BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024619
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
Arabidopsis Thaliana
Length = 464
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/258 (80%), Positives = 232/258 (89%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
M+++EE VSTLL+N N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79 MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
ES CFTSGMAAL+AVTHL+ GEEIVAGDD+YGG+DRLLS+V P++GVV
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS 180
VKRVNT LDEVA+AIGP TKLVW+ESPTNPRQQI DIRKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 181 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240
PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 241 WICLRGVKTMALRVEKQQ 258
W+CLRG+KTMALR+EKQQ
Sbjct: 319 WLCLRGIKTMALRIEKQQ 336
>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|B Chain B, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|C Chain C, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|2NMP|D Chain D, Crystal Structure Of Human Cystathionine Gamma Lyase
pdb|3COG|A Chain A, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|B Chain B, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|C Chain C, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
pdb|3COG|D Chain D, Crystal Structure Of Human Cystathionase (Cystathionine
Gamma Lyase) In Complex With Dl-Propargylglycine
Length = 403
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 152/234 (64%), Gaps = 1/234 (0%)
Query: 25 ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
A+ P+ + TFKQ + ++ ++Y+RSGNPTR+ LE F SG+AA
Sbjct: 37 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
+THLL G++I+ DD+YGGT+R +V + G+ + V+ + + +AI P TKLVW
Sbjct: 97 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSPVLSRPLELGADIVMHSATKFIA 203
+E+PTNP Q++ DI A + H HG ++L VDN+ MSP RPL LGADI M+SATK++
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKH 270
>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase
pdb|3ELP|A Chain A, Structure Of Cystationine Gamma Lyase
pdb|3ELP|C Chain C, Structure Of Cystationine Gamma Lyase
pdb|3ELP|D Chain D, Structure Of Cystationine Gamma Lyase
Length = 410
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 152/234 (64%), Gaps = 1/234 (0%)
Query: 25 ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
A+ P+ + TFKQ + ++ ++Y+RSGNPTR+ LE F SG+AA
Sbjct: 41 AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVW 144
+THLL G++I+ DD+YGGT+R +V + G+ + V+ + + +AI P TKLVW
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 145 VESPTNPRQQICDIRKIAEMAHAHGALLL-VDNSIMSPVLSRPLELGADIVMHSATKFIA 203
+E+PTNP Q++ DI A + H HG ++L VDN+ MSP RPL LGADI M+SATK++
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257
GHSDV+ G+++V E L L FLQN+ G+ +P DC++C RG+KT+ +R+EK
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKH 274
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 156/253 (61%), Gaps = 5/253 (1%)
Query: 9 VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
++TL ++ DP GA+ P+Y T+T+ Q S E+ ++Y+R+ NPTR A E
Sbjct: 20 LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68 XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNT 126
F SGMAA + V LL G +VA DDLYGGT RL RV +T G+ V+
Sbjct: 80 EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 127 CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP 186
D +AI TK+VW+E+PTNP ++ DI IA +A HG L +VDN+ SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--RLAKELYFLQNAEGSGLAPFDCWICL 244
L LGAD+V+HSATK++ GHSD++ G+ AV G+ LA+++ FLQN+ G PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 245 RGVKTMALRVEKQ 257
RG+KT+ LR+
Sbjct: 259 RGLKTLPLRMRAH 271
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 152/260 (58%), Gaps = 6/260 (2%)
Query: 2 SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
+++E +T ++ D +G++ P+ + TFKQ S A G Y+Y+RS NP R+ L
Sbjct: 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61 ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
E F+SG A A + L G V+ D+YGGT R ++V GV
Sbjct: 61 ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA----LLLVDN 176
N L+++ I TKLVW+E+PTNP ++ DI+K+A++ H A +L+VDN
Sbjct: 121 TSFTNDL-LNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 177 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236
+ +SP +S PL GADIV+HSATK+I GHSDV+ GVLA + L + L FLQNA G+ +
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPS 239
Query: 237 PFDCWICLRGVKTMALRVEK 256
PFD W+ RG+KT+ LRV +
Sbjct: 240 PFDAWLTHRGLKTLHLRVRQ 259
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
S PK G+ V V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
LL+VDN+ MSP +PL+LGADIV+HS TK+I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQ 257
G ++PF+ W+ LRGVKT+ +R+E+
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERH 268
>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QHX|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes
pdb|3QI6|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|B Chain B, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|C Chain C, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
pdb|3QI6|D Chain D, Crystal Structure Of Cystathionine Gamma-Synthase Metb
(Cgs) From Mycobacterium Ulcerans Agy99
Length = 392
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 149/253 (58%), Gaps = 3/253 (1%)
Query: 8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
G++T ++ DP GA++ P+Y ++TF Q G Y+Y R+GNPTR ALE+
Sbjct: 17 GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66 XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124
