSVQSADAILAYQRALDLKPNYVR---AWANMGIS-YANQGMYEESVRYYVRALAM--------------- 237 (265)
Q Consensus 179 --~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~a~~~--------------- 237 (265)
.+|.++...|++++|+..|+++++..|++.. ++..+|.+ ....|++++|+..|++++++
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 4555566677788888888888877766532 34555544 44677788888888777765
Q ss_pred ---------CCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 238 ---------NPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 238 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+|+++.++..+|.++...|++++|+++|
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556678888888998889888888765
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.5e-31 Score=198.00 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=204.6
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCC-------CCc
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYG-------TIA 112 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~ 112 (265)
....+..+|.++...|++++|+.+++++++.+ .++.++..+|.++...|++++|+..++++++..|+.. ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46788999999999999999999999999999 8999999999999999999999999999999988763 222
Q ss_pred ---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618 113 ---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 113 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (265)
+.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999987 5667888999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 190 SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|++.|
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997653
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.98 E-value=8.5e-32 Score=211.88 Aligned_cols=257 Identities=16% Similarity=0.094 Sum_probs=225.8
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHH
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVL 78 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 78 (265)
.++..|..+...|++++|+..|++++...|.++ .++..+|.++...|++++|+.++++++.. .|....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 457889999999999999999999999999885 57889999999999999999999999887 34457799
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhc--------------------hHHHHHHH
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IA---PPELSDSLY--------------------YADVARLF 129 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~--------------------~~~a~~~~ 129 (265)
..+|.++...|++++|+..+++++...|.... .+ +.++...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998776443 22 888999999 99999999
Q ss_pred HHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhhcCcHHHHHHH
Q 024618 130 VEAARM------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS------LWNKLGATQANSVQSADAILAY 197 (265)
Q Consensus 130 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~ 197 (265)
++++.. .|....++..+|.++...|++++|+..++++++..|.... ++..+|.++...|++++|+..+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999876 3344568999999999999999999999999988665543 8999999999999999999999
Q ss_pred HHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCcccccccC
Q 024618 198 QRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 198 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
++++...|.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|++++|+..|
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999886654 6788899999999999999999999999885544 568889999999999999998653
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=1.7e-30 Score=195.44 Aligned_cols=227 Identities=13% Similarity=0.019 Sum_probs=143.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--CCChHHHHhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--EPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 88 (265)
+.+++.++..|++++|+..++. .+|....++..++..+...++.++|++.+++++.. +|+++.+++.+|.++...
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 3346666666666666665544 13434455566666666666677777777666654 466666667777777777
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHccCHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLG--VLYNLSRQYDKAIESF 163 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~ 163 (265)
|++++|+..+++ |.+...+ +.++...|++++|+..++++++.+|++.......+ .++...|++++|+..|
T Consensus 115 g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 115 QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 777777766665 4433333 66666667777777777777666666553333322 2333446677777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH-HHHHHHHHHhcCCCCc
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE-SVRYYVRALAMNPKAD 242 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~ 242 (265)
+++++..|+++.++..+|.++...|++++|+..+++++..+|+++.++.++|.++...|++.+ +..+++++++.+|+++
T Consensus 190 ~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 777766676666777777777777777777777777777777777777777777666776654 3466666777777665
Q ss_pred hhH
Q 024618 243 NAW 245 (265)
Q Consensus 243 ~~~ 245 (265)
.+.
T Consensus 270 ~~~ 272 (291)
T 3mkr_A 270 FIK 272 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 35
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.97 E-value=1.6e-30 Score=208.43 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=162.5
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH-HHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618 21 GLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD-QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99 (265)
Q Consensus 21 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (265)
+.+++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4477788888888888898999999999999999999 999999999999999999999999999999999999998888
Q ss_pred HHHhcCCCCCCCc---hhhhhhh---------hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------cCHHHH
Q 024618 100 GWLRHHPKYGTIA---PPELSDS---------LYYADVARLFVEAARMSPEDADVHIVLGVLYNLS--------RQYDKA 159 (265)
Q Consensus 100 ~~~~~~~~~~~~~---~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A 159 (265)
++++.+|+ ...+ +.++... |++++|+..++++++.+|+++.++..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88888776 2222 5666666 6677777777777777777777777777777666 667777
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHH
Q 024618 160 IESFQTALKLKP---QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 160 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (265)
+..|+++++++| .++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777666 66667777777777777777777777777777777666667777777777766666665543
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.97 E-value=2.4e-30 Score=194.64 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=215.4
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQ 91 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 91 (265)
..+..+..|+|++|+..++++...+|++ .+....++.+|...|++++|+..++. .+|....++..++..+...++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 4667789999999999999887777766 45778899999999999999988765 3666778899999999999999
Q ss_pred HHHHHHHHHHHhc--CCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 92 AAALKYLYGWLRH--HPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 92 ~~A~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
++|++.+++++.. +|+++..+ |.++...|++++|+..+++ |.++.++..+|.++...|++++|+..++++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999876 58877665 8999999999999999998 899999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHH--HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 167 LKLKPQDYSLWNKLG--ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 167 ~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
++.+|++.......+ .++...|++++|+..|+++++..|+++.++..+|.++..+|++++|+..++++++.+|+++.+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999865444333 334456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccc
Q 024618 245 WQYLRISLRYAGRYPNR 261 (265)
Q Consensus 245 ~~~l~~~~~~~~~~~~A 261 (265)
+.++|.++...|+.+++
T Consensus 237 l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 99999999999999764
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.97 E-value=7.5e-30 Score=179.63 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=149.5
Q ss_pred CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 024618 39 ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSD 118 (265)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 118 (265)
+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~---------------- 66 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV---------------- 66 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------
Confidence 4677888999999999999999999999999999999999999999888888777776555444
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
...|+++.++..+|.++...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+
T Consensus 67 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 67 ---------------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp ---------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 44566788888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 199 RALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
++++.+|.++.++..+|.++..+|++++|+.+|+++++++|+++
T Consensus 132 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 132 KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 99999999999999999999999999999999999999888754
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.97 E-value=1.8e-29 Score=186.41 Aligned_cols=210 Identities=14% Similarity=0.101 Sum_probs=174.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 90 EQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 90 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
++++|+..+++++. .| ..|.+..++..+|.++...|++++|+..++++++.
T Consensus 120 ~~~~A~~~~~~~~~-~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 120 RYEEAYQRLLEASQ-DT----------------------------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp CHHHHHHHHHHHTT-CT----------------------------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-Cc----------------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 76666666655554 11 46777889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 248 (265)
.|.++.++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++++..|+++.+...+
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776543
No 39
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.97 E-value=4.9e-31 Score=202.18 Aligned_cols=257 Identities=16% Similarity=0.099 Sum_probs=224.4
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHH
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVL 78 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 78 (265)
.++..|..++..|++++|+..++++++..|.++ .++..+|.++...|++++|+.++++++.. .|....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 456789999999999999999999999999984 57889999999999999999999999887 44557899
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhc--------------------hHHHHHHH
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IA---PPELSDSLY--------------------YADVARLF 129 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~--------------------~~~a~~~~ 129 (265)
..+|.++...|++++|+..++++++..+.... .+ +.++...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999998776543 22 888999999 99999999
Q ss_pred HHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHH
Q 024618 130 VEAARM------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAY 197 (265)
Q Consensus 130 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 197 (265)
++++.. .+....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+..+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 998876 23345689999999999999999999999999875543 238999999999999999999999
Q ss_pred HHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCcccccccC
Q 024618 198 QRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 198 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
++++...+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|...|
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999886654 6788899999999999999999999999876543 347889999999999999998653
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.97 E-value=1.8e-31 Score=210.58 Aligned_cols=256 Identities=18% Similarity=0.112 Sum_probs=224.6
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHHHHh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS----EGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLEVLL 79 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~ 79 (265)
++.+|..++..|++++|+..|+++++..|+++ .++..+|.++...|++++|+.+++++++. .|....++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 45789999999999999999999999999987 47889999999999999999999999988 566788999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhc-----------------hHHHHHHHHHHH
Q 024618 80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGT------IA---PPELSDSLY-----------------YADVARLFVEAA 133 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~-----------------~~~a~~~~~~~~ 133 (265)
.+|.++...|++++|+..+++++...+.... .+ +.++...|+ +++|+..+++++
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999987433221 22 889999999 999999999988
Q ss_pred hcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 134 RMS------PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYS------LWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 134 ~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
... +....++..+|.++...|++++|+..++++++..+.... ++..+|.++...|++++|+..+++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 763 333568999999999999999999999999998765433 89999999999999999999999999
Q ss_pred hcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCcccccccC
Q 024618 202 DLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 202 ~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
...+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++..+|++++|.+.|
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 887643 5788999999999999999999999999885543 358889999999999999998653
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.97 E-value=5.5e-29 Score=180.44 Aligned_cols=211 Identities=16% Similarity=0.108 Sum_probs=188.3
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.++.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 45677888888999999999999988888888888888899998899999999999999888888888888888888888
Q ss_pred -hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 89 -LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 89 -~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
|++++|+..++++++ .| ..|.+..++..+|.++...|++++|+..+++++
T Consensus 90 ~~~~~~A~~~~~~~~~-~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 90 LNRPAESMAYFDKALA-DP----------------------------TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp TCCHHHHHHHHHHHHT-ST----------------------------TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHc-Cc----------------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888877777666 22 246678899999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP-NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
+..|.++.++..+|.++...|++++|+..+++++...| .++..+..++.++...|++++|..+++.+.+.+|+++.+..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999 88999999999999999999999999999999999988765
Q ss_pred HH
Q 024618 247 YL 248 (265)
Q Consensus 247 ~l 248 (265)
.+
T Consensus 221 ~l 222 (225)
T 2vq2_A 221 VL 222 (225)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.97 E-value=1.9e-28 Score=172.46 Aligned_cols=171 Identities=22% Similarity=0.263 Sum_probs=158.5
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
.++++.|...+.+ ++..+|.+..++..+|.++...|++++|+..|++++
T Consensus 86 ~~~~~~a~~~~~~-------------------------------a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 86 IDEKQAAIDALQR-------------------------------AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp TTCHHHHHHHHHH-------------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-------------------------------HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 8887777765554 445567778999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 209 (265)
+.+|.++.++..+|.++..+|++++|+..|+++++.+|+++.
T Consensus 135 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 135 SIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999999998753
No 43
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.97 E-value=4e-28 Score=176.63 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=167.7
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNP-ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4567788888888888888888888888887 777788888888888888888888888888888888888888888877
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHccCHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA-------DVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A 159 (265)
..|++++| +..++++++.+|+++ .++..+|.++...|++++|
T Consensus 88 ~~~~~~~A-------------------------------~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 88 DMKNNQEY-------------------------------IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HTTCHHHH-------------------------------HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHH-------------------------------HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 77765444 466778899999888 6688889999999999999
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 160 IESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
+..|+++++.+|+ ++.++..+|.++...|+ ..++++..+.+..+..+ .+......+.+++|+.++++++++
T Consensus 137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998 88999999999876654 44666677666654433 444556677889999999999999
Q ss_pred CCCCchhHHHHHHHHH
Q 024618 238 NPKADNAWQYLRISLR 253 (265)
Q Consensus 238 ~~~~~~~~~~l~~~~~ 253 (265)
+|+++.+...++.+..
T Consensus 210 ~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 210 SPNRTEIKQMQDQVKA 225 (228)
T ss_dssp CTTCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999888887754
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.1e-27 Score=181.95 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhh-------cCcH-------HHHHHHHHHHHh-cCCChHHHHhhhhhhhhhh
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAE-------NDDD-------QQAIAAMMRAHE-AEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 88 (265)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5775 999999999999 7999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCC-Cc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGT-IA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL-SRQYDKAIESF 163 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~ 163 (265)
|++++|...|+++++..|.+.. .+ +.++...|++++|...|+++++..|....++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998875 45 8888899999999999999999999988888777666443 79999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc---CCc-chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL---KPN-YVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
+++++.+|+++.+|..+|.++...|++++|+..|++++.. .|+ ...+|..++..+...|+.++|...++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999995 553 677899999999999999999999999999999
Q ss_pred CCchh
Q 024618 240 KADNA 244 (265)
Q Consensus 240 ~~~~~ 244 (265)
++...
T Consensus 273 ~~~~~ 277 (308)
T 2ond_A 273 EEYEG 277 (308)
T ss_dssp TTTSS
T ss_pred ccccc
Confidence 86544
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.96 E-value=2.1e-27 Score=177.41 Aligned_cols=226 Identities=17% Similarity=0.199 Sum_probs=204.4
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLG 82 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la 82 (265)
...++.+|..+...|++++|+..|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 34567899999999999999999999998 7889999999999999 999999999999999985 789999999
Q ss_pred hhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618 83 VSHTN----ELEQAAALKYLYGWLRHHPKYGTIA---PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYN 151 (265)
Q Consensus 83 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (265)
.++.. .+++++|+..++++++.. ++..+ +.++.. .+++++|+.+++++++.. ++.++..+|.++.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 99999 999999999999999874 33333 788888 999999999999999876 5888999999999
Q ss_pred H----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh---
Q 024618 152 L----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN--- 220 (265)
Q Consensus 152 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 220 (265)
. .+++++|+..++++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.++..+|.++..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCC
Confidence 8 99999999999999987 468899999999999 9999999999999999866 7889999999999
Q ss_pred -cCCcHHHHHHHHHHHhcCCCCchh
Q 024618 221 -QGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 221 -~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
.+++++|+.+|+++++..|++...
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998865433
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.96 E-value=2.8e-27 Score=171.44 Aligned_cols=175 Identities=13% Similarity=-0.034 Sum_probs=157.8
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhc-CcHHHHHHHHHHHHh--cCCChHHHHhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEN-DDDQQAIAAMMRAHE--AEPTNLEVLLSLGVSH 85 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~ 85 (265)
.++.+|.++...|++++|+..+++++...|.++.++..+|.++... |++++|+..++++++ ..|.++.++..+|.++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999 999999999999999 6777889999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
...|++++|+..++++++ ..|.++.++..+|.++...|++++|+..+++
T Consensus 124 ~~~~~~~~A~~~~~~~~~-------------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLA-------------------------------AQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHTTCHHHHHHHHHHHHH-------------------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-------------------------------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999988887766665554 4566788899999999999999999999999
Q ss_pred HHhhCC-CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618 166 ALKLKP-QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214 (265)
Q Consensus 166 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 214 (265)
+++..| .++..+..++.++...|+.++|..+++.+....|+++.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999 9999999999999999999999999999999999988766544
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.96 E-value=1.1e-27 Score=177.74 Aligned_cols=202 Identities=14% Similarity=0.087 Sum_probs=168.7
Q ss_pred HhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC
Q 024618 35 LKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI 111 (265)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 111 (265)
...|.++..++.+|..++..|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--- 85 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--- 85 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC---
Confidence 4567788888899999999999999999999999888887 7888889999988888888888888888877753
Q ss_pred chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCHHHH------
Q 024618 112 APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL--------SRQYDKAIESFQTALKLKPQDYSLW------ 177 (265)
Q Consensus 112 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~------ 177 (265)
|..+.+++.+|.++.. .|++++|+..|+++++.+|+++.+.
T Consensus 86 -------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 140 (261)
T 3qky_A 86 -------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI 140 (261)
T ss_dssp -------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred -------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH
Confidence 3445677777888877 7888888888888888888776555
Q ss_pred -----------HHHHHHHHhhcCcHHHHHHHHHHHhcCCc---chhhHHHHHHHHHhc----------CCcHHHHHHHHH
Q 024618 178 -----------NKLGATQANSVQSADAILAYQRALDLKPN---YVRAWANMGISYANQ----------GMYEESVRYYVR 233 (265)
Q Consensus 178 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~ 233 (265)
+.+|.++...|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+..|++
T Consensus 141 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 141 RELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 88899999999999999999999999988 457899999999977 889999999999
Q ss_pred HHhcCCCCc---hhHHHHHHHHHHhCCccccccc
Q 024618 234 ALAMNPKAD---NAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 234 a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+++..|+++ .+...++.++..+++++++..+
T Consensus 221 ~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 221 LLQIFPDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 999999985 5667788888888888776543
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.96 E-value=4.4e-28 Score=181.06 Aligned_cols=219 Identities=12% Similarity=0.012 Sum_probs=195.5
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.++...
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
|++++|+..++++++..|++.... .......|++++|+..+.+++...|.+...+. ++.++...++.++|+..++++
T Consensus 125 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999987444 45557789999999999999999988766554 777888899999999999999
Q ss_pred HhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618 167 LKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 167 ~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
+...|.. +.++..+|.++...|++++|+..|++++..+|++... .+.++...|++++|++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 8876643 6889999999999999999999999999999977443 477889999999999887
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.96 E-value=6e-28 Score=177.10 Aligned_cols=195 Identities=20% Similarity=0.225 Sum_probs=163.9
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS 119 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (265)
.+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------------- 85 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---------------- 85 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------
Confidence 3557888999999999999999999999999999999999999999998888777766655554
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++
T Consensus 86 ---------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 86 ---------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp ---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ---------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..|
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998653
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=195.35 Aligned_cols=253 Identities=16% Similarity=0.064 Sum_probs=217.8
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HH
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKN------PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LE 76 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~ 76 (265)
.++.+|.++...|++++|+..+++++... |....++..+|.++...|++++|+.+++++++..|.. ..
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 35678999999999999999999998763 3446688999999999999999999999999986654 45
Q ss_pred HHhhhhhhhhhhhh--------------------HHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhchHHHHH
Q 024618 77 VLLSLGVSHTNELE--------------------QAAALKYLYGWLRHHPKYGT------IA---PPELSDSLYYADVAR 127 (265)
Q Consensus 77 ~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~a~~ 127 (265)
++..+|.++...|+ +++|+..+++++...+.... .+ +.++...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999999 99999999999886443322 11 889999999999999
Q ss_pred HHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHH
Q 024618 128 LFVEAARMSPEDA------DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 128 ~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
.++++++..|... .++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+.
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999998765433 389999999999999999999999999887655 6789999999999999999999
Q ss_pred HHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHhCCcccc
Q 024618 196 AYQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPK------ADNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 196 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A 261 (265)
.+++++...+.. ..++..+|.++...|++++|+.++++++++.+. ...++..++.++..+|+...+
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 999999875543 568889999999999999999999999987443 356888999999999987554
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.96 E-value=7.9e-27 Score=174.32 Aligned_cols=217 Identities=19% Similarity=0.178 Sum_probs=197.1
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----ELEQAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
+|.++.+++.+|.++...|++++|+.+|+++++ |+++.++..+|.++.. .+++++|+.+|+++++.. ++..+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 7888999999999999 999999999999999885 33333
Q ss_pred ---hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024618 113 ---PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLG 181 (265)
Q Consensus 113 ---~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 181 (265)
+.++.. .+++++|+..++++++. +++.++..+|.++.. .+++++|+..|+++++.. ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 888888 99999999999999987 479999999999999 999999999999999975 688999999
Q ss_pred HHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 182 ATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 182 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
.++.. .+++++|+.+|+++++.. ++.++..+|.++.. .+++++|+.+|+++++..| +.++..+|.++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 999999999999999874 57899999999999 9999999999999999865 789999999999
Q ss_pred H----hCCcccccccC
Q 024618 254 Y----AGRYPNRGDIF 265 (265)
Q Consensus 254 ~----~~~~~~A~~~~ 265 (265)
. .+++++|++.|
T Consensus 230 ~g~~~~~~~~~A~~~~ 245 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENF 245 (273)
T ss_dssp TTSSSSCCSTTHHHHH
T ss_pred cCCCcccCHHHHHHHH
Confidence 9 99999998753
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.96 E-value=7.8e-28 Score=192.86 Aligned_cols=193 Identities=15% Similarity=0.096 Sum_probs=184.0
Q ss_pred CCcchhhhHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 7 HPNPLKEGQELFRKGLL-SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
...++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++.+|+ ..++..+|.++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~ 180 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 34567899999999999 99999999999999999999999999999999999999999999999999 69999999999
Q ss_pred hhh---------hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhh--------hchHHHHHHHHHHHhcCC---CCHHH
Q 024618 86 TNE---------LEQAAALKYLYGWLRHHPKYGTIA---PPELSDS--------LYYADVARLFVEAARMSP---EDADV 142 (265)
Q Consensus 86 ~~~---------~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~a~~~~~~~~~~~~---~~~~~ 142 (265)
... |++++|+..++++++.+|++...+ +.++... |++++|+..|+++++.+| .++.+
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 999 999999999999999999988777 8888888 999999999999999999 99999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999876543
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.96 E-value=5.9e-28 Score=200.77 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=156.0
Q ss_pred hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618 36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE 115 (265)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 115 (265)
..|++++++..+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al------------- 70 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI------------- 70 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------
Confidence 4688899999999999999999999999999999999999999999999998888877776655544
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
+++|++..++..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+.
T Consensus 71 ------------------~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 71 ------------------RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp ------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 196 AYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
.|+++++++|+++.++.++|.++..+|++++|++.+++++++.|
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999988654
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.96 E-value=1.4e-27 Score=176.18 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=182.0
Q ss_pred hCCCC-hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh
Q 024618 36 KNPEN-SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP 114 (265)
Q Consensus 36 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 114 (265)
.+|.+ +.++..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..++++++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------- 99 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA----------- 99 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------
Confidence 34554 678999999999999999999999999999999999999999999998888777766655554
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK--LKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
..|.+..++..+|.++...|++++|+..+++++. ..|.++.++..+|.++...|++++
T Consensus 100 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 100 --------------------SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 4566788999999999999999999999999999 888889999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++..++.++...|++++|.+.
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 160 AKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998764
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.96 E-value=5e-27 Score=170.80 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=158.9
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
...++.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++..+..++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL 121 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQ 164 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (265)
..|. ++...|++++|+..++++++.+|+ ++.++..+|.++...|+ ..++
T Consensus 122 ~~g~------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~ 172 (228)
T 4i17_A 122 KEGQ------------------------KFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLR 172 (228)
T ss_dssp HHHH------------------------HHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHhH------------------------HHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHH
Confidence 7665 356789999999999999999999 99999999999977653 4567
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
++..+.+..+..+ .+......+.+++|+.+++++++++|+++.+...++.+..
T Consensus 173 ~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 173 KATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777777665443 4455667788999999999999999999998888887654
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.95 E-value=8.3e-27 Score=193.91 Aligned_cols=164 Identities=19% Similarity=0.301 Sum_probs=152.6
Q ss_pred cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618 70 AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL 149 (265)
Q Consensus 70 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 149 (265)
..|++++++.++|.++..+|++++|+..|+++ ++++|++..++.++|.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kA-------------------------------l~l~P~~~~a~~nLg~~ 52 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKA-------------------------------LEVFPEFAAAHSNLASV 52 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHCSCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHhCCCCHHHHHHHHHH
Confidence 46889999999999999999887777665555 45567779999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618 150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
+...|++++|+..|+++++++|+++.++.++|.++..+|++++|++.|+++++++|+++.++.++|.++..+|++++|+.
T Consensus 53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 230 YYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.|+++++++|+++.++.++|.++..+|++++|.+.
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999764
No 57
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.95 E-value=1.5e-25 Score=167.70 Aligned_cols=239 Identities=13% Similarity=0.046 Sum_probs=216.7
Q ss_pred hhHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC--cHHHHHHHHHHHHhcCCChHHHHhhhhhhh----
Q 024618 13 EGQELFRKGLL-SEAVLALEAEVLKNPENSEGWRLLGIAHAEND--DDQQAIAAMMRAHEAEPTNLEVLLSLGVSH---- 85 (265)
Q Consensus 13 ~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~---- 85 (265)
........|.+ ++|+..+.+++..+|++..+|...+.++...| ++++++.++..++..+|.+..+|...+.++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 34444566766 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhh---hhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Q 024618 86 TNE---LEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYA--DVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-- 155 (265)
Q Consensus 86 ~~~---~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 155 (265)
... +++++++..++++++.+|++..++ +.++...+.++ +++..+.++++.+|.+..+|...+.+....++
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 666 789999999999999999999888 77788888888 99999999999999999999999999999887
Q ss_pred ----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH-HHHHHHHHHhcC---CcchhhHHHHHHHHHhcCCcHHH
Q 024618 156 ----YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD-AILAYQRALDLK---PNYVRAWANMGISYANQGMYEES 227 (265)
Q Consensus 156 ----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 227 (265)
++++++++.+++..+|++..+|+.++.++...|+..+ ...++++++..+ |.++.++..++.++.+.|+.++|
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999999999999999999999999998665 455777777766 77889999999999999999999
Q ss_pred HHHHHHHHh-cCCCCchhHHHHHHH
Q 024618 228 VRYYVRALA-MNPKADNAWQYLRIS 251 (265)
Q Consensus 228 ~~~~~~a~~-~~~~~~~~~~~l~~~ 251 (265)
+++|+.+.+ .+|.....|...+..
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999997 799998888877654
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.95 E-value=3.7e-26 Score=169.58 Aligned_cols=208 Identities=12% Similarity=0.094 Sum_probs=175.2
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC---hHHHHhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPEN---SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT---NLEVLLS 80 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~ 80 (265)
...++.+|..++..|++++|+..|++++...|.+ +.+++.+|.++...|++++|+..|+++++..|+ .+.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3456899999999999999999999999999998 889999999999999999999999999999874 4678999
Q ss_pred hhhhhhh--------hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618 81 LGVSHTN--------ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL 152 (265)
Q Consensus 81 la~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (265)
+|.++.. .|++++|+..|+++++..|++.... .+. .......+.....++.+|.++..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----------~a~---~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-----------DAT---QKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-----------HHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-----------HHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999875432 111 11111112224557899999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhh----------cCcHHHHHHHHHHHhcCCcch---hhHHHHHH
Q 024618 153 SRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANS----------VQSADAILAYQRALDLKPNYV---RAWANMGI 216 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~ 216 (265)
.|++++|+..|+++++..|++ +.++..+|.++... |++++|+..|+++++..|+++ .+...++.
T Consensus 161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 240 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR 240 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999984 57899999999977 899999999999999999985 45566777
Q ss_pred HHHhcCCcHHHH
Q 024618 217 SYANQGMYEESV 228 (265)
Q Consensus 217 ~~~~~g~~~~A~ 228 (265)
++...++++++.
