Query 024619
Match_columns 265
No_of_seqs 148 out of 2049
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08861 cystathionine gamma-s 100.0 1.3E-38 2.9E-43 278.3 28.1 261 4-264 1-263 (388)
2 PLN02509 cystathionine beta-ly 100.0 2.8E-37 6.2E-42 274.2 26.3 259 6-264 84-342 (464)
3 PRK08114 cystathionine beta-ly 100.0 4.5E-37 9.8E-42 267.7 26.6 260 4-264 1-273 (395)
4 COG0626 MetC Cystathionine bet 100.0 8.8E-37 1.9E-41 262.6 26.4 259 6-264 5-275 (396)
5 TIGR01329 cysta_beta_ly_E cyst 100.0 1.7E-36 3.6E-41 265.4 27.5 254 11-264 3-256 (378)
6 PRK09028 cystathionine beta-ly 100.0 1.7E-36 3.7E-41 264.8 27.3 255 9-264 5-270 (394)
7 PRK05967 cystathionine beta-ly 100.0 2.2E-36 4.8E-41 263.7 26.0 255 9-264 13-273 (395)
8 PRK07671 cystathionine beta-ly 100.0 1E-35 2.2E-40 260.3 28.4 255 10-264 4-259 (377)
9 PRK06176 cystathionine gamma-s 100.0 7.9E-36 1.7E-40 261.0 27.7 254 11-264 5-259 (380)
10 TIGR01324 cysta_beta_ly_B cyst 100.0 7.5E-36 1.6E-40 260.6 26.5 243 21-264 12-259 (377)
11 TIGR02080 O_succ_thio_ly O-suc 100.0 1.2E-35 2.5E-40 260.2 27.8 257 8-264 3-261 (382)
12 PRK08045 cystathionine gamma-s 100.0 1.2E-35 2.6E-40 260.3 27.7 257 8-264 4-262 (386)
13 PRK08064 cystathionine beta-ly 100.0 1.4E-35 2.9E-40 260.7 28.0 260 5-264 3-263 (390)
14 PRK08247 cystathionine gamma-s 100.0 1.6E-35 3.4E-40 258.6 27.3 256 9-264 5-261 (366)
15 PRK07050 cystathionine beta-ly 100.0 2.8E-35 6E-40 258.8 26.9 258 7-264 8-275 (394)
16 PF01053 Cys_Met_Meta_PP: Cys/ 100.0 3.7E-36 8.1E-41 261.5 21.1 243 22-264 15-267 (386)
17 PRK06767 methionine gamma-lyas 100.0 3.4E-35 7.3E-40 258.1 27.2 261 4-264 1-271 (386)
18 PRK08248 O-acetylhomoserine am 100.0 4.6E-35 1E-39 259.5 26.5 263 2-264 2-306 (431)
19 PRK08776 cystathionine gamma-s 100.0 6.7E-35 1.4E-39 256.9 27.4 257 8-264 12-270 (405)
20 PRK07811 cystathionine gamma-s 100.0 1.2E-34 2.5E-39 254.6 28.5 257 8-264 12-271 (388)
21 PRK07810 O-succinylhomoserine 100.0 7.3E-35 1.6E-39 256.7 26.8 257 8-264 15-280 (403)
22 PRK07269 cystathionine gamma-s 100.0 1.3E-34 2.8E-39 251.9 27.9 256 7-264 5-261 (364)
23 PRK08574 cystathionine gamma-s 100.0 1.3E-34 2.9E-39 253.8 27.5 252 11-264 5-262 (385)
24 PRK08249 cystathionine gamma-s 100.0 1.3E-34 2.7E-39 254.8 26.9 257 7-264 7-273 (398)
25 PRK07503 methionine gamma-lyas 100.0 2.2E-34 4.9E-39 253.9 26.9 256 8-264 9-276 (403)
26 PRK06702 O-acetylhomoserine am 100.0 1.1E-34 2.4E-39 255.5 24.7 258 7-264 5-303 (432)
27 TIGR01328 met_gam_lyase methio 100.0 2.8E-34 6E-39 252.3 26.8 256 9-264 4-270 (391)
28 PRK07504 O-succinylhomoserine 100.0 5E-34 1.1E-38 251.3 27.9 261 4-264 6-275 (398)
29 PRK08134 O-acetylhomoserine am 100.0 5E-34 1.1E-38 252.8 27.2 264 1-264 1-306 (433)
30 cd00614 CGS_like CGS_like: Cys 100.0 3.4E-34 7.4E-39 250.6 25.7 241 24-264 1-250 (369)
31 PRK06234 methionine gamma-lyas 100.0 5.6E-34 1.2E-38 251.3 26.8 259 5-264 5-277 (400)
32 KOG0053 Cystathionine beta-lya 100.0 3E-34 6.4E-39 244.1 22.9 256 9-264 22-287 (409)
33 PRK05939 hypothetical protein; 100.0 9.6E-34 2.1E-38 248.9 25.9 240 24-264 8-277 (397)
34 PRK08133 O-succinylhomoserine 100.0 1.1E-33 2.3E-38 248.7 25.4 256 8-264 6-270 (390)
35 PRK07812 O-acetylhomoserine am 100.0 1.6E-33 3.5E-38 249.4 26.5 258 7-264 12-310 (436)
36 PRK06084 O-acetylhomoserine am 100.0 1.7E-33 3.6E-38 249.3 26.5 254 11-264 5-301 (425)
37 PRK05994 O-acetylhomoserine am 100.0 3.8E-33 8.3E-38 247.5 26.7 257 8-264 7-305 (427)
38 PRK07582 cystathionine gamma-l 100.0 5.4E-33 1.2E-37 242.4 26.9 253 8-264 3-257 (366)
39 PRK07049 methionine gamma-lyas 100.0 7.8E-33 1.7E-37 245.3 27.0 259 5-264 14-304 (427)
40 PRK06460 hypothetical protein; 100.0 1E-32 2.3E-37 241.3 26.8 251 9-264 3-254 (376)
41 PRK05613 O-acetylhomoserine am 100.0 1E-32 2.2E-37 244.3 25.7 261 4-264 9-315 (437)
42 TIGR01325 O_suc_HS_sulf O-succ 100.0 2.4E-32 5.3E-37 239.6 27.1 251 13-264 4-263 (380)
43 PLN02242 methionine gamma-lyas 100.0 1E-32 2.2E-37 243.8 24.1 255 8-264 17-290 (418)
44 TIGR01326 OAH_OAS_sulfhy OAH/O 100.0 6.3E-32 1.4E-36 239.5 25.5 254 10-264 3-298 (418)
45 COG2873 MET17 O-acetylhomoseri 100.0 2.9E-32 6.2E-37 226.3 20.7 260 5-264 4-304 (426)
46 PRK05968 hypothetical protein; 100.0 1.3E-31 2.8E-36 235.5 26.1 251 13-264 13-272 (389)
47 PRK06434 cystathionine gamma-l 100.0 9.4E-31 2E-35 228.2 25.7 253 8-264 8-271 (384)
48 COG0436 Aspartate/tyrosine/aro 100.0 4E-29 8.7E-34 219.1 21.2 228 11-248 28-283 (393)
49 KOG0257 Kynurenine aminotransf 100.0 2.5E-29 5.4E-34 212.0 15.8 203 23-232 40-275 (420)
50 COG0156 BioF 7-keto-8-aminopel 99.9 4.5E-27 9.8E-32 202.9 16.4 241 10-261 38-303 (388)
51 PRK06207 aspartate aminotransf 99.9 6.6E-26 1.4E-30 200.8 21.5 187 46-238 71-287 (405)
52 PRK07681 aspartate aminotransf 99.9 1.5E-25 3.3E-30 198.3 21.6 196 46-247 63-284 (399)
53 PRK05942 aspartate aminotransf 99.9 1.4E-25 3.1E-30 198.1 20.6 208 12-229 36-270 (394)
54 PRK07324 transaminase; Validat 99.9 8.3E-26 1.8E-30 198.1 18.6 196 45-247 54-267 (373)
55 PRK06290 aspartate aminotransf 99.9 1.6E-25 3.6E-30 198.3 20.5 217 9-235 42-284 (410)
56 PLN00175 aminotransferase fami 99.9 2.2E-25 4.8E-30 197.8 20.6 196 46-247 84-304 (413)
57 TIGR03540 DapC_direct LL-diami 99.9 4.6E-25 9.9E-30 194.3 21.6 191 46-242 60-277 (383)
58 PLN02187 rooty/superroot1 99.9 5.9E-25 1.3E-29 197.3 22.6 202 8-217 63-292 (462)
59 cd06454 KBL_like KBL_like; thi 99.9 1.3E-25 2.8E-30 195.2 17.1 200 12-220 2-218 (349)
60 TIGR01822 2am3keto_CoA 2-amino 99.9 1.6E-25 3.6E-30 197.7 17.8 201 9-220 36-257 (393)
61 PLN02483 serine palmitoyltrans 99.9 1.8E-25 4E-30 201.5 17.9 203 8-220 97-327 (489)
62 PRK05957 aspartate aminotransf 99.9 1.2E-24 2.7E-29 191.8 22.4 195 47-247 59-278 (389)
63 PRK08068 transaminase; Reviewe 99.9 9.5E-25 2.1E-29 192.6 21.1 208 11-228 32-266 (389)
64 PRK12414 putative aminotransfe 99.9 4.8E-25 1E-29 194.1 19.1 196 46-247 59-280 (384)
65 PRK07366 succinyldiaminopimela 99.9 7.7E-25 1.7E-29 193.1 20.4 178 46-229 61-266 (388)
66 PRK06348 aspartate aminotransf 99.9 1.4E-24 3E-29 191.3 21.3 191 45-241 58-273 (384)
67 PRK09147 succinyldiaminopimela 99.9 1.5E-24 3.3E-29 191.8 21.1 221 10-242 28-285 (396)
68 PRK09276 LL-diaminopimelate am 99.9 1.9E-24 4.2E-29 190.4 21.3 191 46-242 62-279 (385)
69 PRK07179 hypothetical protein; 99.9 6E-25 1.3E-29 194.9 18.0 203 8-219 51-266 (407)
70 PRK08912 hypothetical protein; 99.9 1.7E-24 3.6E-29 191.0 20.2 178 46-229 56-259 (387)
71 COG1167 ARO8 Transcriptional r 99.9 6.7E-25 1.4E-29 196.4 17.6 187 46-239 125-335 (459)
72 TIGR03537 DapC succinyldiamino 99.9 3.9E-24 8.4E-29 186.2 21.9 185 46-236 29-240 (350)
73 PLN03227 serine palmitoyltrans 99.9 6.8E-25 1.5E-29 193.2 17.3 197 14-220 1-226 (392)
74 PRK06108 aspartate aminotransf 99.9 2.7E-24 5.9E-29 189.2 20.9 190 46-241 54-271 (382)
75 PRK08960 hypothetical protein; 99.9 4.5E-24 9.7E-29 188.2 22.3 191 46-242 62-274 (387)
76 PLN02368 alanine transaminase 99.9 3.8E-24 8.3E-29 188.8 21.2 197 45-247 99-339 (407)
77 PRK08636 aspartate aminotransf 99.9 5.9E-24 1.3E-28 188.4 21.7 203 11-222 33-269 (403)
78 PLN00145 tyrosine/nicotianamin 99.9 6.4E-24 1.4E-28 189.3 21.9 166 46-216 87-277 (430)
79 PRK09082 methionine aminotrans 99.9 1.9E-24 4.2E-29 190.4 17.6 190 46-241 60-275 (386)
80 PRK07682 hypothetical protein; 99.9 3.9E-24 8.4E-29 188.0 19.3 196 46-247 50-271 (378)
81 PRK09148 aminotransferase; Val 99.9 7.3E-24 1.6E-28 187.8 21.1 191 46-242 61-278 (405)
82 PLN00143 tyrosine/nicotianamin 99.9 8.6E-24 1.9E-28 187.5 21.4 201 9-216 30-257 (409)
83 TIGR03538 DapC_gpp succinyldia 99.9 6.4E-24 1.4E-28 187.6 20.5 221 10-242 27-284 (393)
84 PRK07550 hypothetical protein; 99.9 1E-23 2.2E-28 185.8 21.5 197 46-248 60-282 (386)
85 PRK13355 bifunctional HTH-doma 99.9 4.4E-24 9.5E-29 194.6 19.4 197 11-216 146-368 (517)
86 PLN02955 8-amino-7-oxononanoat 99.9 5.1E-24 1.1E-28 188.0 18.9 245 10-262 101-381 (476)
87 COG0520 csdA Selenocysteine ly 99.9 4.4E-24 9.5E-29 187.3 18.3 166 56-223 67-245 (405)
88 PRK08361 aspartate aminotransf 99.9 7.6E-24 1.7E-28 187.0 19.7 191 46-242 63-277 (391)
89 PRK07777 aminotransferase; Val 99.9 1.5E-23 3.3E-28 184.8 21.2 170 46-220 54-251 (387)
90 PRK15481 transcriptional regul 99.9 5.4E-24 1.2E-28 190.2 18.2 194 47-247 115-326 (431)
91 PRK06855 aminotransferase; Val 99.9 2.8E-23 6.2E-28 185.4 22.7 168 45-216 65-258 (433)
92 COG1168 MalY Bifunctional PLP- 99.9 9.3E-24 2E-28 176.8 18.2 214 13-237 27-269 (388)
93 PRK07683 aminotransferase A; V 99.9 1.7E-23 3.7E-28 184.4 21.0 173 46-223 58-255 (387)
94 PLN02450 1-aminocyclopropane-1 99.9 1.9E-23 4.1E-28 187.8 21.4 195 47-248 80-317 (468)
95 PRK07590 L,L-diaminopimelate a 99.9 1.3E-23 2.8E-28 186.5 19.8 172 45-221 68-269 (409)
96 PRK06939 2-amino-3-ketobutyrat 99.9 7.5E-24 1.6E-28 187.2 18.1 201 9-220 40-261 (397)
97 PRK05764 aspartate aminotransf 99.9 3.2E-23 6.9E-28 183.2 21.8 226 11-247 31-283 (393)
98 TIGR00474 selA seryl-tRNA(sec) 99.9 1.2E-23 2.6E-28 186.8 19.0 206 55-264 122-364 (454)
99 PTZ00433 tyrosine aminotransfe 99.9 3.1E-23 6.8E-28 184.2 21.6 200 9-215 31-263 (412)
100 PRK07309 aromatic amino acid a 99.9 3.8E-23 8.3E-28 182.5 21.9 196 47-248 61-283 (391)
101 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 6.6E-24 1.4E-28 187.0 16.5 207 8-222 15-240 (387)
102 PRK08175 aminotransferase; Val 99.9 2.2E-23 4.8E-28 184.2 19.8 216 11-236 29-271 (395)
103 PRK07337 aminotransferase; Val 99.9 2.7E-23 5.9E-28 183.3 20.2 191 46-242 60-272 (388)
104 PLN02656 tyrosine transaminase 99.9 4.6E-23 1E-27 182.9 21.4 200 9-216 29-256 (409)
105 PRK06107 aspartate aminotransf 99.9 3.3E-23 7.2E-28 183.5 20.3 196 46-247 63-286 (402)
106 PRK13392 5-aminolevulinate syn 99.9 8.4E-24 1.8E-28 187.8 16.5 201 11-220 46-264 (410)
107 TIGR00858 bioF 8-amino-7-oxono 99.9 1.8E-23 4E-28 182.2 18.4 203 9-220 14-233 (360)
108 PRK07865 N-succinyldiaminopime 99.9 4.1E-23 8.8E-28 180.7 20.3 220 11-248 27-269 (364)
109 TIGR01821 5aminolev_synth 5-am 99.9 1E-23 2.2E-28 186.8 16.6 228 11-248 45-292 (402)
110 PF00155 Aminotran_1_2: Aminot 99.9 4.2E-24 9.1E-29 186.7 13.8 215 12-233 2-252 (363)
111 PLN02376 1-aminocyclopropane-1 99.9 1.1E-22 2.3E-27 183.8 22.6 194 47-247 88-323 (496)
112 TIGR01825 gly_Cac_T_rel pyrido 99.9 2.4E-23 5.2E-28 183.4 18.0 202 10-220 32-249 (385)
113 PRK09064 5-aminolevulinate syn 99.9 2.3E-23 5E-28 184.8 18.0 200 11-220 46-264 (407)
114 PTZ00377 alanine aminotransfer 99.9 4.1E-23 8.9E-28 186.7 19.5 194 46-244 108-344 (481)
115 PRK05664 threonine-phosphate d 99.9 2.7E-23 5.9E-28 179.4 17.4 176 58-247 52-235 (330)
116 TIGR01264 tyr_amTase_E tyrosin 99.9 5.6E-23 1.2E-27 182.0 19.7 200 10-217 30-256 (401)
117 PRK05839 hypothetical protein; 99.9 4.9E-23 1.1E-27 180.7 18.9 205 10-228 23-258 (374)
118 PRK08363 alanine aminotransfer 99.9 1E-22 2.2E-27 180.2 20.3 165 46-215 63-251 (398)
119 PTZ00376 aspartate aminotransf 99.9 5.9E-23 1.3E-27 182.0 18.6 165 45-214 64-264 (404)
120 TIGR03539 DapC_actino succinyl 99.9 1.3E-22 2.8E-27 177.1 20.3 221 10-248 20-263 (357)
121 PRK13393 5-aminolevulinate syn 99.9 4.6E-23 9.9E-28 182.8 17.5 226 11-247 45-291 (406)
122 PLN02822 serine palmitoyltrans 99.9 3.3E-23 7.2E-28 186.6 16.4 200 10-221 108-333 (481)
123 PRK03317 histidinol-phosphate 99.9 1.9E-23 4E-28 183.1 14.1 195 46-248 59-272 (368)
124 PRK07568 aspartate aminotransf 99.9 3.2E-22 6.9E-27 177.0 21.4 173 46-224 59-258 (397)
125 PRK03158 histidinol-phosphate 99.9 2E-23 4.3E-28 182.3 13.2 184 57-248 66-266 (359)
126 PLN02607 1-aminocyclopropane-1 99.9 3.1E-22 6.8E-27 178.8 21.1 172 49-224 91-302 (447)
127 PLN03026 histidinol-phosphate 99.9 2.9E-23 6.2E-28 182.5 13.9 182 57-247 88-283 (380)
128 TIGR03542 DAPAT_plant LL-diami 99.9 2E-22 4.4E-27 178.5 19.1 169 46-220 68-265 (402)
129 PRK14807 histidinol-phosphate 99.9 5.3E-23 1.2E-27 179.1 15.1 183 57-247 61-256 (351)
130 KOG0259 Tyrosine aminotransfer 99.9 8.3E-23 1.8E-27 170.3 15.4 201 12-218 62-288 (447)
131 PRK09265 aminotransferase AlaT 99.9 3E-22 6.6E-27 177.5 20.1 166 46-216 65-255 (404)
132 TIGR01265 tyr_nico_aTase tyros 99.9 5.6E-22 1.2E-26 175.7 21.7 166 47-217 67-257 (403)
133 PRK00950 histidinol-phosphate 99.9 2.7E-23 5.8E-28 181.6 13.2 221 11-248 34-267 (361)
134 PRK02731 histidinol-phosphate 99.9 4.2E-23 9E-28 180.8 14.3 221 11-248 32-269 (367)
135 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 1.5E-22 3.3E-27 176.9 17.6 163 53-221 42-220 (361)
136 PRK01533 histidinol-phosphate 99.9 5.4E-23 1.2E-27 179.8 14.6 190 48-249 60-267 (366)
137 PLN02231 alanine transaminase 99.9 2.5E-22 5.3E-27 182.6 19.2 179 46-228 161-381 (534)
138 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 1.6E-22 3.4E-27 177.3 17.2 160 55-220 51-226 (370)
139 PRK06225 aspartate aminotransf 99.9 4.3E-22 9.3E-27 175.2 20.0 204 11-226 28-249 (380)
140 TIGR01140 L_thr_O3P_dcar L-thr 99.9 8.5E-23 1.8E-27 176.3 15.1 180 57-248 49-238 (330)
141 PRK08153 histidinol-phosphate 99.9 1.8E-22 3.9E-27 176.9 17.3 191 47-248 62-267 (369)
142 COG0079 HisC Histidinol-phosph 99.9 9E-23 1.9E-27 176.4 15.1 220 12-248 23-256 (356)
143 TIGR01141 hisC histidinol-phos 99.9 4.2E-23 9E-28 179.4 13.1 221 11-248 19-254 (346)
144 TIGR03392 FeS_syn_CsdA cystein 99.9 8.8E-23 1.9E-27 180.6 15.3 162 56-220 61-236 (398)
145 PRK09257 aromatic amino acid a 99.9 3.7E-22 8.1E-27 176.5 19.3 165 46-215 62-260 (396)
146 PRK06836 aspartate aminotransf 99.9 5.7E-22 1.2E-26 175.2 20.4 169 46-219 66-262 (394)