F+SGMAA A+ +L G+ +V DD YGGT RL+ +V V V
Sbjct: 77 AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 125 NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS 184
DLD V +AI P T+L+WVE+PTNP I DI IA++ A +LVDN+ SP L
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244
+PL LGAD+V+HS T +I GHSDV+ G L E L + FLQN G+ PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 245 RGVKTMALRVEKQ 257
RG+KT+ LR+++
Sbjct: 257 RGLKTLVLRMQRH 269
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
S PK G+ V+ V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
LL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQ 257
G ++PF+ W+ LRGVKT+ +R+E+
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERH 268
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 155/268 (57%), Gaps = 11/268 (4%)
Query: 1 MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
MS G +T +++ + DP GALSTP++QT+TF SA E Y YTR
Sbjct: 1 MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52 SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
GNPT DALE SG++A+ + L G+ IV+ +YG T L
Sbjct: 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170
S PK G+ V V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 229
LL+VDN+ MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 230 AEGSGLAPFDCWICLRGVKTMALRVEKQ 257
G ++PF+ W+ LRGVKT+ +R+E+
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERH 268
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 154/261 (59%), Gaps = 11/261 (4%)
Query: 8 GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
G +T +++ + DP GALSTP++QT+TF SA E Y YTR GNPT D
Sbjct: 8 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59 ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
ALE SG++A+ + L G+ IV+ +YG T LS PK
Sbjct: 68 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
G+ V+ V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++ G ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQ 257
PF+ W+ LRGVKT+ +R+E+
Sbjct: 248 PFNAWLTLRGVKTLGIRMERH 268
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 153/261 (58%), Gaps = 11/261 (4%)
Query: 8 GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
G +T +++ + DP GALSTP++QT+TF SA E Y YTR GNPT D
Sbjct: 8 GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59 ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117
ALE SG++A+ + L G+ IV+ +YG T LS PK
Sbjct: 68 ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 118 GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
G+ V V+ +E+ +A+ P TK+V++E+P NP + DI +A +AH GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 178 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 236
MSP +PL+LGADIV+HS T +I GH DV+ G++ K E + + + L++ G ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 237 PFDCWICLRGVKTMALRVEKQ 257
PF+ W+ LRGVKT+ +R+E+
Sbjct: 248 PFNAWLTLRGVKTLGIRMERH 268
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 153/265 (57%), Gaps = 17/265 (6%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
T + LE+ SGM A+ + LL G+E++ G+ LYG T L
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
+ GV ++ V+ DL + +A+ P T++++ ESP NP + DI +A++A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
DN+ +P L RPLELGAD+V+HSATK+++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQ 257
+ L+P D + +RG+KT+ LR+++
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRH 269
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 152/265 (57%), Gaps = 17/265 (6%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
T + LE+ SGM A+ + LL G+E++ G+ LYG T L
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
+ GV ++ V+ DL + +A+ P T++++ ESP NP + DI +A++A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
DN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQ 257
+ L+P D + +RG+KT+ LR+++
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRH 269
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 9/236 (3%)
Query: 29 PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P++QT+TF S + + Y+R GNPT + E F SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
A+++ T L G+ ++AGD LYG T L + P+ G+ V ++T D+++V +A P
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
TK+V++ESP NP ++ DI+ IA + H GA L+VD + SP +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
K+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQ 260
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 152/265 (57%), Gaps = 17/265 (6%)
Query: 7 PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
PG +T ++ + +DP GAL P+YQTATF P+ A E + Y+R NP
Sbjct: 8 PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56 TRDALESXXXXXXXXXXXXCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVT 114
T + LE+ SGM A+ + LL G+E++ G+ LYG T L
Sbjct: 66 TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174
+ GV ++ V+ DL + +A+ P T++++ ESP NP + DI +A++A HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 232
DN+ +P L RPLELGAD+V+HSAT +++GH D+ AG++ V + L + L++ G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 233 SGLAPFDCWICLRGVKTMALRVEKQ 257
+ L+P D + +RG+KT+ LR+++
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRH 269
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 9/236 (3%)
Query: 29 PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P++QT+TF S + + Y+R GNPT + E F SGM
Sbjct: 25 PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW 139
A+++ T L G+ ++AGD LYG T L + P+ G+ V ++T D+++V +A P
Sbjct: 85 GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199