T Consensus 241 ~~~~~~~~~~~~ 252 (261)
T 3qky_A 241 ARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHhhhhh
Confidence 777777665543
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=3.1e-26 Score=173.98 Aligned_cols=207 Identities=9% Similarity=0.002 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHhhhhhhhhh-------hhhH-------HHHHHHHHHHHh-cCCCCCCCc---hhhhhhh
Q 024618 58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTN-------ELEQ-------AAALKYLYGWLR-HHPKYGTIA---PPELSDS 119 (265)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~~~~~~~~---~~~~~~~ 119 (265)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ..|++...+ +.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998864 3664 999999999999 799888766 8888999
Q ss_pred hchHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hcCcHHHHHHH
Q 024618 120 LYYADVARLFVEAARMSPEDAD-VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN-SVQSADAILAY 197 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~ 197 (265)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999887 999999999999999999999999999999998888877766443 79999999999
Q ss_pred HHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHHhCCccccccc
Q 024618 198 QRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM---NPK-ADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+++++..|+++.+|..+|.++...|++++|+..|++++.. .|+ ....|..++..+...|+.++|..+
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999996 553 677899999999999999887654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=4.7e-27 Score=185.39 Aligned_cols=233 Identities=16% Similarity=0.096 Sum_probs=204.3
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc------CCChHH
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLK------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA------EPTNLE 76 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 76 (265)
.++.+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+++++++. .|....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3567899999999999999999999987 4566779999999999999999999999999998 556678
Q ss_pred HHhhhhhhhhhhhh-----------------HHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhchHHHHHHHH
Q 024618 77 VLLSLGVSHTNELE-----------------QAAALKYLYGWLRHHPKYGT------IA---PPELSDSLYYADVARLFV 130 (265)
Q Consensus 77 ~~~~la~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~a~~~~~ 130 (265)
++..+|.++...|+ +++|+.+++++++..+.... .+ +.++...|++++|+..++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999 99999999999886543222 11 888999999999999999
Q ss_pred HHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 131 EAARMSPEDA------DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 131 ~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
++++..|... .++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.+++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998866433 388999999999999999999999999987644 6789999999999999999999999
Q ss_pred HHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 199 RALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 199 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
+++...+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999885543 4588999999999999999999999999987653
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.2e-26 Score=181.59 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=186.5
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHh---CCC---ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------hHHHH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLK---NPE---NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-------NLEVL 78 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~ 78 (265)
.+|..+...|++++|+..+++++.. .++ ...++..+|.++...|++++|+.++.+++++.+. ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4899999999999999999999986 232 3568899999999999999999999999987433 35689
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC------c---hhhhhhhhchHHHHHHHHHHHh-----cC-CCCHHHH
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI------A---PPELSDSLYYADVARLFVEAAR-----MS-PEDADVH 143 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~ 143 (265)
..+|.++...|++++|+.+++++++..+..... + |.++...|++++|+..++++++ .+ |..+.++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 999999999999999999999999886655421 1 8888889999999999999988 45 7778888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLK-----PQDYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
..+|.++...|++++|+..+++++... |.....+..+|.++...|+ +++|+..+++. ...|....++..+|
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 999999999999999999999988873 3333345678888888888 77788887776 33445566788899
Q ss_pred HHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 216 ISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
.+|...|++++|+.++++++++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887644
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.3e-27 Score=178.12 Aligned_cols=231 Identities=14% Similarity=0.102 Sum_probs=174.6
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCC
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLK--------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPT 73 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~ 73 (265)
++.+|..+...|++++|+..++++++. .|....++..+|.++...|++++|+.++++++.. .|.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 567899999999999999999999984 5666788999999999999999999999999987 356
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC-----CCCCC---Cc---hhhhhhhhchHHHHHHHHHHHhc-------
Q 024618 74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRHH-----PKYGT---IA---PPELSDSLYYADVARLFVEAARM------- 135 (265)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~---~~---~~~~~~~~~~~~a~~~~~~~~~~------- 135 (265)
...++..+|.++...|++++|+.+++++++.. ++.+. .+ +.++...|++++|+.++++++..
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999999999999999999999998874 22221 11 77788888888888888888876
Q ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---------CCHHH------HHHHHHHHHhhcCcHHHHHHHHH
Q 024618 136 -SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKP---------QDYSL------WNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 136 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~------~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
.|....++..+|.++...|++++|+..++++++..| ..... +...+..+...+.+.+|...+++
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 555667788888888888888888888888886532 22222 33333444455666677777888
Q ss_pred HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
+....|..+.++..+|.++...|++++|+.++++++++.|+
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 87788888889999999999999999999999999888764
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.1e-26 Score=177.90 Aligned_cols=232 Identities=16% Similarity=0.085 Sum_probs=197.1
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHh------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLK------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEV 77 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 77 (265)
+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..++++++..|.. ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 457899999999999999999999876 34446688999999999999999999999999875543 448
Q ss_pred Hhhhhhhhhhhhh--------------------HHHHHHHHHHHHhcCCCCCC------Cc---hhhhhhhhchHHHHHH
Q 024618 78 LLSLGVSHTNELE--------------------QAAALKYLYGWLRHHPKYGT------IA---PPELSDSLYYADVARL 128 (265)
Q Consensus 78 ~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~a~~~ 128 (265)
+..+|.++...|+ +++|+..+++++...+.... .+ +.++...|++++|+..
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999 99999999998876432221 11 8889999999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHH
Q 024618 129 FVEAARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILA 196 (265)
Q Consensus 129 ~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 196 (265)
++++++..+.. ..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999875432 2488999999999999999999999999886655 67889999999999999999999
Q ss_pred HHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC
Q 024618 197 YQRALDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 197 ~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
+++++...+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 99999876543 4588899999999999999999999999987753
No 64
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.94 E-value=3.3e-26 Score=155.31 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=129.3
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
|.++...|++++|+..+++++..+|.++..++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455556666666777777777788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH-HHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY-YVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999887765 599999999999999999999988886
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=2.7e-26 Score=179.58 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=189.8
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhc---CCC---hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEA---EPT---NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI----- 111 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----- 111 (265)
.++.+|.++...|++++|+.++++++++ .++ .+.++..+|.++...|++++|+.+++++++..+.....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445999999999999999999999987 233 46899999999999999999999999999987776541
Q ss_pred --c---hhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCH
Q 024618 112 --A---PPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALK-----LK-PQDY 174 (265)
Q Consensus 112 --~---~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~ 174 (265)
+ |.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+.+++++++ .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 1 889999999999999999999875432 25899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-----CcchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcCCCCchhHH
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALDLK-----PNYVRAWANMGISYANQGM---YEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
.++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +++|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 899999999999999999999999999874 3333446779999999999 88888888876 33444567888
Q ss_pred HHHHHHHHhCCcccccccC
Q 024618 247 YLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 247 ~l~~~~~~~~~~~~A~~~~ 265 (265)
.+|.++...|++++|..+|
T Consensus 344 ~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 9999999999999998653
No 66
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.93 E-value=2.5e-25 Score=185.57 Aligned_cols=184 Identities=12% Similarity=0.037 Sum_probs=154.2
Q ss_pred hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHH--------hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618 36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH--------EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK 107 (265)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 107 (265)
.+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..++++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4567777776666 67788888888888888 777888888888888888888888888888888888887
Q ss_pred CCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024618 108 YGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQ 184 (265)
Q Consensus 108 ~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 184 (265)
+...+ |.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|+++.+++++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 76655 7777778888888888888888889899999999999999999999 9999999999999999999999999
Q ss_pred HhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618 185 ANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223 (265)
Q Consensus 185 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (265)
...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999877665
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.93 E-value=9.7e-25 Score=156.35 Aligned_cols=179 Identities=14% Similarity=0.101 Sum_probs=136.0
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh----------------hhhhhhhhhhHHHHHHHHHHHHh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS----------------LGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
+++.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------------- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN------------- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-------------
Confidence 34556666666777777777777777777777766666665 5555555555
Q ss_pred cCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618 104 HHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT 183 (265)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 183 (265)
+++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 70 ------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 70 ------------------YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp ------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45555666666677888899999999999999999999999999999999999999999999
Q ss_pred HHhhcC--cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618 184 QANSVQ--SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251 (265)
Q Consensus 184 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 251 (265)
+...|+ ...+...+++++...|. ..+++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 987764 45677788877654333 3577889999999999999999999999999974 444445544
No 68
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=2.8e-24 Score=174.99 Aligned_cols=253 Identities=8% Similarity=-0.014 Sum_probs=173.8
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhh---
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGV--- 83 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~--- 83 (265)
...|+..+.. ...|++++|...|+++++..|.++.+|..++..+...|++++|...|++++...|+ ...|..++.
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~lw~~~~~~~~ 90 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHH
Confidence 3456777774 77899999999999999999999999999999999999999999999999999984 444433321
Q ss_pred ---------------------------------------hhh---------hhhhHHHHHHHHHHHHhcCCCCCC--Cc-
Q 024618 84 ---------------------------------------SHT---------NELEQAAALKYLYGWLRHHPKYGT--IA- 112 (265)
Q Consensus 84 ---------------------------------------~~~---------~~~~~~~A~~~~~~~~~~~~~~~~--~~- 112 (265)
... ..|+++.|...|+++++ .|.... .+
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~ 169 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWR 169 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHH
Confidence 111 15778888888888887 454321 00
Q ss_pred --hh----------------------------------------------------------h-----hhhh------hc
Q 024618 113 --PP----------------------------------------------------------E-----LSDS------LY 121 (265)
Q Consensus 113 --~~----------------------------------------------------------~-----~~~~------~~ 121 (265)
.. . .... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 00 0 0000 01
Q ss_pred ----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHH
Q 024618 122 ----YADVARLFVEAARMSPEDADVHIVLGVLYNL-------SRQYD-------KAIESFQTALK-LKPQDYSLWNKLGA 182 (265)
Q Consensus 122 ----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~l~~ 182 (265)
...++..|++++..+|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|+++.+|..+|.
T Consensus 250 ~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 329 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 1245567788888888888888888888775 67776 78888888886 67888888888888
Q ss_pred HHHhhcCcHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHhCCccc
Q 024618 183 TQANSVQSADAILAYQRALDLKPNYV-RAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS-LRYAGRYPN 260 (265)
Q Consensus 183 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~ 260 (265)
++...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|+..|+++++..|.....+...+.+ +...|+.++
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence 88888888888888888888877764 4676666666555555555555555555444433333333322 123444444
Q ss_pred cc
Q 024618 261 RG 262 (265)
Q Consensus 261 A~ 262 (265)
|.
T Consensus 410 A~ 411 (530)
T 2ooe_A 410 AF 411 (530)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.93 E-value=2.4e-25 Score=167.80 Aligned_cols=217 Identities=13% Similarity=0.088 Sum_probs=164.3
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hHHHHhhhhhhhhhhhhHHHHH
Q 024618 22 LLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NLEVLLSLGVSHTNELEQAAAL 95 (265)
Q Consensus 22 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~ 95 (265)
++++|+..|.++ |.++...|++++|+.+|.+++++.+. .+.++..+|.++...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366777777666 55677788888888888888876421 2567888888888888888888
Q ss_pred HHHHHHHhcCCCCCCC------c---hhhhhhh-hchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHH
Q 024618 96 KYLYGWLRHHPKYGTI------A---PPELSDS-LYYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 96 ~~~~~~~~~~~~~~~~------~---~~~~~~~-~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A 159 (265)
.++++++.+.|..... + +.++... |++++|+..|++++++.|.. ..++..+|.++...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 8888888877654331 1 6677775 88888888888888876643 46788999999999999999
Q ss_pred HHHHHHHHhhCCCCHH-------HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh-----HHHHHHHHH--hcCCcH
Q 024618 160 IESFQTALKLKPQDYS-------LWNKLGATQANSVQSADAILAYQRALDLKPNYVRA-----WANMGISYA--NQGMYE 225 (265)
Q Consensus 160 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~ 225 (265)
+..|+++++..|++.. ++..+|.++..+|++++|+..|++++.++|+.... +..++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999887653 57889999999999999999999999999886543 444566554 467799
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 226 ESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 226 ~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
+|+..|++++.++|.....+..+-..+
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999888777666665555
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=1.4e-23 Score=169.35 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=138.0
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh----hhhH
Q 024618 20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN----ELEQ 91 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~ 91 (265)
.+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++
T Consensus 164 ~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 44444444444444433 234444444444444 44444444444444442 234444455555443 4455
Q ss_pred HHHHHHHHHHHhcCCCCCCCc-hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----cCHHHHHH
Q 024618 92 AAALKYLYGWLRHHPKYGTIA-PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLS-----RQYDKAIE 161 (265)
Q Consensus 92 ~~A~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~ 161 (265)
++|+.+|+++++..+...... +.++.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.
T Consensus 240 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 240 TQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 555555555544322111111 444444 56666677777666543 4566667777777666 67777777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhc---CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHH
Q 024618 162 SFQTALKLKPQDYSLWNKLGATQANSV---QSADAILAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRA 234 (265)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a 234 (265)
.|+++.+. .++.++..+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 318 ~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 318 WYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 77777664 45667777777776644 667777777777765 456777777877777 77778888888877
Q ss_pred HhcCCCCchhHHHHHHHHHH----hCCccccccc
Q 024618 235 LAMNPKADNAWQYLRISLRY----AGRYPNRGDI 264 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 264 (265)
++. .++.++..+|.+|.. .+++++|+..
T Consensus 394 ~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 394 AEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 765 357777778887777 6777776654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=175.18 Aligned_cols=229 Identities=16% Similarity=0.121 Sum_probs=173.4
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC---
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH--- 105 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 105 (265)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999999999995 66778899999999999999999999999999873
Q ss_pred --CCCC---CCc---hhhhhhhhchHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 106 --PKYG---TIA---PPELSDSLYYADVARLFVEAARMS--------PEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 106 --~~~~---~~~---~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
++.+ ..+ +.++...|++++|+..++++++.. |....++..+|.++...|++++|+..+++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2222 222 778888888888888888888763 455677888888888888888888888888887
Q ss_pred --------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc---------c------hhhHHHHHHHHHhcCCcHH
Q 024618 170 --------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN---------Y------VRAWANMGISYANQGMYEE 226 (265)
Q Consensus 170 --------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~------~~~~~~l~~~~~~~g~~~~ 226 (265)
.|..+.++..+|.++...|++++|+..+++++...|. . ...+...+..+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 5556677888888888888888888888888865332 2 2233444555556667777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccccC
Q 024618 227 SVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 227 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
|...++++....|....++..+|.++...|++++|+++|
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 778888888888888999999999999999999998753
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.93 E-value=7.9e-25 Score=170.94 Aligned_cols=227 Identities=15% Similarity=0.078 Sum_probs=178.2
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------hHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNP------ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT-------NLE 76 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~ 76 (265)
++.+|..+...|++++|+..+++++...+ ....++..+|.++...|++++|+.+++++++..+. ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 35678899999999999999999987642 23458889999999999999999999999987432 256
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC---------chhhhhhhhchHHHHHHHHHHHh-----cCCCCHHH
Q 024618 77 VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI---------APPELSDSLYYADVARLFVEAAR-----MSPEDADV 142 (265)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 142 (265)
++..+|.++...|++++|+.+++++++..+..... +|.++...|++++|+..+++++. .+|..+.+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 78899999999999999999999999865432221 17778888888888888888888 67777788
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQ-----DYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANM 214 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l 214 (265)
+..+|.++...|++++|+..++++++..+. ....+..++.++...++ +.+|+..+++. ...|....++..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 888888888888888888888888887432 33455667777777777 77777777762 2334445677788
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhc
Q 024618 215 GISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
|.+|...|++++|+.+|+++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888888888888888765
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.9e-25 Score=186.27 Aligned_cols=186 Identities=16% Similarity=0.048 Sum_probs=171.6
Q ss_pred hcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHH--------hcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCC
Q 024618 69 EAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWL--------RHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSP 137 (265)
Q Consensus 69 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~ 137 (265)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++...+ +.++...|++++|+..++++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34677777777766 77899999999999999 8889888776 8999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|+++.+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618 218 YANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258 (265)
Q Consensus 218 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 258 (265)
+..+|++++|+..|+++++++|++..++..+|.++...++.
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999776653
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.93 E-value=3.4e-24 Score=150.43 Aligned_cols=173 Identities=24% Similarity=0.343 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (265)
...+..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------------- 70 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA----------------- 70 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------
Confidence 456777888888888888888888888888888888888888888888887777766555444
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++
T Consensus 71 --------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 71 --------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 455667888888999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
+...|.++.++..+|.++...|++++|+.+++++++..|++...
T Consensus 137 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 137 LGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 99999988999999999999999999999999999988876544
No 75
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=2e-23 Score=168.35 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=163.2
Q ss_pred cchhhhHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhh----cCcHHHHHHHHHHHHhcCCChHHHHhh
Q 024618 9 NPLKEGQELFR----KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAE----NDDDQQAIAAMMRAHEAEPTNLEVLLS 80 (265)
Q Consensus 9 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 80 (265)
..+.+|..+.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 116 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 34566777777 77888888888887765 567788888888877 77888888888887764 46677777
Q ss_pred hhhhhhh----hhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhh----hhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024618 81 LGVSHTN----ELEQAAALKYLYGWLRHHPKYGTIA---PPELSD----SLYYADVARLFVEAARMSPEDADVHIVLGVL 149 (265)
Q Consensus 81 la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 149 (265)
+|.+|.. .+++++|+.+|+++.... ++... +.++.. .+++++|+.+|+++.+. .++.++..+|.+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 8877776 677888888888777653 22222 555555 56777777777777764 457777777777
Q ss_pred HHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh-
Q 024618 150 YNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYAN- 220 (265)
Q Consensus 150 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 220 (265)
|.. .+++++|+..|+++.+. .++.++..+|.++.. .+++++|+.+|+++++. .++.+++.+|.++..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC
Confidence 776 67777777777777654 456666667766665 56666777777666654 334566666666666
Q ss_pred ---cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-----CCcccccc
Q 024618 221 ---QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA-----GRYPNRGD 263 (265)
Q Consensus 221 ---~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~ 263 (265)
.+++++|+.+|+++.+. .++.++..+|.++... +++++|+.
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 66666666666666544 3455666666666655 55555544
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.93 E-value=6.5e-24 Score=153.96 Aligned_cols=206 Identities=17% Similarity=0.039 Sum_probs=154.6
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH---HHhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE---VLLSL 81 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l 81 (265)
..++.+|..++..|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 4568899999999999999999999999998764 68999999999999999999999999999998764 78999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (265)
|.++...+.. .+.... ..+......|++++|+..|+++++..|+++.+...+..+....+
T Consensus 85 g~~~~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~------- 144 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQGFF--------GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD------- 144 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-------
T ss_pred HHHHHhhhhh-----hhhhhh--------ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------
Confidence 9998876532 111111 11344556778888888888888888887655433222111111
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch---hhHHHHHHHHHhcCCcHHHHHHHHHHHhcC
Q 024618 162 SFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV---RAWANMGISYANQGMYEESVRYYVRALAMN 238 (265)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 238 (265)
........+|.++...|++++|+..|+++++..|+++ .++..+|.++.++|++++|++.++++....
T Consensus 145 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 ----------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112345678888888999999999999888888765 678888999999999999999998888888
Q ss_pred CCCch
Q 024618 239 PKADN 243 (265)
Q Consensus 239 ~~~~~ 243 (265)
|++.+
T Consensus 215 ~~~~~ 219 (225)
T 2yhc_A 215 SNTLE 219 (225)
T ss_dssp SCCCC
T ss_pred CCchh
Confidence 87643
No 77
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.92 E-value=4.3e-25 Score=149.82 Aligned_cols=146 Identities=20% Similarity=0.225 Sum_probs=117.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHH
Q 024618 47 LGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVA 126 (265)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 126 (265)
||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~--------------------------- 55 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYIC--------------------------- 55 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHH---------------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------
Confidence 67777777888888888888888878777788888888877777766665554
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHH-HHHHHhcCC
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILA-YQRALDLKP 205 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~ 205 (265)
++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|
T Consensus 56 ----~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 56 ----TYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp ----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred ----HHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 444556677888999999999999999999999999999999999999999999999998877665 588999999
Q ss_pred cchhhHHHHHHHHHhcCC
Q 024618 206 NYVRAWANMGISYANQGM 223 (265)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~ 223 (265)
+++.++..++.++...|+
T Consensus 132 ~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 132 GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999998888888888775
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.92 E-value=1.1e-23 Score=157.68 Aligned_cols=211 Identities=8% Similarity=-0.011 Sum_probs=193.9
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh--hHHHHHHHHHHHHhcCCCCCCCc---hhhh----hhh---hch
Q 024618 55 DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL--EQAAALKYLYGWLRHHPKYGTIA---PPEL----SDS---LYY 122 (265)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~---~~~~----~~~---~~~ 122 (265)
...++|+..+.+++.++|++..+|...+.++...+ ++++++..++.++..+|++..++ +.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34468999999999999999999999999999999 99999999999999999999988 5555 444 789
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC------cHHHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD--KAIESFQTALKLKPQDYSLWNKLGATQANSVQ------SADAI 194 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~ 194 (265)
++++..+.++++.+|.+..+|...+.+....|.++ ++++.+.++++.+|.+..+|...+.+....+. +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999887 99999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH-HHHHHHHHHhcC---CCCchhHHHHHHHHHHhCCcccccccC
Q 024618 195 LAYQRALDLKPNYVRAWANMGISYANQGMYEE-SVRYYVRALAMN---PKADNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+++++++..+|++..+|..++.++...|+..+ ..+++.++++.+ |.++.++..++.++.+.|+.++|+++|
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998655 456777777776 788899999999999999999998754
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.92 E-value=2.9e-23 Score=150.53 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc----
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---- 112 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---- 112 (265)
++..++.+|..++..|++++|+..|+++++..|.+ +.+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999998876 47899999999999999999999999999988865321
Q ss_pred --hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCc
Q 024618 113 --PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQS 190 (265)
Q Consensus 113 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (265)
+.++...+ +.....+..++..+...|++++|+..|+++++..|+++.++..+..+....+
T Consensus 83 ~~g~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-- 144 (225)
T 2yhc_A 83 MRGLTNMALD----------------DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-- 144 (225)
T ss_dssp HHHHHHHHHH----------------C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhh----------------hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--
Confidence 22221111 1112223344455555778888888888888888887655433222111111
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhCCccccccc
Q 024618 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD---NAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
........+|.++...|++++|+..|+++++..|+++ .++..+|.++.++|++++|++.
T Consensus 145 ---------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 145 ---------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 1122346789999999999999999999999999986 6799999999999999999764
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.92 E-value=5.5e-24 Score=149.36 Aligned_cols=171 Identities=21% Similarity=0.259 Sum_probs=156.8
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.++.+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
|++++|+..+++++. ..|.++.++..+|.++...|++++|+..++++++
T Consensus 90 ~~~~~A~~~~~~~~~-------------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 90 QKYDLAVPLLIKVAE-------------------------------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp TCHHHHHHHHHHHHH-------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh-------------------------------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 988877766665554 4566788899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 169 LKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
..|.++.++..+|.++...|++++|+..++++++..|++...
T Consensus 139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 999999999999999999999999999999999998876543
No 81
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.3e-23 Score=169.62 Aligned_cols=218 Identities=12% Similarity=0.044 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhh-------cCcHH-------HHHHHHHHHHh-cCCChHHHHhhhhhhhhhh
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAE-------NDDDQ-------QAIAAMMRAHE-AEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 88 (265)
.+++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..++++++ ..|+++.+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999886 79977 99999999997 8999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCC-CCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCHHHHHHHH
Q 024618 89 LEQAAALKYLYGWLRHHPKYG-TIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVL-YNLSRQYDKAIESF 163 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~ 163 (265)
|++++|...|+++++..|.++ ..+ +..+...|++++|...|+++++..|.....+...+.+ +...|++++|...|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999875 234 7777789999999999999999999887777766655 34689999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh----hHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 164 QTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR----AWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
+++++..|+++.+|..++.++...|+.++|...|++++...|.++. +|...+......|+.+.+..+++++++..|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999998766554 788888888899999999999999999988
Q ss_pred CC
Q 024618 240 KA 241 (265)
Q Consensus 240 ~~ 241 (265)
++
T Consensus 495 ~~ 496 (530)
T 2ooe_A 495 EE 496 (530)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 82
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.92 E-value=8.7e-24 Score=151.39 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=145.9
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH----------------HHHHHhhcCcHHHHHHHHHHHHhcC
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRL----------------LGIAHAENDDDQQAIAAMMRAHEAE 71 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~ 71 (265)
..++.+|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 346789999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024618 72 PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYN 151 (265)
Q Consensus 72 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (265)
|+++.++..+|.++...|++++|+..|++++ +++|+++.++..+|.++.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------------------------~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKIL-------------------------------QLEADNLAANIFLGNYYY 133 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------------------HHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------HcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999877776655554 456777999999999987
Q ss_pred HccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 152 LSRQ--YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 152 ~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
..|+ ...+...+.+++...| ...+++.+|.++...|++++|+..|+++++++|+. .+...+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 7654 4566777777764322 23467888999999999999999999999999974 33333443
No 83
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.92 E-value=5e-24 Score=140.02 Aligned_cols=122 Identities=19% Similarity=0.298 Sum_probs=115.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 131 EAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
++..++|+....+..+|..++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457898899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
++.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998774
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.92 E-value=2.5e-22 Score=151.13 Aligned_cols=238 Identities=12% Similarity=0.032 Sum_probs=205.9
Q ss_pred HHHHHcCChH-HHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCChHHHHhhhhh
Q 024618 15 QELFRKGLLS-EAVLALEAEVLKNPENSEGWRLLGIAHAENDD----------DQQAIAAMMRAHEAEPTNLEVLLSLGV 83 (265)
Q Consensus 15 ~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~ 83 (265)
......|.++ +|+..+.+++..+|++..+|...+.+....+. +++++.++..++..+|.+..+|...+.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3345677776 79999999999999999999999999888776 789999999999999999999999999
Q ss_pred hhhhhhh--HHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----
Q 024618 84 SHTNELE--QAAALKYLYGWLRHHPKYGTIA---PPELSDSLY-YADVARLFVEAARMSPEDADVHIVLGVLYNLS---- 153 (265)
Q Consensus 84 ~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 153 (265)
+....+. +++++.++.++++.+|.+..++ +.+....|. +++++.++.+++..+|.+..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 9999884 8999999999999999999888 677777787 58999999999999999999999999998877
Q ss_pred ----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-----------cCcHHHHHHHHHHHhcCCcchhhHH
Q 024618 154 ----------RQYDKAIESFQTALKLKPQDYSLWNKLGATQANS-----------VQSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 154 ----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5689999999999999999999998776666655 5678999999999999999866555
Q ss_pred HHHHHHH---hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 213 NMGISYA---NQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 213 ~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
.++.+.. ..|..++...++.+.++++|....-|..++..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 5444332 357788999999999999998877776665544
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.92 E-value=2.3e-24 Score=161.22 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=150.6
Q ss_pred HHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc--------CCChHHHHhhh
Q 024618 18 FRKGLLSEAVLALEAEVLK--------NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA--------EPTNLEVLLSL 81 (265)
Q Consensus 18 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 81 (265)
...|++++|+..++++++. .|..+.++..+|.++...|++++|+.+++++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777777763 2556778999999999999999999999999987 36667899999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcC-----CCCC---CCc---hhhhhhhhchHHHHHHHHHHHhc--------CCCCHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHH-----PKYG---TIA---PPELSDSLYYADVARLFVEAARM--------SPEDADV 142 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~---~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 142 (265)
|.++...|++++|+.++++++... ++++ ..+ +.++...|++++|+..+++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988762 2221 111 66666666677777766666666 4445566
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHhhcCc------HHHHHHHHHHHhcCCcc
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKL---------KPQDYSLWNKLGATQANSVQS------ADAILAYQRALDLKPNY 207 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~ 207 (265)
+..+|.++...|++++|+..++++++. .+.....+..++......+.. .++...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 666667777777777777777666654 333445555555555543332 22333333333334555
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
+.++..+|.++..+|++++|+.+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777888888888888888888887764
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.91 E-value=5e-24 Score=166.41 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=188.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC------ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC-----
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEP------TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTI----- 111 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----- 111 (265)
.++.+|..+...|++++|+.++++++++.+ ..+.++..+|.++...|+++.|+.+++++++..+.....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 566789999999999999999999998732 246789999999999999999999999999987764431
Q ss_pred -----chhhhhhhhchHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHH
Q 024618 112 -----APPELSDSLYYADVARLFVEAARMSP------EDADVHIVLGVLYNLSRQYDKAIESFQTALK-----LKPQDYS 175 (265)
Q Consensus 112 -----~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 175 (265)
.|.++...|++++|+..+++++...+ ....++..+|.++...|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 18899999999999999999998633 1246789999999999999999999999999 6787789
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-----cchhhHHHHHHHHHhcCC---cHHHHHHHHHHHhcCCCCchhHHH
Q 024618 176 LWNKLGATQANSVQSADAILAYQRALDLKP-----NYVRAWANMGISYANQGM---YEESVRYYVRALAMNPKADNAWQY 247 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~ 247 (265)
++..+|.++...|++++|+.+++++++..+ .....+..++.++...|+ +.+|+.++++. ...|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999843 334456778888888888 88888888872 233444567888
Q ss_pred HHHHHHHhCCcccccccC
Q 024618 248 LRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 248 l~~~~~~~~~~~~A~~~~ 265 (265)
+|.++...|++++|...|
T Consensus 342 la~~y~~~g~~~~A~~~~ 359 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFY 359 (378)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 999999999999998754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.91 E-value=9.7e-24 Score=159.01 Aligned_cols=220 Identities=14% Similarity=0.055 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHhhc--C-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618 25 EAVLALEAEVLKNPENSEGWRLLGIAHAEN--D-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGW 101 (265)
Q Consensus 25 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (265)
+|..+++++-+.-+.....+ .++.. + ++++|+..|.++ |.++...|++++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 56777888877766543332 11232 2 599999999998 55788899999999999999
Q ss_pred HhcCCCCCC------Cc---hhhhhhhhchHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHH
Q 024618 102 LRHHPKYGT------IA---PPELSDSLYYADVARLFVEAARMSPED------ADVHIVLGVLYNLS-RQYDKAIESFQT 165 (265)
Q Consensus 102 ~~~~~~~~~------~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~ 165 (265)
+.+.+.... .+ |.++...|++++|+.++++++.+.|.. ..++..+|.++... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 998654322 11 888999999999999999999987643 46889999999996 999999999999
Q ss_pred HHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh-------hHHHHHHHHHhcCCcHHHHHHHH
Q 024618 166 ALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR-------AWANMGISYANQGMYEESVRYYV 232 (265)
Q Consensus 166 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 232 (265)
++++.|.. ..++..+|.++..+|++++|+..|++++...|.+.. ++..+|.++..+|++++|+.+|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99987754 467899999999999999999999999999887653 57889999999999999999999
Q ss_pred HHHhcCCCCchh-----HHHHHHHHH--HhCCcccccc
Q 024618 233 RALAMNPKADNA-----WQYLRISLR--YAGRYPNRGD 263 (265)
Q Consensus 233 ~a~~~~~~~~~~-----~~~l~~~~~--~~~~~~~A~~ 263 (265)
++++++|+.... +..++..+. ..+++++|+.