147 PRK05958 8-amino-7-oxononanoat 99.9 3.1E-22 6.7E-27 176.2 18.6 202 9-219 37-254 (385)
148 PRK09105 putative aminotransfe 99.9 1.7E-22 3.8E-27 176.9 16.7 159 57-221 80-253 (370)
149 PRK05387 histidinol-phosphate 99.9 1.5E-22 3.2E-27 176.4 15.6 189 47-248 55-257 (353)
150 PRK03321 putative aminotransfe 99.9 1.3E-22 2.9E-27 176.7 14.9 184 56-247 58-259 (352)
151 PRK14809 histidinol-phosphate 99.9 4.2E-22 9.1E-27 173.8 17.8 218 11-247 30-265 (357)
152 PRK10874 cysteine sulfinate de 99.9 4E-22 8.7E-27 176.6 17.8 162 56-220 64-239 (401)
153 PRK08056 threonine-phosphate d 99.9 3.8E-22 8.3E-27 174.0 17.3 160 57-222 57-233 (356)
154 TIGR03576 pyridox_MJ0158 pyrid 99.9 5.3E-22 1.2E-26 171.8 17.8 209 19-249 26-249 (346)
155 PLN02397 aspartate transaminas 99.9 9.2E-22 2E-26 175.1 19.5 164 46-214 84-282 (423)
156 PRK06959 putative threonine-ph 99.9 4.5E-22 9.7E-27 172.3 16.4 209 11-248 24-242 (339)
157 PRK05166 histidinol-phosphate 99.9 6.1E-22 1.3E-26 173.7 17.1 200 12-226 37-256 (371)
158 PRK04870 histidinol-phosphate 99.9 1.8E-22 4E-27 176.1 13.6 167 46-221 57-237 (356)
159 TIGR01977 am_tr_V_EF2568 cyste 99.9 8.6E-22 1.9E-26 173.0 17.9 163 55-219 44-216 (376)
160 PRK02610 histidinol-phosphate 99.9 3E-22 6.5E-27 175.8 14.5 169 47-220 61-253 (374)
161 PRK04311 selenocysteine syntha 99.9 7.4E-22 1.6E-26 175.8 17.0 205 55-264 127-369 (464)
162 PRK09295 bifunctional cysteine 99.9 1.1E-21 2.3E-26 174.1 17.6 162 56-220 68-243 (406)
163 PRK05937 8-amino-7-oxononanoat 99.9 6.2E-22 1.4E-26 173.5 15.7 197 10-214 3-223 (370)
164 PRK09275 aspartate aminotransf 99.9 8.9E-22 1.9E-26 177.1 17.0 168 48-218 129-328 (527)
165 TIGR02379 ECA_wecE TDP-4-keto- 99.9 4.4E-21 9.4E-26 168.0 20.8 197 55-260 31-260 (376)
166 PRK06358 threonine-phosphate d 99.9 1.2E-21 2.5E-26 170.8 17.0 189 47-247 49-257 (354)
167 cd06502 TA_like Low-specificit 99.9 7E-22 1.5E-26 171.0 15.5 221 15-249 1-243 (338)
168 PRK08354 putative aminotransfe 99.9 2.7E-21 5.8E-26 165.7 18.8 150 57-215 42-196 (311)
169 PRK09440 avtA valine--pyruvate 99.9 2.5E-21 5.5E-26 172.3 19.2 196 47-247 68-293 (416)
170 PRK07392 threonine-phosphate d 99.9 1.2E-21 2.6E-26 171.1 16.8 219 12-249 23-261 (360)
171 PRK03967 histidinol-phosphate 99.9 3.5E-22 7.7E-27 172.9 13.3 187 47-247 50-247 (337)
172 TIGR01979 sufS cysteine desulf 99.9 9.6E-22 2.1E-26 174.3 15.4 162 56-220 63-238 (403)
173 TIGR03588 PseC UDP-4-keto-6-de 99.9 5.5E-21 1.2E-25 168.2 19.7 199 55-263 29-270 (380)
174 TIGR01976 am_tr_V_VC1184 cyste 99.9 1.1E-21 2.4E-26 173.5 15.4 161 56-220 61-234 (397)
175 PRK01688 histidinol-phosphate 99.9 3.9E-22 8.4E-27 173.6 12.1 159 56-220 58-232 (351)
176 PRK06425 histidinol-phosphate 99.9 1.1E-21 2.3E-26 169.6 14.4 158 54-220 39-212 (332)
177 PRK14808 histidinol-phosphate 99.9 7.6E-22 1.6E-26 170.7 13.4 198 9-220 17-221 (335)
178 cd06453 SufS_like Cysteine des 99.9 1E-21 2.2E-26 172.4 14.3 162 56-220 44-218 (373)
179 PRK11658 UDP-4-amino-4-deoxy-L 99.9 7.2E-21 1.6E-25 167.1 19.6 198 54-261 32-264 (379)
180 PLN02409 serine--glyoxylate am 99.9 1.9E-21 4.1E-26 172.1 15.9 163 55-221 42-220 (401)
181 PLN02855 Bifunctional selenocy 99.9 4.2E-21 9.1E-26 171.2 17.8 162 56-220 77-252 (424)
182 PRK02948 cysteine desulfurase; 99.9 1.7E-21 3.8E-26 171.4 15.0 160 56-219 44-216 (381)
183 TIGR01437 selA_rel uncharacter 99.9 2.7E-21 5.8E-26 168.8 15.9 199 11-221 8-227 (363)
184 KOG1549 Cysteine desulfurase N 99.9 1.6E-21 3.4E-26 166.9 13.9 194 20-217 49-257 (428)
185 PRK04781 histidinol-phosphate 99.9 2.8E-21 6.2E-26 169.0 15.7 159 57-220 61-239 (364)
186 PRK04635 histidinol-phosphate 99.9 8.7E-22 1.9E-26 171.6 12.1 164 47-220 55-233 (354)
187 TIGR03801 asp_4_decarbox aspar 99.9 1E-20 2.2E-25 170.2 18.8 168 48-218 123-327 (521)
188 cd00609 AAT_like Aspartate ami 99.9 2E-20 4.4E-25 162.1 20.3 192 46-242 29-245 (350)
189 PLN02672 methionine S-methyltr 99.9 6.2E-21 1.3E-25 181.8 17.5 204 10-226 696-935 (1082)
190 PF01041 DegT_DnrJ_EryC1: DegT 99.9 5.8E-21 1.3E-25 166.9 16.1 200 54-263 24-252 (363)
191 cd06451 AGAT_like Alanine-glyo 99.9 9.4E-21 2E-25 165.2 16.1 163 55-221 32-205 (356)
192 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.9 5.8E-20 1.2E-24 161.3 20.7 196 55-260 31-259 (375)
193 COG0399 WecE Predicted pyridox 99.9 4.3E-20 9.4E-25 158.6 19.1 197 55-261 34-258 (374)
194 PLN02651 cysteine desulfurase 99.9 2.2E-20 4.7E-25 163.5 17.6 161 56-220 44-217 (364)
195 PRK08637 hypothetical protein; 99.9 4.6E-20 1E-24 162.7 19.6 169 44-216 35-242 (388)
196 PRK14012 cysteine desulfurase; 99.9 2.7E-20 5.8E-25 165.1 17.4 160 56-219 50-222 (404)
197 TIGR03235 DNA_S_dndA cysteine 99.9 3.1E-20 6.7E-25 161.9 17.2 160 56-219 43-216 (353)
198 PF00266 Aminotran_5: Aminotra 99.9 8.3E-21 1.8E-25 166.5 13.6 165 55-222 43-220 (371)
199 cd00615 Orn_deC_like Ornithine 99.9 1.1E-20 2.3E-25 160.7 13.9 157 55-218 59-236 (294)
200 cd00616 AHBA_syn 3-amino-5-hyd 99.9 1.1E-19 2.3E-24 158.2 20.3 164 54-227 17-192 (352)
201 TIGR03402 FeS_nifS cysteine de 99.9 1.6E-20 3.4E-25 165.2 15.2 160 56-219 43-214 (379)
202 cd00613 GDC-P Glycine cleavage 99.8 8.5E-20 1.8E-24 161.5 19.4 166 53-220 61-243 (398)
203 TIGR02006 IscS cysteine desulf 99.8 5E-20 1.1E-24 163.3 17.5 160 56-219 48-220 (402)
204 PRK07908 hypothetical protein; 99.8 1.7E-20 3.7E-25 163.3 13.5 160 47-221 52-224 (349)
205 TIGR03403 nifS_epsilon cystein 99.8 2.5E-20 5.4E-25 164.1 14.8 162 53-218 40-217 (382)
206 PLN02721 threonine aldolase 99.8 5.5E-20 1.2E-24 160.1 16.7 170 55-229 40-233 (353)
207 TIGR02326 transamin_PhnW 2-ami 99.8 4.9E-20 1.1E-24 161.2 16.2 162 56-221 36-210 (363)
208 PRK15407 lipopolysaccharide bi 99.8 1.7E-19 3.7E-24 160.7 19.8 199 55-263 63-320 (438)
209 PRK13238 tnaA tryptophanase/L- 99.8 9.6E-20 2.1E-24 163.0 17.6 173 45-227 70-284 (460)
210 cd01494 AAT_I Aspartate aminot 99.8 1.5E-19 3.2E-24 140.6 16.5 154 57-216 2-170 (170)
211 PRK13034 serine hydroxymethylt 99.8 2.4E-19 5.2E-24 159.1 18.7 200 12-223 29-251 (416)
212 PRK13479 2-aminoethylphosphona 99.8 1.9E-19 4.2E-24 157.7 17.2 161 56-220 38-211 (368)
213 COG1104 NifS Cysteine sulfinat 99.8 8E-20 1.7E-24 155.8 12.8 161 55-219 44-219 (386)
214 PRK00011 glyA serine hydroxyme 99.8 5.7E-19 1.2E-23 157.2 18.8 160 61-226 77-251 (416)
215 cd00378 SHMT Serine-glycine hy 99.8 8.4E-19 1.8E-23 155.4 19.7 159 60-224 70-245 (402)
216 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 4.3E-19 9.4E-24 154.5 16.5 164 55-222 31-207 (355)
217 PRK07505 hypothetical protein; 99.8 7.2E-19 1.6E-23 155.9 17.8 210 9-225 44-272 (402)
218 KOG1359 Glycine C-acetyltransf 99.8 3.8E-20 8.1E-25 149.8 7.6 200 11-220 67-280 (417)
219 PRK00854 rocD ornithine--oxo-a 99.8 2E-18 4.3E-23 153.0 18.1 233 9-249 39-303 (401)
220 KOG1360 5-aminolevulinate synt 99.8 1.8E-19 3.8E-24 151.3 10.5 218 11-239 171-409 (570)
221 KOG0256 1-aminocyclopropane-1- 99.8 6.9E-18 1.5E-22 142.3 19.6 180 47-230 115-332 (471)
222 KOG1357 Serine palmitoyltransf 99.8 1.6E-19 3.6E-24 153.6 8.7 236 6-250 131-394 (519)
223 TIGR01814 kynureninase kynuren 99.8 1.1E-18 2.3E-23 154.9 14.1 157 57-217 73-248 (406)
224 TIGR00707 argD acetylornithine 99.8 3.3E-18 7.1E-23 150.4 16.4 203 9-219 25-256 (379)
225 PRK10534 L-threonine aldolase; 99.8 3E-18 6.4E-23 148.2 15.6 202 13-231 1-224 (333)
226 PRK01278 argD acetylornithine 99.8 3.7E-18 7.9E-23 150.7 15.8 229 9-247 29-288 (389)
227 cd06450 DOPA_deC_like DOPA dec 99.8 3.2E-19 6.9E-24 154.9 8.8 164 47-216 28-230 (345)
228 PRK03244 argD acetylornithine 99.8 3.2E-18 7E-23 151.5 15.2 230 9-247 41-296 (398)
229 COG0075 Serine-pyruvate aminot 99.8 6.4E-18 1.4E-22 145.1 16.3 162 55-220 38-211 (383)
230 PRK04366 glycine dehydrogenase 99.8 6.6E-18 1.4E-22 152.5 16.8 163 53-220 110-294 (481)
231 cd00617 Tnase_like Tryptophana 99.8 9E-18 2E-22 148.6 16.8 170 46-225 46-257 (431)
232 cd00610 OAT_like Acetyl ornith 99.8 4.6E-18 1E-22 151.1 14.1 203 9-220 34-278 (413)
233 PRK04073 rocD ornithine--oxo-a 99.8 2.8E-17 6.1E-22 145.4 17.2 231 9-248 38-301 (396)
234 PRK02627 acetylornithine amino 99.8 1.1E-17 2.5E-22 147.9 14.0 231 9-248 37-296 (396)
235 PRK00451 glycine dehydrogenase 99.8 2.3E-17 4.9E-22 148.3 15.3 160 57-221 114-288 (447)
236 TIGR03531 selenium_SpcS O-phos 99.8 1.1E-16 2.3E-21 141.6 18.8 165 56-226 106-297 (444)
237 PRK02936 argD acetylornithine 99.7 5.2E-17 1.1E-21 142.8 15.8 229 9-248 27-281 (377)
238 TIGR03812 tyr_de_CO2_Arch tyro 99.7 6.8E-17 1.5E-21 141.8 16.0 159 55-218 59-242 (373)
239 PRK05093 argD bifunctional N-s 99.7 8.3E-17 1.8E-21 142.7 16.6 227 8-245 37-295 (403)
240 PLN02414 glycine dehydrogenase 99.7 5.8E-17 1.3E-21 154.5 15.8 171 46-220 554-752 (993)
241 PRK13520 L-tyrosine decarboxyl 99.7 8.8E-17 1.9E-21 140.9 15.6 159 56-220 60-238 (371)
242 TIGR03246 arg_catab_astC succi 99.7 1.4E-16 3E-21 141.0 16.6 203 9-219 33-265 (397)
243 PF01276 OKR_DC_1: Orn/Lys/Arg 99.7 1.3E-17 2.8E-22 145.3 9.8 158 55-219 66-257 (417)
244 PRK02769 histidine decarboxyla 99.7 2.2E-16 4.7E-21 138.2 15.5 160 56-221 66-250 (380)
245 COG2008 GLY1 Threonine aldolas 99.7 2.6E-16 5.7E-21 131.8 15.2 210 45-260 27-258 (342)
246 KOG0634 Aromatic amino acid am 99.7 4E-16 8.7E-21 132.6 15.0 174 46-225 93-318 (472)
247 PTZ00125 ornithine aminotransf 99.7 3.5E-16 7.7E-21 138.6 15.5 205 9-220 29-266 (400)
248 PRK13580 serine hydroxymethylt 99.7 1.9E-15 4.1E-20 134.2 16.0 156 60-220 100-303 (493)
249 PTZ00094 serine hydroxymethylt 99.7 2.6E-15 5.7E-20 134.8 16.4 153 60-218 85-260 (452)
250 PF01212 Beta_elim_lyase: Beta 99.7 9.2E-17 2E-21 135.3 6.0 176 48-229 24-221 (290)
251 PRK12381 bifunctional succinyl 99.7 3E-15 6.5E-20 132.8 15.2 228 8-245 36-294 (406)
252 PLN02724 Molybdenum cofactor s 99.7 2.7E-15 5.9E-20 143.1 15.9 162 56-220 79-280 (805)
253 PLN03032 serine decarboxylase; 99.7 3.4E-15 7.4E-20 129.9 15.0 160 55-220 66-252 (374)
254 TIGR02618 tyr_phenol_ly tyrosi 99.6 9.7E-15 2.1E-19 127.9 17.6 171 53-231 69-281 (450)
255 KOG1368 Threonine aldolase [Am 99.6 2.3E-15 5E-20 122.4 12.4 209 45-260 48-283 (384)
256 PRK15029 arginine decarboxylas 99.6 2.1E-15 4.7E-20 140.3 13.9 156 56-218 206-402 (755)
257 PLN03226 serine hydroxymethylt 99.6 2.5E-14 5.5E-19 128.5 18.3 160 53-218 74-261 (475)
258 TIGR01788 Glu-decarb-GAD gluta 99.6 8.1E-15 1.8E-19 130.1 14.3 158 55-218 80-277 (431)
259 PRK03080 phosphoserine aminotr 99.6 3.5E-15 7.5E-20 131.2 11.1 153 56-222 49-214 (378)
260 PLN02624 ornithine-delta-amino 99.6 2.1E-14 4.6E-19 129.5 16.1 204 9-219 73-311 (474)
261 COG1103 Archaea-specific pyrid 99.6 5.2E-14 1.1E-18 113.3 16.4 160 55-220 61-236 (382)
262 PRK03715 argD acetylornithine 99.6 1.7E-14 3.6E-19 127.4 15.0 203 9-219 34-265 (395)
263 TIGR00461 gcvP glycine dehydro 99.6 1.1E-14 2.3E-19 137.7 14.5 156 56-218 531-712 (939)
264 TIGR01885 Orn_aminotrans ornit 99.6 2.7E-14 5.9E-19 126.6 15.6 202 9-220 35-274 (401)
265 TIGR00713 hemL glutamate-1-sem 99.6 2.4E-14 5.3E-19 127.8 14.9 227 9-247 46-310 (423)
266 PLN02271 serine hydroxymethylt 99.6 7.1E-14 1.5E-18 124.9 17.7 150 62-217 201-375 (586)
267 COG4992 ArgD Ornithine/acetylo 99.6 1.8E-14 3.9E-19 123.2 12.5 232 8-248 39-298 (404)
268 PRK05367 glycine dehydrogenase 99.6 3E-14 6.4E-19 136.6 14.9 189 19-220 82-289 (954)
269 PRK13237 tyrosine phenol-lyase 99.6 1.9E-13 4.1E-18 120.2 17.4 168 53-228 76-285 (460)
270 PRK04260 acetylornithine amino 99.6 9.7E-14 2.1E-18 122.0 14.9 143 73-219 87-251 (375)
271 PRK05367 glycine dehydrogenase 99.5 1.4E-13 3.1E-18 132.0 15.7 158 56-218 543-724 (954)
272 COG3844 Kynureninase [Amino ac 99.5 1.4E-13 3E-18 113.5 13.5 207 9-217 28-245 (407)
273 PRK13578 ornithine decarboxyla 99.5 4.8E-14 1E-18 130.3 11.4 157 56-219 175-372 (720)
274 COG0112 GlyA Glycine/serine hy 99.5 5.1E-13 1.1E-17 113.1 16.4 162 56-224 72-250 (413)
275 PLN00144 acetylornithine trans 99.5 3.2E-13 7E-18 118.8 15.4 227 8-244 12-277 (382)
276 PRK12566 glycine dehydrogenase 99.5 1.5E-13 3.3E-18 129.4 13.8 158 47-208 530-712 (954)
277 PRK00062 glutamate-1-semialdeh 99.5 2.4E-13 5.1E-18 121.4 14.4 229 9-248 48-313 (426)
278 COG0001 HemL Glutamate-1-semia 99.5 2.8E-13 6.1E-18 117.1 13.5 202 10-221 52-287 (432)
279 PF06838 Met_gamma_lyase: Meth 99.5 1.2E-12 2.6E-17 110.2 16.7 172 56-227 55-249 (403)
280 TIGR03799 NOD_PanD_pyr putativ 99.5 1.3E-13 2.9E-18 124.9 11.9 160 55-220 129-351 (522)
281 COG3977 Alanine-alpha-ketoisov 99.5 8.1E-13 1.8E-17 107.9 14.8 179 46-229 67-275 (417)
282 KOG1358 Serine palmitoyltransf 99.5 4.2E-14 9.1E-19 119.0 7.6 200 8-217 91-317 (467)
283 COG0403 GcvP Glycine cleavage 99.5 4.5E-13 9.8E-18 114.3 13.7 202 12-222 75-296 (450)
284 PRK04612 argD acetylornithine 99.5 7.8E-13 1.7E-17 117.2 15.4 233 8-248 37-301 (408)
285 PF03841 SelA: L-seryl-tRNA se 99.5 4.3E-14 9.2E-19 119.9 6.7 162 57-222 49-232 (367)
286 KOG2862 Alanine-glyoxylate ami 99.5 8.7E-13 1.9E-17 108.1 13.8 161 56-221 51-224 (385)
287 PRK04013 argD acetylornithine/ 99.5 1.1E-12 2.4E-17 114.3 15.2 229 9-250 22-273 (364)
288 PLN02414 glycine dehydrogenase 99.5 5.1E-13 1.1E-17 127.8 14.2 194 13-220 104-317 (993)
289 TIGR01366 serC_3 phosphoserine 99.5 2.4E-13 5.2E-18 118.7 10.9 158 55-220 41-203 (361)
290 PRK08088 4-aminobutyrate amino 99.5 1.1E-12 2.3E-17 117.2 14.7 233 9-248 39-313 (425)
291 PRK08117 4-aminobutyrate amino 99.5 8.2E-13 1.8E-17 118.2 13.6 232 9-248 41-321 (433)