TK+V++ESP NP ++ DI+ IA + H GA L+VD + SP +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
+I GH DV+ GV + K + F + GS +AP D ++C RG+KT+ +R++
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQ 260
>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5E|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In
Complex With Propargylglycine
pdb|1E5F|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
pdb|1E5F|B Chain B, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis
Length = 404
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 147/259 (56%), Gaps = 11/259 (4%)
Query: 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
+T ++ + + D +GA P+YQT+TF + + G Y YTR GNPT LE
Sbjct: 9 ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 68
Query: 62 SXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV 120
+SGM A+AA V +L G+ +++ + LYG T L K G+
Sbjct: 69 GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 128
Query: 121 VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIM 179
V +NT EV + P TK+V+ E+P NP +I D+ ++ + AH+ G L++ DN+
Sbjct: 129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 188
Query: 180 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPF 238
SP+++ P++ G D+V+HSATK+I GH+DV+AG++ K + L + + +++ GS ++P
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248
Query: 239 DCWICLRGVKTMALRVEKQ 257
D W+ RG+ T+ +R++ +
Sbjct: 249 DAWLITRGLSTLNIRMKAE 267
>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|B Chain B, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|C Chain C, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
pdb|1CS1|D Chain D, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli
Length = 386
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 1/242 (0%)
Query: 18 NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
N+ + YG + P++ ++T+ E +DY+R GNPTRD ++
Sbjct: 15 NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78 SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
+GM+A+ VT + L G+ +VA D YGG+ RL + + V V+ D + +A+
Sbjct: 75 TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 196
KLV VESP+NP ++ DI KI +A GA+ +VDN+ +SP L PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 256
S T ++ GHSDV+AGV+ K + EL + N G FD ++ LRG++T+ R+E
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 257 QQ 258
Q
Sbjct: 255 AQ 256
>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|G Chain G, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1QGN|H Chain H, Cystathionine Gamma-Synthase From Nicotiana Tabacum
pdb|1I41|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I41|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Appa
pdb|1I43|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I43|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ppca
pdb|1I48|A Chain A, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|B Chain B, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|C Chain C, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|D Chain D, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|E Chain E, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|F Chain F, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|G Chain G, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|H Chain H, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|I Chain I, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|J Chain J, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|K Chain K, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
pdb|1I48|L Chain L, Cystathionine Gamma-Synthase In Complex With The Inhibitor
Ctcpo
Length = 445
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 25 ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
A++TP+ T+ + +E ++Y R GNPT LE
Sbjct: 76 AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77 TSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135
SGM A+ + L+ G IV D Y T + + PK G+ ++ D+ + A
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 136 IG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 194
+ L + ESPTNP + DI ++++ H GAL+ +D + +P+ + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
+HSATKF+ GH+DV+AG ++ +L E+ L + G L P ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 255 EKQQ 258
++Q
Sbjct: 315 QQQN 318
>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|B Chain B, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|C Chain C, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
pdb|3NDN|D Chain D, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase
From Mycobacterium Tuberculosis Covalently Bound To
Pyridoxal-5-
Length = 414
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 2/228 (0%)
Query: 30 LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
+Y +A + S A E Y Y+R GNPT E SGMAA+ ++
Sbjct: 55 VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 147
LLG G+ +VA L+G + S + P+ GV V+ DL + A+ T+ V+ E+
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 207
P+NP Q + DI + E+AHA GA +++DN +P+L + LG D+V++S T I G
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255
V+ G + E + + L G ++ F+ W+ L+G++T+A+RV+
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQ 282
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 109/182 (59%), Gaps = 3/182 (1%)
Query: 78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136
SGM A+AA V L G+ +++ D LYG T L K GV V ++ + +
Sbjct: 21 SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHL 80
Query: 137 GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIVM 195
P T++V+ E+P NP ++ DI + A +L +VDN+ SP+L+ PL+LG DIV+