T Consensus 224 ~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~ 261 (292)
T 1qqe_A 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (292)
T ss_dssp GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999987653 344555553 3445655554
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.91 E-value=8.5e-23 Score=159.13 Aligned_cols=254 Identities=11% Similarity=-0.031 Sum_probs=207.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSE-----GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLL 79 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 79 (265)
+.+|..+...|++++|+..+++++...|.... ++..+|.++...|++++|...+++++...|.. ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 45788899999999999999999998876532 57789999999999999999999999875543 24578
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--------C---chhhhhhhhchHHHHHHHHHHHhcCCC-----CHHHH
Q 024618 80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGT--------I---APPELSDSLYYADVARLFVEAARMSPE-----DADVH 143 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 143 (265)
.+|.++...|++++|+..+++++...+.... . .+.++...|++++|...+++++...+. ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 8999999999999999999999987543221 1 177889999999999999999998764 24678
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHH-----HHHHHHHhhcCcHHHHHHHHHHHhcCCcc----hhhHH
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQ--DYSLWN-----KLGATQANSVQSADAILAYQRALDLKPNY----VRAWA 212 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ 212 (265)
..+|.++...|++++|...+++++...+. .+..+. .++.++...|++++|...+++++...|.. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 89999999999999999999999876332 222222 34456889999999999999998876643 23567
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCCccccccc
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
.+|.++...|++++|...+++++...+.. ..++..++.++...|++++|...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999999999999998865432 24777899999999999988764
No 89
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=2.8e-23 Score=165.57 Aligned_cols=125 Identities=13% Similarity=0.056 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HhhcCcHHH
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLS----RQYDKAIESFQTALKLKPQDYSLWNKLGAT-Q--ANSVQSADA 193 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A 193 (265)
++++|+.+|+++....|.....++.+|.+|... +++++|+..|+++. |.++.+++.+|.+ + ...+++++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 444555555555555444444444445444333 34455555555444 4444455555544 2 234444555
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHhcC-----CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 194 ILAYQRALDLKPNYVRAWANMGISYANQG-----MYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
+.+|+++.+. .++.+++.+|.+|. .| ++++|+.+|+++. |.++.+.+.||.+|..
T Consensus 271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 271 MKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 5555544432 23444444554444 33 4445555554444 4444444445544443
No 90
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=5.7e-23 Score=163.78 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=171.7
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH---HHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD---QQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..+|..++..|++++|+..|+++.+. .++.+++.+|.++...|+. ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56789999999999999999999775 4678889999999999988 8999999999876 77889999995555
Q ss_pred hh-----hHHHHHHHHHHHHhcCCCCCCCc-hhhhhhhh---------------------------------------ch
Q 024618 88 EL-----EQAAALKYLYGWLRHHPKYGTIA-PPELSDSL---------------------------------------YY 122 (265)
Q Consensus 88 ~~-----~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------------------~~ 122 (265)
.+ ++++|+.+|+++++..+...... +.++...+ ..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 44 88999999999988554332111 33333222 22
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh----cCcHHHHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSR---QYDKAIESFQTALKLKPQDYSLWNKLGATQANS----VQSADAIL 195 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~ 195 (265)
+++..+++.+...+| .+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+|... +++++|+.
T Consensus 162 ~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 162 DDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp HHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 333344444444444 48999999999999 999999999999999999999889999999766 79999999
Q ss_pred HHHHHHhcCCcchhhHHHHHHH-H--HhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC-----Cccccccc
Q 024618 196 AYQRALDLKPNYVRAWANMGIS-Y--ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG-----RYPNRGDI 264 (265)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~ 264 (265)
+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. +++.+++.||.+|. .| ++++|+..
T Consensus 239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999998 8999999999999 4 5789999999999999965 58999999999998 66 77777654
No 91
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.90 E-value=3.3e-23 Score=139.83 Aligned_cols=120 Identities=10% Similarity=-0.029 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
-.+...+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 33345567788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 203 LKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
++|+++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999864
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.90 E-value=1.1e-22 Score=141.91 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=95.6
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
...+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 34567777777777777777777777777777777777777777777777777777777777777 55444333322110
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
. .+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++
T Consensus 86 ~------------------------------~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 86 Q------------------------------QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp H------------------------------HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h------------------------------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0 0001123444455555555555555555555555555555555555555
Q ss_pred hhCCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 168 KLKPQD--YSLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 168 ~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
+.+|+. +.++..+|.++...|+.++|+..|++++
T Consensus 136 ~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 136 KVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 555543 3355555555555555555555555544
No 93
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.89 E-value=3.8e-21 Score=145.28 Aligned_cols=232 Identities=12% Similarity=0.032 Sum_probs=199.0
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh-h-hHHHHHH
Q 024618 20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND-DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE-L-EQAAALK 96 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~~~A~~ 96 (265)
.+..++|+..+.+++..+|++..+|...+.++...| .+++++.++.+++..+|.+..+|...+.++... + ++++++.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 455579999999999999999999999999999999 599999999999999999999999999999988 7 8999999
Q ss_pred HHHHHHhcCCCCCCCc---hhhhhhhhchH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-------HHH
Q 024618 97 YLYGWLRHHPKYGTIA---PPELSDSLYYA--------DVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-------YDK 158 (265)
Q Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 158 (265)
.+.++++.+|++..++ +.++...+.++ ++++.+.++++.+|.+..+|...+.++...++ +++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 9999999999998888 66777777777 99999999999999999999999999999887 799
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCc--------------------HHHHHHHHHHHhcC------CcchhhHH
Q 024618 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQS--------------------ADAILAYQRALDLK------PNYVRAWA 212 (265)
Q Consensus 159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~------~~~~~~~~ 212 (265)
+++++.+++..+|++..+|+.+..++...|.. ..-.......+... +..+.++.
T Consensus 227 ELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 227 ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 99999999999999999999999888887765 22223333222222 45677889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 024618 213 NMGISYANQGMYEESVRYYVRAL-AMNPKADNAWQYLRIS 251 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~ 251 (265)
.++.+|...|+.++|++.++... +.+|-....|...+..
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 99999999999999999999987 6788777777766654
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.89 E-value=2.9e-22 Score=139.69 Aligned_cols=168 Identities=12% Similarity=0.052 Sum_probs=143.0
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---------- 71 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---------- 71 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----------
Confidence 4555667889999999999999999999999999999999999999999999999999888877766554
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLY-NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
++.....++.+. ...++..+|+..++++++.+|+++.+++.+|.++...|++++|+.
T Consensus 72 ----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 72 ----------------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 343333334332 233445568999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcc--hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 196 AYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 196 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|+++++.+|+. +.++..+|.++...|+.++|+..|++++.
T Consensus 130 ~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 130 LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999976 56999999999999999999999999875
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.89 E-value=1.6e-21 Score=146.41 Aligned_cols=170 Identities=14% Similarity=0.058 Sum_probs=146.6
Q ss_pred hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhh
Q 024618 36 KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPE 115 (265)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 115 (265)
..|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--------- 182 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--------- 182 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---------
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---------
Confidence 34888899999999999999999999999999999999999999999999999999888887777666544
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAIL 195 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 195 (265)
+........+..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+.
T Consensus 183 ----------------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~ 240 (287)
T 3qou_A 183 ----------------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE 240 (287)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 3344555666667788888888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcc--hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 196 AYQRALDLKPNY--VRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 196 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|++++..+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999988887 77888899999999998899988888775
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.89 E-value=1.9e-21 Score=159.52 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=131.5
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHH
Q 024618 20 KGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLY 99 (265)
Q Consensus 20 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (265)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999998888877776665
Q ss_pred HHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024618 100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNK 179 (265)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 179 (265)
++++ .+|++..++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 82 ~al~-------------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 82 QASD-------------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp HHHH-------------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHh-------------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5544 466678899999999999999999999999999999999999999
Q ss_pred HHHHHHhh---cCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 180 LGATQANS---VQSADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 180 l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
+|.++... |++++|+..++++++.+|.+...+..++
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999 9999999999999999999888877776
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.88 E-value=1.2e-21 Score=160.67 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=133.4
Q ss_pred cCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHH
Q 024618 54 NDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAA 133 (265)
Q Consensus 54 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 133 (265)
.|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------------- 50 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL------------------------------- 50 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------
Confidence 4789999999999999999999999999999999888877776655554
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH
Q 024618 134 RMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN 213 (265)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 213 (265)
+.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 51 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 130 (568)
T 2vsy_A 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130 (568)
T ss_dssp TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---CCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618 214 MGISYANQ---GMYEESVRYYVRALAMNPKADNAWQYLR 249 (265)
Q Consensus 214 l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 249 (265)
+|.++..+ |++++|++.++++++.+|++...+..++
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999 9999999999999999998766655443
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.88 E-value=5.2e-23 Score=153.85 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=151.0
Q ss_pred hhcCcHHHHHHHHHHHHhc--------CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC-----CCCCC---Cc---
Q 024618 52 AENDDDQQAIAAMMRAHEA--------EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH-----PKYGT---IA--- 112 (265)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~---~~--- 112 (265)
...|++++|+.+++++++. .|..+.++..+|.++...|++++|+..+++++... ++.+. .+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467777777777777763 35678899999999999999999999999998763 22221 11
Q ss_pred hhhhhhhhchHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHH
Q 024618 113 PPELSDSLYYADVARLFVEAARM--------SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL--------KPQDYSL 176 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ 176 (265)
+.++...|++++|+..+++++.. +|....++..+|.++...|++++|+..++++++. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777778888888888877776 3555677777888888888888888888888776 5555667
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHhc---------CCcchhhHHHHHHHHHhcCCc------HHHHHHHHHHHhcCCCC
Q 024618 177 WNKLGATQANSVQSADAILAYQRALDL---------KPNYVRAWANMGISYANQGMY------EESVRYYVRALAMNPKA 241 (265)
Q Consensus 177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~a~~~~~~~ 241 (265)
+..+|.++...|++++|+..+++++.. .+.....+..++..+...+.. .++...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 777888888888888888888877765 333445666666666554443 33333333333334555
Q ss_pred chhHHHHHHHHHHhCCcccccccC
Q 024618 242 DNAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
..++..+|.++...|++++|+..|
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678999999999999999998653
No 99
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.88 E-value=3.6e-22 Score=134.95 Aligned_cols=128 Identities=16% Similarity=0.040 Sum_probs=118.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
..+++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
++.+++.+|.++..+|++++|+..|+++++++|+++........+...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999988765554444433
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.88 E-value=3.7e-22 Score=151.43 Aligned_cols=197 Identities=14% Similarity=0.080 Sum_probs=126.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCC-----------hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHhhh
Q 024618 19 RKGLLSEAVLALEAEVLKNPEN-----------SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLLSL 81 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 81 (265)
..|++++|..+++++.+..+.. ...+...|.++...|++++|+.+|.+++++.+.. ..++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4577888888888887654421 0133344566666666666666666666654321 3455566
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIE 161 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 161 (265)
|.++...|++++|+.+|++++.+.+.... .. ....++..+|.++.. |++++|+.
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------~~--------------~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGT-----------PD--------------TAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----------HH--------------HHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----------HH--------------HHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66666666666666666655554322110 00 013466777777777 88888888
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCCcHHHHH
Q 024618 162 SFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
+|++++.+.|.. ..++..+|.++..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888887765543 4567777888888888888888888887765443 2366677777777788888888
Q ss_pred HHHHHHhcCCCCc
Q 024618 230 YYVRALAMNPKAD 242 (265)
Q Consensus 230 ~~~~a~~~~~~~~ 242 (265)
+|++++ ++|+..
T Consensus 217 ~~~~al-~~p~~~ 228 (307)
T 2ifu_A 217 CVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHT-TSTTST
T ss_pred HHHHHh-CCCCCC
Confidence 888888 777654
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=1.8e-21 Score=127.78 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=107.1
Q ss_pred HHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618 66 RAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIV 145 (265)
Q Consensus 66 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (265)
++..++|+.+..+..+|..++..|++++|+..|+++ ++.+|.++.++..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~a-------------------------------l~~~p~~~~~~~~ 52 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEA-------------------------------VKRDPENAILYSN 52 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHCTTCHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HHhCCCCHHHHHH
Confidence 345678888899999999998888887777665554 4556778999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (265)
+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus 53 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 53 RAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888763
No 102
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.87 E-value=4.3e-23 Score=158.29 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=145.8
Q ss_pred hhhhhhhHHHHHHHHHH----HHhcCCCCCCCc-hhhh------------hhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q 024618 84 SHTNELEQAAALKYLYG----WLRHHPKYGTIA-PPEL------------SDSLYYADVARLFVEAARMSPEDADVHIVL 146 (265)
Q Consensus 84 ~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~-~~~~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 146 (265)
++...+.+++|+..+.. ++.+.|+..... +... ...+++++|+..+++++...|....++..+
T Consensus 74 ~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~ 153 (336)
T 1p5q_A 74 NLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER 153 (336)
T ss_dssp GGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHH
Confidence 33334556666666666 555555542111 1111 245667777778888888888888999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618 147 GVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 211 (265)
|.++...|++++|+..|++++...|.+ ..++.++|.++...|++++|+..|+++++++|+++.++
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 233 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999999999999999988 58899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
+.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888773
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.87 E-value=6.9e-20 Score=137.87 Aligned_cols=200 Identities=12% Similarity=0.023 Sum_probs=177.4
Q ss_pred hhcCcHH-HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh----------HHHHHHHHHHHHhcCCCCCCCc---hhhhh
Q 024618 52 AENDDDQ-QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE----------QAAALKYLYGWLRHHPKYGTIA---PPELS 117 (265)
Q Consensus 52 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~---~~~~~ 117 (265)
...|.++ +|+..+.+++..+|++..+|...+.+....+. +++++.+++.++..+|++..++ +.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456655 89999999999999999999999999988776 6899999999999999999988 67777
Q ss_pred hhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-------
Q 024618 118 DSL--YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ-YDKAIESFQTALKLKPQDYSLWNKLGATQANS------- 187 (265)
Q Consensus 118 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 187 (265)
..+ .+++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 777 48999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred -------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc-----------CCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618 188 -------VQSADAILAYQRALDLKPNYVRAWANMGISYANQ-----------GMYEESVRYYVRALAMNPKADNAWQYLR 249 (265)
Q Consensus 188 -------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 249 (265)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.+++++++.|++...+..++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 5689999999999999999999998776666665 4689999999999999999855544444
Q ss_pred HH
Q 024618 250 IS 251 (265)
Q Consensus 250 ~~ 251 (265)
.+
T Consensus 280 ~~ 281 (331)
T 3dss_A 280 LL 281 (331)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.87 E-value=2.1e-21 Score=145.25 Aligned_cols=194 Identities=15% Similarity=0.121 Sum_probs=163.8
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
.|++++|+..++++++.+|++...+...........++...........|.+..+...++.+. .|++++|++.+++++
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al 162 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNH 162 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGG
T ss_pred cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhh
Confidence 999999999999999999988766543333333444445555555566777777777777664 688999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhh-cCcHHHHHHHHHHHhc
Q 024618 168 KLKPQDYSLWNKLGATQANS-VQSADAILAYQRALDL 203 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~ 203 (265)
+.+|++......++.++... +.+++|.+.|.++.+.
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 163 EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99998887777777777666 6788888888887764
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.87 E-value=4.4e-20 Score=132.42 Aligned_cols=186 Identities=13% Similarity=0.024 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh----hHHHHHHHHH
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL----EQAAALKYLY 99 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~ 99 (265)
.+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578889998875 68999999999999999999999999999875 578999999999987 6 6766666665
Q ss_pred HHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCC--CC
Q 024618 100 GWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKP--QD 173 (265)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~ 173 (265)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .+
T Consensus 78 ~A~~---------------------------------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 78 KAVE---------------------------------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp HHHH---------------------------------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred HHHH---------------------------------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 5432 4678999999999988 8999999999999999877 34
Q ss_pred HHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc-C-----CcHHHHHHHHHHHhcCCCCch
Q 024618 174 YSLWNKLGATQAN----SVQSADAILAYQRALDLKPNYVRAWANMGISYANQ-G-----MYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 174 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~a~~~~~~~~~ 243 (265)
+.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|... | ++++|+.+|+++.+.. ++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~ 201 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDT 201 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHH
Confidence 8999999999999 88999999999999988 66788999999999864 3 8999999999999874 455
Q ss_pred hHHHHHH
Q 024618 244 AWQYLRI 250 (265)
Q Consensus 244 ~~~~l~~ 250 (265)
+...++.
T Consensus 202 A~~~l~~ 208 (212)
T 3rjv_A 202 GCEEFDR 208 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.87 E-value=7.3e-21 Score=142.84 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=135.4
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++.++
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 33344444555555666777777888899999999999999999999999999999999777777778888999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhCCccccccc
Q 024618 193 AILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA--DNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++..+|+.++|...
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999998 88999999999999999988754
No 107
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.86 E-value=4.8e-21 Score=144.75 Aligned_cols=222 Identities=12% Similarity=0.072 Sum_probs=187.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhh-hHHHHHHHHHHHHhcCCCCCCCc---hhhhhh
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNEL-EQAAALKYLYGWLRHHPKYGTIA---PPELSD 118 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ 118 (265)
++..+..+....+..++|+..+.+++.++|++..+|...+.++...| .+++++..++.++..+|++..++ +.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44444445555666789999999999999999999999999999999 59999999999999999999888 666666
Q ss_pred h-h-chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q 024618 119 S-L-YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD--------KAIESFQTALKLKPQDYSLWNKLGATQANSV 188 (265)
Q Consensus 119 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (265)
. + ++++++.++.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.+..+|..++.++...+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 6 6 8899999999999999999999999999999998888 9999999999999999999999999999988
Q ss_pred C-------cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc--------------------HHHHHHHHHHHhcC---
Q 024618 189 Q-------SADAILAYQRALDLKPNYVRAWANMGISYANQGMY--------------------EESVRYYVRALAMN--- 238 (265)
Q Consensus 189 ~-------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~a~~~~--- 238 (265)
. ++++++++++++..+|++..+|..+..++...|+. .+-.+.....+...
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 7 68999999999999999999999999999888765 22222222222222
Q ss_pred ---CCCchhHHHHHHHHHHhCCccccccc
Q 024618 239 ---PKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 239 ---~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+..+.++..++.+|...|+.++|.++
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~ 324 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKV 324 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35567888999999999998888764
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.86 E-value=4.4e-21 Score=140.51 Aligned_cols=223 Identities=12% Similarity=0.028 Sum_probs=160.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-------HHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhh-hh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLL-------GIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLS-LG 82 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-la 82 (265)
|..|.-+ ..+++..|...|.+++..+|+..++|..+ +.++...++..+++..+++.+.+.|....+++. .|
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 4445444 46667777777777777777777777666 566666666666666666666666666555555 22
Q ss_pred hh---hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 83 VS---HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 83 ~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
.. -+.....++..-. ++..+...|++++|.+.|.......|.+. ..+.+|.++...++|++|
T Consensus 90 ~y~~~~~~v~~r~dl~La--------------yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMG--------------FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp TTCCCEEECSSHHHHHHH--------------HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHH
T ss_pred cccccccccCCHhHHHHH--------------HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHH
Confidence 10 0000000000000 13456667777777777877777788878 999999999999999999
Q ss_pred HHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--Cc-chhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 160 IESFQTALKLKPQD--YSLWNKLGATQANSVQSADAILAYQRALDLK--PN-YVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 160 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+..|+++....+.. ..+++.+|.++..+|++++|+..|++++... |. .+.+++.+|.++.++|+.++|...|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876653221 3589999999999999999999999998644 55 5679999999999999999999999999
Q ss_pred HhcCCCCchhHHHHHH
Q 024618 235 LAMNPKADNAWQYLRI 250 (265)
Q Consensus 235 ~~~~~~~~~~~~~l~~ 250 (265)
+..+|+ ..++..|..
T Consensus 235 ~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 235 QTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHSCC-HHHHHHHHC
T ss_pred HhcCCc-HHHHHHHhC
Confidence 999999 777666543
No 109
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=4.8e-20 Score=143.59 Aligned_cols=230 Identities=10% Similarity=-0.017 Sum_probs=188.7
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--------CChH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENS------EGWRLLGIAHAENDDDQQAIAAMMRAHEAE--------PTNL 75 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~ 75 (265)
+..+|..+...|++++|+..+++++...|... .++..+|.++...|++++|+..++++++.. |...
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 35678899999999999999999998765432 246789999999999999999999999874 3456
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc--------hhhhhhhhchHHHHHHHHHHHhcCC--CC-HHHH-
Q 024618 76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA--------PPELSDSLYYADVARLFVEAARMSP--ED-ADVH- 143 (265)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~--~~-~~~~- 143 (265)
.++..+|.++...|++++|...+++++...+...... +.++...|++++|...+++++...+ .. ....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 6788899999999999999999999999888643211 7788999999999999999987632 22 1111
Q ss_pred ---HHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------chhh
Q 024618 144 ---IVLGVLYNLSRQYDKAIESFQTALKLKPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPN------YVRA 210 (265)
Q Consensus 144 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~ 210 (265)
...+.++...|++++|...+++++...|.. ...+..+|.++...|++++|...+++++...+. ...+
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 134456889999999999999998876653 235678999999999999999999999876443 2347
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
+..+|.++...|++++|...+++++...+
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999998754
No 110
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.86 E-value=4.4e-21 Score=128.86 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc
Q 024618 127 RLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 206 (265)
..+++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45777788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
++.+++.+|.++..+|++++|+..|+++++++|+++........+...++
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877666655554443
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=5.5e-21 Score=128.95 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC
Q 024618 59 QAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE 138 (265)
Q Consensus 59 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 138 (265)
.+...++++++++|+++.+++.+|.++...|++++|+..|++ ++..+|+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~-------------------------------al~~~P~ 68 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF-------------------------------LCIYDFY 68 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------HHHHCTT
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------HHHhCCC
Confidence 344556777888888888999998888888887777655544 4445667
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV 208 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 208 (265)
++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999988764
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.85 E-value=1.3e-22 Score=155.58 Aligned_cols=205 Identities=16% Similarity=0.103 Sum_probs=171.7
Q ss_pred HHHHHcCChHHHHHHHHH----HHHhCCCChHHHHHHHHHHh------------hcCcHHHHHHHHHHHHhcCCChHHHH
Q 024618 15 QELFRKGLLSEAVLALEA----EVLKNPENSEGWRLLGIAHA------------ENDDDQQAIAAMMRAHEAEPTNLEVL 78 (265)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~ 78 (265)
..+...+.+++|+..++. ++...|.. ++...|.... .++++++|+..+++++...|..+.++
T Consensus 73 ~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~ 150 (336)
T 1p5q_A 73 ENLDLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV 150 (336)
T ss_dssp GGGTCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH
T ss_pred CccccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH
Confidence 333345578888888888 77788876 5555565443 56788889999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 024618 79 LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK 158 (265)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (265)
..+|.++...|++++|+..|++++...|.+..... +......|....++..+|.++...|++++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~----------------~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN----------------EEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS----------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCCh----------------HHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999888654210 11122233346889999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHH-HHHHHHHHhc
Q 024618 159 AIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEES-VRYYVRALAM 237 (265)
Q Consensus 159 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~ 237 (265)
|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 215 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 5577777653
No 113
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.2e-21 Score=149.95 Aligned_cols=219 Identities=13% Similarity=0.135 Sum_probs=107.0
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..|..+|..+...|++++|+..|.++ .++..+..++.++...|++++|+.+++.+.+..+ ++.+...++.+|.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHH
Confidence 45777888888888888888888664 3556777788888888888888888888777543 36777778888888
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT 165 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 165 (265)
.|++.++.+.++. |+..... |..+...|.+++|..+|.++ ..+..+|.++.++|++++|++.+++
T Consensus 107 lg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 107 TNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp --CHHHHTTTTTC-----C----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888887766642 3322222 88888889999999888876 3588889999999999999999988
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhH
Q 024618 166 ALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAW 245 (265)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 245 (265)
+ +++.+|...+.++...|+++.|..+... +...|++ ...++.+|.+.|++++|+.++++++.+++.+..++
T Consensus 174 A-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 174 A-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp H-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred c-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 8 4788888888999999999999777665 3355544 44588899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 024618 246 QYLRISLRY 254 (265)
Q Consensus 246 ~~l~~~~~~ 254 (265)
..++.+|.+
T Consensus 245 tel~il~~k 253 (449)
T 1b89_A 245 TELAILYSK 253 (449)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.84 E-value=5.8e-21 Score=139.91 Aligned_cols=171 Identities=12% Similarity=0.012 Sum_probs=144.4
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHH---------------------HHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWR---------------------LLGIAHAENDDDQQAIAAMMRAHEAEP 72 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~ 72 (265)
+.++...++..+++..+++.+...|....+++ .++.++...|++++|.+.|..++...|
T Consensus 54 ~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p 133 (282)
T 4f3v_A 54 RVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS 133 (282)
T ss_dssp HHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 78888889999999999999999887654444 377889999999999999999999999
Q ss_pred ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 024618 73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPE-DADVHIVLGVLYN 151 (265)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~ 151 (265)
.+. +.+.+|.++...+++++|+..++.+....+ |. ...+++.+|.++.
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d------------------------------~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD------------------------------KFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC------------------------------HHHHHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC------------------------------cccHHHHHHHHHHHHH
Confidence 888 999999999999999999988865543211 11 1358999999999
Q ss_pred HccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 152 LSRQYDKAIESFQTALKLK--PQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
.+|++++|+..|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|. +.++..|..