292 PRK08360 4-aminobutyrate amino 99.5 2.8E-12 6.1E-17 114.7 16.9 232 9-248 39-318 (443)
293 PF00464 SHMT: Serine hydroxym 99.5 5.5E-12 1.2E-16 109.8 17.3 150 60-216 71-245 (399)
294 KOG0633 Histidinol phosphate a 99.4 7.9E-13 1.7E-17 106.0 10.1 143 72-219 87-245 (375)
295 PRK11522 putrescine--2-oxoglut 99.4 4.6E-12 9.9E-17 113.7 15.7 204 9-220 80-319 (459)
296 cd00611 PSAT_like Phosphoserin 99.4 1.1E-12 2.4E-17 114.4 10.8 152 56-221 45-211 (355)
297 TIGR03372 putres_am_tran putre 99.4 8.6E-12 1.9E-16 111.3 16.6 231 8-248 72-341 (442)
298 PLN02263 serine decarboxylase 99.4 5.7E-12 1.2E-16 111.8 15.3 159 56-220 134-319 (470)
299 PRK15400 lysine decarboxylase 99.4 8.2E-13 1.8E-17 122.1 10.2 154 56-218 196-383 (714)
300 TIGR01364 serC_1 phosphoserine 99.4 2.5E-12 5.4E-17 111.7 11.8 152 56-221 38-203 (349)
301 COG1921 SelA Selenocysteine sy 99.4 5.3E-12 1.2E-16 108.0 13.3 156 56-220 69-240 (395)
302 PRK15399 lysine decarboxylase 99.4 5.2E-12 1.1E-16 116.8 13.6 153 56-218 196-383 (713)
303 PRK09792 4-aminobutyrate trans 99.4 1.2E-11 2.6E-16 110.2 15.3 205 9-220 38-285 (421)
304 COG1003 GcvP Glycine cleavage 99.4 4.4E-12 9.6E-17 108.4 11.7 160 53-217 106-287 (496)
305 PLN02880 tyrosine decarboxylas 99.4 2.7E-12 5.8E-17 116.0 11.0 159 55-219 122-324 (490)
306 PLN02760 4-aminobutyrate:pyruv 99.4 1.4E-11 3.1E-16 111.7 15.7 233 9-249 87-383 (504)
307 COG1982 LdcC Arginine/lysine/o 99.4 3E-12 6.5E-17 114.2 10.9 154 57-217 72-247 (557)
308 PRK08593 4-aminobutyrate amino 99.4 2.8E-11 6E-16 108.5 17.2 232 9-248 40-321 (445)
309 PRK07046 aminotransferase; Val 99.4 2.6E-11 5.5E-16 108.8 16.8 201 10-220 74-303 (453)
310 PRK05964 adenosylmethionine--8 99.4 2.7E-11 6E-16 108.1 16.8 205 9-219 40-287 (423)
311 COG0076 GadB Glutamate decarbo 99.4 6.5E-12 1.4E-16 112.1 12.7 158 56-219 102-293 (460)
312 PRK06541 hypothetical protein; 99.4 2.1E-11 4.5E-16 109.6 15.9 232 9-248 50-340 (460)
313 TIGR00700 GABAtrnsam 4-aminobu 99.4 1E-11 2.3E-16 110.7 13.8 229 9-245 31-308 (420)
314 PRK13360 omega amino acid--pyr 99.4 2.1E-11 4.5E-16 109.2 15.7 205 9-219 44-302 (442)
315 TIGR02407 ectoine_ectB diamino 99.4 2.7E-11 5.9E-16 107.7 16.3 204 8-218 32-280 (412)
316 PRK06777 4-aminobutyrate amino 99.4 2.1E-11 4.5E-16 108.7 15.3 232 9-248 38-312 (421)
317 PRK05355 3-phosphoserine/phosp 99.4 6.2E-12 1.4E-16 109.7 10.9 155 55-222 48-215 (360)
318 KOG0258 Alanine aminotransfera 99.3 5E-12 1.1E-16 106.6 8.8 165 48-216 108-312 (475)
319 PLN02590 probable tyrosine dec 99.3 1.4E-11 3E-16 111.9 12.2 158 56-219 171-372 (539)
320 PLN02482 glutamate-1-semialdeh 99.3 4.8E-11 1E-15 107.3 15.6 200 9-219 97-331 (474)
321 PRK12403 putative aminotransfe 99.3 7.8E-11 1.7E-15 106.0 16.6 235 9-249 52-342 (460)
322 PRK09264 diaminobutyrate--2-ox 99.3 5E-11 1.1E-15 106.4 14.8 203 9-218 37-284 (425)
323 COG0160 GabT 4-aminobutyrate a 99.3 4.6E-11 1E-15 105.1 14.0 232 8-248 53-335 (447)
324 PRK06918 4-aminobutyrate amino 99.3 5.8E-11 1.3E-15 106.8 14.8 226 9-242 52-327 (451)
325 PRK12389 glutamate-1-semialdeh 99.3 9.8E-11 2.1E-15 104.6 16.1 229 9-248 51-316 (428)
326 PF00202 Aminotran_3: Aminotra 99.3 1.6E-11 3.4E-16 106.4 10.6 232 8-248 13-291 (339)
327 PRK09221 beta alanine--pyruvat 99.3 8.2E-11 1.8E-15 105.4 15.4 204 9-219 47-305 (445)
328 PRK07495 4-aminobutyrate amino 99.3 6.6E-11 1.4E-15 105.5 14.4 228 9-242 38-306 (425)
329 PRK06105 aminotransferase; Pro 99.3 1.1E-10 2.5E-15 105.0 16.0 233 9-249 46-341 (460)
330 PRK06082 4-aminobutyrate amino 99.3 9.5E-11 2.1E-15 105.4 15.2 231 9-248 70-343 (459)
331 TIGR00461 gcvP glycine dehydro 99.3 7.5E-11 1.6E-15 112.0 15.0 190 19-221 70-278 (939)
332 TIGR01365 serC_2 phosphoserine 99.3 3.4E-11 7.3E-16 105.0 11.5 154 55-222 39-205 (374)
333 TIGR00709 dat 2,4-diaminobutyr 99.3 1.7E-10 3.7E-15 103.5 15.7 230 9-248 37-319 (442)
334 PRK06149 hypothetical protein; 99.3 1.6E-10 3.5E-15 112.6 16.6 231 9-249 583-861 (972)
335 PRK05769 4-aminobutyrate amino 99.3 2.8E-10 6E-15 102.0 16.9 204 9-220 52-308 (441)
336 PF00282 Pyridoxal_deC: Pyrido 99.3 8.4E-11 1.8E-15 102.9 13.3 159 57-221 81-281 (373)
337 PRK06058 4-aminobutyrate amino 99.3 2.8E-10 6.1E-15 102.1 16.9 232 9-248 54-333 (443)
338 PF04864 Alliinase_C: Allinase 99.3 2.7E-11 5.8E-16 101.4 9.2 183 55-248 43-241 (363)
339 PRK00615 glutamate-1-semialdeh 99.3 2.7E-10 5.7E-15 101.7 16.1 228 9-248 51-317 (433)
340 PRK07678 aminotransferase; Val 99.2 6.6E-10 1.4E-14 99.8 17.2 233 9-249 45-335 (451)
341 PRK06062 hypothetical protein; 99.2 6.2E-10 1.3E-14 100.0 16.4 232 9-249 51-332 (451)
342 PRK05630 adenosylmethionine--8 99.2 4.6E-10 1E-14 100.0 14.3 232 9-248 38-322 (422)
343 PRK05639 4-aminobutyrate amino 99.2 1E-09 2.2E-14 98.7 16.1 231 9-248 51-335 (457)
344 PRK07986 adenosylmethionine--8 99.2 5.2E-10 1.1E-14 99.7 13.5 232 10-249 42-326 (428)
345 PF02347 GDC-P: Glycine cleava 99.2 5.7E-10 1.2E-14 97.8 13.0 164 53-222 107-282 (429)
346 PRK07480 putative aminotransfe 99.1 1E-09 2.2E-14 98.7 14.5 232 9-249 48-339 (456)
347 PRK12566 glycine dehydrogenase 99.1 3E-10 6.5E-15 107.5 11.0 195 13-222 80-293 (954)
348 PRK05965 hypothetical protein; 99.1 3E-09 6.5E-14 95.8 16.7 231 9-248 44-337 (459)
349 TIGR02617 tnaA_trp_ase tryptop 99.1 3.8E-10 8.3E-15 98.6 10.4 164 53-219 72-282 (467)
350 PRK06943 adenosylmethionine--8 99.1 2.6E-09 5.7E-14 96.0 15.9 205 9-220 52-310 (453)
351 PRK07482 hypothetical protein; 99.1 2.1E-09 4.6E-14 96.8 15.3 205 9-219 48-307 (461)
352 PRK06173 adenosylmethionine--8 99.1 2.1E-09 4.5E-14 96.0 14.9 232 9-249 42-328 (429)
353 PRK06938 diaminobutyrate--2-ox 99.1 3.1E-09 6.7E-14 95.7 15.7 231 9-248 61-344 (464)
354 PRK07481 hypothetical protein; 99.1 4.7E-09 1E-13 94.3 16.7 205 9-219 40-300 (449)
355 PRK07030 adenosylmethionine--8 99.1 5.4E-09 1.2E-13 94.2 16.8 203 10-220 46-303 (466)
356 PRK06148 hypothetical protein; 99.1 2.3E-09 5.1E-14 104.7 15.0 230 9-248 622-900 (1013)
357 PRK07036 hypothetical protein; 99.1 1.2E-08 2.6E-13 92.0 17.5 206 9-220 49-309 (466)
358 PRK06916 adenosylmethionine--8 99.1 4.2E-09 9.1E-14 94.9 14.5 205 9-220 54-312 (460)
359 COG4100 Cystathionine beta-lya 99.1 3.4E-09 7.5E-14 86.9 12.5 165 57-221 67-254 (416)
360 PRK06209 glutamate-1-semialdeh 99.1 1.3E-09 2.7E-14 97.6 11.0 200 9-219 46-268 (431)
361 COG1448 TyrB Aspartate/tyrosin 99.1 6E-09 1.3E-13 88.4 14.1 194 11-213 26-258 (396)
362 PRK06917 hypothetical protein; 99.1 9.9E-09 2.1E-13 92.2 16.5 231 9-248 29-319 (447)
363 TIGR00508 bioA adenosylmethion 99.0 9.6E-09 2.1E-13 91.8 15.4 202 10-218 44-294 (427)
364 PF12897 Aminotran_MocR: Alani 99.0 1E-08 2.2E-13 87.4 14.2 186 56-248 70-299 (425)
365 TIGR03811 tyr_de_CO2_Ent tyros 99.0 4.3E-09 9.2E-14 96.8 13.0 122 95-222 224-403 (608)
366 PRK08742 adenosylmethionine--8 99.0 1.2E-08 2.6E-13 92.0 15.7 204 9-219 62-324 (472)
367 PRK06931 diaminobutyrate--2-ox 99.0 2.6E-08 5.6E-13 89.7 16.6 231 9-248 56-338 (459)
368 PRK07483 hypothetical protein; 99.0 2.1E-08 4.5E-13 90.0 15.3 204 9-219 28-287 (443)
369 KOG1402 Ornithine aminotransfe 98.9 1.6E-08 3.4E-13 84.1 12.3 189 56-248 102-322 (427)
370 PLN02452 phosphoserine transam 98.9 1.4E-08 2.9E-13 88.7 11.4 152 55-221 52-218 (365)
371 KOG1401 Acetylornithine aminot 98.9 2.4E-08 5.2E-13 85.3 12.4 205 8-220 53-293 (433)
372 PRK08297 L-lysine aminotransfe 98.8 1.5E-07 3.2E-12 84.5 15.7 191 9-202 43-296 (443)
373 PRK12462 phosphoserine aminotr 98.8 6.4E-08 1.4E-12 84.0 12.4 151 56-221 50-216 (364)
374 TIGR03251 LAT_fam L-lysine 6-t 98.8 1.1E-07 2.4E-12 85.1 13.9 191 9-202 36-289 (431)
375 TIGR00699 GABAtrns_euk 4-amino 98.8 5.9E-08 1.3E-12 87.1 12.2 189 9-203 56-325 (464)
376 KOG1404 Alanine-glyoxylate ami 98.7 9.1E-08 2E-12 81.3 10.2 232 8-248 47-327 (442)
377 COG0161 BioA Adenosylmethionin 98.7 2E-07 4.3E-12 82.0 11.7 232 10-249 43-336 (449)
378 KOG2040 Glycine dehydrogenase 98.6 5.7E-08 1.2E-12 87.3 6.3 173 19-200 124-308 (1001)
379 KOG3846 L-kynurenine hydrolase 98.6 8.3E-08 1.8E-12 79.2 6.2 159 59-217 115-293 (465)
380 PLN02974 adenosylmethionine-8- 98.6 6.7E-07 1.5E-11 85.2 13.2 108 138-249 583-707 (817)
381 KOG2040 Glycine dehydrogenase 98.5 1.7E-06 3.8E-11 78.0 11.2 156 46-206 568-749 (1001)
382 PF05889 SLA_LP_auto_ag: Solub 98.3 5.7E-06 1.2E-10 71.4 9.8 151 63-219 64-240 (389)
383 KOG2467 Glycine/serine hydroxy 98.3 2.1E-05 4.6E-10 66.7 12.1 157 53-217 80-266 (477)
384 KOG1412 Aspartate aminotransfe 98.2 3.3E-05 7.2E-10 64.2 11.5 134 73-212 102-264 (410)
385 KOG1383 Glutamate decarboxylas 98.1 2.9E-05 6.2E-10 67.8 9.7 158 57-220 122-307 (491)
386 KOG0629 Glutamate decarboxylas 98.0 6E-05 1.3E-09 65.2 9.9 169 45-219 129-338 (510)
387 KOG1403 Predicted alanine-glyo 98.0 8.9E-06 1.9E-10 67.2 4.5 176 65-248 97-326 (452)
388 COG3033 TnaA Tryptophanase [Am 98.0 4.3E-05 9.3E-10 64.8 8.3 160 55-220 79-285 (471)
389 PLN02994 1-aminocyclopropane-1 98.0 3.1E-05 6.7E-10 59.1 6.9 58 48-105 87-153 (153)
390 KOG1411 Aspartate aminotransfe 97.6 0.00045 9.8E-09 58.4 9.3 131 78-213 128-285 (427)
391 KOG0628 Aromatic-L-amino-acid/ 97.0 0.0012 2.5E-08 58.0 5.1 116 96-218 184-319 (511)
392 COG1932 SerC Phosphoserine ami 97.0 0.0011 2.3E-08 56.7 4.6 154 55-222 50-219 (365)
393 KOG1405 4-aminobutyrate aminot 96.5 0.0093 2E-07 50.9 7.0 63 139-203 271-345 (484)
394 KOG3843 Predicted serine hydro 92.5 0.29 6.3E-06 40.5 5.1 146 58-207 60-232 (432)
395 PF05368 NmrA: NmrA-like famil 89.0 1.2 2.5E-05 36.2 5.8 92 78-174 7-99 (233)
396 PLN00191 enolase 86.2 6.1 0.00013 35.9 9.1 97 78-175 296-394 (457)
397 PLN02672 methionine S-methyltr 85.2 31 0.00067 35.0 14.0 180 43-226 416-625 (1082)
398 PF13460 NAD_binding_10: NADH( 81.5 16 0.00035 28.0 8.8 84 79-171 8-91 (183)
399 KOG2790 Phosphoserine aminotra 80.7 15 0.00033 31.0 8.5 151 55-220 52-222 (370)
400 COG1648 CysG Siroheme synthase 80.2 23 0.00049 28.6 9.3 92 72-177 14-106 (210)
401 TIGR03649 ergot_EASG ergot alk 80.1 9.7 0.00021 31.8 7.6 88 74-170 2-97 (285)
402 TIGR01060 eno phosphopyruvate 80.1 11 0.00024 33.9 8.3 92 81-173 266-361 (425)
403 PTZ00081 enolase; Provisional 79.2 12 0.00027 33.8 8.2 94 81-175 285-382 (439)
404 cd03313 enolase Enolase: Enola 78.5 12 0.00026 33.5 7.9 92 81-173 265-360 (408)
405 COG2870 RfaE ADP-heptose synth 77.1 12 0.00026 33.2 7.1 111 59-175 55-177 (467)
406 TIGR01470 cysG_Nterm siroheme 77.0 32 0.0007 27.5 9.3 93 72-178 11-104 (205)
407 PF02310 B12-binding: B12 bind 76.4 4.4 9.4E-05 29.0 3.9 88 107-196 17-110 (121)
408 KOG2865 NADH:ubiquinone oxidor 76.1 20 0.00044 30.4 7.9 89 81-171 73-170 (391)
409 KOG1465 Translation initiation 75.3 45 0.00097 28.4 9.7 100 72-176 164-271 (353)
410 KOG1371 UDP-glucose 4-epimeras 73.9 7.4 0.00016 33.4 5.0 103 73-175 4-125 (343)
411 PRK00077 eno enolase; Provisio 73.6 22 0.00048 32.0 8.3 90 83-173 267-360 (425)
412 COG1748 LYS9 Saccharopine dehy 73.1 35 0.00076 30.3 9.2 106 72-182 3-129 (389)
413 COG0552 FtsY Signal recognitio 72.1 20 0.00043 31.1 7.1 104 80-183 153-274 (340)
414 PF07085 DRTGG: DRTGG domain; 72.0 19 0.00041 25.2 6.2 49 120-174 42-90 (105)
415 KOG1251 Serine racemase [Signa 71.3 47 0.001 27.6 8.7 101 70-174 73-180 (323)
416 TIGR01305 GMP_reduct_1 guanosi 70.9 61 0.0013 28.2 9.8 124 73-196 97-240 (343)
417 COG1606 ATP-utilizing enzymes 69.9 24 0.00053 29.2 6.9 109 58-179 8-123 (269)
418 COG1184 GCD2 Translation initi 68.3 72 0.0016 27.2 9.7 104 72-181 121-234 (301)
419 KOG2741 Dimeric dihydrodiol de 68.2 13 0.00029 32.1 5.4 72 101-179 59-132 (351)
420 KOG3191 Predicted N6-DNA-methy 68.2 33 0.00072 27.1 7.0 104 48-155 18-126 (209)
421 PRK08335 translation initiatio 68.2 46 0.00099 28.1 8.5 104 66-175 105-217 (275)
422 PRK04296 thymidine kinase; Pro 68.2 24 0.00052 27.7 6.7 94 81-177 18-114 (190)
423 cd00532 MGS-like MGS-like doma 68.1 28 0.00062 24.7 6.5 85 84-176 16-106 (112)
424 cd02067 B12-binding B12 bindin 68.0 29 0.00062 24.8 6.6 86 109-196 18-108 (119)
425 COG2185 Sbm Methylmalonyl-CoA 67.7 15 0.00032 27.6 4.9 74 95-170 14-92 (143)
426 TIGR03573 WbuX N-acetyl sugar 67.6 42 0.0009 29.3 8.5 76 98-179 91-170 (343)
427 CHL00200 trpA tryptophan synth 67.2 30 0.00065 28.9 7.3 89 86-175 112-208 (263)
428 COG0296 GlgB 1,4-alpha-glucan 66.6 6.3 0.00014 37.1 3.4 37 143-179 201-237 (628)
429 PLN02476 O-methyltransferase 66.5 51 0.0011 27.8 8.5 44 139-185 194-237 (278)
430 TIGR01501 MthylAspMutase methy 66.4 17 0.00038 27.0 5.1 67 102-170 13-81 (134)
431 COG1087 GalE UDP-glucose 4-epi 64.6 56 0.0012 28.0 8.2 97 73-173 2-113 (329)
432 PF02603 Hpr_kinase_N: HPr Ser 64.5 13 0.00027 27.3 4.1 40 130-175 72-111 (127)
433 COG0108 RibB 3,4-dihydroxy-2-b 64.4 17 0.00037 28.9 4.9 42 132-174 149-190 (203)
434 PRK05678 succinyl-CoA syntheta 64.0 30 0.00065 29.4 6.7 73 98-177 49-124 (291)
435 smart00642 Aamy Alpha-amylase 63.9 7.1 0.00015 30.1 2.8 28 152-179 66-93 (166)
436 PF03435 Saccharop_dh: Sacchar 63.9 74 0.0016 28.0 9.6 72 74-147 2-75 (386)
437 TIGR00715 precor6x_red precorr 63.7 33 0.00071 28.6 6.8 90 74-173 3-96 (256)
438 PRK05096 guanosine 5'-monophos 63.6 1E+02 0.0022 26.9 10.3 120 73-192 98-237 (346)
439 cd03315 MLE_like Muconate lact 63.6 85 0.0018 26.0 9.7 79 96-176 158-238 (265)
440 PF01073 3Beta_HSD: 3-beta hyd 63.2 78 0.0017 26.6 9.2 89 80-171 8-109 (280)
441 cd02068 radical_SAM_B12_BD B12 63.0 41 0.00089 24.3 6.6 83 112-197 10-97 (127)
442 PF00265 TK: Thymidine kinase; 62.2 24 0.00051 27.5 5.4 91 83-177 19-111 (176)