Sbjct: 81 KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVV 140
Query: 196 HSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254
HSATK+I GH+DV+AG++ + + +AK + +++ G+ ++P D W+ RG T+ +RV
Sbjct: 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRV 200
Query: 255 EK 256
++
Sbjct: 201 KR 202
>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
O-Acetylhomoserine Sulfhydrylase In Methionine
Biosynthetic Pathway Of Wolinella Succinogenes
Length = 430
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 129/265 (48%), Gaps = 29/265 (10%)
Query: 21 DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
D +GAL TP+Y A F+ ++ E + Y+RS NPT + LE
Sbjct: 40 DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73 XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
SGMAA++ A+ L G+ +V D L+G T L + P G+ V+ V+ D
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 191
V A TKL+++E+ +NP+ Q+ D+ ++++ HA G L+VD ++ P L LG
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 231
DI + S+TKFI+G + GVL G K L FL A
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 232 GSGLAPFDCWICLRGVKTMALRVEK 256
G L+P + ++ G++TMALR+E+
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIER 304
>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
pdb|2CTZ|B Chain B, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8
Length = 421
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 119/271 (43%), Gaps = 42/271 (15%)
Query: 29 PLYQTAT--FKQPSATEN------GPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
P+Y T + FK P N Y+R NPT D LE SG
Sbjct: 24 PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGH 83
Query: 81 AA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL-DEVASAIGP 138
AA A+T L G+ IV+ +LYGGT + G+ V+ + + +E +
Sbjct: 84 AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE 143
Query: 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHS 197
T+ WVES NP I D+ +A+ A G L+VDN+ M L RPL GA +V HS
Sbjct: 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHS 203
Query: 198 ATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA--- 230
TK++ GH V+AG + G RL + EL F+ A
Sbjct: 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVD 263
Query: 231 ----EGSGLAPFDCWICLRGVKTMALRVEKQ 257
+G L PF+ W+ L G++T++LR E+
Sbjct: 264 GLRDQGQALGPFEAWVVLLGMETLSLRAERH 294
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 125/273 (45%), Gaps = 39/273 (14%)
Query: 21 DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
DP+GA+ P+Y A + ++ AT G Y Y R +PT ALE
Sbjct: 15 DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73 XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE 131
SG AA A L G+E+VA L+G T L +V GV V+ V+ + +
Sbjct: 74 AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEA 132
Query: 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELG 190
V A+ T+ V+VE+ NP + D+ +A +A G L+VDN+ + L RPL G
Sbjct: 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 191 ADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ--------------------- 228
A +V+ S T + +GH V+ G VL+ + E FLQ
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 229 -----NAEGSGLAPFDCWICLRGVKTMALRVEK 256
+ G L+PF+ ++ +G++T+ALRV +
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVAR 285
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 44 NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
NG Y R G T +L+ F G AA+A ++ + G+ ++ +
Sbjct: 51 NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
Y + S++ K GV + ++ + P TK+V++ESP + ++ D+ I
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
+ A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW 230
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
E+L + Y + G + +I RG++T+ +R+ +
Sbjct: 231 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHH 267
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 44 NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
NG Y R G T +L+ F G AA+A ++ + G+ ++ +
Sbjct: 71 NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 130
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
Y + S++ K GV + ++ + P TK+V++ESP + ++ D+ I
Sbjct: 131 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 190
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
+ A++++DN+ + VL + L+ G D+ + +ATK++ GHSD M G
Sbjct: 191 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCW 250
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
E+L + Y + G + +I RG++T+ +R+ +
Sbjct: 251 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHH 287
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 10/221 (4%)
Query: 44 NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
NG Y R G T +L+ F G AA+A ++ + G+ ++ +
Sbjct: 51 NGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTA 110
Query: 103 YGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
Y + S++ K GV + ++ + P TK+V++ESP + ++ D+ I
Sbjct: 111 YEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIV 170
Query: 163 EMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG--- 217
+ A++++DN+ + VL + L+ G D+ + +AT ++ GHSD M G
Sbjct: 171 AAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCNARCW 230
Query: 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQ 258
E+L + Y + G + +I RG++T+ +R+ +
Sbjct: 231 EQLRENAYLM----GQMVDADTAYITSRGLRTLGVRLRQHH 267
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 113 VTPKTGVVVKRVN-----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167
V KTG V+K V + DL+ + + TKLV V +N + +IA++AH
Sbjct: 138 VAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ 197
Query: 168 HGALLLVDNSIMSP 181