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999998643 54 5678999999999999999999999999999999 777666643
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.84 E-value=8.2e-21 Score=144.04 Aligned_cols=192 Identities=10% Similarity=0.064 Sum_probs=159.9
Q ss_pred hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHH
Q 024618 53 ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132 (265)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 132 (265)
..|++++|.++++++.+..+.. .+...+++++|...|.++ +.++...|++++|+..+.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999998876642 111158899999999887 34677889999999999999
Q ss_pred HhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 133 ARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ--D----YSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 133 ~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
+.+.+.. ..++..+|.++...|++++|+.+|++++++.+. + ..++..+|.++.. |++++|+.+|+++
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 8875432 468889999999999999999999999988443 2 4678899999999 9999999999999
Q ss_pred HhcCCcc------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHHhCCcccccccC
Q 024618 201 LDLKPNY------VRAWANMGISYANQGMYEESVRYYVRALAMNPKAD------NAWQYLRISLRYAGRYPNRGDIF 265 (265)
Q Consensus 201 ~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~ 265 (265)
+.+.|.. ..++.++|.++..+|++++|+.+|++++++.|++. .++..++.++..+|++++|+..|
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9987643 56888999999999999999999999999876543 36778899999999999998653
No 116
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.1e-20 Score=120.09 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHH
Q 024618 137 PEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGI 216 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 216 (265)
|.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHhcC------CCCchhHHHHHHHHHHh
Q 024618 217 SYANQGMYEESVRYYVRALAMN------PKADNAWQYLRISLRYA 255 (265)
Q Consensus 217 ~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~ 255 (265)
++..+|++++|+..|+++++++ |++..++..++.+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999888887653
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.84 E-value=8.8e-20 Score=127.19 Aligned_cols=136 Identities=17% Similarity=0.279 Sum_probs=122.7
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHhhcCc-
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT-QANSVQS- 190 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 190 (265)
+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+ +...|++
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 44467788899999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHH
Q 024618 191 -ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYL 248 (265)
Q Consensus 191 -~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 248 (265)
++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999987654433
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.83 E-value=3.2e-19 Score=145.16 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=160.9
Q ss_pred cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc
Q 024618 56 DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM 135 (265)
Q Consensus 56 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 135 (265)
..++|+..+.+++..+|++..+|...+.++...|+..... .....+++++..++++++.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~---------------------~~~~~~~~eL~~~~~~l~~ 102 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE---------------------ESAALVKAELGFLESCLRV 102 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHH---------------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchh---------------------hhhhhHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999888776510000 0011246677778888888
Q ss_pred CCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CcHHHHHHHHHHHhcCCcchhhHH
Q 024618 136 SPEDADVHIVLGVLYNLSR--QYDKAIESFQTALKLKPQDYSLWNKLGATQANSV-QSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
+|++..+|...+.++...| ++++++..++++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 8999999999999999999 7799999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHhc--------------CCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618 213 NMGISYANQ--------------GMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 213 ~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (265)
.++.++... +.++++++++.+++..+|++..+|++++.++...+++++
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999999885 567999999999999999999999999999999998666
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.83 E-value=6.1e-20 Score=123.99 Aligned_cols=121 Identities=17% Similarity=0.092 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCH
Q 024618 61 IAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDA 140 (265)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 140 (265)
...+++++..+|+++.+++.+|.++...|++++|+..|+++ +..+|.++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-------------------------------l~~~p~~~ 55 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQAL-------------------------------CVLDHYDS 55 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------------------HHHCTTCH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHH-------------------------------HHcCcccH
Confidence 34567777888888888888888887777776666554444 44456678
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++..|+++....
T Consensus 56 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 56 RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 888888888888888888888888888888888888888888888888888888888888888887765543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.83 E-value=3.6e-20 Score=150.71 Aligned_cols=196 Identities=10% Similarity=0.040 Sum_probs=170.9
Q ss_pred HHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 17 LFRKGLL-SEAVLALEAEVLKNPENSEGWRLLGIAHAENDD----------DQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 17 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
....|++ ++|+..+++++..+|++..+|...+.++...|+ +++++..++++++.+|.+..+|...+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555 678999999999999999999999999999988 99999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR-QYDKAIESFQ 164 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~ 164 (265)
...+.+ ++++++..+.++++.+|.+..+|...+.+....| .++++++++.
T Consensus 118 ~~l~~~-----------------------------~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 118 SRLPEP-----------------------------NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HTCSSC-----------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHcccc-----------------------------cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 887721 1344555666666778888999999999999999 9999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhh--------------cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHH----
Q 024618 165 TALKLKPQDYSLWNKLGATQANS--------------VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEE---- 226 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---- 226 (265)
++++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~ 248 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCV 248 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEE
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeee
Confidence 99999999999999999998885 667999999999999999999999999999999998776
Q ss_pred --------HHHHHHHHHhcCCCC
Q 024618 227 --------SVRYYVRALAMNPKA 241 (265)
Q Consensus 227 --------A~~~~~~a~~~~~~~ 241 (265)
|+..|.+++.++|..
T Consensus 249 ~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 249 HVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp EEETTTTEEEEEEEEEECTTBTT
T ss_pred eeccCCceEEEEeccceeccccc
Confidence 566677777777653
No 121
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.3e-18 Score=146.90 Aligned_cols=223 Identities=15% Similarity=0.114 Sum_probs=169.1
Q ss_pred hhHHHHHcCChHHHHHHHHHHH--------------------H--hCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 13 EGQELFRKGLLSEAVLALEAEV--------------------L--KNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~--------------------~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.|..+...|.+++|..+|+++- + ...+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 4666666666666666665431 1 11356789999999999999999999999876
Q ss_pred CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCC--CchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024618 71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGT--IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGV 148 (265)
Q Consensus 71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 148 (265)
+++..+..+|.++.+.|++++|++++..+.+..++... ..+..+.+.+++++ ++.| + ..+ +...+..+|.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I-~~~-n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEF---I-NGP-NNAHIQQVGD 1203 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---H-hCC-CHHHHHHHHH
Confidence 78889999999999999999999999999887754321 12677777777764 3333 2 233 3455667888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC-----------------------
Q 024618 149 LYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP----------------------- 205 (265)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------------- 205 (265)
.+...|++++|..+|.++ ..|..+|.++.+.|++++|++.++++....+
T Consensus 1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 888888888888888885 4778888888888888888888887744332
Q ss_pred --cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 206 --NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 206 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
.+++.+..++..|...|.+++|+.++++++.++|.+...+..++.++.+
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 1334455778888999999999999999999999998888888888765
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.82 E-value=4.4e-19 Score=116.96 Aligned_cols=124 Identities=21% Similarity=0.337 Sum_probs=118.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
+|.+...+..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcc
Q 024618 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYP 259 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (265)
.++...|++++|+.+++++++.+|+++.++..++.++..+|+++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999874
No 123
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6.8e-19 Score=151.10 Aligned_cols=238 Identities=13% Similarity=0.113 Sum_probs=185.0
Q ss_pred CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
.+..|+..|..+...|++++|+..|.++ +++..+..+|.++.+.|++++|++++..+.+..++ +.+...+|.+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHH
Confidence 3456889999999999999999999886 78999999999999999999999999999987743 22233477777
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCC--chhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTI--APPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESF 163 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 163 (265)
.+.+++++ ++.|. ..++.... +|..+...|++++|..+|.++ ..|..++.++...|++++|++.+
T Consensus 1178 AKl~rlee-le~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HhhcCHHH-HHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 77777664 33332 12222221 277777777777777777764 35777777777777777777777
Q ss_pred HHHHhhCC-------------------------CCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618 164 QTALKLKP-------------------------QDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218 (265)
Q Consensus 164 ~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (265)
+++....+ .+++.+..++..|...|.+++|+..+++++.++|.+...+..+|.++
T Consensus 1245 rKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1245 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred HHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHH
Confidence 77643322 23455667788899999999999999999999999999998888887
Q ss_pred Hh--cCCcHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHhCCccccc
Q 024618 219 AN--QGMYEESVRYYVRALAMNP-----KADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 219 ~~--~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
.+ -++..++++.|...+.+.| ++...|..+..+|.+-|++++|+
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 75 4577888899988888777 67889999999999999999987
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.82 E-value=2.4e-20 Score=139.54 Aligned_cols=195 Identities=10% Similarity=-0.085 Sum_probs=148.1
Q ss_pred CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hh
Q 024618 38 PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PP 114 (265)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~ 114 (265)
|.+...+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++...+ |.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999998888776555 77
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
++...|++++|+..++++++.+|++...+......... ..++...........|.++.+...++.+. .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 77778888888888888877776543211111111111 11222222233345566677766666654 68888999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHhc-CCcHHHHHHHHHHHhc
Q 024618 195 LAYQRALDLKPNYVRAWANMGISYANQ-GMYEESVRYYVRALAM 237 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 237 (265)
+.++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999988888877777777777766 6788888888887763
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-19 Score=117.09 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=117.3
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
.|.....+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
.++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998875
No 126
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.82 E-value=5.6e-19 Score=121.56 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHH
Q 024618 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMG 215 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 215 (265)
.+.+...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 024618 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRIS 251 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 251 (265)
.++..+|++++|+.+|+++++++|++..++...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999999866655544
No 127
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.82 E-value=2.3e-19 Score=116.84 Aligned_cols=108 Identities=44% Similarity=0.713 Sum_probs=97.4
Q ss_pred CCCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhh
Q 024618 2 NPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSL 81 (265)
Q Consensus 2 np~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 81 (265)
||+...+.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..++++++++|+++.++..+
T Consensus 12 ~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp CGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56555567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYG 109 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 109 (265)
|.++...|++++|+..++++++.+|++.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999988754
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.82 E-value=1.9e-18 Score=114.45 Aligned_cols=121 Identities=35% Similarity=0.641 Sum_probs=107.6
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444445555555566777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 200 ALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
++...|.++.++..+|.++...|++++|+..++++++.+|+
T Consensus 95 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999998886
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.82 E-value=3.5e-19 Score=127.76 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCC
Q 024618 58 QQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSP 137 (265)
Q Consensus 58 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 137 (265)
.+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++.+ +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---------------------------------~ 47 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---------------------------------Q 47 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------------T
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------------c
Confidence 3578888888875 6889999999999998888888877766654 2
Q ss_pred CCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCC--cc
Q 024618 138 EDADVHIVLGVLYNLSR----QYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKP--NY 207 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~--~~ 207 (265)
.++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .+
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 468899999999998 7 99999999999965 5789999999999998 8999999999999999988 45
Q ss_pred hhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-C-----Cccccccc
Q 024618 208 VRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLRISLRYA-G-----RYPNRGDI 264 (265)
Q Consensus 208 ~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~ 264 (265)
+.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.||.+|... | ++++|+..
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~ 190 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHW 190 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 8999999999999 88999999999999998 77788999999999864 3 67777654
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.81 E-value=4.8e-18 Score=127.97 Aligned_cols=173 Identities=8% Similarity=0.048 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP 114 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 114 (265)
...+...+..+...|++++|++.+.++++..|... ..++.+|.++...|++++|+..+++++...+.....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--- 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---
Confidence 33455667777788888888888888887766543 234556666666777777777776666654432110
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHhh
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL---KLKPQDY----SLWNKLGATQANS 187 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~----~~~~~l~~~~~~~ 187 (265)
.....++..+|.+|...|++++|+.++++++ +..|++. .++.++|.++..+
T Consensus 152 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 152 ----------------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp ----------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH
Confidence 0125688999999999999999999999999 4566543 6899999999999
Q ss_pred cCcHHHHHHHHHHHhcCCc------chhhHHHHHHHHHhcCCcHHH-HHHHHHHHhcC
Q 024618 188 VQSADAILAYQRALDLKPN------YVRAWANMGISYANQGMYEES-VRYYVRALAMN 238 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~ 238 (265)
|++++|+.++++++...+. ...+++.+|.++..+|++++| ..++++++.+.
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999987543 267889999999999999999 88899998763
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.81 E-value=5.4e-20 Score=130.67 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=118.6
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY----------------SLWNKLGA 182 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~ 182 (265)
.+.++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++ .++..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333344567788899999999999999999999999988887 88999999
Q ss_pred HHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccc
Q 024618 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 183 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 262 (265)
++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777665
No 132
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.81 E-value=5.5e-18 Score=112.20 Aligned_cols=134 Identities=32% Similarity=0.482 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY 121 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
.+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------ 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------ 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------
Confidence 35667777777777777777777777777777777777777777777776666655544443
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus 64 -------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 64 -------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp -------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3455566777778888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCc
Q 024618 202 DLKPN 206 (265)
Q Consensus 202 ~~~~~ 206 (265)
..+|.
T Consensus 131 ~~~~~ 135 (136)
T 2fo7_A 131 ELDPR 135 (136)
T ss_dssp HHSTT
T ss_pred ccCCC
Confidence 77765
No 133
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.81 E-value=6.1e-21 Score=152.17 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=129.6
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHH
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---------------YSLWNKLG 181 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~ 181 (265)
...+++++|+..++.++...|.....+..+|..+...|++++|+..|+++++++|.+ ..++.++|
T Consensus 245 ~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 355677778888888888888888999999999999999999999999999999988 68999999
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccc
Q 024618 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 261 (265)
.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++++|
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred c
Q 024618 262 G 262 (265)
Q Consensus 262 ~ 262 (265)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 134
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.7e-20 Score=143.12 Aligned_cols=235 Identities=14% Similarity=0.017 Sum_probs=147.1
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTN 87 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 87 (265)
..+...+..+...|++++|+.+++.+.+..+ ++.+...++.+|.+.|++.++..+++ .| +..++..+|..+..
T Consensus 62 ~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~ 134 (449)
T 1b89_A 62 SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYD 134 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTT-----CC---------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHH
Confidence 3566778888899999999999999887544 47778889999999999999988875 24 44699999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024618 88 ELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL 167 (265)
Q Consensus 88 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 167 (265)
.|.+++|..+|.++ ++...++.++...|++++|++.++++ .++.+|...+.++...|+++.|..+... +
T Consensus 135 ~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L 203 (449)
T 1b89_A 135 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-I 203 (449)
T ss_dssp --CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred cCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence 99999999999977 22233399999999999999999999 4689999999999999999999777765 2
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHh--cCCcHHHHHHHHHHHhcCC-----C
Q 024618 168 KLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYAN--QGMYEESVRYYVRALAMNP-----K 240 (265)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~-----~ 240 (265)
.. +|+-...+..+|.+.|++++|+..+++++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| +
T Consensus 204 ~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 204 VV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred Hh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 23 445556788999999999999999999999999999999999998875 4677788888888888877 7
Q ss_pred CchhHHHHHHHHHHhCCcccccc
Q 024618 241 ADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
+...|..+..+|.+-++++.|+.
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHH
Confidence 88999999999999999998864
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.80 E-value=6.5e-18 Score=121.19 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=116.8
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 024618 76 EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQ 155 (265)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (265)
..++.+|.++...|++++|+..+++++ .| ++.++..+|.++...|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---------------------------------~~-~~~~~~~lg~~~~~~g~ 52 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---------------------------------DP-HSRICFNIGCMYTILKN 52 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---------------------------------SC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---------------------------------CC-ChHHHHHHHHHHHHcCC
Confidence 345666777777777766666665442 22 47788999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch----------------hhHHHHHHHHH
Q 024618 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV----------------RAWANMGISYA 219 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~ 219 (265)
+++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|.+. .+++.+|.++.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999777655 88999999999
Q ss_pred hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
..|++++|+..++++++.+|++.......+....
T Consensus 133 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 133 KKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 9999999999999999999987655544444433
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.80 E-value=5e-19 Score=118.78 Aligned_cols=126 Identities=14% Similarity=0.061 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHH
Q 024618 62 AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDAD 141 (265)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 141 (265)
..+++++..+|++...++.+|.++...|++++|+..|++ ++..+|+++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-------------------------------al~~~p~~~~ 53 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQA-------------------------------LCMLDHYDAR 53 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------HHHHCTTCHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-------------------------------HHHhCCccHH
Confidence 456667777777777777777777777776666654444 4444566778
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (265)
++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++........+.
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888887766655444443
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.80 E-value=9.6e-19 Score=114.94 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-------hhHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV-------RAWA 212 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~ 212 (265)
..++..+|..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999988763 4788
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618 213 NMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLR 249 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 249 (265)
.+|.++..+|++++|+++|+++++..|+ ++....+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 8999999999999999999999999886 55554443
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.79 E-value=9.7e-18 Score=109.51 Aligned_cols=121 Identities=37% Similarity=0.633 Sum_probs=113.5
Q ss_pred CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618 136 SPED-ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214 (265)
Q Consensus 136 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 214 (265)
+|.. ...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 215 GISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
|.++...|++++|+..++++++.+|+++.++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988765
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.79 E-value=1.4e-18 Score=119.57 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=72.7
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCcchhhHHHH--HHHHHhcCCcHHHHHHHHHHHh
Q 024618 193 AILAYQRALDLKPNYVRAWANM--GISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
|+..+++++..+|.+..++..+ +..+...|++++|+..+.++..
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666666555555332 3335555666666666555443
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.79 E-value=1.7e-18 Score=115.42 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=113.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHH
Q 024618 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANM 214 (265)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 214 (265)
.+|.++..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHhCC
Q 024618 215 GISYANQGMYEESVRYYVRALAMNPK-----ADNAWQYLRISLRYAGR 257 (265)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~ 257 (265)
|.++...|++++|+..|+++++++|+ +..+...+..+..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 66777777777665543
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.79 E-value=9e-19 Score=122.04 Aligned_cols=137 Identities=19% Similarity=0.222 Sum_probs=107.1
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhh-hhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVS-HTNE 88 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~ 88 (265)
.+..+..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...
T Consensus 13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA 92 (177)
T ss_dssp SSTTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 455566677889999999999999999999999999999999999999999999999999999998888888888 6666
Q ss_pred hhH--HHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 89 LEQ--AAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 89 ~~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
|++ ++|+..+ +++++.+|+++.++..+|.++...|++++|+..++++
T Consensus 93 ~~~~~~~A~~~~-------------------------------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 93 SQHMTAQTRAMI-------------------------------DKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp TTCCCHHHHHHH-------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHH-------------------------------HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 665 5555444 4444456667788888888888888888888888888
Q ss_pred HhhCCCCHHHH
Q 024618 167 LKLKPQDYSLW 177 (265)
Q Consensus 167 ~~~~~~~~~~~ 177 (265)
++.+|+++...
T Consensus 142 l~~~p~~~~~~ 152 (177)
T 2e2e_A 142 MDLNSPRINRT 152 (177)
T ss_dssp HHTCCTTSCHH
T ss_pred HhhCCCCccHH
Confidence 88888776543
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.79 E-value=1.6e-18 Score=115.57 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHhhcCcHHHHHHHHHHHhc----
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ-------DYS-----LWNKLGATQANSVQSADAILAYQRALDL---- 203 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 203 (265)
...+...|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567888999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCcchhhH----HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 204 ---KPNYVRAW----ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 204 ---~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
+|+++.+| +++|.++..+|++++|+..|+++++++|++..+...+..+-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999876665555543
No 143
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.78 E-value=2e-18 Score=118.51 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL------------------KPQDYSLWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
...+...|..++..|++++|+..|.+++.. +|.++.++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999998 66777899999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhCCcccc
Q 024618 202 DLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD-NAWQYLRISLRYAGRYPNR 261 (265)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A 261 (265)
.++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...++.+....++..+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 6777888887776655544
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.78 E-value=2.8e-18 Score=111.64 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
.++.+|..+...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCch
Q 024618 222 GMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 222 g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
|++++|+..++++++.+|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999998653
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.78 E-value=1.7e-17 Score=123.16 Aligned_cols=230 Identities=8% Similarity=-0.060 Sum_probs=166.0
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHhhcCcHH---------H------------HHHHHHH
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENS-EGWRLLGIAHAENDDDQ---------Q------------AIAAMMR 66 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~---------~------------A~~~~~~ 66 (265)
.-+--.+-.+-.|+|..++.... +..|.+. .....+.+++..+|++. . |+..+++
T Consensus 15 ~~lf~ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~ 91 (310)
T 3mv2_B 15 MDYFNIKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELEN 91 (310)
T ss_dssp CCTHHHHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 33445667778899988887443 2333332 23344455555555442 1 3445555
Q ss_pred HHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCC--CCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCC---
Q 024618 67 AHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHP--KYGTIA---PPELSDSLYYADVARLFVEAARMSPE--- 138 (265)
Q Consensus 67 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~--- 138 (265)
.++..+....++..+|.++...|++++|++.+.+++..+| ...... +.++...|+.+.|.+.++++.+.+|+
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~ 171 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS 171 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc
Confidence 5555445566678899999999999999999999988887 333333 88899999999999999999888883
Q ss_pred -CHHHHHHH--HHHHHHcc--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--------
Q 024618 139 -DADVHIVL--GVLYNLSR--QYDKAIESFQTALKLKPQ--DYSLWNKLGATQANSVQSADAILAYQRALDL-------- 203 (265)
Q Consensus 139 -~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 203 (265)
+..+...+ +.+.+..| ++.+|...|+++.+..|+ .+..+.+ ++..+|++++|...++.+++.
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~ 248 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence 23333444 44466556 899999999998888776 2333333 889999999999999987776
Q ss_pred --CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 204 --KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 204 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
+|+++.++.+++.+...+|+ +|.++++++.+..|+++.+..
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 47889999888888888887 889999999999999875543
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.78 E-value=2.1e-17 Score=106.85 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHH
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISY 218 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (265)
.+..+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 219 ANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 219 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
...|++++|+..++++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999998887753
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.78 E-value=4.6e-17 Score=122.62 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=138.4
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChH------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSE------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEV 77 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~ 77 (265)
++..+..+...|++++|+..+.++++..|.... .++.+|.++...|++++|+.+++++++..+.. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 346788899999999999999999998876543 45678899999999999999999999865443 568
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHc
Q 024618 78 LLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPED----ADVHIVLGVLYNLS 153 (265)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 153 (265)
+..+|.+|...|++++|+.+++++++.. +..|++ ..++.++|.++...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~----------------------------~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQL----------------------------EALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhcCccccchHHHHHhHHHHHHHH
Confidence 8999999999999999999998877431 112222 26889999999999
Q ss_pred cCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCcHHH-HHHHHHHHhc
Q 024618 154 RQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSVQSADA-ILAYQRALDL 203 (265)
Q Consensus 154 ~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 203 (265)
|++++|+.++++++++.+. .+.++..+|.++...|++++| ..++++++.+
T Consensus 210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999999987532 267899999999999999999 7889998865
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.78 E-value=4.1e-17 Score=116.95 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhch
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYY 122 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (265)
.++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..+++++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------- 65 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSIN------------------- 65 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 35566677777777777777777664 22 556666777766666666555544444433
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHh
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY----------------SLWNKLGATQAN 186 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~ 186 (265)
.+|.++.++..+|.++...|++++|+..++++++..|.+. .++..+|.++..
T Consensus 66 ------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 66 ------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp ------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred ------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777666655 777777777777
Q ss_pred hcCcHHHHHHHHHHHhcCCcc
Q 024618 187 SVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 187 ~~~~~~A~~~~~~~~~~~~~~ 207 (265)
.|++++|+..|+++++..|++
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSG
T ss_pred ccCHHHHHHHHHHHHHcCccc
Confidence 777777777777777777765
No 149
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.77 E-value=2e-17 Score=124.59 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=132.7
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHH------HHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLE------VLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS 119 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (265)
..+..+...|++++|...++++++..+..+. .+..+|.++...+++++|+.++++++...+.....
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-------- 151 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-------- 151 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--------
Confidence 3467788889999999999999887766544 33357777777788888888888877755442211
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHhhcCcHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL---K----PQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
.....++..+|.+|...|++++|+.+|+++++. . +....++.++|.++..+|++++
T Consensus 152 -----------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 3u3w_A 152 -----------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp -----------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 011457899999999999999999999999953 1 2224688999999999999999
Q ss_pred HHHHHHHHHhcCCcc------hhhHHHHHHHHHhcCC-cHHHHHHHHHHHhc
Q 024618 193 AILAYQRALDLKPNY------VRAWANMGISYANQGM-YEESVRYYVRALAM 237 (265)
Q Consensus 193 A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~ 237 (265)
|+.++++++++.+.. +.++..+|.++..+|+ +++|++++++++.+
T Consensus 215 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999876443 6789999999999995 59999999999976
No 150
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.77 E-value=1.2e-17 Score=125.90 Aligned_cols=168 Identities=13% Similarity=0.047 Sum_probs=137.6
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHHhCCCChH------HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh------HHHHh
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVLKNPENSE------GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN------LEVLL 79 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 79 (265)
..+..++..|++++|+..+++++...+..+. .+..+|.++...+++++|+.+++++++..+.. ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4577889999999999999999998777655 23358999999999999999999999965432 34789
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 024618 80 SLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKA 159 (265)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 159 (265)
.+|.+|...|++++|+.+++++++... ......+....++.++|.++...|++++|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~------------------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLE------------------------ALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------HSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH------------------------hcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999988775311 11011123356889999999999999999
Q ss_pred HHHHHHHHhhCCCC------HHHHHHHHHHHHhhcC-cHHHHHHHHHHHhc
Q 024618 160 IESFQTALKLKPQD------YSLWNKLGATQANSVQ-SADAILAYQRALDL 203 (265)
Q Consensus 160 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~ 203 (265)
+.++++++++.+.. +.++..+|.++..+|+ +++|+.+|++++.+
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999875433 7899999999999995 59999999999876
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.77 E-value=7.5e-19 Score=124.73 Aligned_cols=173 Identities=13% Similarity=0.029 Sum_probs=114.2
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHH
Q 024618 48 GIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVAR 127 (265)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 127 (265)
+......|+++++.+.+.......+.....+..+|..+...|++++|+..|++++...|.++...... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~----------~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI----------LL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH----------HH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh----------HH
Confidence 33444455555555555444444444555566666666666666666666666666555543322100 00
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 128 LFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
.....+ ...++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..|++++..+|++
T Consensus 81 ~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 81 DKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 000111 157889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCcHHHH-HHHHHHH
Q 024618 208 VRAWANMGISYANQGMYEESV-RYYVRAL 235 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~-~~~~~a~ 235 (265)
+.++..++.++...++..++. ..+.+.+
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888776 4444443
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.77 E-value=3.2e-17 Score=112.67 Aligned_cols=125 Identities=15% Similarity=0.219 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCcHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHhCCccccccc
Q 024618 220 NQGMYEESVRYYVRALAMNPKADNAWQYLRIS--LRYAGRYPNRGDI 264 (265)
Q Consensus 220 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~ 264 (265)
..|++++|+.+++++++.+|++..++..++.+ +...|++++|++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888888888777554444 7777888877654
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3e-17 Score=107.69 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=99.2
Q ss_pred ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024618 73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNL 152 (265)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (265)
..+..+..+|..+...|++++|+ ..|+++++.+|+++.++..+|.++..
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~-------------------------------~~~~~al~~~p~~~~~~~~~a~~~~~ 50 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAV-------------------------------KAYTEMIKRAPEDARGYSNRAAALAK 50 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH-------------------------------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHH-------------------------------HHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34556666676666666665555 45555555677789999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC------CcchhhHHHHHHHHHh
Q 024618 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK------PNYVRAWANMGISYAN 220 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 220 (265)
.|++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++.+ |.+..++..++.+...
T Consensus 51 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 8888888888877654
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-17 Score=110.13 Aligned_cols=120 Identities=16% Similarity=0.106 Sum_probs=113.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211 (265)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 211 (265)
..|.+...+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 357788999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 024618 212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY 254 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 254 (265)
+.+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877543
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.75 E-value=2.4e-17 Score=109.97 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=98.1
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHhhcCcHHHHHHHHHHHHhc------
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPE-------NSE-----GWRLLGIAHAENDDDQQAIAAMMRAHEA------ 70 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 70 (265)
.++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3578899999999999999999999999999 444 9999999999999999999999999999
Q ss_pred -CCChHHHH----hhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618 71 -EPTNLEVL----LSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 71 -~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
+|+++.+| +++|.++..+|++++|+..|++++++.|++....