443 PF01596 Methyltransf_3: O-met 62.0 21 0.00045 28.6 5.2 127 55-186 31-165 (205)
444 cd02072 Glm_B12_BD B12 binding 62.0 26 0.00056 25.8 5.3 69 107-177 16-89 (128)
445 cd03316 MR_like Mandelate race 61.8 1.1E+02 0.0023 26.6 10.2 113 61-176 179-298 (357)
446 KOG4589 Cell division protein 61.5 81 0.0018 25.1 8.0 40 128-167 121-165 (232)
447 PF10678 DUF2492: Protein of u 61.3 14 0.0003 24.6 3.3 50 53-103 17-69 (78)
448 PLN02819 lysine-ketoglutarate 60.8 55 0.0012 33.1 8.8 80 95-179 608-706 (1042)
449 PRK05993 short chain dehydroge 60.6 49 0.0011 27.4 7.5 60 73-137 6-67 (277)
450 TIGR00262 trpA tryptophan synt 60.5 34 0.00075 28.4 6.4 90 86-176 108-205 (256)
451 CHL00194 ycf39 Ycf39; Provisio 59.6 62 0.0013 27.5 8.1 90 74-170 3-102 (317)
452 cd03319 L-Ala-DL-Glu_epimerase 59.6 1.1E+02 0.0024 26.1 10.2 80 94-175 204-285 (316)
453 cd03321 mandelate_racemase Man 58.3 86 0.0019 27.4 8.9 45 128-173 248-292 (355)
454 COG1707 ACT domain-containing 58.3 83 0.0018 24.3 7.4 94 65-178 79-177 (218)
455 PF00113 Enolase_C: Enolase, C 58.2 15 0.00032 31.3 3.9 93 81-175 137-234 (295)
456 PF04989 CmcI: Cephalosporin h 58.1 34 0.00074 27.5 5.7 98 77-177 43-149 (206)
457 TIGR03853 matur_matur probable 58.0 18 0.0004 23.9 3.4 49 53-103 15-67 (77)
458 TIGR02026 BchE magnesium-proto 58.0 43 0.00093 30.8 7.2 83 112-197 30-122 (497)
459 cd01422 MGS Methylglyoxal synt 58.0 59 0.0013 23.3 6.6 57 117-174 44-106 (115)
460 TIGR01019 sucCoAalpha succinyl 57.6 42 0.00092 28.5 6.5 74 97-177 46-122 (286)
461 COG0159 TrpA Tryptophan syntha 57.6 62 0.0013 27.1 7.3 86 87-173 116-209 (265)
462 PRK05234 mgsA methylglyoxal sy 57.3 58 0.0013 24.4 6.6 48 130-177 65-114 (142)
463 PF14258 DUF4350: Domain of un 57.2 48 0.001 21.1 5.8 60 111-175 11-70 (70)
464 PRK02261 methylaspartate mutas 57.0 70 0.0015 23.7 7.0 67 108-176 21-92 (137)
465 COG2984 ABC-type uncharacteriz 57.0 78 0.0017 27.3 7.9 82 94-178 160-248 (322)
466 PRK14106 murD UDP-N-acetylmura 56.9 68 0.0015 28.9 8.3 93 72-177 7-100 (450)
467 TIGR00640 acid_CoA_mut_C methy 56.9 51 0.0011 24.3 6.2 71 102-174 14-89 (132)
468 PRK15418 transcriptional regul 54.7 1.4E+02 0.003 25.7 10.6 115 56-174 69-208 (318)
469 cd03318 MLE Muconate Lactonizi 54.6 1.2E+02 0.0027 26.5 9.3 78 95-174 216-295 (365)
470 cd03325 D-galactonate_dehydrat 54.5 1.4E+02 0.0031 26.0 9.6 47 128-175 238-284 (352)
471 PF06506 PrpR_N: Propionate ca 54.4 29 0.00062 26.9 4.8 21 116-136 98-118 (176)
472 PF00128 Alpha-amylase: Alpha 54.4 11 0.00024 31.5 2.6 28 151-178 47-74 (316)
473 cd01455 vWA_F11C1-5a_type Von 54.0 45 0.00097 26.5 5.7 35 141-175 114-148 (191)
474 PLN02589 caffeoyl-CoA O-methyl 53.8 1.3E+02 0.0028 25.0 9.9 126 55-185 65-199 (247)
475 PRK04148 hypothetical protein; 53.6 84 0.0018 23.4 6.8 102 58-175 2-108 (134)
476 PF02254 TrkA_N: TrkA-N domain 53.6 31 0.00067 24.2 4.5 84 74-167 2-85 (116)
477 COG1066 Sms Predicted ATP-depe 53.4 1.7E+02 0.0037 26.4 9.6 87 85-174 113-215 (456)
478 PF00926 DHBP_synthase: 3,4-di 53.3 36 0.00079 27.0 5.1 36 138-174 151-186 (194)
479 PF13872 AAA_34: P-loop contai 52.1 11 0.00023 32.2 2.1 27 156-182 159-186 (303)
480 PRK02705 murD UDP-N-acetylmura 52.0 1.3E+02 0.0028 27.2 9.3 96 73-175 3-98 (459)
481 COG0148 Eno Enolase [Carbohydr 51.8 1.2E+02 0.0027 26.9 8.4 92 83-175 266-361 (423)
482 TIGR00789 flhB_rel flhB C-term 51.5 15 0.00032 24.8 2.3 22 158-179 29-50 (82)
483 TIGR02104 pulA_typeI pullulana 51.3 13 0.00028 35.2 2.7 32 148-179 221-252 (605)
484 PLN02591 tryptophan synthase 51.3 94 0.002 25.8 7.5 88 86-174 99-194 (250)
485 PRK06179 short chain dehydroge 51.3 68 0.0015 26.3 6.9 59 72-137 5-65 (270)
486 PLN02274 inosine-5'-monophosph 51.2 90 0.0019 28.9 8.0 98 81-178 248-360 (505)
487 PRK06182 short chain dehydroge 50.9 83 0.0018 25.9 7.4 71 73-148 5-83 (273)
488 PTZ00314 inosine-5'-monophosph 50.7 1.2E+02 0.0026 28.0 8.8 100 80-179 240-354 (495)
489 TIGR00649 MG423 conserved hypo 50.6 1.5E+02 0.0033 26.6 9.3 75 91-170 317-401 (422)
490 PF00106 adh_short: short chai 50.3 41 0.00088 25.1 5.0 93 73-166 2-109 (167)
491 PRK06138 short chain dehydroge 50.1 1.3E+02 0.0029 24.1 8.8 76 73-148 7-90 (252)
492 cd00308 enolase_like Enolase-s 50.0 1.4E+02 0.0029 24.1 10.1 48 128-176 156-203 (229)
493 PF00117 GATase: Glutamine ami 49.8 68 0.0015 24.9 6.3 70 102-173 5-76 (192)
494 PLN02253 xanthoxin dehydrogena 49.8 44 0.00096 27.6 5.6 66 72-137 19-86 (280)
495 TIGR00511 ribulose_e2b2 ribose 49.5 1.7E+02 0.0036 25.1 9.8 101 72-178 117-227 (301)
496 PRK13125 trpA tryptophan synth 49.2 68 0.0015 26.3 6.5 90 86-176 94-192 (244)
497 TIGR00715 precor6x_red precorr 49.1 1.6E+02 0.0034 24.6 9.2 39 129-167 213-253 (256)
498 cd03329 MR_like_4 Mandelate ra 48.9 1.7E+02 0.0037 25.6 9.3 112 61-174 179-297 (368)
499 COG1091 RfbD dTDP-4-dehydrorha 48.9 1.2E+02 0.0026 25.7 7.8 51 124-174 34-97 (281)
500 PRK13566 anthranilate synthase 48.7 67 0.0015 31.2 7.0 76 92-172 525-601 (720)
No 1
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=1.3e-38 Score=278.27 Aligned_cols=261 Identities=38% Similarity=0.601 Sum_probs=230.2
Q ss_pred CCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHH
Q 024619 4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82 (265)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~a 82 (265)
|++.+.++..++.+.. .+..+...||++++.++..+.......|.|+|.|+|..+.+++.++++.|.+.++++++|++|
T Consensus 1 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~A 80 (388)
T PRK08861 1 MSTRKPATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA 80 (388)
T ss_pred CCCCCcccceeECCCCCCCCCCCccCCcccCcceEeCCcCccCCccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHH
Confidence 4455667778887732 334688999999999987666544456889999999999999999999999989999999999
Q ss_pred HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHH
Q 024619 83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI 161 (265)
Q Consensus 83 l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i 161 (265)
+. +++.++++||+|+++.|.|++....+....+..|+++..++..|++++++++.+++++|++++|+||||.+.|+++|
T Consensus 81 i~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I 160 (388)
T PRK08861 81 LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAEL 160 (388)
T ss_pred HHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHH
Confidence 96 67778999999999999998776666555667789999999889999999998899999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619 162 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241 (265)
Q Consensus 162 ~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265)
.++|+++|+++++|++|+.+....+.+.+.|+++.|++||++|+.++++|+++.+++.+.+.....+...+..++|.++|
T Consensus 161 ~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~ 240 (388)
T PRK08861 161 CQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSY 240 (388)
T ss_pred HHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHH
Confidence 99999999999999999998887888889999999999999999989999998877777777777788889999999999
Q ss_pred HHHhccCchHhhHHHHhhchhcc
Q 024619 242 ICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+++++|+++..|++++.+|+.++
T Consensus 241 l~~rgl~Tl~lR~~~~~~~a~~~ 263 (388)
T PRK08861 241 MTLRGIRTLGARMRVHEESAQQI 263 (388)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 2
>PLN02509 cystathionine beta-lyase
Probab=100.00 E-value=2.8e-37 Score=274.19 Aligned_cols=259 Identities=84% Similarity=1.270 Sum_probs=229.7
Q ss_pred CCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619 6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA 85 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~ 85 (265)
++..++..++.+...+..+...+|++++.++..+.......+.|++.|+|.+++++++++++.|.+.++++++|++++.+
T Consensus 84 ~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~ 163 (464)
T PLN02509 84 EASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA 163 (464)
T ss_pred CCCcchHheeCCCCCCCCCCccCCccccceecCccccccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHH
Confidence 56666778888743355789999999999987666555567889999999999999999999999999999999988876
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+..++++||+|+++++.|+++...+...+...|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++|
T Consensus 164 il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lA 243 (464)
T PLN02509 164 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMA 243 (464)
T ss_pred HHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHH
Confidence 66789999999999999999876666666788999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++|+++++|++|+.+....+...+.|++++|++||++|++++.+|+++.+++.+.+..+..+...+..+++..+|++++
T Consensus 244 k~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr 323 (464)
T PLN02509 244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLR 323 (464)
T ss_pred HHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHh
Confidence 99999999999999888887888899999999999999988888999998777776666677777778899999999999
Q ss_pred ccCchHhhHHHHhhchhcc
Q 024619 246 GVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~l 264 (265)
+|+++..|++++++|+..+
T Consensus 324 ~L~tL~~R~~r~~~nA~~l 342 (464)
T PLN02509 324 GIKTMALRIEKQQENARKI 342 (464)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 3
>PRK08114 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=4.5e-37 Score=267.75 Aligned_cols=260 Identities=23% Similarity=0.376 Sum_probs=227.5
Q ss_pred CCCCCcceeEeeccCCCC-CCCCCCCCeeeccccccCCCC--------C-CCCCccCCCCChhHHHHHHHHHhHhCCCce
Q 024619 4 EEEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRA 73 (265)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~ 73 (265)
|.+.+.++..++.+...+ ..|...||++++.++..+... . ...|.|+|.|+|.++.+++.++++.|.+.+
T Consensus 1 ~~~~~~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a 80 (395)
T PRK08114 1 MTDKKLDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGC 80 (395)
T ss_pred CCCCCcchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeE
Confidence 345566677888773233 348999999999987554321 1 134889999999999999999999999999
Q ss_pred EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619 74 LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 152 (265)
Q Consensus 74 i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~ 152 (265)
++++||++|+. +++.++++||+|++++..|.+....+...++..|+++.+++..|.+++++++++++++|++++|+||+
T Consensus 81 ~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~ 160 (395)
T PRK08114 81 ALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSIT 160 (395)
T ss_pred EEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCC
Confidence 99999999996 67888999999999999999998887777788999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHcC--CEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619 153 QQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 230 (265)
Q Consensus 153 G~~~~l~~i~~~a~~~~--~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~ 230 (265)
|.+.|+++|+++||++| +++++|.+++.+...++.+.|+|+++.|.+||++|++.+.+|+++.+++ ..+.+......
T Consensus 161 ~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~~~l~~~~~~ 239 (395)
T PRK08114 161 MEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANAR-CWEQLRENSYL 239 (395)
T ss_pred CEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHH-HHHHHHHHHHh
Confidence 99999999999999984 9999999999999999999999999999999999999999998876554 44555566677
Q ss_pred ccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 231 EGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.|..++|..+|+++++|+++..|++++.+|+..+
T Consensus 240 ~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~v 273 (395)
T PRK08114 240 MGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKV 273 (395)
T ss_pred ccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999865
No 4
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-37 Score=262.57 Aligned_cols=259 Identities=47% Similarity=0.774 Sum_probs=237.5
Q ss_pred CCCcceeEeeccCCC-CCCCCCCCCeeeccccccCCCCC--------CCCCccCCCCChhHHHHHHHHHhHhCCCceEEe
Q 024619 6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF 76 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~ 76 (265)
....++.+++.+... +..|...+|++++.++..+.... ...+.|+|.|+|.++.+++.++.+.|.+..+.+
T Consensus 5 ~~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af 84 (396)
T COG0626 5 KLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF 84 (396)
T ss_pred ccccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence 456778999998534 57999999999999987665432 467999999999999999999999999999999
Q ss_pred cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccc
Q 024619 77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQ 154 (265)
Q Consensus 77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~ 154 (265)
+||++|+. +++.++++||+|++.+..|.+..+.+....++.|+++.+++..+.+++++++. +++++|+++.|.||+..
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~ 164 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE 164 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence 99999996 68999999999999999999999999999999999999999988888888887 59999999999999999
Q ss_pred cccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH-hccC
Q 024619 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS 233 (265)
Q Consensus 155 ~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~-~~~~ 233 (265)
+.|+++|+++|+++|+++++|++++.+.+..|++.|+||++.|.+|+++|+..+++|+++.+++.+.+.+...+. ..+.