GA +LVD +P
Sbjct: 198 AGAKVLVDACQSAP 211
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181
S I T+LV V S + + D+R + ++ H GAL++VD+S +P
Sbjct: 160 SLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAP 207
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------TCDLDEVAS 134
A AA+T L+ G+E++ D Y ++ +G +VKR+ D E A+
Sbjct: 103 ALYAAITALVRNGDEVICFDPSYDSYAPAIAL----SGGIVKRMALQPPHFRVDWQEFAA 158
Query: 135 AIGPWTKLVWVESPTNP 151
+ T+LV + +P NP
Sbjct: 159 LLSERTRLVILNTPHNP 175
>pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii
Reveals Its Similarity In The Active Site To Kynurenine
Aminotransferases
Length = 370
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 78 SGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL--DEVASA 135
S + A++ ++ G+E++ + Y + + K CD + + A
Sbjct: 98 SSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVF-------CDFTVESLEEA 150
Query: 136 IGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175
+ TK + + SP+NP ++ D R+I E A+ + ++ D
Sbjct: 151 LSDKTKAIIINSPSNPLGEVID-REIYEFAYENIPYIISD 189
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 130 DEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDN 176
+++ AI P TKL+ +P+NP + ++R IA++A G +L D
Sbjct: 154 EQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE 203
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 75 CFTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
F++G MA L ++ L G GE ++ D +Y G + + + V + + DL
Sbjct: 129 VFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDL 183
Query: 130 DEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
D+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 76 FTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDLD 130
F++G MA L ++ L G GE ++ D +Y G + + + V + + DLD
Sbjct: 130 FSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDLD 184
Query: 131 EVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 KRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 75 CFTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
F++G MA L ++ L G GE ++ D +Y G + + + V + + DL
Sbjct: 130 VFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDL 184
Query: 130 DEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
D+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 233
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 75 CFTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
F++G MA L ++ L G GE ++ D +Y G + + + V + + DL
Sbjct: 129 VFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDL 183
Query: 130 DEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
D+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 75 CFTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
F++G MA L ++ L G GE ++ D +Y G + + + V + + DL
Sbjct: 130 VFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDL 184
Query: 130 DEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
D+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 185 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 233
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 75 CFTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
F++G MA L ++ L G GE ++ D +Y G + + + V + + DL
Sbjct: 129 VFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDL 183
Query: 130 DEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
D+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 75 CFTSG-MAALAAVTHLLGTGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVNTCDL 129
F++G MA L ++ L G GE ++ D +Y G + + + V + + DL
Sbjct: 129 VFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEI-----VRFRHNSVEDL 183
Query: 130 DEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177
D+ + KLV +E + I ++++ +A HGA++LVD +
Sbjct: 184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEA 232
>pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase
pdb|1YIZ|B Chain B, Aedes Aegypti Kynurenine Aminotrasferase
pdb|2R5C|A Chain A, Aedes Kynurenine Aminotransferase In Complex With Cysteine
Length = 429
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 104 GGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
GG R + KTG + + D +E+ + TK++ + +P NP ++ D ++
Sbjct: 146 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELE 205
Query: 163 EMAH--AHGALLLVDNSIMSPVLSRPLE 188
+A+ +L V + + ++ P E
Sbjct: 206 VVANLCKKWNVLCVSDEVYEHMVFEPFE 233
>pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase
pdb|1YIY|B Chain B, Aedes Aegypti Kynurenine Aminotransferase
pdb|2R5C|B Chain B, Aedes Kynurenine Aminotransferase In Complex With Cysteine
pdb|2R5E|A Chain A, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
pdb|2R5E|B Chain B, Aedes Kynurenine Aminotransferase In Complex With
Glutamine
Length = 429
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 104 GGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162
GG R + KTG + + D +E+ + TK++ + +P NP ++ D ++
Sbjct: 146 GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELE 205
Query: 163 EMAH--AHGALLLVDNSIMSPVLSRPLE 188
+A+ +L V + + ++ P E
Sbjct: 206 VVANLCKKWNVLCVSDEVYEHMVFEPFE 233
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 128 DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVD 175
DL+++ I P TK + + + NP + D + ++ E+A GA +L D
Sbjct: 143 DLEKLRQLIRPTTKXICINNANNPTGAVXDRTYLEELVEIASEVGAYILSD 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,600,872
Number of Sequences: 62578
Number of extensions: 286387
Number of successful extensions: 704
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 48
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)