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999 9999999999999999999999999999987766
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-17 Score=106.50 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=106.0
Q ss_pred CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
.|.++..+..+|.++...|++++|+..++ +++..+|.+..++..+|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------------------------------~al~~~~~~~~~~~~la~~~ 60 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYT-------------------------------EAIKRNPKDAKLYSNRAACY 60 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHH-------------------------------HHHTTCTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------HHHHcCCCcHHHHHHHHHHH
Confidence 35566777778877777777666665554 55555677789999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCC
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGM 223 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (265)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|.+..++..++.++..+|+
T Consensus 61 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988774
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.74 E-value=7.9e-17 Score=106.04 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---hhhHHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY---SLWNKLGATQANSVQSADAILAYQRALDLKPNY---VRAWANMG 215 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~ 215 (265)
.++.+|..+...|++++|+..++++++.+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467889999999999999999999999999988 799999999999999999999999999999998 78899999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 216 ISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
.++..+|++++|+..|+++++..|+++.+......+-...++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988777666655544443
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.74 E-value=3.1e-17 Score=105.01 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc--chhhHHH
Q 024618 136 SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPN--YVRAWAN 213 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 213 (265)
+|++..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CCcHHHHHHHHHHHhcCCCCc
Q 024618 214 MGISYANQ-GMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 214 l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~ 242 (265)
+|.++... |++++|++++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999998764
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.74 E-value=4.6e-17 Score=107.21 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhhH
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRAW 211 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~ 211 (265)
.+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+ +.++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999998877 8899
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCc
Q 024618 212 ANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRY 258 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 258 (265)
..+|.++...|++++|+.+|+++++..| ++..+..++.+...+++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998 588888898888776554
No 160
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.74 E-value=5e-17 Score=120.64 Aligned_cols=181 Identities=11% Similarity=-0.050 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC--ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 26 AVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP--TNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 26 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
|+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67778887776666677788999999999999999999999999987 8899999999999999999999999999999
Q ss_pred cCCC-----CCCCc----hhhhhhhh--chHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 024618 104 HHPK-----YGTIA----PPELSDSL--YYADVARLFVEAARMSPE--DADVHIVLGVLYNLSRQYDKAIESFQTALKL- 169 (265)
Q Consensus 104 ~~~~-----~~~~~----~~~~~~~~--~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 169 (265)
.+|+ +.... +++....| ++.+|...|+++....|+ .+..++. ++..+|++++|...++.+++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 9883 33322 54455555 899999999999988887 2333333 899999999999999988776
Q ss_pred ---------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618 170 ---------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211 (265)
Q Consensus 170 ---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 211 (265)
+|+++.++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 48899999999999999998 89999999999999997654
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.74 E-value=1e-16 Score=110.16 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=100.5
Q ss_pred CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
.+.++..+..+|.++...|++++|+..|+ ++++.+|+++.++..+|.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~-------------------------------~al~~~p~~~~~~~~l~~~~ 55 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYT-------------------------------QALSIAPANPIYLSNRAAAY 55 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHH-------------------------------HHHHHSTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------HHHHhCCcCHHHHHHHHHHH
Confidence 34456777778888777777766665554 55555677899999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
...|++++|+..++++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++...+....
T Consensus 56 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 56 SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987777665543
No 162
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=7.5e-16 Score=127.23 Aligned_cols=221 Identities=10% Similarity=0.051 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHH-HHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAI-AAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWL 102 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 102 (265)
+.....|++++...|..+..|+..+......|+.++|. ..|++++...|.+...+..++......|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44668899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hcC-----------CCC-----------CCCc---hhhhhhhhchHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcc-C
Q 024618 103 RHH-----------PKY-----------GTIA---PPELSDSLYYADVARLFVEAARM-SPEDADVHIVLGVLYNLSR-Q 155 (265)
Q Consensus 103 ~~~-----------~~~-----------~~~~---~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~ 155 (265)
... |.. ...+ +......|..+.|..+|.++++. .+....++...+.+....+ +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 421 1122 55666778899999999999987 4445677777777777765 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC---cchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP---NYVRAWANMGISYANQGMYEESVRYYV 232 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (265)
.+.|..+|+++++..|+++..|...+......|+.+.|...|++++...| ....+|..........|+.+.+....+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887 356788888888899999999999999
Q ss_pred HHHhcCCCCchh
Q 024618 233 RALAMNPKADNA 244 (265)
Q Consensus 233 ~a~~~~~~~~~~ 244 (265)
++.+..|+++..
T Consensus 566 R~~~~~P~~~~~ 577 (679)
T 4e6h_A 566 RFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHSTTCCHH
T ss_pred HHHHhCCCCcHH
Confidence 999999987543
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.73 E-value=3.5e-18 Score=136.28 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=137.3
Q ss_pred hcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHH
Q 024618 53 ENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEA 132 (265)
Q Consensus 53 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 132 (265)
..+++++|+..++.+++..|.....+..+|.++...|++++|+..|+++++..|.+..... +. .
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---------~~-------~ 309 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE---------KE-------S 309 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---------HH-------H
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh---------HH-------H
Confidence 4556778888888888888888899999999999999999999999999998887654220 00 0
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618 133 ARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
.+..+....++.++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++.
T Consensus 310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 389 (457)
T 1kt0_A 310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 11223346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHH-HHHHHH
Q 024618 213 NMGISYANQGMYEESVR-YYVRAL 235 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~-~~~~a~ 235 (265)
.++.++...|++++|.. .+++++
T Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 390 QISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988875 344433
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-16 Score=126.21 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=164.4
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSE-----------------GWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
+...+..|..+...|+|++|+..|.++++..|.... ++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455688999999999999999999999998876432 578899999999999999999999988
Q ss_pred cCCCh------HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHH
Q 024618 70 AEPTN------LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVH 143 (265)
Q Consensus 70 ~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 143 (265)
..+.. ..+...++.++...|++++|+..+++++...+.. ...+....++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~ 138 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE-------------------------KRVFLKHSLS 138 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS-------------------------SCCSSHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-------------------------CccHHHHHHH
Confidence 65442 2355667778888888888888887766542211 1123346788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhh
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRA 210 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~ 210 (265)
..+|.++...|++++|...+++++.. .+....++..+|.++...|++++|...+++++...+.. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 89999999999999999999998875 22336789999999999999999999999998764321 345
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
+..+|.++...|++++|..+|.++++.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 677889999999999999999999864
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.73 E-value=2.8e-18 Score=137.38 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=79.6
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD 192 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (265)
|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55666666777777777777777776666677777777777777777777777777666666666677777777777777
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHH--HHhcCCcHHHHHHHHHH
Q 024618 193 AILAYQRALDLKPNYVRAWANMGIS--YANQGMYEESVRYYVRA 234 (265)
Q Consensus 193 A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~a 234 (265)
|+..|+++++.+|++..++..++.+ +...|++++|++.+++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7777777766666666666666666 66666666666666553
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.73 E-value=1.9e-16 Score=104.16 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=107.2
Q ss_pred CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
+|.++..+..+|.++...|++++|+..+++ ++...|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGK-------------------------------AIELNPANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------------HHHHCTTCHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHH-------------------------------HHHcCCCCHHHHHHHHHHH
Confidence 445667777788877777777666655554 4455667788999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCc
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMY 224 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (265)
...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++
T Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.72 E-value=1.7e-17 Score=132.86 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=101.0
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024618 74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLY 150 (265)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (265)
.+..+..+|.++...|++++|+..++++++.+|++...+ +.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667778888888888888888888888888776655 77778888888888888888888888888888888888
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHhhcCcHHHHHHHH-----------HHHhcCCcch
Q 024618 151 NLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT--QANSVQSADAILAYQ-----------RALDLKPNYV 208 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~~~~~~~~~~ 208 (265)
...|++++|+..++++++.+|+++.++..++.+ +...|++++|++.++ +++...|+..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 888888888888888888888887777777777 777788888888887 5555555543
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=6.1e-17 Score=106.26 Aligned_cols=98 Identities=10% Similarity=0.109 Sum_probs=83.5
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH-------HHHhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL-------EVLLSLG 82 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~la 82 (265)
+..+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|++. .++..+|
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999887653 4677777
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPK 107 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~ 107 (265)
.++...|++++|+..|++++...|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777788888887777777776654
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.72 E-value=2.1e-17 Score=126.80 Aligned_cols=156 Identities=11% Similarity=0.087 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS 119 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (265)
....+..+|..++..|++++|+..|++++...|++.. +...+++.++..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~----------------------- 226 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMAL----------------------- 226 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHH-----------------------
Confidence 4556777888888888888888888888887776541 122333333321
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQR 199 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 199 (265)
.+. ..++.++|.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++
T Consensus 227 --------~l~---------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 227 --------AVK---------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp --------HHH---------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --------HHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111 247899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcchhhHHHHHHH-HHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 200 ALDLKPNYVRAWANMGIS-YANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
+++++|+++.++..++.+ ....+..+++...|.+++...|+++.
T Consensus 290 al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 290 AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp TTC------------------------------------------
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999999999988 44567788899999999999988653
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.71 E-value=2e-17 Score=107.13 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=76.6
Q ss_pred ccCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618 153 SRQYDKAIESFQTALKL---KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
.|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 466677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618 230 YYVRALAMNPKADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (265)
.++++++..|+++........+....+..++
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666655555555555544
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.71 E-value=1.3e-16 Score=113.39 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-----
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL---KPQD----YSLWNKLGATQANSVQSADAILAYQRALDLKPNY----- 207 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 207 (265)
..++..+|.++...|++++|+..+++++.. .+++ ..++..+|.++...|++++|+..+++++...+..
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 455666677777777777777777777665 3322 3456777777777777777777777777543211
Q ss_pred -hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 208 -VRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 208 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
..++..+|.++...|++++|+.++++++++...
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 234567788888888888888888887776443
No 172
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.71 E-value=6.3e-17 Score=107.67 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=62.6
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYD----------KAIESFQTALKLKPQDYSLWNKLGATQA 185 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (265)
..+.+.+++|+..++++++++|+++.++..+|.++...++++ +|+..|+++++++|+++.+|+++|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345667777888888888888888888887887777776653 6666677777666766666666776666
Q ss_pred hhc-----------CcHHHHHHHHHHHhcCCcc
Q 024618 186 NSV-----------QSADAILAYQRALDLKPNY 207 (265)
Q Consensus 186 ~~~-----------~~~~A~~~~~~~~~~~~~~ 207 (265)
.+| ++++|+.+|+++++++|++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 654 4555555555555555554
No 173
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.70 E-value=1.8e-15 Score=98.58 Aligned_cols=114 Identities=31% Similarity=0.456 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (265)
..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------- 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----------------- 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------
Confidence 345555555555555555555555555555555555555555544444444444433332222
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA 185 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (265)
..|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 72 --------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 72 --------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 223334444445555555555555555555555555555544444444443
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.70 E-value=9.9e-17 Score=106.74 Aligned_cols=93 Identities=19% Similarity=0.158 Sum_probs=80.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcH----------HHHHHHHHHHHhcCCChHHHHhhhhhhh
Q 024618 16 ELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDD----------QQAIAAMMRAHEAEPTNLEVLLSLGVSH 85 (265)
Q Consensus 16 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~ 85 (265)
..-+.+.|++|+..++++++.+|+++++|..+|.++...+++ ++|+..|+++++++|++..+++.+|.+|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 445678899999999999999999999999999999998875 5999999999999999999999999999
Q ss_pred hhhh-----------hHHHHHHHHHHHHhcCCCC
Q 024618 86 TNEL-----------EQAAALKYLYGWLRHHPKY 108 (265)
Q Consensus 86 ~~~~-----------~~~~A~~~~~~~~~~~~~~ 108 (265)
...| ++++|+.+|+++++++|++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 9886 5666666666666666554
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.70 E-value=5.1e-16 Score=103.24 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPEL 116 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (265)
+|.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------- 71 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE------------- 71 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------
Confidence 3445555666666666666666666666666665555555555555555555554444433333222
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ 172 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 172 (265)
.+|+++.++..+|.++...|++++|+..+++++...|+
T Consensus 72 ------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 72 ------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 23334455555555555555555555555555555444
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.70 E-value=1e-16 Score=124.27 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALK----------------LKPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
...+..+|..+...|++++|+..|+++++ ..|.++.++.++|.++..+|++++|+..++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 67778899999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCcccccc
Q 024618 204 KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877653
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=2.5e-16 Score=108.02 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=108.7
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhc--------CCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q 024618 74 NLEVLLSLGVSHTNELEQAAALKYLYGWLRH--------HPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIV 145 (265)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (265)
.+..+...|..++..|++++|+..|.+++.. .|.++ .....+|....++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~n 68 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP---------------------EWVELDRKNIPLYAN 68 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH---------------------HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH---------------------HHHHHHHHHHHHHHH
Confidence 4567888999999999999999999888876 22211 011235677889999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhcCC
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV-RAWANMGISYANQGM 223 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 223 (265)
+|.++...|++++|+..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 69 la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 667777777665543
No 178
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=1.8e-16 Score=112.63 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=118.9
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCc
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL------KPQDYSLWNKLGATQANSVQS 190 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 190 (265)
...|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35677777777554444433366889999999999999999999999999984 344567899999999999999
Q ss_pred HHHHHHHHHHHhc---CC----cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHhCC
Q 024618 191 ADAILAYQRALDL---KP----NYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQYLRISLRYAGR 257 (265)
Q Consensus 191 ~~A~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~ 257 (265)
++|+..+++++.. .+ ....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999987 33 235678899999999999999999999999764322 2346789999999999
Q ss_pred ccccccc
Q 024618 258 YPNRGDI 264 (265)
Q Consensus 258 ~~~A~~~ 264 (265)
+++|.+.
T Consensus 163 ~~~A~~~ 169 (203)
T 3gw4_A 163 LLEAQQH 169 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 179
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=2.3e-15 Score=97.03 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444455555555677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcchhhHHHHHHHH
Q 024618 201 LDLKPNYVRAWANMGISY 218 (265)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~ 218 (265)
++.+|+++.++..++.+.
T Consensus 99 ~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 99 LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHhh
Confidence 999999999998888765
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.68 E-value=1.7e-15 Score=96.82 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=98.7
Q ss_pred CCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--hHHHHhhhhh
Q 024618 6 GHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT--NLEVLLSLGV 83 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~ 83 (265)
....++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|. ++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhh-hhHHHHHHHHHHHHhcCCCCC
Q 024618 84 SHTNE-LEQAAALKYLYGWLRHHPKYG 109 (265)
Q Consensus 84 ~~~~~-~~~~~A~~~~~~~~~~~~~~~ 109 (265)
++... |++++|+.++++++...|..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999988764
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.67 E-value=1.2e-15 Score=100.32 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=93.9
Q ss_pred CcchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhh
Q 024618 8 PNPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSL 81 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 81 (265)
..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3568899999999999999999999999999988 799999999999999999999999999999998 8899999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKY 108 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~ 108 (265)
|.++...|++++|+..++++++..|++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999998888888877764
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.67 E-value=1.1e-16 Score=122.85 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDY-----------------SLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
.....+..+|..+...|++++|+..|++++...|.+. .++.++|.++..+|++++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3466788999999999999999999999999999876 48999999999999999999999999
Q ss_pred HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHH-hCCccccccc
Q 024618 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRY-AGRYPNRGDI 264 (265)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 264 (265)
++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+... .+..+++...
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988544 4445555443
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-15 Score=99.01 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=64.9
Q ss_pred CCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Q 024618 37 NPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN---LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAP 113 (265)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 113 (265)
.|.+...+..+|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------- 93 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE---------- 93 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh----------
Confidence 45566677777777777777777777777777777765 45555555555555544444433333222
Q ss_pred hhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024618 114 PELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGAT 183 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 183 (265)
.+|+++.++..+|.++...|++++|+..+++++..+|+++.++..++.+
T Consensus 94 ---------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 94 ---------------------KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp ---------------------HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ---------------------hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 2333444555555555555555555555555555555555554444443
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.66 E-value=2.3e-16 Score=102.03 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=84.7
Q ss_pred hhhchHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618 118 DSLYYADVARLFVEAARM---SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888889999988 58888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchhhHH
Q 024618 195 LAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (265)
..+++++...|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999877654
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-15 Score=120.54 Aligned_cols=210 Identities=10% Similarity=-0.005 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhh
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSL 120 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (265)
|.+....|..+...|++++|++.|.++++..|.........+......+..++|+..+ +.++...|
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l--------------~~~y~~~~ 69 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILEL--------------GQLYVTMG 69 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHH--------------HHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHH--------------HHHHHHCC
Confidence 4566777888999999999999999999998876544333333333333333332211 23334444
Q ss_pred chHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhc
Q 024618 121 YYADVARLFVEAARMSPED------ADVHIVLGVLYNLSRQYDKAIESFQTALKLKP------QDYSLWNKLGATQANSV 188 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~ 188 (265)
++++|.+.+.+++...+.. ..+...++.++...|++++|+..+++++...+ ....++..+|.++...|
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 4444444444444332221 23556678888889999999999999987532 23678899999999999
Q ss_pred CcHHHHHHHHHHHhc------CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHHh
Q 024618 189 QSADAILAYQRALDL------KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA-------DNAWQYLRISLRYA 255 (265)
Q Consensus 189 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~ 255 (265)
++++|+..+++++.. .+....++..+|.+|...|++++|...+++++...+.. ...+..+|..+...
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCED 229 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSS
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999998865 33446789999999999999999999999998864332 24556677888888
Q ss_pred CCccccccc
Q 024618 256 GRYPNRGDI 264 (265)
Q Consensus 256 ~~~~~A~~~ 264 (265)
|++++|...
T Consensus 230 ~~y~~A~~~ 238 (434)
T 4b4t_Q 230 KDYKTAFSY 238 (434)
T ss_dssp SCHHHHHHH
T ss_pred HhHHHHHHH
Confidence 888887654
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=5e-15 Score=94.60 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC------chhHHH
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA------DNAWQY 247 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~ 247 (265)
+..+..+|.++...|++++|+..|++++..+|.++.++.++|.++..+|++++|+..++++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777766 666667
Q ss_pred HHHHHHHhCCccccccc
Q 024618 248 LRISLRYAGRYPNRGDI 264 (265)
Q Consensus 248 l~~~~~~~~~~~~A~~~ 264 (265)
+|.++..+|++++|++.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 77777777777666654
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.6e-14 Score=119.35 Aligned_cols=207 Identities=9% Similarity=-0.006 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHH-HHHHHHHhcCCCCCCCc---hhhhhhhhchHHHHHHHHHH
Q 024618 57 DQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAAL-KYLYGWLRHHPKYGTIA---PPELSDSLYYADVARLFVEA 132 (265)
Q Consensus 57 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~ 132 (265)
.+.....|++++...|.++.+|+..+......|+.++|. ..|++++...|.+..++ +......|++++|..+|+++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345678899999999999999999999999999999997 99999999999887655 77778889999999999999
Q ss_pred Hhc-----------CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhhc-
Q 024618 133 ARM-----------SPE-----------DADVHIVLGVLYNLSRQYDKAIESFQTALKL-KPQDYSLWNKLGATQANSV- 188 (265)
Q Consensus 133 ~~~-----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~- 188 (265)
+.. .|. ...+|...+.+..+.|+.+.|...|.++++. .+....+|...+.+....+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 875 253 3457888899999999999999999999987 4555778887787777665
Q ss_pred CcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHhCCcccccc
Q 024618 189 QSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK---ADNAWQYLRISLRYAGRYPNRGD 263 (265)
Q Consensus 189 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 263 (265)
+.+.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ....|......-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4999999999999999999999999999999999999999999999998883 45778888888888888776543
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.62 E-value=9e-15 Score=96.07 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhh
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDS 119 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (265)
.+..+..+|.++...|++++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++...|.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------- 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-------- 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--------
Confidence 456788899999999999999999999999999999999999999999999888888887777664432100
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQ 189 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (265)
.+..+.++..+|.++...|++++|+..++++++..| ++..+..++.+....++
T Consensus 75 ----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 75 ----------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 000166788899999999999999999999999888 57888888877665543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.61 E-value=6.1e-15 Score=114.26 Aligned_cols=141 Identities=14% Similarity=0.107 Sum_probs=118.1
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 024618 75 LEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR 154 (265)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (265)
...+..+|..+...|++++|+..|+++++..+..+ .....+.....+|.+..++..+|.++...|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR---------------AAAEDADGAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc---------------cccChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35577788888888888888888887776433210 111123333467778899999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHH
Q 024618 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRY 230 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (265)
++++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++...
T Consensus 288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887653
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.58 E-value=7.3e-15 Score=100.19 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCc------ch
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD------YSLWNKLGATQANSVQSADAILAYQRALDLKPN------YV 208 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 208 (265)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+..+++++...+. ..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 466777888888888888888888877764432 456778888888888888888888888766322 24
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 209 RAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
.++..+|.++...|++++|+.++++++++...
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999888876543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=98.67 Aligned_cols=140 Identities=18% Similarity=0.118 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH------HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchh
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL------EVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPP 114 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 114 (265)
..++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++...+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 34677889999999999999999999888755432 47888899999999998888888877765332110
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhc
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ------DYSLWNKLGATQANSV 188 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 188 (265)
.+....++..+|.++...|++++|+..+++++...+. .+.++..+|.++...|
T Consensus 85 ---------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 85 ---------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 0112467888999999999999999999999876332 2467889999999999
Q ss_pred CcHHHHHHHHHHHhcCC
Q 024618 189 QSADAILAYQRALDLKP 205 (265)
Q Consensus 189 ~~~~A~~~~~~~~~~~~ 205 (265)
++++|+..++++++...
T Consensus 144 ~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999987644
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.56 E-value=2.6e-14 Score=91.93 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC
Q 024618 125 VARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK 204 (265)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 204 (265)
|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred C
Q 024618 205 P 205 (265)
Q Consensus 205 ~ 205 (265)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 193
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.55 E-value=6.9e-12 Score=100.74 Aligned_cols=251 Identities=7% Similarity=-0.101 Sum_probs=184.6
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc-HHHHHHHHHHHHhc---CCChHHHHhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDD-DQQAIAAMMRAHEA---EPTNLEVLLSLGVSH 85 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~---~~~~~~~~~~la~~~ 85 (265)
.+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. +|.+..+|......+
T Consensus 17 vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~ 95 (493)
T 2uy1_A 17 IMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE 95 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 45666666777999999999999999888 78888877776666553 35566778888764 677778888777665
Q ss_pred h----hhhhHHHHHHHHHHHHhcCCCCC-CCc----h-------------------------------------------
Q 024618 86 T----NELEQAAALKYLYGWLRHHPKYG-TIA----P------------------------------------------- 113 (265)
Q Consensus 86 ~----~~~~~~~A~~~~~~~~~~~~~~~-~~~----~------------------------------------------- 113 (265)
. ..++.+.+...|++++.. |... ..+ .
T Consensus 96 ~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 96 GKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 4 457888888999999884 4321 000 0
Q ss_pred ---hhhhhhhc---------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024618 114 ---PELSDSLY---------YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLG 181 (265)
Q Consensus 114 ---~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 181 (265)
.+-...++ .......|++++...|..+.+|...+..+...|+.++|...|++++.. |.+...|...+
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~ 253 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYG 253 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 00000111 234567899999999999999999999999999999999999999999 98865554433
Q ss_pred HH----------------------------------------HHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc
Q 024618 182 AT----------------------------------------QANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ 221 (265)
Q Consensus 182 ~~----------------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (265)
.. ....++.+.|...|+++ ...+....+|...+.+....
T Consensus 254 ~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 254 LVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp HHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH
Confidence 32 22467788899999999 43333456777777777766
Q ss_pred C-CcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccccccc
Q 024618 222 G-MYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 222 g-~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+ +.+.|...|+.+++..|+.+..+...+......|+.+.|..+
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6 599999999999999999888888888888888888877654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=6e-15 Score=94.21 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc------hhhHH
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY------VRAWA 212 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 212 (265)
+...+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999999999999999998 88899
Q ss_pred HHHHHHHhcCCcHHHHHHHHH
Q 024618 213 NMGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~ 233 (265)
.+|.++...|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988888766654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.53 E-value=8.5e-14 Score=85.40 Aligned_cols=82 Identities=35% Similarity=0.602 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLR 253 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 253 (265)
+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hh
Q 024618 254 YA 255 (265)
Q Consensus 254 ~~ 255 (265)
.+
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.51 E-value=3.2e-13 Score=86.76 Aligned_cols=101 Identities=25% Similarity=0.311 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC--chhHHHHHHHHHHhCC
Q 024618 237 MNPKA--DNAWQYLRISLRYAGR 257 (265)
Q Consensus 237 ~~~~~--~~~~~~l~~~~~~~~~ 257 (265)
+.|.. ......+...+..+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 98853 4555566666665544
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.51 E-value=2.7e-13 Score=83.11 Aligned_cols=85 Identities=36% Similarity=0.550 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 138 EDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 024618 218 YANQG 222 (265)
Q Consensus 218 ~~~~g 222 (265)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88765
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.47 E-value=2.5e-13 Score=84.82 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=84.3
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChH-HHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSE-GWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
.+.+|..++..|++++|+..++++++.+|+++. +++.+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 578899999999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred hhHHHHHHHHHHHHhcCCCCCC
Q 024618 89 LEQAAALKYLYGWLRHHPKYGT 110 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~ 110 (265)
+.+.+++..|+++...+|+++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 7788888888888887776543
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.47 E-value=4.2e-13 Score=83.93 Aligned_cols=70 Identities=14% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3555555555555555555555555555555555555555555555555555555555555555555443
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.44 E-value=2.5e-13 Score=84.79 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=76.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcC
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYS-LWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQG 222 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (265)
+..|..+...|++++|+..++++++.+|+++. ++..+|.++...|++++|+..|+++++.+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 46788888889999999999999999999888 99999999999999999999999999999988877644 5
Q ss_pred CcHHHHHHHHHHHhcCCCCc
Q 024618 223 MYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 223 ~~~~A~~~~~~a~~~~~~~~ 242 (265)
.+.+++..|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67788888888887777654
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=7.1e-12 Score=83.12 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=100.3
Q ss_pred hhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHH
Q 024618 119 SLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAI 194 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 194 (265)
.+++++|+.+|+++.+..+... . +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3567778888888887764433 3 899999889999999999999886 788999999999998 89999999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHHHHh----cCCcHHHHHHHHHHHhcCCCCchhHHHHH
Q 024618 195 LAYQRALDLKPNYVRAWANMGISYAN----QGMYEESVRYYVRALAMNPKADNAWQYLR 249 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 249 (265)
.+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+.. ++.+...|+
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999999876 568899999999999 899999999999999873 455555444
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.42 E-value=2.3e-12 Score=80.51 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=73.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch--hhHH
Q 024618 135 MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV--RAWA 212 (265)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ 212 (265)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|... ....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999876543 3333
Q ss_pred HHHHHHHhc
Q 024618 213 NMGISYANQ 221 (265)
Q Consensus 213 ~l~~~~~~~ 221 (265)
.+..++...
T Consensus 82 ~l~~~l~~~ 90 (100)
T 3ma5_A 82 ELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 444444333
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.35 E-value=2.3e-10 Score=86.66 Aligned_cols=156 Identities=12% Similarity=0.012 Sum_probs=105.9
Q ss_pred HHHHHhCCCChHHHH--HHHHHHhhcC---cHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 024618 31 EAEVLKNPENSEGWR--LLGIAHAEND---DDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH 105 (265)
Q Consensus 31 ~~~~~~~~~~~~~~~--~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 105 (265)
+++....|.++.+|- ..|..++..+ +..+|+.+|+++++++|+++.++..++.++.......
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~------------- 250 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH------------- 250 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-------------
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-------------
Confidence 345556777777653 4566666544 4589999999999999999999998888886221110
Q ss_pred CCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024618 106 PKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQA 185 (265)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (265)
|... ........+... ...+..+|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++.