T Consensus 165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~ 244 (396)
T COG0626 165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA 244 (396)
T ss_pred cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999888888888887766666 5899
Q ss_pred CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.++|.++|+++|+||++..|++++.+|++.+
T Consensus 245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~I 275 (396)
T COG0626 245 VLSPFDAWLLLRGLRTLALRMERHNENALKI 275 (396)
T ss_pred CCCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
No 5
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=100.00 E-value=1.7e-36 Score=265.40 Aligned_cols=254 Identities=72% Similarity=1.102 Sum_probs=222.6
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhc
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL 90 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~ 90 (265)
+..++-+...++.|...||++++.++..+....+..+.|+|.|+|.++++++.+++++|.++.+++++|++|+.+++.++
T Consensus 3 t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~ll 82 (378)
T TIGR01329 3 TLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITRLL 82 (378)
T ss_pred ceeEeCCCCCCCCCCcCCCeecCcceecCCccccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh
Confidence 34455552234468889999999998766544455788999999999999999999999999999999998887666688
Q ss_pred CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCC
Q 024619 91 GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170 (265)
Q Consensus 91 ~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~ 170 (265)
++||+|+++++.|+++...+...++..|+++++++..|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+
T Consensus 83 ~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~ 162 (378)
T TIGR01329 83 NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNA 162 (378)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCC
Confidence 99999999999999988777667788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCch
Q 024619 171 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 250 (265)
Q Consensus 171 ~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (265)
++++|++|+.+....+...+.|++++|++|+++|++++++|+++.+++.+.+.....+...+..+++..+++++++++++
T Consensus 163 ~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl 242 (378)
T TIGR01329 163 LVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL 242 (378)
T ss_pred EEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH
Confidence 99999999888777777889999999999999998888899999887777666666666678889999999999999999
Q ss_pred HhhHHHHhhchhcc
Q 024619 251 ALRVEKQQVCFFDL 264 (265)
Q Consensus 251 ~~~~~~~~~~~~~l 264 (265)
..|++++..|+..+
T Consensus 243 ~~R~e~~~~na~~l 256 (378)
T TIGR01329 243 AIRIEKQQENARAI 256 (378)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 6
>PRK09028 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=1.7e-36 Score=264.85 Aligned_cols=255 Identities=26% Similarity=0.464 Sum_probs=219.9
Q ss_pred cceeEeeccCCCC-CCCCCCCCeeeccccccCCCC--------C-CCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619 9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78 (265)
Q Consensus 9 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--------~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~ 78 (265)
.++..++.+...+ ..|...+|++++.++..+... . ...+.|+|.++|...++++.++++.+.+++++++|
T Consensus 5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~s 84 (394)
T PRK09028 5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPS 84 (394)
T ss_pred ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence 3466777762233 348899999999998654421 1 13477999999999999999999999888999999
Q ss_pred hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619 79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD 157 (265)
Q Consensus 79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~ 157 (265)
|++|+. ++.+++++||+|++.+|.|+++...+...++..|+++..++..+.+.+++++.+++++|++++|+||+|.+.|
T Consensus 85 G~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d 164 (394)
T PRK09028 85 GAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD 164 (394)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH
Confidence 999986 7788899999999999999888876656667899999999887888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCCh
Q 024619 158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 237 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 237 (265)
+++|+++|+++|+++++|++|+.+....|.+.|+|+++.|++||++|++++++|+++.++ ...+.+...+...+..++|
T Consensus 165 l~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~-~~~~~l~~~~~~~G~~~~p 243 (394)
T PRK09028 165 VPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANE-KHWDQLREHSYLMGQCTSP 243 (394)
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCH-HHHHHHHHHHHhcCCCCCH
Confidence 999999999999999999999998888899999999999999999999999999876544 4445455566677899999
Q ss_pred hHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 238 FDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.++|+++++|+++..|++++.+|+..+
T Consensus 244 ~~a~l~~rgl~TL~lR~~~~~~na~~l 270 (394)
T PRK09028 244 DDVYLAMRGLRTLGVRLAQHEKNALKV 270 (394)
T ss_pred HHHHHHHcccCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 7
>PRK05967 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=2.2e-36 Score=263.67 Aligned_cols=255 Identities=30% Similarity=0.467 Sum_probs=224.0
Q ss_pred cceeEeeccC-CCCCCCCCCCCeeeccccccCCCC----CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619 9 VSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al 83 (265)
.++..++.+. ..++.|...+|++++.++..+... ....|.|+|.|+|.++.+++.++.+.+.+..+++++|++|+
T Consensus 13 ~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi 92 (395)
T PRK05967 13 INTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAAV 92 (395)
T ss_pred cccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhcccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHHH
Confidence 3466777762 234578999999999998655432 23468899999999999999999999888899999999998
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~ 162 (265)
. +++.++++||+|+++++.|+++...+...++..|+++..++..+.+.+++++++++++|++++|+||++.+.|+++|+
T Consensus 93 ~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~ 172 (395)
T PRK05967 93 TVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIA 172 (395)
T ss_pred HHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHH
Confidence 6 778899999999999999999987776778899999999998888899999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 163 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 163 ~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
++|+++|+++++|++|+.+....|.+.|.|+++.|++|+++|++++++|+++.+++ ..+.+.......+..++|.++|+
T Consensus 173 ~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~~l~~~~~~~G~~~~p~da~l 251 (395)
T PRK05967 173 EAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEK-CWPQLLEAHGTLGLCAGPDDTYQ 251 (395)
T ss_pred HHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHH-HHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999988888999999999999999999999999998876554 44445556667788999999999
Q ss_pred HHhccCchHhhHHHHhhchhcc
Q 024619 243 CLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~l 264 (265)
++++++++..|++++.+|+..+
T Consensus 252 ~~rgl~Tl~lR~~~~~~na~~l 273 (395)
T PRK05967 252 ILRGLRTMGIRLEHHRKSALEI 273 (395)
T ss_pred HHcCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 8
>PRK07671 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=1e-35 Score=260.29 Aligned_cols=255 Identities=44% Similarity=0.734 Sum_probs=224.0
Q ss_pred ceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHH
Q 024619 10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH 88 (265)
Q Consensus 10 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~ 88 (265)
++..++-+.. ....|...||++++.++..+.......+.|++.++|...++++.++++.|.+..+++++|+.++.+++.
T Consensus 4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~ 83 (377)
T PRK07671 4 KTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM 83 (377)
T ss_pred ccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH
Confidence 4556776622 233688999999999987665444456889999999999999999999999999999999988876667
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc
Q 024619 89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH 168 (265)
Q Consensus 89 ~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~ 168 (265)
++++||+|++++|.|++....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|.++|+++
T Consensus 84 ~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~ 163 (377)
T PRK07671 84 LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEK 163 (377)
T ss_pred HhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 89999999999999997766666667889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 169 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 169 ~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|+++++|++|+.+....+...+.|+++.|++|+++|+.+..+|+++.+++.+.+.....+...+..+++..+|+++++++
T Consensus 164 g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~ 243 (377)
T PRK07671 164 GLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK 243 (377)
T ss_pred CCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC
Confidence 99999999998877777778889999999999998888777898888877777878888888889999999999999999
Q ss_pred chHhhHHHHhhchhcc
Q 024619 249 TMALRVEKQQVCFFDL 264 (265)
Q Consensus 249 ~~~~~~~~~~~~~~~l 264 (265)
++..|++++++|+..+
T Consensus 244 tl~~R~~~~~~na~~l 259 (377)
T PRK07671 244 TLGIRMEEHETNSRAI 259 (377)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 9
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=100.00 E-value=7.9e-36 Score=261.04 Aligned_cols=254 Identities=43% Similarity=0.711 Sum_probs=224.7
Q ss_pred eeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHh
Q 024619 11 TLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL 89 (265)
Q Consensus 11 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~ 89 (265)
+..++-+.. .+..|...||++++.++..+.......|.|++.++|..+++++.++++.|.+..++++||+.|+.+++.+
T Consensus 5 t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~~ 84 (380)
T PRK06176 5 TKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSL 84 (380)
T ss_pred ceeeECCCCCCCCCCCccCCcccCCceecCCCCCcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHH
Confidence 445665522 2336889999999999876664444568899999999999999999999999999999999998866778
Q ss_pred cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC
Q 024619 90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169 (265)
Q Consensus 90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~ 169 (265)
+++||+|+++++.|++....+...++..|+++.+++..|++++++++++++++|++++|+||+|.+.|+++|+++|+++|
T Consensus 85 l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~g 164 (380)
T PRK06176 85 FQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHG 164 (380)
T ss_pred cCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcC
Confidence 89999999999999988877777788899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619 170 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 170 ~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
+++|+|++|+.+....+...+.|++++|++|+++|+++..+|+++.+++.+.+.....+...+..+++..+|.+.++++.
T Consensus 165 i~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t 244 (380)
T PRK06176 165 LLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT 244 (380)
T ss_pred CEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc
Confidence 99999999998877777888999999999999988887889999887777777777888888888999999999999999
Q ss_pred hHhhHHHHhhchhcc
Q 024619 250 MALRVEKQQVCFFDL 264 (265)
Q Consensus 250 ~~~~~~~~~~~~~~l 264 (265)
+..|++++++|+..+
T Consensus 245 l~~R~~~~~~~a~~l 259 (380)
T PRK06176 245 LGLRMEAHQKNALCV 259 (380)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 10
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=100.00 E-value=7.5e-36 Score=260.59 Aligned_cols=243 Identities=26% Similarity=0.442 Sum_probs=212.7
Q ss_pred CCCCCCCCCeeeccccccCCC----CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCE
Q 024619 21 DPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEE 95 (265)
Q Consensus 21 ~~~g~~~~~~~~~~~~~~~~~----~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~ 95 (265)
+..|+..||++++.++..+.. .....+.|+|.|+|..+.+++.++++.|.+++++++||++|+. ++.+++++||+
T Consensus 12 ~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~ 91 (377)
T TIGR01324 12 FSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDH 91 (377)
T ss_pred CCCCCccCCeeCCCceeeCChhhhcCCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCE
Confidence 346889999999999865542 1334688999999999999999999999999999999999986 77888999999
Q ss_pred EEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 96 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 96 viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
|+++++.|++....+...++..|+++..++..+.+++++++.+++++|++++|+||+|.+.|+++|+++|+++|+++++|
T Consensus 92 Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD 171 (377)
T TIGR01324 92 VLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMID 171 (377)
T ss_pred EEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999888765545567789999998876668899999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHH
Q 024619 176 NSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 255 (265)
Q Consensus 176 ~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (265)
++|+.|....+.+.+.|+++.|++|+++|++++.+|+++.+++.+ +.+.......+..++|..+|..+++++++..|++
T Consensus 172 ~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~-~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~R~~ 250 (377)
T TIGR01324 172 NTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTW-DQLREHSYLMGQMVDADDAYTTLRGLRTLGVRLK 250 (377)
T ss_pred CCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHH-HHHHHHHHHhCCCCCHHHHHHHHhhhhhHHHHHH
Confidence 999999988888999999999999999999999999998776544 4444456677889999999999999999999999
Q ss_pred HHhhchhcc
Q 024619 256 KQQVCFFDL 264 (265)
Q Consensus 256 ~~~~~~~~l 264 (265)
++++|+.++
T Consensus 251 ~~~~~a~~l 259 (377)
T TIGR01324 251 QHQESSLAI 259 (377)
T ss_pred HHHHHHHHH
Confidence 999997654
No 11
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=100.00 E-value=1.2e-35 Score=260.16 Aligned_cols=257 Identities=39% Similarity=0.610 Sum_probs=221.5
Q ss_pred CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
..++..++.+.. .+..|...||+..+.++..........+.|+|.++|..+++++.++++.|.++++++++|++|+. +
T Consensus 3 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~ 82 (382)
T TIGR02080 3 KQATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLV 82 (382)
T ss_pred CcccceeecCCCCCCCCCCccCCeeCCceeEeCCcCccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence 345666776622 33468999999999987654332234578999999999999999999999888888888899996 6
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+..++++||+|+++.|.|++....+.......++++..++..|++++++++.+++++|++++|+||||.+.|+++|+++|
T Consensus 83 l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la 162 (382)
T TIGR02080 83 TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLA 162 (382)
T ss_pred HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHH
Confidence 77789999999999999998776666666777889999888899999999998999999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++|+++++|++|+.+....+...+.|+++.|++|+++|++++++|+++.++..+.+.....+...+..+++.++|++++
T Consensus 163 ~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr 242 (382)
T TIGR02080 163 KAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242 (382)
T ss_pred HHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence 99999999999999887666777789999999999999999999999988777777777777777788999999999999
Q ss_pred ccCchHhhHHHHhhchhcc
Q 024619 246 GVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~l 264 (265)
+++++..|++++.+|+..+
T Consensus 243 ~l~tl~~R~~~~~~na~~~ 261 (382)
T TIGR02080 243 GLRTLVARMRLQQRNAQAI 261 (382)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 12
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=1.2e-35 Score=260.26 Aligned_cols=257 Identities=36% Similarity=0.561 Sum_probs=222.5
Q ss_pred CcceeEeeccC-CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 8 GVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 8 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
+.++..++-+. ..+..|...||++++.++..........+.|+|.++|.++.+++.++++.|.++++++++|++++. +
T Consensus 4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~ 83 (386)
T PRK08045 4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV 83 (386)
T ss_pred CcccceeEcCCCCCCCCCCccCCccCCcceecCCccccCCceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence 34456677652 234468899999999998765543445688999999999999999999999888888889999986 6
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+..++++||+|++++|.|++....+.......++++..++..|++++++++.+++++|++++|+||||.+.|+++|.++|
T Consensus 84 l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia 163 (386)
T PRK08045 84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA 163 (386)
T ss_pred HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHH
Confidence 67789999999999999997766666666667788888888899999999988999999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++|+++++|++|+.+....+...+.|+++.|++||++|++++++|+++.+++.+.+.+...+...+..+++..+|++++
T Consensus 164 ~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~r 243 (386)
T PRK08045 164 REAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243 (386)
T ss_pred HHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 99999999999999887777888899999999999999999999999988766666766677777788899999999999
Q ss_pred ccCchHhhHHHHhhchhcc
Q 024619 246 GVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~l 264 (265)
+|+++..|++++.+|+..+
T Consensus 244 gl~tl~~R~~~~~~na~~l 262 (386)
T PRK08045 244 GLRTLVPRMELAQRNAQAI 262 (386)
T ss_pred hhccHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 13
>PRK08064 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=1.4e-35 Score=260.70 Aligned_cols=260 Identities=44% Similarity=0.765 Sum_probs=226.8
Q ss_pred CCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619 5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al 83 (265)
++.+.++..++.+.. ....|+.++|++++.++..+.......+.|+|.++|..+++++.+++++|.+..+++++|+.|+
T Consensus 3 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai 82 (390)
T PRK08064 3 MSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALEDIIAELEGGTKGFAFASGMAAI 82 (390)
T ss_pred CCCCcccceeeCCCCCCCCCCCccCCcccCcceecCcccccCCCcccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHH
Confidence 444566777777632 2346899999999999876665555678899999999999999999999999999999999888
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619 84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 84 ~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
.++..++++||+|+++++.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|+++|.+
T Consensus 83 ~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~ 162 (390)
T PRK08064 83 STAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVK 162 (390)
T ss_pred HHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHH
Confidence 74445889999999999999987777767778899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619 164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243 (265)
Q Consensus 164 ~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (265)
+|+++|+++++|++|+.+....+.+.+.|+++.|++|+++|++|+++|+++.+++.+.+.+...+...+..+++..++..
T Consensus 163 la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~ 242 (390)
T PRK08064 163 LAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLV 242 (390)
T ss_pred HHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999998876667778899999999999999998889999888777777777777778888999999999
Q ss_pred HhccCchHhhHHHHhhchhcc
Q 024619 244 LRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~l 264 (265)
++.++++..|++++..|+..+
T Consensus 243 ~~gl~tl~~R~~~~~~~a~~l 263 (390)
T PRK08064 243 LRGLKTLHVRLEHSSETANKI 263 (390)
T ss_pred HcccCcHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 14
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=258.60 Aligned_cols=256 Identities=43% Similarity=0.728 Sum_probs=222.0
Q ss_pred cceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHHH
Q 024619 9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT 87 (265)
Q Consensus 9 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~ 87 (265)
.++..++.+.. .+..|...||++++.++..+.......+.|+|.++|..+++++.+++++|.+..+++++|++|+.++.
T Consensus 5 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~ 84 (366)
T PRK08247 5 IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM 84 (366)
T ss_pred cchhheeCCCCCCCCCCCccCCcccCcccccCCCCCcCCccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH
Confidence 34556776622 23468899999999998765533345688999999999999999999999998999999999997666
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~ 167 (265)
.++++||+|++++|.|++....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.++++|+++|++
T Consensus 85 ~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~ 164 (366)
T PRK08247 85 SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKK 164 (366)
T ss_pred HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 78899999999999999987766677788999999999999999999999899999999999999999999999999999
Q ss_pred cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 168 ~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
+|+++|+|++|+.+....+...+.|+++.|++|+++|++++++|+++.+++.+.+.....+...+..+++..++++.+++
T Consensus 165 ~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l 244 (366)
T PRK08247 165 HGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244 (366)
T ss_pred cCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhcc
Confidence 99999999999888777777778999999999999988888999998876667676777777777888999999999999
Q ss_pred CchHhhHHHHhhchhcc
Q 024619 248 KTMALRVEKQQVCFFDL 264 (265)
Q Consensus 248 ~~~~~~~~~~~~~~~~l 264 (265)
+++..+++++++|+..+
T Consensus 245 ~tl~~r~~~~~~~a~~l 261 (366)
T PRK08247 245 KTLALRMRQHEENAKAI 261 (366)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 99988888888887653
No 15
>PRK07050 cystathionine beta-lyase; Provisional
Probab=100.00 E-value=2.8e-35 Score=258.75 Aligned_cols=258 Identities=24% Similarity=0.405 Sum_probs=225.6
Q ss_pred CCcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619 7 PGVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT 77 (265)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~ 77 (265)
.+.++..++.+. ..+..|...+|++++.++..+... ....+.|++.++|..+++++.+++++|.+.+++++
T Consensus 8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~ 87 (394)
T PRK07050 8 RALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQP 87 (394)
T ss_pred CCccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEec
Confidence 345567787773 234478999999999998655421 23457899999999999999999999999999999
Q ss_pred chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
||++|+. ++.+++++||+|++++|.|+.+...+...++..|+++++++..+.+++++++.+++++|++++|+||+|.+.
T Consensus 88 sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~~~ 167 (394)
T PRK07050 88 SGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTMEVP 167 (394)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCccHh
Confidence 9999986 677889999999999999999887665667888999999998788899999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619 157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 236 (265)
|+++|+++|+++|+++++|++|+.+....+...+.|+++.|++|+++|+.++++|+++..++.+.+.........+..++
T Consensus 168 di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~ 247 (394)
T PRK07050 168 DVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVS 247 (394)
T ss_pred hHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999998878888899999999999999888888999888877777777777777788999
Q ss_pred hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 237 PFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+.+++++++.++++..|++++.+|++.+
T Consensus 248 ~~~a~l~lr~l~tl~~Rl~~~~~~a~~l 275 (394)
T PRK07050 248 ADDCSLVLRGLPSLQVRLAAHDRSALEV 275 (394)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887754
No 16
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=100.00 E-value=3.7e-36 Score=261.54 Aligned_cols=243 Identities=48% Similarity=0.771 Sum_probs=209.2
Q ss_pred CCCCCCCCeeeccccccCC-------CCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCC
Q 024619 22 PYGALSTPLYQTATFKQPS-------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG 93 (265)
Q Consensus 22 ~~g~~~~~~~~~~~~~~~~-------~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g 93 (265)
..+...||++++.++..+. ......+.|+|.|+|.++.+++.++++.|++.+++++||++|+. ++++++++|
T Consensus 15 ~~~~v~~pi~~sstf~~~~~~~~~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~G 94 (386)
T PF01053_consen 15 QTGAVNPPIYQSSTFVFDSAEELDAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPG 94 (386)
T ss_dssp TTTBSS--B---SBBBBSSHHHHHHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TT
T ss_pred CCCCeeCCccccccCcccchHHHHhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccC
Confidence 6899999999999988772 23445699999999999999999999999999999999999995 888999999
Q ss_pred CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC-CEE
Q 024619 94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG-ALL 172 (265)
Q Consensus 94 ~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~-~~l 172 (265)
|+|++....|.+....+...+...|+++.+++..|++++++++++++++|++++|.||+..+.|+++|+++|+++| +++
T Consensus 95 d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~ 174 (386)
T PF01053_consen 95 DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILV 174 (386)
T ss_dssp BEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EE
T ss_pred CceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceE
Confidence 9999999999999998888888899999999999999999999999999999999999999999999999999998 999
Q ss_pred EEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeec-hhHHHHHHHHHHhccCCCChhHHHHHHhccCchH
Q 024619 173 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 251 (265)
Q Consensus 173 i~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (265)
++|.+++.+....|+..|+|+++.|++|+++|+..+++|+++.++ ..+.+.+...+...+..+++.++|+++++++++.