T Consensus 251 ~~~~-------~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 251 PLDE-------KQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp CCCH-------HHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred CCch-------hhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 0000 000001122221 1233456777888888888777778888888888888888764 667778888888
Q ss_pred hhcCcHHHHHHHHHHHhcCCcch
Q 024618 186 NSVQSADAILAYQRALDLKPNYV 208 (265)
Q Consensus 186 ~~~~~~~A~~~~~~~~~~~~~~~ 208 (265)
..|++++|++.|++++.++|..+
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcC
Confidence 88888888888888888888764
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.34 E-value=8e-11 Score=85.62 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=88.3
Q ss_pred hcCCCCHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhh-----cCcHHHHH
Q 024618 134 RMSPEDADVHIVLGVLYNL-----SR------QYDKAIESFQTALKLKPQ--DYSLWNKLGATQANS-----VQSADAIL 195 (265)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~-----~~------~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~ 195 (265)
+.+|++++.++..|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4567788877777765532 12 356888899999999998 567999999999884 89999999
Q ss_pred HHHHHHhcCCcc-hhhHHHHHHHHHh-cCCcHHHHHHHHHHHhcCCCC
Q 024618 196 AYQRALDLKPNY-VRAWANMGISYAN-QGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 196 ~~~~~~~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~ 241 (265)
+|+++++++|+. ..+++.+|..+.. .|++++|..++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 8999999998887 489999999999999987763
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=1e-10 Score=77.45 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=92.8
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHh
Q 024618 55 DDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAAR 134 (265)
Q Consensus 55 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 134 (265)
+++++|+.+|+++.+..+.... +|.+|...+..++|+.+|+++ .+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~A-------------------------------a~ 53 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKA-------------------------------CE 53 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHH-------------------------------HH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHH-------------------------------Hc
Confidence 4677788888888776543333 777777666666565555544 44
Q ss_pred cCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCcHHHHHHHHHHHhcCCc
Q 024618 135 MSPEDADVHIVLGVLYNL----SRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN----SVQSADAILAYQRALDLKPN 206 (265)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~ 206 (265)
. .++.+.+.+|.+|.. .+++++|+.+|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+...
T Consensus 54 ~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~- 128 (138)
T 1klx_A 54 L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS- 128 (138)
T ss_dssp T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-
T ss_pred C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC-
Confidence 3 568999999999998 89999999999999986 789999999999999 8999999999999998743
Q ss_pred chhhHHHHH
Q 024618 207 YVRAWANMG 215 (265)
Q Consensus 207 ~~~~~~~l~ 215 (265)
+.+...++
T Consensus 129 -~~A~~~l~ 136 (138)
T 1klx_A 129 -EDACGILN 136 (138)
T ss_dssp -HHHHHHC-
T ss_pred -HHHHHHHh
Confidence 44554444
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.30 E-value=1.3e-11 Score=98.45 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=100.1
Q ss_pred hhhhhchHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCC---HHHHHH
Q 024618 116 LSDSLYYADVARLFVEAARM-----SPED---ADVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQD---YSLWNK 179 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~ 179 (265)
+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++ ...+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55778899999999988875 3444 467888999999999999999999999875 4455 456889
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHhc-----CCcch---hhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 180 LGATQANSVQSADAILAYQRALDL-----KPNYV---RAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 180 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
+|.+|..+|++++|+..+++++.+ .|+++ .....++.++..++.+++|...|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 45544 55678999999999999999999888664
No 207
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.30 E-value=1.8e-09 Score=86.77 Aligned_cols=203 Identities=13% Similarity=0.010 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 24 SEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
+.....|++++...|..+..|...+..+...|+.++|...+++++.. |.+...+...+.... .++. ...+.....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTHH---HHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhHH---HHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999 998777765554421 1111 111111110
Q ss_pred cCC---------C-CCCCc---hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhh
Q 024618 104 HHP---------K-YGTIA---PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR-QYDKAIESFQTALKL 169 (265)
Q Consensus 104 ~~~---------~-~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 169 (265)
... . ....+ +......+..+.|...|+++ ...+....++...|.+....+ +.+.|...|+.+++.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 010 0 00111 44445577789999999999 433345667777777666666 699999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 170 KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|+++..|...+......|+.+.|...|+++ +.....|......-...|+.+.+...+++++.
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999888888888888899999999999987 34567777777777888999888888888875
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.30 E-value=1e-10 Score=88.55 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----HHHHH----HHHH--HHhhCCCCHHHHHHHHHHHHhhcCc
Q 024618 121 YYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY----DKAIE----SFQT--ALKLKPQDYSLWNKLGATQANSVQS 190 (265)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~----~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~ 190 (265)
...+|+.+|+++++++|+...++..++.++.....+ ..... .+.. ++..+|.++.++..++..+...|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 356788888888888888888888777776522111 11111 1221 2245789999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 191 ADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
++|+..+++++.++|+ ..++..+|.++...|++++|++.|.+|+.++|..+
T Consensus 294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999975 67788999999999999999999999999999864
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.25 E-value=1.1e-11 Score=99.06 Aligned_cols=118 Identities=12% Similarity=0.005 Sum_probs=98.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCc---chhh
Q 024618 147 GVLYNLSRQYDKAIESFQTALKL-----KPQD---YSLWNKLGATQANSVQSADAILAYQRALDL-----KPN---YVRA 210 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~ 210 (265)
+..+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|++++|+.++++++.. .|+ ....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 44567899999999999999976 3444 467889999999999999999999999976 344 4567
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhc-----CCCCch---hHHHHHHHHHHhCCccccccc
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAM-----NPKADN---AWQYLRISLRYAGRYPNRGDI 264 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~---~~~~l~~~~~~~~~~~~A~~~ 264 (265)
+.++|.+|..+|++++|+.++++++++ .|+++. ....++.++..++.+++|...
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999974 677764 456788888888888877653
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.24 E-value=2.1e-10 Score=70.06 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhcC---cHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 170 KPQDYSLWNKLGATQANSVQ---SADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
+|+++.++..+|.++...++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35556666666666554443 466666666666666666666666666666666666666666666666655
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.20 E-value=3.8e-10 Score=74.32 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc---CcHHHHHHHHHHHhcC-C-cchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618 157 DKAIESFQTALKLKPQDYSLWNKLGATQANSV---QSADAILAYQRALDLK-P-NYVRAWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
..+.+.|.+.+..+|.+.++.+.+|.++.+.+ +.++++..++.+++.+ | ...+.++++|..+.++|+|++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44555566666666666677777777776665 4556777777777666 5 44666777777777777777777777
Q ss_pred HHHHhcCCCCchhHHHH
Q 024618 232 VRALAMNPKADNAWQYL 248 (265)
Q Consensus 232 ~~a~~~~~~~~~~~~~l 248 (265)
+++++++|++..+....
T Consensus 95 ~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 77777777766655443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.19 E-value=4.4e-10 Score=68.62 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcch
Q 024618 136 SPEDADVHIVLGVLYNLSRQ---YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYV 208 (265)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 208 (265)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68899999999999986666 79999999999999999999999999999999999999999999999999843
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=1.3e-09 Score=71.80 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=85.1
Q ss_pred hchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhhcCcHHHH
Q 024618 120 LYYADVARLFVEAARMSPEDADVHIVLGVLYNLSR---QYDKAIESFQTALKLK-P-QDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 120 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
.....+.+.|.+.+..+|.+..+.+.+|.++.+.+ +.++++..++.+++.+ | ...++++.+|..+.+.|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44566777888888888889999999999999988 6779999999999998 6 56899999999999999999999
Q ss_pred HHHHHHHhcCCcchhhHHHHHHH
Q 024618 195 LAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
++++++++.+|++..+....-.+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999997776554433
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.07 E-value=1.6e-09 Score=67.90 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-------CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDLK-------PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
+.-.+.+|..++..|+|..|+..|+++++.. +..+.++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3444555555555555555555555555431 223455566666666666666666666666666666665555
Q ss_pred HHH
Q 024618 247 YLR 249 (265)
Q Consensus 247 ~l~ 249 (265)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.05 E-value=1.4e-08 Score=74.09 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=80.3
Q ss_pred hhchHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-hcC
Q 024618 119 SLYYADVARLFVEAARMSPE--DADVHIVLGVLYNLS-----RQYDKAIESFQTALKLKPQD-YSLWNKLGATQAN-SVQ 189 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~ 189 (265)
.+....|...++++++++|+ +..++..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|+
T Consensus 176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34457888899999999999 677999999999995 99999999999999999975 9999999999988 599
Q ss_pred cHHHHHHHHHHHhcCCcc
Q 024618 190 SADAILAYQRALDLKPNY 207 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~~~~ 207 (265)
+++|.+.+++++..+|..
T Consensus 256 ~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 RAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999999998874
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.01 E-value=1.8e-09 Score=84.87 Aligned_cols=94 Identities=9% Similarity=0.031 Sum_probs=79.6
Q ss_pred HccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCc---chhhHHHHH
Q 024618 152 LSRQYDKAIESFQTALKL-----KPQDY---SLWNKLGATQANSVQSADAILAYQRALDL-----KPN---YVRAWANMG 215 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~ 215 (265)
..|++++|+..+++++++ .|+++ .++.++|.+|..+|++++|+.++++++.. .|+ -...+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999999985 45554 56889999999999999999999999976 344 456789999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhc-----CCCCchhH
Q 024618 216 ISYANQGMYEESVRYYVRALAM-----NPKADNAW 245 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~ 245 (265)
.+|..+|++++|+.++++++++ .|+++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999875 67776543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.98 E-value=6.5e-09 Score=81.90 Aligned_cols=109 Identities=9% Similarity=0.023 Sum_probs=87.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-----CCcc---hhh
Q 024618 147 GVLYNLSRQYDKAIESFQTALKL-----KPQD---YSLWNKLGATQANSVQSADAILAYQRALDL-----KPNY---VRA 210 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~ 210 (265)
..-+...|++++|+..+++++++ .|++ ..++.++|.+|..+|++++|+.++++++.. .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999975 3444 467889999999999999999999999975 3444 467
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhc-----CCCCchh---HHHHHHHHHHh
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAM-----NPKADNA---WQYLRISLRYA 255 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~---~~~l~~~~~~~ 255 (265)
+.++|.+|..+|++++|+.++++++++ .|+++.+ ..+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999875 6777644 45566666544
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.95 E-value=1.5e-08 Score=63.35 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhH
Q 024618 139 DADVHIVLGVLYNLSRQYDKAIESFQTALKLK-------PQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAW 211 (265)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 211 (265)
++.-.+.+|..++..|+|..|+..|+++++.. +..+.++..+|.++.++|++++|+..+++++...|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567899999999999999999999999863 34578899999999999999999999999999999998888
Q ss_pred HHHH
Q 024618 212 ANMG 215 (265)
Q Consensus 212 ~~l~ 215 (265)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.89 E-value=1.5e-06 Score=69.96 Aligned_cols=186 Identities=7% Similarity=-0.086 Sum_probs=127.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcC-CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAE-PTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY 121 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
.+..+-..+.+.|+.++|+++|+++.+.. +.+..++..+-.++...+... .....+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~----------------------~~~~~~~ 85 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT----------------------ESSPNPG 85 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS----------------------SSSCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh----------------------hhhhcch
Confidence 34555677889999999999999988753 124444544444433222100 0112334
Q ss_pred hHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHH
Q 024618 122 YADVARLFVEAARM--SPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQ 198 (265)
Q Consensus 122 ~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 198 (265)
.++|.++|+++... .| +..++..+...+.+.|++++|...++++.+.. +.+..+|..+...+.+.|+.++|.+.|+
T Consensus 86 l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 45566666665543 24 47788888899999999999999999887752 2357788888889999999999999999
Q ss_pred HHHhcCC-cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc--CCCCchhHHHHHHHH
Q 024618 199 RALDLKP-NYVRAWANMGISYANQGMYEESVRYYVRALAM--NPKADNAWQYLRISL 252 (265)
Q Consensus 199 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~ 252 (265)
+..+..- .+...|..+...+.+.|+.++|.+.+++..+. .|+ ..++..+...+
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 8876532 23577888889999999999999999988764 444 33444444333
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.87 E-value=1.2e-08 Score=80.37 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=77.8
Q ss_pred hhhchHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHH
Q 024618 118 DSLYYADVARLFVEAARM-----SPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQDY---SLWNKLG 181 (265)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~ 181 (265)
..|++++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|++| ..+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356789999999999875 45554 56889999999999999999999999975 44554 5689999
Q ss_pred HHHHhhcCcHHHHHHHHHHHhc-----CCcchhh
Q 024618 182 ATQANSVQSADAILAYQRALDL-----KPNYVRA 210 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~ 210 (265)
.+|..+|++++|+..+++++++ .|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999976 5666544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.84 E-value=1.1e-08 Score=80.49 Aligned_cols=106 Identities=12% Similarity=-0.051 Sum_probs=84.7
Q ss_pred hhhhhhchHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHH
Q 024618 115 ELSDSLYYADVARLFVEAARM-----SPEDA---DVHIVLGVLYNLSRQYDKAIESFQTALKL-----KPQDY---SLWN 178 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~ 178 (265)
.+...|++++|+..+++++.. .|+++ .++.++|.+|..+|+|++|+.++++++.+ .|++| ..++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 345678899999999999975 34554 67889999999999999999999999975 34554 5688
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHhc-----CCcchh---hHHHHHHHHHh
Q 024618 179 KLGATQANSVQSADAILAYQRALDL-----KPNYVR---AWANMGISYAN 220 (265)
Q Consensus 179 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~ 220 (265)
++|.+|..+|++++|+..+++++++ .|+++. +..+++.+...
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975 555553 44556665543
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.84 E-value=3.4e-06 Score=67.98 Aligned_cols=160 Identities=11% Similarity=-0.025 Sum_probs=120.0
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHhhc---------CcHHHHHHHHHHHHhcC-CChHHHHhhhh
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKN-PENSEGWRLLGIAHAEN---------DDDQQAIAAMMRAHEAE-PTNLEVLLSLG 82 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~-~~~~~~~~~la 82 (265)
-..+.+.|+.++|+.+|+++.+.. +.+...+..+-.++... +..++|.++|++..... +.+..++..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455668999999999999998765 23566666666666543 34788999999887753 23667788888
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIES 162 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 162 (265)
..+.+.|+.++|...+++..+.. ..| +...+..+...+.+.|+.++|.+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g-----------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFG-----------------------------IQP-RLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTT-----------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC-----------------------------CCC-ccceehHHHHHHHHCCCHHHHHHH
Confidence 88888888888887777665432 123 367788888888888999999999
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 163 FQTALKLK-PQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
++++.+.. ..+...+..+...+.+.|+.++|.+.+++..+.
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 98887652 224667888888888999999999888887654
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.77 E-value=2.4e-07 Score=58.80 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHH---HHHHHHHHHhcC-C-cchhhHHHHHHHHHhcCCcHHHHH
Q 024618 155 QYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSAD---AILAYQRALDLK-P-NYVRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
....+...|.+.+..++.+..+.+.+|.++.+..+... ++..++..+..+ | ...+.++.+|..+++.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455566666666667777778888887777666555 777777777765 4 345677788888888888888888
Q ss_pred HHHHHHhcCCCCchhHHHHHH
Q 024618 230 YYVRALAMNPKADNAWQYLRI 250 (265)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~l~~ 250 (265)
+++.+++..|++..+......
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 888888888887766554433
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.72 E-value=1.4e-06 Score=56.58 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=97.9
Q ss_pred cCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 024618 135 MSPEDADVHIVLGVLYNLSRQY------DKAIESFQTALKLKPQD--------YSLWNKLGATQANSVQSADAILAYQRA 200 (265)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 200 (265)
..|++++.|..........|+. ++-++.|++++..-|.. ...|...+.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5799999999999999999999 89999999999876653 3456666655 5669999999999999
Q ss_pred HhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCC
Q 024618 201 LDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGR 257 (265)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 257 (265)
+......+.+|...|....++|+...|.+.+.+++.+.|...+.+ ..+..-.+.|.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~ 142 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQK 142 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCC
Confidence 988777889999999999999999999999999999998854443 34444444443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.62 E-value=8e-07 Score=56.40 Aligned_cols=96 Identities=10% Similarity=0.013 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhhcCcHHHHHH
Q 024618 122 YADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDK---AIESFQTALKLK-P-QDYSLWNKLGATQANSVQSADAILA 196 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~ 196 (265)
...+...|.+....++....+.+.+|.++....+... ++..++..+... | ..-+.++.+|..+++.|+|++|.++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455666777777777789999999999999887776 999999988876 4 4568899999999999999999999
Q ss_pred HHHHHhcCCcchhhHHHHHHH
Q 024618 197 YQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~~ 217 (265)
++.+++..|++..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998776554433
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.59 E-value=5e-07 Score=59.93 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCCCCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--
Q 024618 3 PYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENS---------EGWRLLGIAHAENDDDQQAIAAMMRAHEAE-- 71 (265)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 71 (265)
|..+...++.....++..|.|+.|+.....++....+++ .++..+|.+++..++|.+|...|+++++..
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 445556678899999999999999999998776543333 378889999999999999999999987641
Q ss_pred -CC----------------------hHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 024618 72 -PT----------------------NLEVLLSLGVSHTNELEQAAALKYLYGW 101 (265)
Q Consensus 72 -~~----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (265)
+. +.++.+.++.|+...+++++|+..++.+
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11 1257777888888888888888776553
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.37 E-value=2.4e-05 Score=50.91 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR 209 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 209 (265)
.+|...|.. ...++.++|.+.|+.++......+.+|...|..-..+|+...|.+.+.+++.+.|....
T Consensus 62 ~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 62 RIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 445555544 45588888888888888777777788888888888888888888888888888877543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.37 E-value=4.5e-06 Score=55.41 Aligned_cols=45 Identities=4% Similarity=-0.057 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 024618 207 YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISL 252 (265)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 252 (265)
+.++.+.++.|+...|++++|+..++..-.. ...+.+...||.+|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 3478888999999999999999988764222 23466666677665
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.20 E-value=0.00013 Score=47.09 Aligned_cols=74 Identities=8% Similarity=-0.027 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhhcCc---HHHHHHHHHHHhcCCc-chhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHH
Q 024618 173 DYSLWNKLGATQANSVQS---ADAILAYQRALDLKPN-YVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQ 246 (265)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 246 (265)
++.+.++++.++.+..+. .+++..++..+...|. ..+.++.+|..++++|+|++|..+.+..++..|++..+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 455555555555554332 3455555555555552 3455556666666666666666666666666666654443
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.14 E-value=6.1e-05 Score=47.96 Aligned_cols=71 Identities=7% Similarity=-0.128 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhh
Q 024618 140 ADVHIVLGVLYNLSRQY---DKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRA 210 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 210 (265)
+.+.+.+|.++.+..+. .+++..++..++..|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++..+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 34455555555444332 2344455554444442 23444455555555555555555555555555554443
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.14 E-value=8.1e-06 Score=51.96 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHhhcCc---HHHHHHHHHHHHhcCCC-hHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc
Q 024618 40 NSEGWRLLGIAHAENDD---DQQAIAAMMRAHEAEPT-NLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA 112 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 112 (265)
.+.+.+.+|.++.+..+ ..+++..++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 45666666666665553 34566677776666663 356677777777777777777777777777777665443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.05 E-value=0.00032 Score=45.30 Aligned_cols=80 Identities=8% Similarity=-0.125 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHH
Q 024618 137 PEDADVHIVLGVLYNLSRQY---DKAIESFQTALKLKPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWA 212 (265)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 212 (265)
+-.+.+.+.+|.++....+. .+++..++..+...|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44588999999999887754 5799999999998884 4688999999999999999999999999999999977655
Q ss_pred HHHH
Q 024618 213 NMGI 216 (265)
Q Consensus 213 ~l~~ 216 (265)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00044 Score=57.98 Aligned_cols=115 Identities=12% Similarity=0.051 Sum_probs=81.1
Q ss_pred hhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--H-ccCHHHHHHHHHHHHhh--------CCCC----------HHH
Q 024618 119 SLY-YADVARLFVEAARMSPEDADVHIVLGVLYN--L-SRQYDKAIESFQTALKL--------KPQD----------YSL 176 (265)
Q Consensus 119 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~~A~~~~~~~~~~--------~~~~----------~~~ 176 (265)
.++ ++.|+..+++....+|..... +..+.+.. . ..+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 577888888888888865432 22222221 1 22344677777776642 2222 234
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 024618 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
+..-+..+...|+++-|+..-++++...|.....|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5555677778899999999999999999999999999999999999999999887765
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.005 Score=51.79 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=80.6
Q ss_pred hcCc-HHHHHHHHHHHHhcCCChHHHHhhhhhh---hhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHH
Q 024618 53 ENDD-DQQAIAAMMRAHEAEPTNLEVLLSLGVS---HTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARL 128 (265)
Q Consensus 53 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 128 (265)
..++ ++.|+..+++..+.+|.....+ ..+.+ .....+--+|+..+.+.++.
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~------------------------ 314 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDP------------------------ 314 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHH------------------------
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHH------------------------
Confidence 3444 6889999999999888654322 22221 11223344555555444421
Q ss_pred HHHHH-hcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHH
Q 024618 129 FVEAA-RMSPE----------DADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAY 197 (265)
Q Consensus 129 ~~~~~-~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 197 (265)
+...+ ...+. ....+...+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.+
T Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 315 LLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 11111 11111 12355566777888899999999999999999999999999999999999999998877
Q ss_pred HHH
Q 024618 198 QRA 200 (265)
Q Consensus 198 ~~~ 200 (265)
+.+
T Consensus 395 NSc 397 (754)
T 4gns_B 395 NSM 397 (754)
T ss_dssp HHS
T ss_pred hcC
Confidence 765
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.63 E-value=0.0031 Score=53.90 Aligned_cols=128 Identities=13% Similarity=-0.021 Sum_probs=77.4
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHhh
Q 024618 116 LSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK--------LKPQDYSLWNKLGATQANS 187 (265)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~ 187 (265)
....|++++|.+..+ ..++...|..+|..+...++++.|+.+|.++-. ....+...+..++......
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344555555555532 335678899999999999999999999988622 1234445555666666666
Q ss_pred cCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhCCcc
Q 024618 188 VQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKA---DNAWQYLRISLRYAGRYP 259 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~ 259 (265)
|++..|...|.+. .-......+|.+.+++++|+...++ ..|.. +......+.-+...|+.+
T Consensus 737 ~~~~~A~~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 737 GKFNLAFNAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp TCHHHHHHHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred CchHHHHHHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence 6666666555432 0111234456666677776665554 34443 244555666666777643
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.56 E-value=0.0059 Score=50.37 Aligned_cols=80 Identities=9% Similarity=-0.128 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 156 YDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
..++...+.+.....+ +......++......|+++.|...|...-......+...+.+|.++...|+.++|...|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3445555555443322 222222333334455777777777765443323345556667777777777777777777766
Q ss_pred h
Q 024618 236 A 236 (265)
Q Consensus 236 ~ 236 (265)
.
T Consensus 347 ~ 347 (618)
T 1qsa_A 347 Q 347 (618)
T ss_dssp T
T ss_pred c
Confidence 4
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.52 E-value=0.0043 Score=48.03 Aligned_cols=171 Identities=12% Similarity=0.019 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhc
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLY 121 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (265)
.+.+.+|..|...|+.++-.+++......-+.-+.+ ++.+..+..+...+..+..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~~~~~---------- 74 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLDMDAG---------- 74 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTTSCCC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhcCCCc----------
Confidence 577888999999999888888777654332221111 1222222333222221111
Q ss_pred hHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHhhcC
Q 024618 122 YADVARLFVEAARMSPED--A----DVHIVLGVLYNLSRQYDKAIESFQTALKLKP--QD----YSLWNKLGATQANSVQ 189 (265)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~ 189 (265)
.+.-++.+..+++...+. . .+-..+|.+|+..|+|.+|...+.+..+.-. ++ .+++.....+|...++
T Consensus 75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n 154 (394)
T 3txn_A 75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSN 154 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Confidence 122223333333221111 1 1234678888888999998888888776321 11 3556666777888888
Q ss_pred cHHHHHHHHHHHhcC---Ccc----hhhHHHHHHHHH-hcCCcHHHHHHHHHHHhc
Q 024618 190 SADAILAYQRALDLK---PNY----VRAWANMGISYA-NQGMYEESVRYYVRALAM 237 (265)
Q Consensus 190 ~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 237 (265)
+.++...+.++.... +.+ +.....-|..+. ..++|.+|...|-.+++.
T Consensus 155 ~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 155 LPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 888888888876542 111 234455677788 788888888888887754
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.45 E-value=0.0057 Score=44.25 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=48.4
Q ss_pred hHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHH
Q 024618 14 GQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76 (265)
Q Consensus 14 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 76 (265)
...+++.|++++|+......++.+|.+......+...+.-.|++++|..-++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 345667788888888888888888888888777888888888888888888888888776543
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.32 E-value=0.015 Score=38.80 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=63.8
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh--c--C-------------CC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE--A--E-------------PT 73 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~--~-------------~~ 73 (265)
+-.+..++-.|.|..++-.+.+. +...+.+..+.||...+++.+|+.+++..+. . + |.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 44577777788888777665433 4456677778888888888888888888873 2 2 22
Q ss_pred hH-HHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618 74 NL-EVLLSLGVSHTNELEQAAALKYLYGWLRHHPK 107 (265)
Q Consensus 74 ~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 107 (265)
+. -.+..+|.+....|+.++|+.++.......|-
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 22 24556777778888888888888777766553
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.29 E-value=0.017 Score=41.80 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=85.4
Q ss_pred hhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHH
Q 024618 115 ELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
.+...|..++++......++.+|.+......+..+++-.|+|+.|..-++.+.+++|.....-..+..+ -.|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHH
Confidence 356678889999999999999999999999999999999999999999999999999865432221111 1111
Q ss_pred HHHHHHHhc--CC---cchhhH---HHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc
Q 024618 195 LAYQRALDL--KP---NYVRAW---ANMGISYANQGMYEESVRYYVRALAMNPKAD 242 (265)
Q Consensus 195 ~~~~~~~~~--~~---~~~~~~---~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 242 (265)
..=.+++.- .| ..+..| ..-+......|+.++|...-.++++..|..+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111222211 11 122223 3345566678999999999999999877543
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.25 E-value=0.038 Score=47.27 Aligned_cols=134 Identities=9% Similarity=-0.019 Sum_probs=68.9
Q ss_pred hhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHH
Q 024618 52 AENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVE 131 (265)
Q Consensus 52 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 131 (265)
...|++++|.+..+ ..+++..|..+|..+...++++.|+.+|.++ ++++.+..++..
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~------------------~d~~~l~~l~~~ 719 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA------------------HDLESLFLLHSS 719 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------TCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc------------------cChhhhHHHHHH
Confidence 34555555554432 2245566666777777777777776666433 233333333322
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc---h
Q 024618 132 AARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNY---V 208 (265)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 208 (265)
..+...+..++......|++..|...+.+. .++ .....++...+++++|+..-++ ..|.. +
T Consensus 720 -----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~---~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~ 783 (814)
T 3mkq_A 720 -----FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI---QGAKDLLIKSQRFSEAAFLGST---YGLGDNEVN 783 (814)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH---HHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH---HHHHHHHHHcCChHHHHHHHHH---hCCChHHHH
Confidence 334555556666666677776666555442 111 1223445566666666665443 33333 2
Q ss_pred hhHHHHHHHHHhcCCc
Q 024618 209 RAWANMGISYANQGMY 224 (265)
Q Consensus 209 ~~~~~l~~~~~~~g~~ 224 (265)
.+....+.-+...|+.