T Consensus 175 vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~ 254 (386)
T PF01053_consen 175 VVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLP 254 (386)
T ss_dssp EEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHH
T ss_pred EeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHH
Confidence 999999999888999999999999999999999999999999887 5677777788889999999999999999999999
Q ss_pred hhHHHHhhchhcc
Q 024619 252 LRVEKQQVCFFDL 264 (265)
Q Consensus 252 ~~~~~~~~~~~~l 264 (265)
.|++++.+|+.++
T Consensus 255 ~R~~~~~~nA~~l 267 (386)
T PF01053_consen 255 LRMERQNENAEAL 267 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 17
>PRK06767 methionine gamma-lyase; Provisional
Probab=100.00 E-value=3.4e-35 Score=258.12 Aligned_cols=261 Identities=36% Similarity=0.606 Sum_probs=223.0
Q ss_pred CCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceE
Q 024619 4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74 (265)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i 74 (265)
|+..+.++..++.+.. .+..|...||++++.++..+... ....+.|+|.++|..+++++.+++++|.++.+
T Consensus 1 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al 80 (386)
T PRK06767 1 MKKKHMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEAL 80 (386)
T ss_pred CCCCCcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEE
Confidence 4556667888888732 34468899999999998665421 22457899999999999999999999999999
Q ss_pred EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcc
Q 024619 75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ 153 (265)
Q Consensus 75 ~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G 153 (265)
++++|++|+. ++..++++||+|+++.+.|+.....+....+..|+++..++..|++++++++.+++++|++++|+||+|
T Consensus 81 ~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG 160 (386)
T PRK06767 81 AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTM 160 (386)
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCc
Confidence 9999998885 667889999999999999988877766666778899988998899999999998999999999999999
Q ss_pred ccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccC
Q 024619 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS 233 (265)
Q Consensus 154 ~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~ 233 (265)
.+.|+++|.++|+++|+++++|++|+.+....+...+.|+++.|++|+++|+++.++|+++++++.+.+.........+.
T Consensus 161 ~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~ 240 (386)
T PRK06767 161 KLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGG 240 (386)
T ss_pred eecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999887777777889999999999998776656799998887776655566666677
Q ss_pred CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.+++..+++.+++|+++..+++++++++..+
T Consensus 241 ~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~l 271 (386)
T PRK06767 241 IMAPFDAWLLLRGLKTLAVRMDRHCDNAEKI 271 (386)
T ss_pred CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998887754
No 18
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=4.6e-35 Score=259.47 Aligned_cols=263 Identities=37% Similarity=0.562 Sum_probs=220.7
Q ss_pred CCCCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCc
Q 024619 2 SVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72 (265)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~ 72 (265)
+-.+..+.++..++.+.. .+..|+..+|++++.++..+... ....+.|+|.++|..+.+++.++++.|.++
T Consensus 2 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~ 81 (431)
T PRK08248 2 SEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIG 81 (431)
T ss_pred cccccCCcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCc
Confidence 344555566778887732 23368889999999998654421 234577999999999999999999999999
Q ss_pred eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCC
Q 024619 73 ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP 151 (265)
Q Consensus 73 ~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np 151 (265)
.+++++|++|+. ++..++++||+|+++++.|++....+...++..|++++.++..|++++++++++++++|++++|+||
T Consensus 82 al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NP 161 (431)
T PRK08248 82 ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNP 161 (431)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCC
Confidence 999999999986 7778899999999999999888777777788899999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH-----------
Q 024619 152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------- 220 (265)
Q Consensus 152 ~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~----------- 220 (265)
||.+.|+++|+++|+++|+++|+|++++.+....+.+.+.|+++.|++|+++|++...+|+++.+.+..
T Consensus 162 tG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~ 241 (431)
T PRK08248 162 KGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLT 241 (431)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCcccccccccccccc
Confidence 999999999999999999999999999877766777889999999999999777666677776544211
Q ss_pred ---------------------HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 221 ---------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 221 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
...........+..++|.++|+++++|+++..|++++++|+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~l 306 (431)
T PRK08248 242 EPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAV 306 (431)
T ss_pred CCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 11222345567899999999999999999999999999999875
No 19
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=6.7e-35 Score=256.88 Aligned_cols=257 Identities=36% Similarity=0.598 Sum_probs=220.6
Q ss_pred CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
..++..++.+.. .+..|...||+..+.++..........+.|++.++|..+++++.++++.|.++.+++++|++++. +
T Consensus 12 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~ 91 (405)
T PRK08776 12 SAATAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLV 91 (405)
T ss_pred CccchheeCCCCCCCCCCCccCCEeccceEEeCCCCcccCCcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHH
Confidence 344567776622 33468889999999987655433334678999999999999999999999999999999999986 6
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+..++++||+|+++.|.|+.....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++|
T Consensus 92 l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la 171 (405)
T PRK08776 92 LNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAA 171 (405)
T ss_pred HHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHH
Confidence 67789999999999999998766666666778999999999999999999988999999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++|+++|+|++|+.+....+...+.|+++.|++|+++|++++++|+++.+++.+.+.+.......+..+++..+++.++
T Consensus 172 ~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~ 251 (405)
T PRK08776 172 HKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLR 251 (405)
T ss_pred HHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 99999999999999877666777889999999999999888888999988777777766666666677789999999999
Q ss_pred ccCchHhhHHHHhhchhcc
Q 024619 246 GVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~l 264 (265)
+++.+..+++.+.+|+..+
T Consensus 252 gl~tl~~r~~~~~~na~~l 270 (405)
T PRK08776 252 GLRTLDARLRVHQENADAI 270 (405)
T ss_pred hhCcHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 20
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=1.2e-34 Score=254.64 Aligned_cols=257 Identities=44% Similarity=0.717 Sum_probs=221.9
Q ss_pred CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCC-CCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619 8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA- 84 (265)
Q Consensus 8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~- 84 (265)
+.++..++.+.. .+..|...+|++++.++....... ...+.|++.++|..+++++.+++++|.+..+++++|++|+.
T Consensus 12 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~ 91 (388)
T PRK07811 12 GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDC 91 (388)
T ss_pred CcccceeeCCCCCCCCCCCccCCccCCcceecCCcccccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHH
Confidence 345667776622 334688999999999987655432 24578999999999999999999999999999999999986
Q ss_pred HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHH
Q 024619 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEM 164 (265)
Q Consensus 85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~ 164 (265)
++..++++||+|+++.|.|++....+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++
T Consensus 92 ~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~l 171 (388)
T PRK07811 92 LLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAEL 171 (388)
T ss_pred HHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHH
Confidence 67788999999999999999877666666777899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619 165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244 (265)
Q Consensus 165 a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (265)
|+++|+++|+|++|+.+....+...+.|++++|++|+++|+++.++|+++.+++.+.+.....+...+..+++..+++.+
T Consensus 172 a~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~ 251 (388)
T PRK07811 172 AHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTL 251 (388)
T ss_pred HHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999988777777788999999999999888888899998887777776766666677888899999999
Q ss_pred hccCchHhhHHHHhhchhcc
Q 024619 245 RGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~l 264 (265)
++|+++..|++++.+|+..+
T Consensus 252 ~~L~tl~~R~~~~~~na~~l 271 (388)
T PRK07811 252 RGLKTLAVRMDRHSENAEAV 271 (388)
T ss_pred hccCcHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 21
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=100.00 E-value=7.3e-35 Score=256.65 Aligned_cols=257 Identities=32% Similarity=0.504 Sum_probs=220.2
Q ss_pred CcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619 8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG 79 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g 79 (265)
+.++..++.+...+..+...+|++++.++...... ....+.|++.++|..+++++.++++.|.++++++++|
T Consensus 15 ~~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG 94 (403)
T PRK07810 15 SQATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATASG 94 (403)
T ss_pred CcchhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEECCh
Confidence 34566777763334567888999999987554421 2235779999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
+.|+. ++..++++||+|+++...|++....+...++..|+++++++..|++++++++.+++++|++++|+||+|.+.|+
T Consensus 95 ~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl 174 (403)
T PRK07810 95 MSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLVDI 174 (403)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeecCH
Confidence 98885 67788999999999998888877666677788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (265)
++|+++|+++|+++++|++|+.+....+...+.|+++.|++|+++|+++..+|+++.+++.+...+.......+..+++.
T Consensus 175 ~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~ 254 (403)
T PRK07810 175 AAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAF 254 (403)
T ss_pred HHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999988887777889999999999999877667789998887766555555556677889999
Q ss_pred HHHHHHhccCchHhhHHHHhhchhcc
Q 024619 239 DCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.++.++++|+++..|++++.+|+.++
T Consensus 255 ~a~l~l~~L~tl~~R~~~~~~~a~~~ 280 (403)
T PRK07810 255 NAWVLLKGLETLALRVRHSNASALRI 280 (403)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 22
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=251.91 Aligned_cols=256 Identities=39% Similarity=0.633 Sum_probs=216.5
Q ss_pred CCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619 7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA 85 (265)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~ 85 (265)
.+.++..++-+.. .+..+...||++++.++..+.......+.|+|.++|..+++++.++++.|.+.++++++|++|+.+
T Consensus 5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~ 84 (364)
T PRK07269 5 LHINTILAQAGIKSDEATGALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIVL 84 (364)
T ss_pred CCcccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHH
Confidence 3455667776622 333688899999999987665444456889999999999999999999999999999999999975
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+..++++||+|+++.+.|......+.......++++... .|++++++++.+++++|++++|+||+|.+.|+++|+++|
T Consensus 85 ~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la 162 (364)
T PRK07269 85 AFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLA 162 (364)
T ss_pred HHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHH
Confidence 556789999999999999988765544444445554443 489999999999999999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++|+++++|++|+.+....+...+.|+++.|++|+++|++++.+|+++.+++.+.+.....+...+..+++.++|++++
T Consensus 163 ~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~ 242 (364)
T PRK07269 163 HAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMR 242 (364)
T ss_pred HHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 99999999999998887777888899999999999999888878999988777777766666666678899999999999
Q ss_pred ccCchHhhHHHHhhchhcc
Q 024619 246 GVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~l 264 (265)
+|+++..|++++++|+..+
T Consensus 243 ~L~tL~~r~~~~~~na~~~ 261 (364)
T PRK07269 243 GLKTLSLRMERSTANAQEV 261 (364)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 23
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=1.3e-34 Score=253.75 Aligned_cols=252 Identities=39% Similarity=0.595 Sum_probs=214.7
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCC----CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
+..++-+...+..+...||++++.++..+.. .....+.|+|.++|..+++++.+++++|.++++++++|++|+. +
T Consensus 5 t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~ 84 (385)
T PRK08574 5 TDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAISTL 84 (385)
T ss_pred ceeeecCCCCCCCCCccCCccCCcceecCcchhhcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHH
Confidence 4455644344567899999999999865442 1223577999999999999999999999999999999999985 7
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEM 164 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~ 164 (265)
+..++++||+|+++.+.|+++...+... +..|+++..++. |++++++++.+ ++++|++++|+||+|.+.|+++|+++
T Consensus 85 l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~l 162 (385)
T PRK08574 85 FFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKA 162 (385)
T ss_pred HHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHH
Confidence 7788999999999999999988766443 778999888764 68999999987 89999999999999999999999999
Q ss_pred HHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619 165 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244 (265)
Q Consensus 165 a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (265)
|+++|+++++|++|+.+....+...+.|+++.|++|+++|+.+..+|+++..++.+.+.....+...+..+++..+++++
T Consensus 163 a~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l 242 (385)
T PRK08574 163 AKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVL 242 (385)
T ss_pred HHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999988776677788999999999999888777789777776677676666666678889999999999
Q ss_pred hccCchHhhHHHHhhchhcc
Q 024619 245 RGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~l 264 (265)
++++++..|++++.+|+..+
T Consensus 243 ~~l~tL~~R~~~~~~na~~l 262 (385)
T PRK08574 243 RGLKTLEVRFERQCRNAMAI 262 (385)
T ss_pred cccCcHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 24
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=100.00 E-value=1.3e-34 Score=254.76 Aligned_cols=257 Identities=35% Similarity=0.621 Sum_probs=219.4
Q ss_pred CCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619 7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT 77 (265)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~ 77 (265)
.+.++..++.+.. .+..+...+|++++.++..+... ....+.|++.++|..+++++.++++.|.+.+++++
T Consensus 7 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s 86 (398)
T PRK08249 7 AGVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAFS 86 (398)
T ss_pred CCcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEeC
Confidence 3455677877632 34468899999999998655431 22357899999999999999999999999999999
Q ss_pred chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
+|++|+. ++..++++||+|+++.+.|+++...+...++..|++++.++..|++++++++++++++|++++|+||+|.+.
T Consensus 87 sG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~ 166 (398)
T PRK08249 87 TGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIV 166 (398)
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccC
Confidence 9999986 667789999999999999998877776667889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619 157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 236 (265)
|+++|+++|+++|+++|+|++|+.+....+...+.|+++.|++|+++|+++.++|+++.++ .+.+.+...+...+..++
T Consensus 167 dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~-~l~~~l~~~~~~~g~~~s 245 (398)
T PRK08249 167 DIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSK-ELMEQVYHYREINGATMD 245 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCH-HHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999987766666778999999999999776655678887654 455656666677788999
Q ss_pred hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 237 PFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+..+++++++++++..|++++++|+..+
T Consensus 246 ~~~a~l~l~~l~tL~~R~~~~~~na~~l 273 (398)
T PRK08249 246 PMSAYLILRGMKTLKLRVRQQQESAMAL 273 (398)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888754
No 25
>PRK07503 methionine gamma-lyase; Provisional
Probab=100.00 E-value=2.2e-34 Score=253.86 Aligned_cols=256 Identities=38% Similarity=0.630 Sum_probs=215.6
Q ss_pred CcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619 8 GVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78 (265)
Q Consensus 8 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~ 78 (265)
+.++..++.+. ..+..|...||++++.++..+... ....+.|++.++|..+++++.+++++|++..+++++
T Consensus 9 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~s 88 (403)
T PRK07503 9 GFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALAS 88 (403)
T ss_pred CccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEcC
Confidence 44566777762 234468999999999998655421 224578999999999999999999999999999999
Q ss_pred hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619 79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD 157 (265)
Q Consensus 79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~ 157 (265)
|++|+. ++..++++||+|+++.+.|......+...++..|++++.++..|++++++++.+++++|++++|+||+|.+.|
T Consensus 89 G~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~d 168 (403)
T PRK07503 89 GMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLVD 168 (403)
T ss_pred HHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeeeC
Confidence 999986 6667899999999999999877655556677899999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH--HHHhccCCC
Q 024619 158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGL 235 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~--~~~~~~~~~ 235 (265)
+++|+++|+++|+++|+|++|+.+....+...+.|+++.|++|++++++++++|+++.++ .+.+..+. .....+..+
T Consensus 169 i~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~-~l~~~l~~~~~~~~~g~~~ 247 (403)
T PRK07503 169 IAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGK-ALADRIRLEGLKDMTGAVM 247 (403)
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCH-HHHHHHHhhhHHhCcCCCC
Confidence 999999999999999999999988776677778999999999999877778899998554 44444442 244456789
Q ss_pred ChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 236 APFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
++..+++++++|+++..|++++.+|+..+
T Consensus 248 s~~~a~l~l~~L~tl~~r~~~~~~na~~~ 276 (403)
T PRK07503 248 SPFDAFLLMRGLKTLALRMDRHCASAQAV 276 (403)
T ss_pred CHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887754
No 26
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=1.1e-34 Score=255.54 Aligned_cols=258 Identities=31% Similarity=0.477 Sum_probs=219.8
Q ss_pred CCcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619 7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78 (265)
Q Consensus 7 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~ 78 (265)
.++++..++.+...+..|...||++++.++..+... ....+.|+|.|+|..+++++.++++.|.+.+++++|
T Consensus 5 ~~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~S 84 (432)
T PRK06702 5 WGKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATAS 84 (432)
T ss_pred CCcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEECC
Confidence 345677788773233468899999999998655421 123577899999999999999999999999999999
Q ss_pred hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-CDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
|++|+. ++.+++++||+|+++.+.|.+....+...+...|+++.+++. .|++++++++++++++|++++|.||++.+.
T Consensus 85 G~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~ 164 (432)
T PRK06702 85 GQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVL 164 (432)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCcccccc
Confidence 999996 677889999999999999998887766667889999999998 499999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech---------h--------
Q 024619 157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------R-------- 219 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~---------~-------- 219 (265)
|+++|+++|+++|+++++|++++.+....|.+.+.||++.|++||++|+.+..+|+++.... .
T Consensus 165 Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~ 244 (432)
T PRK06702 165 NFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSY 244 (432)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccc
Confidence 99999999999999999999999888888999999999999999999999999998874221 0
Q ss_pred --------------HHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 220 --------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 220 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+...........+..+++.++|+++++|+++..|++++++|+..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~l 303 (432)
T PRK06702 245 HGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAV 303 (432)
T ss_pred cccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 111122344556789999999999999999999999999998765
No 27
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=100.00 E-value=2.8e-34 Score=252.33 Aligned_cols=256 Identities=36% Similarity=0.617 Sum_probs=215.1
Q ss_pred cceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619 9 VSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG 79 (265)
Q Consensus 9 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g 79 (265)
.++..++.+. ..+..|...||++++.++...... ....|.|++.|+|..+++++.+++++|.+..+++++|
T Consensus 4 ~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~sG 83 (391)
T TIGR01328 4 FATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATSSG 83 (391)
T ss_pred cccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEECCH
Confidence 3466777772 234468999999999998655421 2235789999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
++|+. ++..++++||+|+++.+.|+.....+...+...|+++.+++.+|++++++++.+++++|++++|+||+|.+.|+
T Consensus 84 ~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~dl 163 (391)
T TIGR01328 84 MGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLIDM 163 (391)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccCH
Confidence 98886 66778999999999999998877777777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH-HhccCCCCh
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAP 237 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~-~~~~~~~~~ 237 (265)
++|+++|+++|+++++|++|+.+....+...+.|+++.|++|+++++++.++|+++.+++.+........ ...+..+++
T Consensus 164 ~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~ 243 (391)
T TIGR01328 164 ERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISP 243 (391)
T ss_pred HHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999998887777788999999999999987766668888776654433322222 234667889
Q ss_pred hHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 238 FDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
..+++++++|+++..|++++.+|+..+
T Consensus 244 ~~a~l~l~~L~tl~~r~~~~~~na~~l 270 (391)
T TIGR01328 244 FDAWLILRGLKTLNIRMKRHSENAMKV 270 (391)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999998887654
No 28
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=100.00 E-value=5e-34 Score=251.26 Aligned_cols=261 Identities=33% Similarity=0.522 Sum_probs=220.0
Q ss_pred CCCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619 4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALC 75 (265)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~ 75 (265)
.+..+..+..++.+...+.++...+|++...++..... .....+.|++.++|..+++++.+++++|.+..++
T Consensus 6 ~~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~ 85 (398)
T PRK07504 6 ARKWRPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARA 85 (398)
T ss_pred cccCCcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeE
Confidence 34455567777777434557888889999987754331 1234577899899999999999999999998889
Q ss_pred ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619 76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ 154 (265)
Q Consensus 76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~ 154 (265)
+++|++|+. ++..++++||+|+++++.|+++...+...++..|++++.++..|++++++++.+++++|++++|+||+|.