T Consensus 784 ~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 784 DIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHhccch
Confidence 3444455555555654
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.12 E-value=0.0047 Score=49.46 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=43.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 143 HIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 143 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666555555555665555555554444555555554443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.02 E-value=0.023 Score=44.19 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 177 WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 177 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556667778888888888888888888777888888888888888888887776543
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0087 Score=40.51 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=44.2
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAH 68 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 68 (265)
+-...+..|+++.|..+.+++ ++...|..+|......|+++-|..+|.++-
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344567889999999998876 678899999999999999999999999873
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.014 Score=46.08 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC--Ccch----hh
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQ---DYSLWNKLGATQANSVQSADAILAYQRALDLK--PNYV----RA 210 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~ 210 (265)
..++..+|..+...|++++|.+.|.++...... ..+.+..+..++...+++..+...+.++.... ..++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 457788999999999999999999998775332 25777888888889999999999999886542 1222 23
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
....|.++...++|.+|...|-.++....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 44567777888999999999888776543
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.99 E-value=0.02 Score=49.71 Aligned_cols=96 Identities=10% Similarity=-0.072 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC-CcchhhHHHHHH
Q 024618 142 VHIVLGVLYNLSRQYDKAIESFQTALKL----KPQDYSLWNKLGATQANSVQSADAILAYQRALDLK-PNYVRAWANMGI 216 (265)
Q Consensus 142 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 216 (265)
.+..+...+++.|+.++|...|.+..+. ..-+..+|..+...+.+.|+.++|.+.|++..+.. ..+..+|..+-.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4555666666666666666666554321 12345566666666666666666666666665432 122455555555
Q ss_pred HHHhcCCc-HHHHHHHHHHHhc
Q 024618 217 SYANQGMY-EESVRYYVRALAM 237 (265)
Q Consensus 217 ~~~~~g~~-~~A~~~~~~a~~~ 237 (265)
++.+.|+. ++|.+.++++.+.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 66666654 4566666666553
No 247
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.86 E-value=0.013 Score=47.05 Aligned_cols=74 Identities=11% Similarity=0.013 Sum_probs=47.3
Q ss_pred hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618 113 PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (265)
|.+......+..|..+|.++..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 33333344456677777777777777777777777777777777777777777766655566666666655543
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.83 E-value=0.018 Score=44.78 Aligned_cols=91 Identities=14% Similarity=-0.022 Sum_probs=73.2
Q ss_pred hhHHHHHcCChHHHHHHHHHHHHhCCCC--------h--------------HHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 13 EGQELFRKGLLSEAVLALEAEVLKNPEN--------S--------------EGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 13 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.|......|+.+.|...+.+++...... . .+...++..+...|++.+++..+.+++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444556789999999999998865211 1 02334567788899999999999999999
Q ss_pred CCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 71 EPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 71 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
+|-+..++..+..++...|+..+|+..|+++..
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999876643
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.056 Score=36.58 Aligned_cols=45 Identities=11% Similarity=-0.201 Sum_probs=32.8
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024618 117 SDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTA 166 (265)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 166 (265)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455666666665543 45778888888888888888888888775
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.79 E-value=0.12 Score=40.06 Aligned_cols=180 Identities=13% Similarity=-0.004 Sum_probs=111.9
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHH-----HHHHHHHhh-cCcHHHHHHHHHHHHhcCCCh----HH--H
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGW-----RLLGIAHAE-NDDDQQAIAAMMRAHEAEPTN----LE--V 77 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~----~~--~ 77 (265)
.+.+|..+...|+.++-..++......-+.-+.+. ..+-..+.. .+..+.-++....+++...+. .. .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998888877654433333322 222222222 344555566666666532222 11 3
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhcCCC--CCCCc-------hhhhhhhhchHHHHHHHHHHHhcC---CCCH----H
Q 024618 78 LLSLGVSHTNELEQAAALKYLYGWLRHHPK--YGTIA-------PPELSDSLYYADVARLFVEAARMS---PEDA----D 141 (265)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~ 141 (265)
-..+|..|+..|++.+|+..+.+..+.... +.... ..++...+++.++...+.++.... +.++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 447899999999999999988888774333 22111 667778888888888887775432 1223 3
Q ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHhhCCCC--H---HHHHHHHHHHHhhcC
Q 024618 142 VHIVLGVLYN-LSRQYDKAIESFQTALKLKPQD--Y---SLWNKLGATQANSVQ 189 (265)
Q Consensus 142 ~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~~~ 189 (265)
+...-|.++. ..++|.+|...|-+++...... + .+...++.+-...++
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 4455577788 7899999999988887543322 1 233444555555554
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.15 Score=40.51 Aligned_cols=60 Identities=10% Similarity=-0.069 Sum_probs=36.4
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKN------PENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAE 71 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 71 (265)
+..+..+ ..|+++.|+..+..+.+.. +....+...+..++...|+++...+.+....+..
T Consensus 21 ~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr 86 (445)
T 4b4t_P 21 FPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH 86 (445)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 3445444 3478888988775554321 3345677778888999999988877776554443
No 252
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.75 E-value=0.06 Score=36.00 Aligned_cols=204 Identities=16% Similarity=0.123 Sum_probs=126.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHH
Q 024618 15 QELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAA 94 (265)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 94 (265)
...++-.+|+.++-+-.-+ .|..++....++.+++-.|.+..++-.+.. -+...+.+.-+.||....++..|
T Consensus 10 ~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 10 CKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888776543322 345557777889999999999999877653 35567777788999999999999
Q ss_pred HHHHHHHHhcCCC-CCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024618 95 LKYLYGWLRHHPK-YGTIAPPELSDSLYYADVARLFVEAARMSPEDADV-HIVLGVLYNLSRQYDKAIESFQTALKLKPQ 172 (265)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 172 (265)
+..+++.+.-.-+ ++..-+. -+.+-.+|.+.+. +..+|.++...|+.++|+.++.......|-
T Consensus 82 ~~~le~il~~kvd~d~~~d~~---------------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 82 IKSLESILEGKVERDPDVDAR---------------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHTTCSBCCCCCCHH---------------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcccccCcccccc---------------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 9999999953222 1111100 0111235666654 556788999999999999999998887765
Q ss_pred CHHHHHHHHHH--H--------HhhcC-------cHHHH--------HHHHHHHhcCCcchh-hHHHHHHHHHhcCCcHH
Q 024618 173 DYSLWNKLGAT--Q--------ANSVQ-------SADAI--------LAYQRALDLKPNYVR-AWANMGISYANQGMYEE 226 (265)
Q Consensus 173 ~~~~~~~l~~~--~--------~~~~~-------~~~A~--------~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 226 (265)
.+.+-..+-.- . ...|+ +.... ...++-.+.-|.-.. .....+..++.+|-.++
T Consensus 147 f~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~ 226 (242)
T 3kae_A 147 FSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDK 226 (242)
T ss_dssp HHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchh
Confidence 44332111000 0 00000 00011 112222223344322 23456778899999999
Q ss_pred HHHHHHHHHhcCCCC
Q 024618 227 SVRYYVRALAMNPKA 241 (265)
Q Consensus 227 A~~~~~~a~~~~~~~ 241 (265)
+..+|...-+.+|..
T Consensus 227 s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 227 SKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHhcCCCc
Confidence 999999998888863
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.028 Score=44.96 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=67.1
Q ss_pred hhhhhhhchHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHccCHHHH----------HHHHHHHHhh---
Q 024618 114 PELSDSLYYADVARLFVEAAR-----------MSPEDADVHIVLGVLYNLSRQYDKA----------IESFQTALKL--- 169 (265)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A----------~~~~~~~~~~--- 169 (265)
..+...+++++|..+....+. +++-...+|+..+.++...|+.... ...+-.+++.
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 345566777777766654441 1333456777777777777766543 2233333322
Q ss_pred --CCC-CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 170 --KPQ-DYSLWNKLGATQANSVQSADAILAYQRALDLKPNY-------VRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 170 --~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
++. ....+..+-..|...+.++.|.....++. .|.. ...++.+|.++..+++|.+|.+++..|+...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 221 24667788889999999999999999884 3321 34567799999999999999999999999888
Q ss_pred CCch-------hHHHHHHHHHHhCCccc
Q 024618 240 KADN-------AWQYLRISLRYAGRYPN 260 (265)
Q Consensus 240 ~~~~-------~~~~l~~~~~~~~~~~~ 260 (265)
.+.. ++..+..+-.-+|+..+
T Consensus 302 ~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 302 HNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp CSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 6532 22233333344676553
No 254
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.36 E-value=0.35 Score=40.09 Aligned_cols=53 Identities=4% Similarity=-0.204 Sum_probs=27.9
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 150 YNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
.++.|+++.|...+..+-...+..+...+.+|.++...|+.++|...|+++..
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34445666665555544332223344555555555555666666665555543
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.19 E-value=0.17 Score=44.24 Aligned_cols=91 Identities=5% Similarity=-0.132 Sum_probs=65.4
Q ss_pred hhhhhhhhchHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHh
Q 024618 113 PPELSDSLYYADVARLFVEAAR-----MSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKLK-PQDYSLWNKLGATQAN 186 (265)
Q Consensus 113 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 186 (265)
...+.+.|+.++|..+|.+..+ ..| +...|..+...+.+.|+.++|.+.|+++.+.. .-+..+|..+..++.+
T Consensus 134 IdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK 212 (1134)
T 3spa_A 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 3455666667777777655432 234 47788888888999999999999998887642 2356677777788888
Q ss_pred hcCc-HHHHHHHHHHHhcC
Q 024618 187 SVQS-ADAILAYQRALDLK 204 (265)
Q Consensus 187 ~~~~-~~A~~~~~~~~~~~ 204 (265)
.|+. ++|.+.+++.....
T Consensus 213 ~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 213 QDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HTCCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcC
Confidence 8875 67888888877653
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.15 E-value=0.087 Score=47.15 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=58.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcC---------------------
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLK--------------------- 204 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------- 204 (265)
+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344445555544433 223445555555666666666666666666665542110
Q ss_pred --CcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhCCccccc
Q 024618 205 --PNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKAD-----NAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 205 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~ 262 (265)
...+..|..+..++.+.|.++.+++..+.|++..+.+. ..|..+-..+..+|+|++|.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00123445555566666666666666666665443222 13445555566666666664
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.08 E-value=0.76 Score=41.28 Aligned_cols=54 Identities=6% Similarity=-0.195 Sum_probs=37.4
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
.+...+...+.++-+.+ .+..-|.++...+.+|.++...|++++|..+|+++..
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34445566666655543 3345566777778888888888999999888887643
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.025 Score=44.68 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcCC---ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCc-------
Q 024618 43 GWRLLGIAHAENDDDQQAIAAMMRAHEAEP---TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIA------- 112 (265)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------- 112 (265)
++..+|..+...|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++...........
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 555666666666666666666666655322 2245555555666666666666666666544322221111
Q ss_pred --hhhhhhhhchHHHHHHHHHHHh
Q 024618 113 --PPELSDSLYYADVARLFVEAAR 134 (265)
Q Consensus 113 --~~~~~~~~~~~~a~~~~~~~~~ 134 (265)
|..+...++|.+|...|-.++.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 4444555555555555555444
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.99 E-value=6.3e-08 Score=75.32 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=98.9
Q ss_pred CCcchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 7 HPNPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
++.|..+|......|+..+||..|-++ +++..+.....+..+.|.+++-+.+++-+-+.- ..+.+-..|..+|.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccHHHHHHHHH
Confidence 445667777777777777777766554 333344444555566777777777766655432 22233333334444
Q ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCc--hhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024618 87 NELEQAAALKYLYGWLRHHPKYGTIA--PPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQ 164 (265)
Q Consensus 87 ~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 164 (265)
+.++..+-.+.+ ..|+..... |.-+...|.|+.|.-+|... .-|..++.++..+|++..|++.-+
T Consensus 128 k~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 128 KTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp TSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred hhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322111000 112221111 44444444444433333211 112334444555555555554443
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchh
Q 024618 165 TALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPKADNA 244 (265)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 244 (265)
++ +++.+|-....++...+++.-|..+--..+- .|+. +-.+...|...|.+++=+..++.++.+..-+...
T Consensus 195 KA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 195 KA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp TC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred hc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 32 3444455555555555554444443333322 1111 1112233444445555555555555444444444
Q ss_pred HHHHHHHHH
Q 024618 245 WQYLRISLR 253 (265)
Q Consensus 245 ~~~l~~~~~ 253 (265)
...||.+|.
T Consensus 266 FTELaILYs 274 (624)
T 3lvg_A 266 FTELAILYS 274 (624)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.035 Score=44.39 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcc
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD-------YSLWNKLGATQANSVQSADAILAYQRALDLKPNY 207 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 207 (265)
..++..+-..|...+.++.|..+..++. .|.+ ...++.+|.++..+++|.+|.+++..|+...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3455666677777777777777777663 3322 3455667777777777777777777777766543
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.78 E-value=0.88 Score=39.57 Aligned_cols=210 Identities=11% Similarity=0.030 Sum_probs=97.0
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------hH----HHHhhh
Q 024618 17 LFRKGLLSEAVLALEAEVLKN-PEN----SEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPT------NL----EVLLSL 81 (265)
Q Consensus 17 ~~~~~~~~~A~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~----~~~~~l 81 (265)
.+..|+.++++..+.+.+... ..+ .-+.+.+|.++...+ +++...+...+..+.. .. .+-..+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345567777777766655422 122 225555666655554 3567777666654320 11 244566
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCC-----CchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 024618 82 GVSHTNELEQAAALKYLYGWLRHHPKYGT-----IAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQY 156 (265)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (265)
|.++...++ +++...+...+..+..... .+|.++...|+-+-...++..+.....+...-...+|..+...|+.
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 666665554 3455555555543221100 0044445555554444445544443322222223334444456666
Q ss_pred HHHHHHHHHHHhhCCCCHHH----HHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618 157 DKAIESFQTALKLKPQDYSL----WNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
+.+-...+..... .++.. -..+|..|...|+...-...+..+.....++..-...+|......|+.+.+...+
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 6555555544432 22222 2344555666676443333555544332222222222333333445544333333
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.46 Score=37.69 Aligned_cols=94 Identities=15% Similarity=-0.047 Sum_probs=72.1
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHhhcCcHHHHHHHHHHHHh---cCCCh----HHH
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNP--EN----SEGWRLLGIAHAENDDDQQAIAAMMRAHE---AEPTN----LEV 77 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~----~~~ 77 (265)
..++..+...|++.+|..++..+....- .+ .+.+......+...+++.+|...+.++.. ..+.. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3568999999999999999998864321 11 34777788899999999999999998742 12222 245
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHhc
Q 024618 78 LLSLGVSHTNELEQAAALKYLYGWLRH 104 (265)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 104 (265)
+...|.++...++|.+|..+|..++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 677788888999999999999888764
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.37 E-value=3.8 Score=35.84 Aligned_cols=212 Identities=9% Similarity=0.016 Sum_probs=116.6
Q ss_pred HHcCChHHHHHHHHHHHHhCC---C---Ch----HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChH--HHHhhhhhhh
Q 024618 18 FRKGLLSEAVLALEAEVLKNP---E---NS----EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNL--EVLLSLGVSH 85 (265)
Q Consensus 18 ~~~~~~~~A~~~~~~~~~~~~---~---~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~ 85 (265)
...|..++++..+...+..+. . +. .+-..+|.++.-.++ +++.+.+...+..+.... .+-..+|.++
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 345555678888888776543 1 11 245577887777765 466777777776443222 3556778888
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCCCc----hhhhhhhhchHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHccCHH
Q 024618 86 TNELEQAAALKYLYGWLRHHPKYGTIA----PPELSDSLYYADVARLFVEAARMSPEDAD----VHIVLGVLYNLSRQYD 157 (265)
Q Consensus 86 ~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~ 157 (265)
...|+.+.....+..+.+...+ .... +..+...|+.+.+..+.+..... .++. +-..+|..|...|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 8888876666666655543221 1111 33344556666555555554442 2333 3345677788899965
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHH----HHHHHHhcCCcHHHHHHHHH
Q 024618 158 KAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWAN----MGISYANQGMYEESVRYYVR 233 (265)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~ 233 (265)
.-...+..+.....++..-...+|......|+.+.+.+.+..... ..++.+.+. +|.+....+ ..++++.+.+
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~-~~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKG-LQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSC-CHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 555566666653222333333344444455666555554443332 223444444 333332233 3678888877
Q ss_pred HHh
Q 024618 234 ALA 236 (265)
Q Consensus 234 a~~ 236 (265)
...
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 754
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.79 E-value=2.3 Score=31.82 Aligned_cols=79 Identities=9% Similarity=-0.072 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------h---hCCCCHHHHHHHHH-
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTAL----------------K---LKPQDYSLWNKLGA- 182 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~---~~~~~~~~~~~l~~- 182 (265)
.+|+.+-.+.-...-.++..+..+|..+...|++.+|..+|-..- + -.|.....+...+.
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL 196 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVF 196 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 334444433322233678999999999999999999998774210 1 12222344444443
Q ss_pred HHHhhcCcHHHHHHHHHHH
Q 024618 183 TQANSVQSADAILAYQRAL 201 (265)
Q Consensus 183 ~~~~~~~~~~A~~~~~~~~ 201 (265)
.|...++...|...++...
T Consensus 197 ~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 4567788888888777654
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.06 E-value=5.8 Score=34.94 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=70.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-CC-------------------
Q 024618 146 LGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDL-KP------------------- 205 (265)
Q Consensus 146 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~------------------- 205 (265)
+...+...|.++-+. +.+...|.++..-+.+|.++...|++++|..+|+++-.- ..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 555666777776543 455677888888899999999999999999999987421 00
Q ss_pred ---cchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcC-CCCc
Q 024618 206 ---NYVRAWANMGISYANQGMYEESVRYYVRALAMN-PKAD 242 (265)
Q Consensus 206 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~ 242 (265)
.....|..+..++.+.+-++-++...+.|++.. ++++
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 012356778899999999999999999999754 4444
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.97 E-value=3 Score=31.22 Aligned_cols=138 Identities=9% Similarity=-0.039 Sum_probs=75.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHH
Q 024618 83 VSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARM-----SPEDADVHIVLGVLYNLSRQYD 157 (265)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~ 157 (265)
.=|...+++++|++.+..... .+.+.|++..|.++..-.++. .|-+......+..++.....-+
T Consensus 41 ~Ry~~~~~~~eAidlL~~ga~-----------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~ 109 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQGAL-----------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE 109 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHH-----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC
Confidence 345566788888887765543 345556666665543333222 2334555556666654433211
Q ss_pred -HHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhc---CCcHH
Q 024618 158 -KAIESFQTALKL-------KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQ---GMYEE 226 (265)
Q Consensus 158 -~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~ 226 (265)
.=....+++++- .-.+|..+..+|..+...|++.+|..+|-.. +.+++..+..+-.-+... |...+
T Consensus 110 ~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 110 PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcch
Confidence 223444455432 1246888899999999999998888887521 122344444433333333 55555
Q ss_pred HHHHHHHH
Q 024618 227 SVRYYVRA 234 (265)
Q Consensus 227 A~~~~~~a 234 (265)
+--+.-++
T Consensus 187 ~dlf~~Ra 194 (312)
T 2wpv_A 187 VAEFFSRL 194 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444444
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.99 E-value=2 Score=27.81 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=24.1
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 19 RKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 19 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
.+|+-++-.+++...+...+-++..+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444444444443333344455555555555555555555555555544
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.42 E-value=4.6 Score=30.54 Aligned_cols=134 Identities=13% Similarity=0.095 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-------HH---------hhCCCCHHHHHHHHH-HHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQT-------AL---------KLKPQDYSLWNKLGA-TQA 185 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~---------~~~~~~~~~~~~l~~-~~~ 185 (265)
.+|+.+-.+.-...-.++..+..+|..+.+.+++.+|..+|-- .+ +..|.....+...+. .|.
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL 198 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYL 198 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4455555442223346789999999999999999999877621 00 112333444555544 466
Q ss_pred hhcCcHHHHHHHHHHHh----cCCc------------------chhh-HHHHHHHHHhcCC---cHHHHHHHHHHHhcCC
Q 024618 186 NSVQSADAILAYQRALD----LKPN------------------YVRA-WANMGISYANQGM---YEESVRYYVRALAMNP 239 (265)
Q Consensus 186 ~~~~~~~A~~~~~~~~~----~~~~------------------~~~~-~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 239 (265)
..++...|...++...+ .+|. .|.. +..+-..-.+.+. +..-.+.|+..++.+|
T Consensus 199 ~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~ 278 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELN 278 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcH
Confidence 78888888876555443 2221 2211 1122223334443 4445566667777777
Q ss_pred -CCchhHHHHHHHHHHhC
Q 024618 240 -KADNAWQYLRISLRYAG 256 (265)
Q Consensus 240 -~~~~~~~~l~~~~~~~~ 256 (265)
........+|..|+...
T Consensus 279 ~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 279 GIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp TTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 77788888999988653
No 269
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.66 E-value=0.0048 Score=48.80 Aligned_cols=171 Identities=14% Similarity=0.123 Sum_probs=124.2
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhh
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNE 88 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 88 (265)
+.-..|..++..|.|+.|.-+|..+ + -|..|+.++..+|+|..|++..+++ +++.+|-....+....
T Consensus 146 ~iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 146 HIQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 212 (624)
T ss_dssp CTHHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHS
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCc
Confidence 3456788888999988887776643 1 2456788889999999888877665 5566777777777777
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024618 89 LEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADVARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALK 168 (265)
Q Consensus 89 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 168 (265)
+++.-|-.+--.++ ..|+...-+...|...|.+++-+.+++.++.+...+...+..+|.+|.+- ++++-++.++--..
T Consensus 213 ~EfrLAqicGLniI-vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 213 KEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp CTTTTTTHHHHHHH-CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred hHHHHHHHhcchhc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 77766655443333 45666666688889999999999999999999888999999999988764 46666666543221
Q ss_pred h--CCC------CHHHHHHHHHHHHhhcCcHHHH
Q 024618 169 L--KPQ------DYSLWNKLGATQANSVQSADAI 194 (265)
Q Consensus 169 ~--~~~------~~~~~~~l~~~~~~~~~~~~A~ 194 (265)
. -|. ....|..+..+|..-.+++.|.
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 122 2356888888888888888775
No 270
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=86.83 E-value=4.5 Score=26.87 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=46.5
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCC--h-H---HHHH---HHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPEN--S-E---GWRL---LGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~---~~~~---l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.+..|..++..|+|-+|-+.++.+....+.. . . .+.. .|..+...|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677889999999999999999998876544 1 2 2222 344567789999999999999774
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.64 E-value=16 Score=32.21 Aligned_cols=112 Identities=7% Similarity=-0.188 Sum_probs=69.3
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHHH
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYADV 125 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 125 (265)
.+...+...|.++-+. ..+..-|.++..-+.+|.++...|++++|..+|+++-.--....... .. ....
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~-~~------~~~~ 883 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AV------LREF 883 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSC-GG------GHHH
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccc-cc------hhhh
Confidence 3556667777776543 45677788888889999999999999999999998753211111000 00 0111
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024618 126 ARLFVEAARMSPEDADVHIVLGVLYNLSRQYDKAIESFQTALKL 169 (265)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 169 (265)
...+. ..+........|..++.++...+-++-++...+.|++.
T Consensus 884 ~~ll~-~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 884 QEIAE-KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHH-HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhccC-cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11110 11111112346667777888888888888888888864
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=85.54 E-value=3.1 Score=23.40 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCChHH
Q 024618 46 LLGIAHAENDDDQQAIAAMMRAHEAEPTNLE 76 (265)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 76 (265)
.+|..+...|++++|..+|-+|+...|.-.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3566666666666666666666666655433
No 273
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=85.08 E-value=4.2 Score=32.31 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhc-CCC
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALAM-NPK 240 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~ 240 (265)
..+.+|.++...++|.+|.+.+..|+.. .|.
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 4455666666666666666666666655 443
No 274
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=82.79 E-value=4.7 Score=23.99 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=40.9
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChH----HHH--HHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSE----GWR--LLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
.+..|..++..|+|=+|=+.++.+....|.... .+. ..|..+...|+. |...+.+++.
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 467888999999999999999999888754211 222 233445566776 7788887766
No 275
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=82.56 E-value=1.5 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=20.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHH
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVL 35 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 35 (265)
.+++|+.+...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35678888888888888888888765
No 276
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=81.77 E-value=4.6 Score=28.08 Aligned_cols=53 Identities=8% Similarity=-0.151 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchh-----hHHHHHHHHHhcCCcHH
Q 024618 174 YSLWNKLGATQANSVQSADAILAYQRALDLKPNYVR-----AWANMGISYANQGMYEE 226 (265)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 226 (265)
....+.+|.++...++|.+|.+.+..|+...|.... ++..+.-+-.-+|+...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456788899999999999999999999988776532 23334444456677653
No 277
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=80.14 E-value=6 Score=22.23 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=22.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQDYS 175 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 175 (265)
..+|..+...|++++|..+|-+|+...|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45677777777777777777777777665433
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.79 E-value=14 Score=25.62 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCC
Q 024618 140 ADVHIVLGVLYNLSRQYDKAIESFQTALKL--KPQDYSLWNKLGATQANSVQSADAILAYQRALDLKP 205 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 205 (265)
..+|...+..+ ..+...++..+|.-+... ....+..|...|..+...|++.+|.+.|+..++..-
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45666666654 233456777777776654 445567777888888889999999999999887653
No 279
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.85 E-value=3.6 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.1
Q ss_pred hhhHHHHHcCChHHHHHHHHHHH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEV 34 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~ 34 (265)
.++..+...|+|++||.+.+++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHH
Confidence 45778888888888888877764
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.39 E-value=5.1 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHH
Q 024618 212 ANMGISYANQGMYEESVRYYVRA 234 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a 234 (265)
...+..+...|+|++|+++.+++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555555555544444
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=76.14 E-value=12 Score=26.03 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024618 141 DVHIVLGVLYNLSRQYDKAIESFQTALKLKPQD 173 (265)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 173 (265)
...+.+|.++...++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 445666677777777777777777777665554
No 282
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=75.27 E-value=16 Score=28.01 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
...+..+|..+++.+++.+|+..+-.+-
T Consensus 296 vYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 296 IYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 4455556666666666666666665543
No 283
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=73.40 E-value=11 Score=29.94 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=60.3
Q ss_pred hhchHHHHHHHHHHHhcCCCC------------H----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C--------
Q 024618 119 SLYYADVARLFVEAARMSPED------------A----DVHIVLGVLYNLSRQYDKAIESFQTALKLKP--Q-------- 172 (265)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~~~~------------~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-------- 172 (265)
....+++...+.++....-++ - .....+-.+|++.|+..-+...++..-...+ .
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 344667777777777652111 1 1233445788899998888888865544322 1
Q ss_pred CHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc-CCcc
Q 024618 173 DYSLWNKLGATQANSVQSADAILAYQRALDL-KPNY 207 (265)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 207 (265)
.....+.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 1356888999999999999999999999988 6643
No 284
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=72.19 E-value=5.5 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=13.7
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 024618 47 LGIAHAENDDDQQAIAAMMRAHEAEPT 73 (265)
Q Consensus 47 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 73 (265)
+|..+...|+++.|+.+|-+|+...|.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 444445555555555555555554443
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=71.46 E-value=7 Score=32.82 Aligned_cols=49 Identities=14% Similarity=-0.086 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhhhhhh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHTNELE 90 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 90 (265)
+.....|...+..|+|.-|.+....++..+|++..+...++.++.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666655555555555553
No 286
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.07 E-value=31 Score=26.10 Aligned_cols=134 Identities=14% Similarity=-0.021 Sum_probs=74.4
Q ss_pred ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhchHH-HHHHHHHHHhcCCCCHHHHHHHHH-HH
Q 024618 73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPKYGTIAPPELSDSLYYAD-VARLFVEAARMSPEDADVHIVLGV-LY 150 (265)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~-~~ 150 (265)
.+++.+..+|..+...+++.+|..+|- +..++ . .+. |.-.++-..+..|.....+...+. .|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~-s-------------~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~y 197 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKE-S-------------PEVLARMEYEWYKQDESHTAPLYCARAVLPY 197 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTT-H-------------HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCc-h-------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 357788888888888888888887762 11100 0 001 111122222234555666666654 56
Q ss_pred HHccCHHHHHHHHHHHHh----hCC------------------CCHHH-HHHHHHHHHhhcC---cHHHHHHHHHHHhcC
Q 024618 151 NLSRQYDKAIESFQTALK----LKP------------------QDYSL-WNKLGATQANSVQ---SADAILAYQRALDLK 204 (265)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~----~~~------------------~~~~~-~~~l~~~~~~~~~---~~~A~~~~~~~~~~~ 204 (265)
+..++...|...+....+ .+| ..|.. +..+...-...+. +..-.+.|+..++.+
T Consensus 198 L~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd 277 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNEL 277 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 788999999887665543 223 22321 1222223333443 334445566666666
Q ss_pred C-cchhhHHHHHHHHHhcC
Q 024618 205 P-NYVRAWANMGISYANQG 222 (265)
Q Consensus 205 ~-~~~~~~~~l~~~~~~~g 222 (265)
| .....+..+|..|+...