T Consensus 86 ~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~ 165 (398)
T PRK07504 86 TASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLE 165 (398)
T ss_pred ecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcE
Confidence 999998885 6677899999999999999988776666677889999999988999999999999999999999999999
Q ss_pred cccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCC
Q 024619 155 ICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG 234 (265)
Q Consensus 155 ~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~ 234 (265)
+.|+++|.++|+++|+++++|++|+.+....+...+.|+++.|++|+++|++...+|+++.+++.+.+.........+..
T Consensus 166 v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~ 245 (398)
T PRK07504 166 VIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPS 245 (398)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998877777788999999999999977654556788877766655455555567788
Q ss_pred CChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 235 LAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+++..++.++++|+++..|++++.+|++.+
T Consensus 246 ~s~~~A~~~l~~L~tl~~R~~~~~~na~~l 275 (398)
T PRK07504 246 LSPFNAWTLLKGLETLPVRVRQQTESAAAI 275 (398)
T ss_pred CCHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 29
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=5e-34 Score=252.78 Aligned_cols=264 Identities=35% Similarity=0.513 Sum_probs=221.9
Q ss_pred CCCCCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCC
Q 024619 1 MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD 71 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~ 71 (265)
|-+|+..+.++..++.+.. .+..|...+|++++.++..+... ....+.|+|.++|..+++++.++++.|.+
T Consensus 1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~ 80 (433)
T PRK08134 1 MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGV 80 (433)
T ss_pred CCCCCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCC
Confidence 5678888888888888732 33468899999999998655421 23457899999999999999999999999
Q ss_pred ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619 72 RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN 150 (265)
Q Consensus 72 ~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n 150 (265)
..++++||++|+. ++..++++||+|+++...|++....+...++..|+++++++..|++++++++++++++|++++++|
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~n 160 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGN 160 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCc
Confidence 8999999999986 667789999999999999998877665666788999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH----------
Q 024619 151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------- 220 (265)
Q Consensus 151 p~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~---------- 220 (265)
|+|.+.|+++|+++|+++|+++++|.+++.+....+...+.|+++.|.+||++|++...+|+++......
T Consensus 161 p~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~ 240 (433)
T PRK08134 161 PGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPEL 240 (433)
T ss_pred ccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccc
Confidence 9999999999999999999999999999999888888889999999999999877777778776421100
Q ss_pred ----------------------HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 221 ----------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 221 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.+.........+..+++.++|+++++|+++..|++++.+|+.++
T Consensus 241 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~l 306 (433)
T PRK08134 241 TEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKV 306 (433)
T ss_pred cCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 00111122345678999999999999999999999999998765
No 30
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=100.00 E-value=3.4e-34 Score=250.63 Aligned_cols=241 Identities=54% Similarity=0.862 Sum_probs=211.0
Q ss_pred CCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCC
Q 024619 24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE 94 (265)
Q Consensus 24 g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~ 94 (265)
|+..||++++.++..+... ....+.|++.++|..+++++.+++++|.++.+++++|++|+. ++..++++||
T Consensus 1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd 80 (369)
T cd00614 1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD 80 (369)
T ss_pred CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence 3567888888887654421 234688999999999999999999999999999999999986 7778899999
Q ss_pred EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
+|+++.+.|++....+...++..|+++..++.+|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++++
T Consensus 81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~liv 160 (369)
T cd00614 81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVV 160 (369)
T ss_pred EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence 99999999999887776677788999999999999999999988999999999999999999999999999999999999
Q ss_pred eCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchHhhH
Q 024619 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 254 (265)
Q Consensus 175 D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (265)
|++|+.+....+...+.|+++.|++|+++|++++++|+++.+++.+.+.+.......+..+++..++.++++++++..++
T Consensus 161 D~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~ 240 (369)
T cd00614 161 DNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240 (369)
T ss_pred ECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH
Confidence 99999887767778899999999999998777788999998774565666666666778899999999999999999999
Q ss_pred HHHhhchhcc
Q 024619 255 EKQQVCFFDL 264 (265)
Q Consensus 255 ~~~~~~~~~l 264 (265)
+++.+|+..+
T Consensus 241 ~~~~~na~~l 250 (369)
T cd00614 241 ERHSENALKV 250 (369)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 31
>PRK06234 methionine gamma-lyase; Provisional
Probab=100.00 E-value=5.6e-34 Score=251.26 Aligned_cols=259 Identities=38% Similarity=0.645 Sum_probs=217.3
Q ss_pred CCCCcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619 5 EEPGVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC 75 (265)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~ 75 (265)
+..+.++..++.+. ..+..++..+|++++.++..+... ....+.|++.++|...++++.+++++|.+++++
T Consensus 5 ~~~~~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~ 84 (400)
T PRK06234 5 KKMGFATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVV 84 (400)
T ss_pred ccCCccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEE
Confidence 44455666777762 234468899999999987654432 133466999999999999999999999999999
Q ss_pred ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619 76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ 154 (265)
Q Consensus 76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~ 154 (265)
+++|++|+. ++..++++||+|+++.|.|+.+...+...++..|++++.++..|++++++++.+++++|++++|+||+|.
T Consensus 85 ~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~ 164 (400)
T PRK06234 85 AASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLK 164 (400)
T ss_pred EcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCC
Confidence 999998886 6778899999999999999988877666678899999999999999999999989999999999999999
Q ss_pred cccHHHHHHHHHHc--CCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH--HHHh
Q 024619 155 ICDIRKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNA 230 (265)
Q Consensus 155 ~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~--~~~~ 230 (265)
+.|+++|.++|+++ |+++++|++|+.+....+...+.|+++.|++|++++++..++|+++++++.+ +.+.. ....
T Consensus 165 v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~-~~l~~~~~~~~ 243 (400)
T PRK06234 165 VTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFI-NQVKLFGIKDM 243 (400)
T ss_pred cCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHH-HHHHHHHHHHh
Confidence 99999999999997 9999999999988877777778999999999999766656679998877543 43332 2335
Q ss_pred ccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 231 EGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.+..+++..+++.+++|+++..+++++.+|+..+
T Consensus 244 ~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~ 277 (400)
T PRK06234 244 TGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKV 277 (400)
T ss_pred cCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999888653
No 32
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-34 Score=244.11 Aligned_cols=256 Identities=46% Similarity=0.695 Sum_probs=232.7
Q ss_pred cceeEeeccCCCCC--CCCCCCCee--eccccccC-CCCC-CCC---CccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619 9 VSTLLMNFSNEFDP--YGALSTPLY--QTATFKQP-SATE-NGP---YDYTRSGNPTRDALESLLAKLDKADRALCFTSG 79 (265)
Q Consensus 9 ~~~~~~~~~~~~~~--~g~~~~~~~--~~~~~~~~-~~~~-~~~---~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g 79 (265)
.++..++.+..++. .+...+|+. ...+|... .... ... +.|+|.|+|.+..+++.++.+.|++..++++||
T Consensus 22 ~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~~l~fsSG 101 (409)
T KOG0053|consen 22 LDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQDLNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAHALLFSSG 101 (409)
T ss_pred cchhhhhcccccchhccccccCceecccceeecccCccccccccccccccccCCCCchHHHHHHHHHHhCCceEEEeccc
Confidence 55667777766566 788999999 66666554 2222 223 899999999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
+.|+. +++.++.+|++|+..+..|..+.+.++.....+|++..++++++++++++++.+++++|++++|.||++.+.|+
T Consensus 102 maA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI 181 (409)
T KOG0053|consen 102 MAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPDI 181 (409)
T ss_pred HHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEECCCCCccccccH
Confidence 98875 78888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (265)
++|.++|+++|+++++|++.+.+...+++..|+||++.|++||++|+..+++|.++.+.......++..+...+..++|.
T Consensus 182 ~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~ 261 (409)
T KOG0053|consen 182 EKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPF 261 (409)
T ss_pred HHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999888999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHhccCchHhhHHHHhhchhcc
Q 024619 239 DCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.+|+..|.++++..|+.++.+|++.+
T Consensus 262 ~~~ll~Rglktl~lRi~~~~ena~~~ 287 (409)
T KOG0053|consen 262 DLFLLSRGLKTLHLRINKHSENALKI 287 (409)
T ss_pred HHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 99999999999999999999997653
No 33
>PRK05939 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-34 Score=248.93 Aligned_cols=240 Identities=33% Similarity=0.542 Sum_probs=203.3
Q ss_pred CCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCC
Q 024619 24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGE 94 (265)
Q Consensus 24 g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~ 94 (265)
|...||++++.++..+... ....+.|+|.|+|..+++++.++++.|.+..+++++|++|+. ++..++++||
T Consensus 8 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd 87 (397)
T PRK05939 8 GAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGD 87 (397)
T ss_pred CCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCC
Confidence 7788999999998654421 223578999999999999999999999999999999999986 6778899999
Q ss_pred EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
+|+++++.|+++...+.. ++..|++++.++..|++++++++.+++++|++++|+||+|.+.|+++|+++|+++|+++++
T Consensus 88 ~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 88 HLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred EEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 999999999988766633 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech--------h-------------HHHHHHHHHHhccC
Q 024619 175 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------R-------------LAKELYFLQNAEGS 233 (265)
Q Consensus 175 D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~--------~-------------~~~~~~~~~~~~~~ 233 (265)
|++|+.+....+...+.|+++.|++|+++|+++.++|+++.+.. . +...........+.
T Consensus 167 D~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (397)
T PRK05939 167 DNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA 246 (397)
T ss_pred ECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC
Confidence 99998877666778899999999999998887776776653221 0 11111122335688
Q ss_pred CCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 234 GLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.+++.++|+++++++++..|++++.+|+..+
T Consensus 247 ~~~p~~a~l~~rgl~tl~~R~~~~~~na~~l 277 (397)
T PRK05939 247 TLSSEAAHRIAIGAETLALRVDRSCSNALAL 277 (397)
T ss_pred CCCHHHHHHHHcCcCcHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998765
No 34
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=100.00 E-value=1.1e-33 Score=248.68 Aligned_cols=256 Identities=37% Similarity=0.628 Sum_probs=214.3
Q ss_pred CcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecch
Q 024619 8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG 79 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g 79 (265)
+.++..++.+...+..+...+|+++..++...... ....+.|++.++|..+++++.+++++|.++++++++|
T Consensus 6 ~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~ssG 85 (390)
T PRK08133 6 GFDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVATASG 85 (390)
T ss_pred CcchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEECCH
Confidence 34566777774345578888899999887544321 1234678988999999999999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
++|+. ++..++++||+|+++.+.|++....+...++..|++++.++.+|++++++++.+++++|++++|+||+|.+.|+
T Consensus 86 ~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl 165 (390)
T PRK08133 86 MAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADI 165 (390)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCH
Confidence 99986 67788999999999999999887766666778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (265)
++|+++|+++|+++++|++|+.+....+...+.|+++.|++|++++++...+|+++.+++.+ ..........+..+++.
T Consensus 166 ~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~-~~~~~~~~~~g~~~~~~ 244 (390)
T PRK08133 166 AALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELM-EEVFGFLRTAGPTLSPF 244 (390)
T ss_pred HHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHH-HHHHHHHHHhCCCCCHH
Confidence 99999999999999999999888777777778999999999999665444568888776544 43444455567788899
Q ss_pred HHHHHHhccCchHhhHHHHhhchhcc
Q 024619 239 DCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.++.++++++++..|++++.+|+..+
T Consensus 245 ~a~~~l~gl~tl~~R~~~~~~~a~~l 270 (390)
T PRK08133 245 NAWVFLKGLETLSLRMEAHSANALAL 270 (390)
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999887754
No 35
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=1.6e-33 Score=249.39 Aligned_cols=258 Identities=36% Similarity=0.534 Sum_probs=216.7
Q ss_pred CCcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEec
Q 024619 7 PGVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT 77 (265)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~ 77 (265)
.+.++..++.+. ..+..+...||++++.++..+... ....+.|+|.++|..+.+++.++++.|.+..++++
T Consensus 12 ~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~s 91 (436)
T PRK07812 12 WSFETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLA 91 (436)
T ss_pred CCcchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEc
Confidence 445566777762 233368899999999998765421 22457799999999999999999999999999999
Q ss_pred chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619 78 SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 78 ~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~~~~i~~~~~~np~G~~ 155 (265)
+|++|+. ++.+++++||+|+++...|.+....+...++..|++++.++ ..|++++++++++++++|++++++||+|.+
T Consensus 92 SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v 171 (436)
T PRK07812 92 SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDV 171 (436)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCee
Confidence 9999985 77888999999999999998887666666778899999996 668999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechh----------------
Q 024619 156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER---------------- 219 (265)
Q Consensus 156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~---------------- 219 (265)
.|+++|.++|+++|+++++|++++.+....+...+.|+++.|++|+++|+++..+|+++.....
T Consensus 172 ~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~ 251 (436)
T PRK07812 172 LDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPS 251 (436)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcc
Confidence 9999999999999999999999998888888888999999999999988888888888753310
Q ss_pred --------------HHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 220 --------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 220 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+.+.........|..+++.++|+++++|+++..|++++.+|+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~l 310 (436)
T PRK07812 252 YHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRV 310 (436)
T ss_pred cccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 011122344567899999999999999999999999999999875
No 36
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=1.7e-33 Score=249.28 Aligned_cols=254 Identities=36% Similarity=0.560 Sum_probs=212.5
Q ss_pred eeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHH
Q 024619 11 TLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA 81 (265)
Q Consensus 11 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~ 81 (265)
+..++.+. ..+..++..+|++++.++..+... ....+.|+|.++|..+++++.++++.|.+..+++++|++
T Consensus 5 t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~~ 84 (425)
T PRK06084 5 TLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASGMA 84 (425)
T ss_pred hhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEehhHHH
Confidence 44566552 233458889999999998665431 223578999999999999999999999999999999999
Q ss_pred HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619 82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
|+. ++..++++||+|+++.+.|++....+...++..|+++.+++..|++++++++.+++++|++++|+||+|.+.|+++
T Consensus 85 Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~ 164 (425)
T PRK06084 85 AITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDIQA 164 (425)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHH
Confidence 996 6778899999999999999987766666667789999999999999999999989999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH-H------------------
Q 024619 161 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-A------------------ 221 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~-~------------------ 221 (265)
|+++|+++|+++|+|++|+.+....+...+.|+++.|++|+++|++...+|+++.+.... .
T Consensus 165 I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (425)
T PRK06084 165 LADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHG 244 (425)
T ss_pred HHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccccc
Confidence 999999999999999999988887788889999999999999988888788887533210 0
Q ss_pred --------------HHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 222 --------------KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 222 --------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
..........+..+++.++|+++++|+++..|++++++|+.++
T Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~l 301 (425)
T PRK06084 245 VTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKV 301 (425)
T ss_pred chhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHH
Confidence 0011223456788999999999999999999999999998865
No 37
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=3.8e-33 Score=247.48 Aligned_cols=257 Identities=35% Similarity=0.533 Sum_probs=214.8
Q ss_pred CcceeEeeccC-CCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619 8 GVSTLLMNFSN-EFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78 (265)
Q Consensus 8 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~ 78 (265)
+.++..++.+. .....|...+|+.++.++..+... ....+.|++.++|..+++++.++++.|.+..+++++
T Consensus 7 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~~S 86 (427)
T PRK05994 7 GFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAVAS 86 (427)
T ss_pred CcchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEEcC
Confidence 45566777762 233458888999999998654421 123467999999999999999999999999999999
Q ss_pred hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc
Q 024619 79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD 157 (265)
Q Consensus 79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~ 157 (265)
|++|+. ++.+++++||+|+++.+.|++....+...++..|++++.++..|++++++++++++++|++++|+||+|.+.|
T Consensus 87 G~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v~d 166 (427)
T PRK05994 87 GHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTD 166 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecC
Confidence 999986 6777899999999999999988766666677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeech-h-----------------
Q 024619 158 IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R----------------- 219 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~-~----------------- 219 (265)
+++|+++|+++|+++++|++++.+....+...+.|+++.|++|+++|+.+..+|+++.... .
T Consensus 167 l~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~ 246 (427)
T PRK05994 167 IAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEY 246 (427)
T ss_pred HHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchh
Confidence 9999999999999999999999888878888899999999999999888888888874221 0
Q ss_pred ----HHH----------HHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 220 ----LAK----------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 220 ----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+.+ .........+..+++.++|+++++|+++..|++++++|+..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~l 305 (427)
T PRK05994 247 HGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV 305 (427)
T ss_pred hhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence 111 111123456778999999999999999999999999998764
No 38
>PRK07582 cystathionine gamma-lyase; Validated
Probab=100.00 E-value=5.4e-33 Score=242.44 Aligned_cols=253 Identities=34% Similarity=0.502 Sum_probs=211.1
Q ss_pred CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
+.++..++.+.. .+..|...+|++++.++..+.......+.|++.++|...++++.+++++ .++.+++++|++|+. +
T Consensus 3 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~ 81 (366)
T PRK07582 3 GDGTRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAV 81 (366)
T ss_pred CcccceeeCCCCCCCCCCCccCCccccceEEccCccccCCceeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHH
Confidence 445666776622 2336889999999999876643233457799999999999999999999 667999999998886 6
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+.+++++||+|++.+|.|..+...+...++..|++++.++..+... .+.+++++|++++|+||+|.+.|+++|+++|
T Consensus 82 l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~~t~lV~le~p~NPtg~v~di~~I~~~a 158 (366)
T PRK07582 82 LRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALAGADLVLAETPSNPGLDVCDLAALAAAA 158 (366)
T ss_pred HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---HhccCceEEEEECCCCCCCCccCHHHHHHHH
Confidence 6778999999999999998887655455677899999999775432 3346899999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 166 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++|+++++|++|+.+....+.+.+.|+++.|++||++|++|+++|+++.+++.+.+.....+...+..+++..++++++
T Consensus 159 ~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r 238 (366)
T PRK07582 159 HAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHR 238 (366)
T ss_pred HHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 99999999999997654445666788999999999999999999999988766777767777777788899999999999
Q ss_pred ccCchHhhHHHHhhchhcc
Q 024619 246 GVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~l 264 (265)
+++++..|++++.+|+..+
T Consensus 239 ~l~tl~~R~~~~~~na~~l 257 (366)
T PRK07582 239 SLGTLGLRFARQCANALAV 257 (366)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 39
>PRK07049 methionine gamma-lyase; Validated
Probab=100.00 E-value=7.8e-33 Score=245.34 Aligned_cols=259 Identities=31% Similarity=0.533 Sum_probs=212.8
Q ss_pred CCCCcceeEeeccCCCCC-CCCCCCCeeeccccccCCCC------------------CCCCCccCCCCChhHHHHHHHHH
Q 024619 5 EEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT------------------ENGPYDYTRSGNPTRDALESLLA 65 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~------------------~~~~~~y~~~g~~~~~~l~~~l~ 65 (265)
++.+.++..++.+...+. .|...+|++++.++..+... ....+.|++.++|..+.+++.++
T Consensus 14 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA 93 (427)
T PRK07049 14 RELHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLA 93 (427)
T ss_pred CcCCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHH
Confidence 445556778887732232 68899999999998654421 01237789999999999999999
Q ss_pred hHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcC-----C
Q 024619 66 KLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIG-----P 138 (265)
Q Consensus 66 ~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~-----~ 138 (265)
++.|.++++++++|++|+. ++.+++++||+|++++|.|+.+...+...++..|++++.++ ..|.+++++++. +
T Consensus 94 ~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~ 173 (427)
T PRK07049 94 VYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKG 173 (427)
T ss_pred HHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCC
Confidence 9999999999999999986 67789999999999999999998665555677899866554 457777776653 5
Q ss_pred CceEEEEecCCCCccccccHHHHHHHHHH------cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeE
Q 024619 139 WTKLVWVESPTNPRQQICDIRKIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGV 212 (265)
Q Consensus 139 ~~~~i~~~~~~np~G~~~~l~~i~~~a~~------~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~ 212 (265)
++++|++++|+||||.+.|+++|.+++++ +++++++|++|..+....+...+.|+++.|+||+++|++|+|+|+
T Consensus 174 ~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~ 253 (427)
T PRK07049 174 RVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGA 253 (427)
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEE
Confidence 79999999999999999999999999988 899999999988766666777789999999999998889999999
Q ss_pred EEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 213 LAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
++.+++ +.+.+...+...+..+++..++.+++.|+++..|++++.+|+..+
T Consensus 254 vv~~~~-l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~l 304 (427)
T PRK07049 254 VLGRKA-LIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAV 304 (427)
T ss_pred EECCHH-HHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 987654 556566677777888999999999999999999999888887654
No 40
>PRK06460 hypothetical protein; Provisional
Probab=100.00 E-value=1e-32 Score=241.33 Aligned_cols=251 Identities=32% Similarity=0.553 Sum_probs=208.6
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVT 87 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~ 87 (265)
.++..++.+ ..+..|...+|++++.++..+.. ..+.|++.++|..+++++.++++.|.+..+++++|++|+. ++.