T Consensus 278 ~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 278 NGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp TTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 6 55677777888887653
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=71.01 E-value=6.4 Score=22.45 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 212 ANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
..+|+=|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4577777778888888888887765
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=70.49 E-value=5.5 Score=23.02 Aligned_cols=13 Identities=15% Similarity=-0.227 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 024618 24 SEAVLALEAEVLK 36 (265)
Q Consensus 24 ~~A~~~~~~~~~~ 36 (265)
++|+.+..++++.
T Consensus 17 ~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 17 EMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666543
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=69.50 E-value=8.1 Score=22.99 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=21.5
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPE 39 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 39 (265)
+.+|..+...|+++.|+..|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45678888888888888877777776664
No 290
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=68.64 E-value=26 Score=24.52 Aligned_cols=64 Identities=16% Similarity=0.026 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhCCCChHH--------HHHHHHHHhhcCcHHHHHHHHHHHHhcCCChHHHHhhhhhhhh
Q 024618 23 LSEAVLALEAEVLKNPENSEG--------WRLLGIAHAENDDDQQAIAAMMRAHEAEPTNLEVLLSLGVSHT 86 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 86 (265)
.+.|+.+++.+-+..+-.... -...-.++.+.|.|++|.+.+++.+..+|.+......|..+-.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 567888888776665432221 1223445788999999999999999887766656555554443
No 291
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=68.18 E-value=6.5 Score=22.69 Aligned_cols=13 Identities=15% Similarity=-0.243 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 024618 24 SEAVLALEAEVLK 36 (265)
Q Consensus 24 ~~A~~~~~~~~~~ 36 (265)
++|+.+..++++.
T Consensus 9 ~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 9 DMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666554
No 292
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=66.51 E-value=29 Score=27.16 Aligned_cols=44 Identities=5% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHhc-----CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 193 AILAYQRALDL-----KPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 193 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
++..|.+++.. ...+...|..+|..+++.+++.+|+..+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 44445555433 233455666677777777777777777766543
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.63 E-value=9.9 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=11.7
Q ss_pred HHHHhcCCcHHHHHHHHHHHh
Q 024618 216 ISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.-.-+.|++++|+.+|..+++
T Consensus 27 ve~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 27 VKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 333455666666666655544
No 294
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=63.54 E-value=29 Score=22.92 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=49.4
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCcHHH-HHHHHHHHHhcCCChHHHHhhhhhhhhhhh
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDDDQQ-AIAAMMRAHEAEPTNLEVLLSLGVSHTNEL 89 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 89 (265)
+..+...+-..+|.+.+..++.. ....-.....+.+|..|.....+.. -.+.....+.+..+ -.+.+=+++...|
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~~-~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---e~yL~YWIyiGRg 87 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLEDY-APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---EQYMLYWIYIGRS 87 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTTS-CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHhcC-ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---HHHHHHHHHHcCC
Confidence 44577777888888888877654 1111235677888888888766542 23333333322221 1222335566678
Q ss_pred hHHHHHHHHH
Q 024618 90 EQAAALKYLY 99 (265)
Q Consensus 90 ~~~~A~~~~~ 99 (265)
++++|+..-.
T Consensus 88 ~~~eAlDiA~ 97 (161)
T 2ynq_A 88 QSEEALELAR 97 (161)
T ss_dssp CHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 8888876554
No 295
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.49 E-value=12 Score=21.55 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=9.3
Q ss_pred HhcCCcHHHHHHHHHHHh
Q 024618 219 ANQGMYEESVRYYVRALA 236 (265)
Q Consensus 219 ~~~g~~~~A~~~~~~a~~ 236 (265)
-+.|++++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 445555555555554443
No 296
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=61.93 E-value=18 Score=30.45 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=29.2
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAEND 55 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 55 (265)
+..|+..+..|+|.-|..+.+.++..+|++..+...++.++.++|
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445666666666766766666666666666666666666665554
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=60.78 E-value=34 Score=22.72 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHH------HHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKPQD---YSLW------NKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
+.-+..++..|+|=+|-+.++.+....+.. ...+ ...|..+...|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445666777899999999999998876544 1222 22333456789999999999988763
No 298
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=58.91 E-value=34 Score=22.24 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=44.5
Q ss_pred HHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhc
Q 024618 182 ATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYVRALAM 237 (265)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 237 (265)
.....+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 35567777777777777766667777899999999999999999999999998775
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.70 E-value=42 Score=23.22 Aligned_cols=79 Identities=9% Similarity=0.055 Sum_probs=55.5
Q ss_pred HHHHHHHhhCC------CC---HHHHHHHHHHHHhhcCcHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhcCCcHHHHH
Q 024618 161 ESFQTALKLKP------QD---YSLWNKLGATQANSVQSADAILAYQRALDL--KPNYVRAWANMGISYANQGMYEESVR 229 (265)
Q Consensus 161 ~~~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (265)
..+++++.... ++ ..+|...+..+ ..+...++...|.-.... ....+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 56777776432 23 34555555544 233356788888777654 45556778888999999999999999
Q ss_pred HHHHHHhcCCC
Q 024618 230 YYVRALAMNPK 240 (265)
Q Consensus 230 ~~~~a~~~~~~ 240 (265)
.|+.+++....
T Consensus 137 Vy~~GI~~~A~ 147 (202)
T 3esl_A 137 LLELGAENNCR 147 (202)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHHcCCc
Confidence 99999987543
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=58.43 E-value=45 Score=23.41 Aligned_cols=35 Identities=6% Similarity=-0.010 Sum_probs=18.0
Q ss_pred HHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHH
Q 024618 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGIS 217 (265)
Q Consensus 183 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 217 (265)
++.+.|.+++|.+.+++.+..+|.+......|..+
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555666666666666655544443344434333
No 301
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=57.05 E-value=29 Score=27.54 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 24 SEAVLALEAEVLKNPE--------NSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
+..+.-++.++..-|. ...++..+|++|+..|++++|....++++..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3344445555544332 2347788899999999999999999998863
No 302
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=56.59 E-value=71 Score=25.13 Aligned_cols=44 Identities=5% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHHHHhc-----CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 193 AILAYQRALDL-----KPNYVRAWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 193 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
++..|++++.. ...+...|..+|-.+.+.+++.+|+..+..+-.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 34455555543 223345566677777777777777777766644
No 303
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=55.78 E-value=15 Score=21.17 Aligned_cols=12 Identities=0% Similarity=0.127 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q 024618 24 SEAVLALEAEVL 35 (265)
Q Consensus 24 ~~A~~~~~~~~~ 35 (265)
++|+.+..++++
T Consensus 11 ~~A~~l~~~Av~ 22 (85)
T 2v6x_A 11 TKGIELVQKAID 22 (85)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666653
No 304
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=55.63 E-value=69 Score=24.68 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 159 AIESFQTALKL-----KPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 159 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
++..|.+++.. ...+...+..+|-.+++.+++.+|++.+-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 66666666653 2344566888999999999999999999887643
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=55.57 E-value=12 Score=25.72 Aligned_cols=37 Identities=5% Similarity=-0.043 Sum_probs=17.4
Q ss_pred HHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 024618 183 TQANSVQSADAILAYQRALDLKPNYVRAWANMGISYA 219 (265)
Q Consensus 183 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (265)
++.+.|.+++|.+.+++.+..++++......|..+-.
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4556666666666666666555555444444444333
No 306
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=52.67 E-value=1.5e+02 Score=27.60 Aligned_cols=133 Identities=9% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc------------------------------------CHHHHHHHHHHH
Q 024618 123 ADVARLFVEAARMSPEDADVHIVLGVLYNLSR------------------------------------QYDKAIESFQTA 166 (265)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------------~~~~A~~~~~~~ 166 (265)
+++.++|+++++..|++..++..+...+.... ..++-++..+++
T Consensus 1124 ~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ad~v 1203 (1354)
T 3lxu_X 1124 EMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLADKV 1203 (1354)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHH
Q ss_pred HhhCCCC------------------------------HHHHHH----HHHHHHhhcCcHHHHHHHHHHHhc-----CCcc
Q 024618 167 LKLKPQD------------------------------YSLWNK----LGATQANSVQSADAILAYQRALDL-----KPNY 207 (265)
Q Consensus 167 ~~~~~~~------------------------------~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~ 207 (265)
+..-..+ .+++.. ++.........++....+++.... ++.+
T Consensus 1204 i~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d 1283 (1354)
T 3lxu_X 1204 IQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDAND 1283 (1354)
T ss_dssp TCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTS
T ss_pred HHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCC
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhC
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAG 256 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 256 (265)
..+.....+-....|+|..|++++.++++-.|. .+.+..++.++..+|
T Consensus 1284 ~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1284 SKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT-RDHFVELAAINGALG 1331 (1354)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHS
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcC
No 307
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=51.58 E-value=34 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
..++..+|++|+..|+|++|....++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34777889999999999999999988886
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.19 E-value=67 Score=22.67 Aligned_cols=48 Identities=6% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhc--CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCC
Q 024618 192 DAILAYQRALDL--KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNP 239 (265)
Q Consensus 192 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 239 (265)
++...|.-.... ....+..|...|..+...|++.+|.+.|+..++..-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444555544433 334455566666677777777777777777776543
No 309
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.81 E-value=19 Score=22.38 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHH
Q 024618 23 LSEAVLALEAEVL 35 (265)
Q Consensus 23 ~~~A~~~~~~~~~ 35 (265)
.+.|+.++.++++
T Consensus 15 l~kAi~lv~~Ave 27 (117)
T 2cpt_A 15 LQKAIDLASKAAQ 27 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777764
No 310
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=48.77 E-value=38 Score=27.07 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 24 SEAVLALEAEVLKNPE--------NSEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 24 ~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
+..++-++.++..-|. ...++..+|++|+..|+|++|....++++..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3444555555544342 2347788899999999999999999999864
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.62 E-value=88 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.6
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhC
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKN 37 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~ 37 (265)
++.|..++..|++++|+..|+.++..-
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 567888999999999999999998754
No 312
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=47.44 E-value=67 Score=25.83 Aligned_cols=30 Identities=10% Similarity=-0.112 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEAE 71 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 71 (265)
.++..+|++|+..+++++|....++++...
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 477889999999999999999999998753
No 313
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=47.08 E-value=37 Score=19.82 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=14.6
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHH
Q 024618 12 KEGQELFRKGLLSEAVLALEAEVL 35 (265)
Q Consensus 12 ~~~~~~~~~~~~~~A~~~~~~~~~ 35 (265)
..|..+++.++|.+|..+|+++..
T Consensus 58 ~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 58 AEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHc
Confidence 345556666666666666666643
No 314
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=52.69 E-value=4.1 Score=34.24 Aligned_cols=47 Identities=23% Similarity=0.128 Sum_probs=29.8
Q ss_pred chhhhHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHhhcCc
Q 024618 10 PLKEGQELFRKGLLSEAVLALEAEVLKNPENSEGWRLLGIAHAENDD 56 (265)
Q Consensus 10 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 56 (265)
.+.+|+..+..|+|.-|..+.+.++..+|++..+...++.++.++|.
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 34556666666666666666666666666666666666666665554
No 315
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.73 E-value=24 Score=24.36 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=26.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024618 145 VLGVLYNLSRQYDKAIESFQTALKLKPQDYSLWNKLGATQAN 186 (265)
Q Consensus 145 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 186 (265)
....++.+.|.+++|.+.+++....++.+......|..+-.+
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 345678899999999999999998877766555555444333
No 316
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=46.50 E-value=41 Score=19.46 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHH
Q 024618 86 TNELEQAAALKYLY 99 (265)
Q Consensus 86 ~~~~~~~~A~~~~~ 99 (265)
-..|++++|+.+|.
T Consensus 27 D~~g~y~eAl~lY~ 40 (86)
T 4a5x_A 27 DSESRYPQALVCYQ 40 (86)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34566666666553
No 317
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=45.84 E-value=83 Score=22.81 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCCCh-HHHHhhhhhhhhh-hhhHHHHHHHH
Q 024618 40 NSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEPTN-LEVLLSLGVSHTN-ELEQAAALKYL 98 (265)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~ 98 (265)
+.+-+..++.+.-+.++|++.+.+.+++.+.++.- .+-...++.+|-. .|....+.+.+
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRii 90 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRII 90 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHH
Confidence 34566777888888899999999999888876643 3444555555532 34444444444
No 318
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=44.80 E-value=75 Score=25.17 Aligned_cols=26 Identities=8% Similarity=-0.094 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 176 LWNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
++..++.+++..|++++|+...++++
T Consensus 192 a~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 192 ARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 319
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.42 E-value=1.4e+02 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=21.2
Q ss_pred hHHHHHHHH--HhcCCcHHHHHHHHHHHhcCCCC
Q 024618 210 AWANMGISY--ANQGMYEESVRYYVRALAMNPKA 241 (265)
Q Consensus 210 ~~~~l~~~~--~~~g~~~~A~~~~~~a~~~~~~~ 241 (265)
.+..+..++ +..|+++.|++.+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344455554 789999999999988 4455544
No 320
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.34 E-value=65 Score=21.12 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhc--CCcchhhHHHHHHHHHhcCCcHHHHHHHHHHHhcCCC
Q 024618 192 DAILAYQRALDL--KPNYVRAWANMGISYANQGMYEESVRYYVRALAMNPK 240 (265)
Q Consensus 192 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 240 (265)
++...|.-.... ....+..|...|..+...|++.+|.+.|+..++....
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 366666665544 3444566667777888888888888888888876443
No 321
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.85 E-value=1.2e+02 Score=23.59 Aligned_cols=25 Identities=8% Similarity=-0.198 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHH
Q 024618 177 WNKLGATQANSVQSADAILAYQRAL 201 (265)
Q Consensus 177 ~~~l~~~~~~~~~~~~A~~~~~~~~ 201 (265)
...++..+...|+.++|...++++-
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444555555666666655555553
No 322
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=42.32 E-value=83 Score=24.99 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHhCCccccc
Q 024618 243 NAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~A~ 262 (265)
+++...|.++.++|+..+|.
T Consensus 339 Ev~Li~AEA~~~~g~~~~A~ 358 (461)
T 3kez_A 339 EAYLNAAEAAVQTGDNAKAV 358 (461)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCchHHH
Confidence 45666666666666655554
No 323
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.56 E-value=56 Score=19.29 Aligned_cols=55 Identities=9% Similarity=-0.133 Sum_probs=31.2
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHhcCCcch-h-----hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 180 LGATQANSVQSADAILAYQRALDLKPNYV-R-----AWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 180 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
.|..++..|+|-+|-+.++......|... . +....|..+.+.|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34555566777777777776666554421 1 122234444556666 7777777765
No 324
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=40.12 E-value=1.4e+02 Score=23.65 Aligned_cols=45 Identities=7% Similarity=0.177 Sum_probs=33.1
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 159 AIESFQTALKL-----KPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 159 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
++.+|.+++.. ...+...+..+|-.+++.+++.+|+..+-.+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 55666666543 2344566888999999999999999999877543
No 325
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=38.83 E-value=1e+02 Score=24.80 Aligned_cols=28 Identities=14% Similarity=-0.024 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
.++..++.+|+.++++++|+...++++.
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555666666666666666555553
No 326
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.38 E-value=60 Score=19.06 Aligned_cols=13 Identities=23% Similarity=0.054 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHH
Q 024618 87 NELEQAAALKYLY 99 (265)
Q Consensus 87 ~~~~~~~A~~~~~ 99 (265)
..|++++|+.+|.
T Consensus 27 ~~g~y~eAl~~Y~ 39 (93)
T 1wfd_A 27 AESRYQQALVCYQ 39 (93)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 4566666666653
No 327
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=37.84 E-value=92 Score=24.85 Aligned_cols=28 Identities=14% Similarity=-0.046 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 175 SLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
.++..++.+|+..|++++|+...++++.
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4555666666666666666666666654
No 328
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.70 E-value=72 Score=19.76 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHHHhcC
Q 024618 56 DDQQAIAAMMRAHEAE 71 (265)
Q Consensus 56 ~~~~A~~~~~~~~~~~ 71 (265)
.+++|..+..+++.++
T Consensus 18 ~h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4555666666666554
No 329
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=35.21 E-value=1.3e+02 Score=21.87 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhcC--CC-hHHHHhhhhhhhhh-hhhHHHHHHHH
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEAE--PT-NLEVLLSLGVSHTN-ELEQAAALKYL 98 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~-~~~~~~A~~~~ 98 (265)
.+-+..++.+.-+.++|++.+.+.+++.+.+ +. +.+-...++.+|-. .|....+.+.+
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRii 69 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRII 69 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3455677888888899999999999988876 43 34444445555432 23344444443
No 330
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.15 E-value=1.3e+02 Score=24.00 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.++..+|++|+..|++++|....++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 47788999999999999999999999864
No 331
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=33.22 E-value=58 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHE 69 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 69 (265)
.++..+|++|+..+++++|+...++++.
T Consensus 181 aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 181 AAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3777889999999999999998888874
No 332
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=32.94 E-value=1.1e+02 Score=24.82 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.++..+|++++..+++++|....++++..
T Consensus 183 aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 183 AAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999999864
No 333
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=32.86 E-value=94 Score=19.62 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHccCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 147 GVLYNLSRQYDKAIESFQTA---LKLKPQDYSLWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
+.+++..++.+..+..++.. ++..|.. .........--.+..+|...+++...
T Consensus 47 Srlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566777777777777655 3334543 23333333334456667666666553
No 334
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=37.20 E-value=10 Score=31.87 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhCCccc
Q 024618 211 WANMGISYANQGMYEESVRYYVRALAMNPKADNAWQYLRISLRYAGRYPN 260 (265)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 260 (265)
....+...+..|+|.-|.+....++..+|++..+...++.+|.++|-..+
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 34566777788999999999999999999999999999999998886554
No 335
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.01 E-value=2.1e+02 Score=22.68 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhc
Q 024618 140 ADVHIVLGVLYNLSR--QYDKAIESFQTALKL-----KPQDYSLWNKLGATQANSVQSADAILAYQRALDL 203 (265)
Q Consensus 140 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 203 (265)
|.++.++|.+-...- ..+.++.+|++++.. .......+..+|-.+.+.+++.+|++.+-.+-..
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 344444554433221 122366677777653 3344567888899999999999999999887643
No 336
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.88 E-value=1.2e+02 Score=19.89 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHHh--cCCChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618 60 AIAAMMRAHE--AEPTNLEVLLSLGVSHTNELEQAAALKYLYGWLRHHPK 107 (265)
Q Consensus 60 A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 107 (265)
+..+|.-+.. +....+..|...|..+...|++.+|...|+.+++....
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 6666666655 45566788888889999999999999999999886544
No 337
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.70 E-value=96 Score=18.78 Aligned_cols=75 Identities=13% Similarity=-0.026 Sum_probs=43.1
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHHH
Q 024618 153 SRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYYV 232 (265)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (265)
....++|..+-+ .+...+....+-......+..+|+|++|....+.. + .|+.--.++.+-.+.|--+++...+.
T Consensus 19 ~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 19 QHCHEEALCIAE-WLERLGQDEAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp TTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 334555554443 34444443333344455677788888887655432 1 34455556777788888777777764
Q ss_pred H
Q 024618 233 R 233 (265)
Q Consensus 233 ~ 233 (265)
+
T Consensus 93 ~ 93 (115)
T 2uwj_G 93 G 93 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 338
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=27.64 E-value=2e+02 Score=23.29 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHh
Q 024618 176 LWNKLGATQANSVQSADAILAYQRALD 202 (265)
Q Consensus 176 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 202 (265)
++..++.+++..+++++|....++++.
T Consensus 184 A~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 184 AYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 339
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.53 E-value=2.1e+02 Score=22.09 Aligned_cols=56 Identities=7% Similarity=-0.075 Sum_probs=38.8
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcC-----------------CChHHHHhhhhhhhhhhhhHHHHHHHHHHHHh
Q 024618 48 GIAHAENDDDQQAIAAMMRAHEAE-----------------PTNLEVLLSLGVSHTNELEQAAALKYLYGWLR 103 (265)
Q Consensus 48 ~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 103 (265)
..+.....+.++|.+++++..... .....+...++..|...|+.++|...++++-.
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566788999999998774321 01234556677888888999988888876653
No 340
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=26.30 E-value=1.5e+02 Score=21.69 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHh-----c--CCcchh---hHHHHHHHHH-hcCCcHHHHHHHHHHHhc
Q 024618 191 ADAILAYQRALD-----L--KPNYVR---AWANMGISYA-NQGMYEESVRYYVRALAM 237 (265)
Q Consensus 191 ~~A~~~~~~~~~-----~--~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~a~~~ 237 (265)
+.|...|+.|.+ + .|.+|- ...+.+..|+ .+++.++|....++++..
T Consensus 169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445556665543 3 455542 2334444444 578999999988888765
No 341
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=24.59 E-value=1.6e+02 Score=21.43 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=8.9
Q ss_pred cCcHHHHHHHHHHHHh
Q 024618 54 NDDDQQAIAAMMRAHE 69 (265)
Q Consensus 54 ~~~~~~A~~~~~~~~~ 69 (265)
.++.++|....+++++
T Consensus 210 ln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 210 LGNPEGAMKFANRAIQ 225 (268)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4555555555555544
No 342
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=24.15 E-value=61 Score=18.99 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=10.4
Q ss_pred cCcHHHHHHHHHHHhcC
Q 024618 188 VQSADAILAYQRALDLK 204 (265)
Q Consensus 188 ~~~~~A~~~~~~~~~~~ 204 (265)
..++.|..+..+++..+
T Consensus 11 ~~h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 11 VFHKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34566666666666554
No 343
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.72 E-value=2.4e+02 Score=21.31 Aligned_cols=100 Identities=15% Similarity=0.020 Sum_probs=53.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCC----CC-H---HH--------HHHHHHHHHh-hcCc--HHHHHHHHHH----
Q 024618 144 IVLGVLYNLSRQYDKAIESFQTALKLKP----QD-Y---SL--------WNKLGATQAN-SVQS--ADAILAYQRA---- 200 (265)
Q Consensus 144 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~---~~--------~~~l~~~~~~-~~~~--~~A~~~~~~~---- 200 (265)
...|.-+...|++++|+..|+.++..-| ++ . ++ .+.+|..... .... +...+.++-+
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT 197 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFT 197 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence 3456667888999999999998886532 11 1 11 1122221111 1110 1111111111
Q ss_pred -HhcCCcchh-hHHHHHHHHHhcCCcHHHHHHHHHHHhcCCCCch
Q 024618 201 -LDLKPNYVR-AWANMGISYANQGMYEESVRYYVRALAMNPKADN 243 (265)
Q Consensus 201 -~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 243 (265)
.++.|.+.. ++..--...++.++|..|..+.++.+++.|....
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~ 242 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPR 242 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence 122333322 2333334567889999999999999999986443
No 344
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.18 E-value=2e+02 Score=20.28 Aligned_cols=33 Identities=6% Similarity=-0.257 Sum_probs=18.1
Q ss_pred ChHHHHhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 024618 73 TNLEVLLSLGVSHTNELEQAAALKYLYGWLRHH 105 (265)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 105 (265)
..+..|...|..+...|++.+|...|+.+++..
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344455555555555566666655555555543
No 345
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=23.01 E-value=2.1e+02 Score=23.19 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 42 EGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
.++..+|++++..+++++|....++++..
T Consensus 199 aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 199 AALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 37788899999999999999999998863
No 346
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=23.00 E-value=89 Score=24.86 Aligned_cols=30 Identities=17% Similarity=-0.066 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 024618 41 SEGWRLLGIAHAENDDDQQAIAAMMRAHEA 70 (265)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 70 (265)
..++..+|++|+..+++++|....++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 347888999999999999999999999864
No 347
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.92 E-value=2.5e+02 Score=21.18 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHHhCC----CChHHHHHHHHHHhhcCcHHHHHHHHHHHHhcCC---ChHHHHhhhh-
Q 024618 11 LKEGQELFRKGLLSEAVLALEAEVLKNP----ENSEGWRLLGIAHAENDDDQQAIAAMMRAHEAEP---TNLEVLLSLG- 82 (265)
Q Consensus 11 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la- 82 (265)
++.|..++..|++++|+..|+.++..-| ++..---.+-.+...-.+|--|+.+=..-.++.+ ++..-...|+
T Consensus 106 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAA 185 (320)
T 3mkr_B 106 LQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAA 185 (320)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHH
Q ss_pred --------------------hhhhhhhhHHHHHHHHHHHHhcCCC
Q 024618 83 --------------------VSHTNELEQAAALKYLYGWLRHHPK 107 (265)
Q Consensus 83 --------------------~~~~~~~~~~~A~~~~~~~~~~~~~ 107 (265)
...++.+++..|....++.+++.|.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 348
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=22.70 E-value=1.5e+02 Score=23.66 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHhCCccccc
Q 024618 243 NAWQYLRISLRYAGRYPNRG 262 (265)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~A~ 262 (265)
+++...|.++.++|+..+|.
T Consensus 362 EvlL~~AEA~~~~g~~~~A~ 381 (481)
T 3jq1_A 362 DVLLMLAEAYMNKGALDTSI 381 (481)
T ss_dssp HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhhCChHHHH
Confidence 45666666666666665554
No 349
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=22.63 E-value=1.3e+02 Score=18.28 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
+.....-+.-..+.|+|++|.+.++++-
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444445555566666666666666553
No 350
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.48 E-value=1.3e+02 Score=18.17 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 024618 208 VRAWANMGISYANQGMYEESVRYYVRAL 235 (265)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 235 (265)
+.....-+.-..+.|+|++|.+.++++-
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555566677776666666553
No 351
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=22.44 E-value=1.4e+02 Score=18.15 Aligned_cols=76 Identities=13% Similarity=-0.041 Sum_probs=43.9
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCcchhhHHHHHHHHHhcCCcHHHHHHH
Q 024618 152 LSRQYDKAIESFQTALKLKPQDYSLWNKLGATQANSVQSADAILAYQRALDLKPNYVRAWANMGISYANQGMYEESVRYY 231 (265)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (265)
.....++|..+-+ .+...+....+-......+..+|+|++|....+..- .|+.--.++.+-.+.|--+++...+
T Consensus 19 G~H~HqEA~tIAd-wL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 19 GNHYHEEANCIAE-WLHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 3345556554443 344444433333444556777888888877665322 3444455666777888777777666
Q ss_pred HH
Q 024618 232 VR 233 (265)
Q Consensus 232 ~~ 233 (265)
.+
T Consensus 93 ~~ 94 (116)
T 2p58_C 93 NR 94 (116)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 352
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=21.46 E-value=75 Score=14.71 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHhcC
Q 024618 56 DDQQAIAAMMRAHEAE 71 (265)
Q Consensus 56 ~~~~A~~~~~~~~~~~ 71 (265)
-|++|+..|+.+++..
T Consensus 17 ayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 17 AYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3677777777776643
No 353
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=21.42 E-value=1.3e+02 Score=17.48 Aligned_cols=29 Identities=3% Similarity=-0.064 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 024618 23 LSEAVLALEAEVLKNPENSEGWRLLGIAH 51 (265)
Q Consensus 23 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 51 (265)
++.|+.+++++-....++++.+...-.+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL 38 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEIL 38 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 56788888888777766777665544443
No 354
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=20.28 E-value=2.5e+02 Score=20.35 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=38.1
Q ss_pred cchhhhHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHhh-cCcHHHHHHHHHHH
Q 024618 9 NPLKEGQELFRKGLLSEAVLALEAEVLKNPE-NSEGWRLLGIAHAE-NDDDQQAIAAMMRA 67 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~~ 67 (265)
..+.+|...-+.++|++.+...+++++.+++ +.+-...+..+|-. .|....+...+...
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 4566778888889999999999988887765 34445555555532 34444455544433
No 355
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.02 E-value=1.2e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 024618 210 AWANMGISYANQGMYEESVRYYVRALA 236 (265)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 236 (265)
++..+|++|+.+|++++|....++++.
T Consensus 193 A~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 193 VNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 334445555555555555555554443
Done!