T Consensus 3 ~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~---~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~ 78 (376)
T PRK06460 3 DATRTVRED-IDEATGAITTPIYQTTAYHYPEG---EKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTAL 78 (376)
T ss_pred cceeeeecC-CCCCCCCccCCccCCcceeeCCC---CCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHH
Confidence 456677776 34456888999999999866542 3688999999999999999999999998999999999886 677
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~ 167 (265)
.++++||+|++..+.|++....+...++..|+++..++..+.+.+++.+.+++++|++++|+||||.+.|+++|+++|++
T Consensus 79 al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~ 158 (376)
T PRK06460 79 ALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKE 158 (376)
T ss_pred HHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 88999999999998887666565567788899999998877666666667789999999999999999999999999999
Q ss_pred cCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 168 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 168 ~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
+|+++++|++|+.+....+...+.|+++.|+||+++|+++.++|+++.+++ +.+.+...+...+..+++..++.+++.+
T Consensus 159 ~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~~l~~~~~~~g~~~~~~~a~~~l~~~ 237 (376)
T PRK06460 159 NGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGI 237 (376)
T ss_pred cCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHH-HHHHHHHHHHhcCCCCCHHHHHHHHhch
Confidence 999999999998775545556678999999999998877788999987654 5555555666667778888899999999
Q ss_pred CchHhhHHHHhhchhcc
Q 024619 248 KTMALRVEKQQVCFFDL 264 (265)
Q Consensus 248 ~~~~~~~~~~~~~~~~l 264 (265)
+.+..++++..+|...+
T Consensus 238 ~~l~~r~~~~~~n~~~l 254 (376)
T PRK06460 238 KTLKIRMDVINRNAEQI 254 (376)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99888888888877654
No 41
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=100.00 E-value=1e-32 Score=244.32 Aligned_cols=261 Identities=35% Similarity=0.509 Sum_probs=217.1
Q ss_pred CCCCCcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceE
Q 024619 4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74 (265)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i 74 (265)
.++...++..++-+.. .+..|...||++++.++..+... ....+.|++.++|..+.+++.++++.|.+..+
T Consensus 9 ~~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v 88 (437)
T PRK05613 9 ADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAV 88 (437)
T ss_pred cccCCcchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEE
Confidence 3444555667777732 33468999999999998655421 23357899999999999999999999999999
Q ss_pred EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619 75 CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPWTKLVWVESPTNPR 152 (265)
Q Consensus 75 ~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~~~~i~~~~~~np~ 152 (265)
+++||++|+. ++..++++||+|+++...|.+....+...++..|+++.+++ ..|++++++++++++++|+++++.||+
T Consensus 89 ~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~ 168 (437)
T PRK05613 89 AFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQ 168 (437)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCC
Confidence 9999998885 67778899999999999999986666566788999999997 558999999999999999999999999
Q ss_pred cccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechh-------------
Q 024619 153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER------------- 219 (265)
Q Consensus 153 G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~------------- 219 (265)
|.+.|+++|.++|+++|+++++|.+++.+....+...+.|+++.|++|+++|++...+|+++.+...
T Consensus 169 ~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~ 248 (437)
T PRK05613 169 ADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFP 248 (437)
T ss_pred CcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCC
Confidence 9999999999999999999999999998887778888999999999999987766678888753220
Q ss_pred ----------------------HHHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 220 ----------------------LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 220 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+.+.........|..++|.++|+++++|+++..|++++.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~l 315 (437)
T PRK05613 249 YFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKV 315 (437)
T ss_pred CCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHH
Confidence 011122345567899999999999999999999999999999875
No 42
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=100.00 E-value=2.4e-32 Score=239.56 Aligned_cols=251 Identities=39% Similarity=0.623 Sum_probs=209.8
Q ss_pred EeeccCCCCCCCCCCCCeeeccccccCCC--------CCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 13 LMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
.++.+...+..+...+|++++.++..... .....+.|++.++|..+++++.+++++|.++++++++|++|+.
T Consensus 4 ~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~ 83 (380)
T TIGR01325 4 AIRGGKERTEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATATGMSAIQ 83 (380)
T ss_pred eEECCCCCCCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence 45544223446777788999888754431 1234577898899999999999999999999999999999986
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
++..++++||+|+++.+.|++....+...++..|+++.+++.+|++++++++.+++++|++++|+||+|.+.|+++|.+
T Consensus 84 ~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~ 163 (380)
T TIGR01325 84 AALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAE 163 (380)
T ss_pred HHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHH
Confidence 6677899999999999999887766666778899999999999999999999889999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619 164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243 (265)
Q Consensus 164 ~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (265)
+|+++|+++++|++|+.+....+...+.|+++.|++|+++|++...+|+++.+++. .+.+.......+..+++..++.+
T Consensus 164 la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~-~~~l~~~~~~~g~~~~p~~a~~~ 242 (380)
T TIGR01325 164 LAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEEL-MAEVAVYLRHTGPAMSPFNAWVL 242 (380)
T ss_pred HHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHH-HHHHHHHHHhhCCCCCHHHHHHH
Confidence 99999999999999988776667778899999999999977655567888877654 44455555566778889999999
Q ss_pred HhccCchHhhHHHHhhchhcc
Q 024619 244 LRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~l 264 (265)
+++++.+..|++++.+++..+
T Consensus 243 l~~l~tl~~r~~~~~~~a~~l 263 (380)
T TIGR01325 243 LKGLETLSLRMQKQFDSALAI 263 (380)
T ss_pred HhccCcHHHHHHHHHHHHHHH
Confidence 999999999999998887754
No 43
>PLN02242 methionine gamma-lyase
Probab=100.00 E-value=1e-32 Score=243.77 Aligned_cols=255 Identities=30% Similarity=0.476 Sum_probs=207.2
Q ss_pred CcceeEeeccCCCCCCCCCCCCeeeccccccCCCC-------CC-----CCCccCCCCChhHHHHHHHHHhHhCCCceEE
Q 024619 8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-------EN-----GPYDYTRSGNPTRDALESLLAKLDKADRALC 75 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~-----~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~ 75 (265)
.+....++.+...+..+...||++++.++..+... .. ..+.|+|.++|..+++++.+++++|.+.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~ 96 (418)
T PLN02242 17 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYC 96 (418)
T ss_pred ChHHHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence 34456777774445457779999999998655421 11 2377999999999999999999999999999
Q ss_pred ecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhh-cCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCc
Q 024619 76 FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRV-TPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPR 152 (265)
Q Consensus 76 ~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~ 152 (265)
+++|++|+. ++.+++++||+|+++.|.|+.+...+... .+..|+++++++..|++++++++.+ ++++|++++|+|||
T Consensus 97 ~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPt 176 (418)
T PLN02242 97 TASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPT 176 (418)
T ss_pred EccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCC
Confidence 999999986 77888999999999999998886554333 3458999999999999999999987 59999999999999
Q ss_pred cccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH----
Q 024619 153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---- 228 (265)
Q Consensus 153 G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~---- 228 (265)
|.+.|+++|+++|+++|+++|+|++|+... ..+...+.|+++.|+||++++++..++|+++.+++.+.. +...+
T Consensus 177 G~v~dl~~I~~la~~~gi~livDea~~~~~-~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~-l~~~~~~~~ 254 (418)
T PLN02242 177 LTVADIPELARIAHEKGVTVVVDNTFAPMV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNS-MMDLHHGAL 254 (418)
T ss_pred CcccCHHHHHHHHHHhCCEEEEECCCCccC-CCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHH-HHHHhhhhh
Confidence 999999999999999999999999997544 345666899999999999977665668999877655443 33332
Q ss_pred HhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 229 NAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
...+..+++..++++.+.++.+..+++++.+|+..+
T Consensus 255 ~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~l 290 (418)
T PLN02242 255 MLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEY 290 (418)
T ss_pred hccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 235567778889999999999998988888887654
No 44
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=100.00 E-value=6.3e-32 Score=239.52 Aligned_cols=254 Identities=37% Similarity=0.569 Sum_probs=206.0
Q ss_pred ceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchH
Q 024619 10 STLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80 (265)
Q Consensus 10 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~ 80 (265)
++..++.+.. ....|...||++++.++...... ....+.|+|.++|..+++++.+++++|.++.+++++|+
T Consensus 3 ~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG~ 82 (418)
T TIGR01326 3 ETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVASGQ 82 (418)
T ss_pred cceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEccHH
Confidence 3556666522 23357889999999987654421 12347799999999999999999999999999999999
Q ss_pred HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619 81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 159 (265)
Q Consensus 81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~ 159 (265)
+|+. ++..++++||+|+++.+.|++....+...++..|++++.++.+|++++++++.+++++|++++|+||+|.+.|++
T Consensus 83 ~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~ 162 (418)
T TIGR01326 83 AAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIE 162 (418)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCHH
Confidence 9986 677889999999999999988776666777889999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH-------------------
Q 024619 160 KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL------------------- 220 (265)
Q Consensus 160 ~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~------------------- 220 (265)
+|.++|+++|+++|+|++|+.+....+...+.|+++.|++|++++ +|.+.|+++.+...+
T Consensus 163 ~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g-~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a 241 (418)
T TIGR01326 163 AIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGG-HGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHG 241 (418)
T ss_pred HHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccC-CccceEEEEEecccccccccccccccCCCCcccc
Confidence 999999999999999999998766667777899999999999965 455666665643211
Q ss_pred -------------HHHHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 221 -------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 221 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.+.........+..++|..+|.+.++++++..|++++..|+..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~l 298 (418)
T TIGR01326 242 LVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKV 298 (418)
T ss_pred chhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHH
Confidence 01111123345677789999999999999999999988877643
No 45
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-32 Score=226.27 Aligned_cols=260 Identities=37% Similarity=0.562 Sum_probs=229.4
Q ss_pred CCCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEe
Q 024619 5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF 76 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~ 76 (265)
...+.++..++-+..-.-.|....|+++..++..+... ...++-|+|.++|..+.++++++.+.|.-..+.+
T Consensus 4 ~~~~f~T~~vHag~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~ 83 (426)
T COG2873 4 ANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV 83 (426)
T ss_pred cccCcchhhhcCCCCCCCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence 34567788888885533388899999999998765532 4568899999999999999999999999899999
Q ss_pred cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619 77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 77 ~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~ 155 (265)
.||++|+. +++.+.++||.|+-+..-|.+....+...+++.|+++.+++.+|+|.++++++++||+|+++...||.+.+
T Consensus 84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v 163 (426)
T COG2873 84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV 163 (426)
T ss_pred ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc
Confidence 99999985 89999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHH-------------
Q 024619 156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK------------- 222 (265)
Q Consensus 156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~------------- 222 (265)
.|+++|.++|+++|+++|+|.+.+.+.+..|.+.|.||++.|++||++|.+..++|+++-.....+.
T Consensus 164 ~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p 243 (426)
T COG2873 164 LDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDP 243 (426)
T ss_pred cCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCc
Confidence 9999999999999999999999999988899999999999999999999999999998765432221
Q ss_pred -------------------HHHHHHHhccCCCChhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 223 -------------------ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 223 -------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
.......-.+..++|+.+|+.+.+++++.+|++++.+|++.+
T Consensus 244 ~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~v 304 (426)
T COG2873 244 SYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKV 304 (426)
T ss_pred cccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHH
Confidence 111222456789999999999999999999999999999875
No 46
>PRK05968 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=235.46 Aligned_cols=251 Identities=37% Similarity=0.601 Sum_probs=210.3
Q ss_pred EeeccCCCCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 13 LMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
+++-.-..+..++..||++++.++..+... ....+.|++.++|..+++++.+++++|.+..+++++|+.|+.
T Consensus 13 ~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~ 92 (389)
T PRK05968 13 LITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAIS 92 (389)
T ss_pred eeecCCCccCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence 344432334468889999999998665421 223577999999999999999999999999999999998886
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
++..++++||+|+++.+.|++....+...++..|+++++++..|++++++++ +++++|++++|+|+++.+.|+++|.+
T Consensus 93 ~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~ 171 (389)
T PRK05968 93 STVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAA 171 (389)
T ss_pred HHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHH
Confidence 6777899999999999999988777766778889999999999999999988 67899999999999999999999999
Q ss_pred HHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619 164 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243 (265)
Q Consensus 164 ~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (265)
+|+++|+++++|++|+.+....+...+.|+++.|++|+++|+++.++|+++.+++.+...........+..+++..++.+
T Consensus 172 la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~ 251 (389)
T PRK05968 172 LAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLL 251 (389)
T ss_pred HHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHH
Confidence 99999999999999998876667777899999999999988888789999876654433332222345677899999999
Q ss_pred HhccCchHhhHHHHhhchhcc
Q 024619 244 LRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~l 264 (265)
+++|+++..|++++.+++..+
T Consensus 252 l~~L~tl~~r~~~~~~~a~~l 272 (389)
T PRK05968 252 LRGLRTLPLRMKAHEASALEI 272 (389)
T ss_pred HcccCcHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 47
>PRK06434 cystathionine gamma-lyase; Validated
Probab=100.00 E-value=9.4e-31 Score=228.23 Aligned_cols=253 Identities=36% Similarity=0.603 Sum_probs=213.4
Q ss_pred CcceeEeeccCC-CCCCCCCCCCeeeccccccCCCC--------CCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecc
Q 024619 8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78 (265)
Q Consensus 8 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~ 78 (265)
+.++..++.+.. .+..|...+|++.+.++...... ....+.|++.|+|..+++++.++++.|.+.+++++|
T Consensus 8 ~~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~sS 87 (384)
T PRK06434 8 GFNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSFSS 87 (384)
T ss_pred CcccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEeCC
Confidence 344566776622 23468889999999987654421 123578999999999999999999999999999999
Q ss_pred hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccccc
Q 024619 79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 79 g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~ 156 (265)
|+.|+. ++++++++||+|+++.+.|......+...+...|+++++++.++.+.+. +. +++++|+++++.||++.+.
T Consensus 88 G~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~v~ 165 (384)
T PRK06434 88 GMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVP 165 (384)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCceee
Confidence 999996 7778899999999998888888777667778899999999988766655 44 4799999999999999999
Q ss_pred cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619 157 DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 236 (265)
|+++|+++|++++ +++|.+++.+....+...+.|++++|.+|+++|+++..+|+++.+++.+.+.........+..++
T Consensus 166 Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~ 243 (384)
T PRK06434 166 DIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPD 243 (384)
T ss_pred cHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCC
Confidence 9999999999998 46699998888888889999999999999999888788999988777776666655556788889
Q ss_pred hhHHHHHHhccCchHhhHHHHhhchhcc
Q 024619 237 PFDCWICLRGVKTMALRVEKQQVCFFDL 264 (265)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l 264 (265)
+.++|+++++|+++..|++++++|+..+
T Consensus 244 ~~~A~l~~~gL~tL~~R~~r~~~~a~~~ 271 (384)
T PRK06434 244 PIQAYLALRGLKTLGLRMEKHNKNGMEL 271 (384)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 48
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=4e-29 Score=219.14 Aligned_cols=228 Identities=23% Similarity=0.272 Sum_probs=171.1
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecch-HHHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAAL 83 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-~~al 83 (265)
..+|+++ ..+..-..|+++.++...... .+...|++. |.+ +|+++.+++.+.+|.+ +.+++|+| ++|+
T Consensus 28 ~~vi~l~-iG~Pd~~~p~~i~~a~~~a~~----~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al 102 (393)
T COG0436 28 EDVIDLS-IGEPDFPTPEHIIEAAIEALE----EGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL 102 (393)
T ss_pred CCEEEeC-CCCCCCCCCHHHHHHHHHHHh----cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence 4589998 444433334444444321111 122156566 997 4999999999998733 43666655 4998
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------CHHHHHhhcCCCceEEEEecCCCCccc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQ 154 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~ 154 (265)
. ++++++++||+|++++|.|+.|. ...+..|.+++.+++. |++++++++.+++|+|++++||||||.
T Consensus 103 ~~~~~a~~~pGDeVlip~P~Y~~y~----~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGa 178 (393)
T COG0436 103 FLAFLALLNPGDEVLIPDPGYPSYE----AAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGA 178 (393)
T ss_pred HHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCc
Confidence 6 88899999999999999999997 6668889999998842 699999999999999999999999999
Q ss_pred ccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619 155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 155 ~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
+++ +++|+++|++||++||.||+|..-.+. +.. ..+..|.+.||||.+ +.+|+|+||++++++.+.+
T Consensus 179 v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~~ 257 (393)
T COG0436 179 VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELIA 257 (393)
T ss_pred CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHHH
Confidence 965 799999999999999999999744432 111 124679999999999 7899999999998666666
Q ss_pred HHHHHHHhccCCCChhHHHHHHhccC
Q 024619 223 ELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
....++.....+.+...+..+...|+
T Consensus 258 ~~~~~~~~~~~~~~~~~Q~aa~~aL~ 283 (393)
T COG0436 258 ALRKLKSYLTSCAPTPAQYAAIAALN 283 (393)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHhc
Confidence 66666666665666555555444444
No 49
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=212.03 Aligned_cols=203 Identities=25% Similarity=0.309 Sum_probs=162.8
Q ss_pred CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCC
Q 024619 23 YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGE 94 (265)
Q Consensus 23 ~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~ 94 (265)
+...++|.+....+.. .+....-++|++. |.| +++.|++.+++++|. ++.+++|.|+ +++. +++.++++||
T Consensus 40 fp~~~~P~fv~ea~~~-~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GD 118 (420)
T KOG0257|consen 40 FPDFPPPKFVTEAAKN-AAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGD 118 (420)
T ss_pred CCCCCCcHHHHHHHHH-HhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCC
Confidence 3444566655544332 2223356889999 998 599999999998864 4678888887 9986 9999999999
Q ss_pred EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------------CHHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619 95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---I 158 (265)
Q Consensus 95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l 158 (265)
+|++.+|.|++|. ...+..|.+++.++.. |+++++.++.++|++|++|+||||||.+.+ |
T Consensus 119 eVii~eP~fd~Y~----~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeL 194 (420)
T KOG0257|consen 119 EVIVFEPFFDCYI----PQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREEL 194 (420)
T ss_pred EEEEecCcchhhh----hHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHH
Confidence 9999999999997 5668889998888743 899999999999999999999999999964 8
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCC---------cCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVL---------SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 229 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~---------~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~ 229 (265)
++|+++|++||+++|.||+|..-.+ ..|.-+++.+.++|++|+| |..|+|.||+++ ++.+......++.
T Consensus 195 e~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf-~~TGWrlGW~ig-p~~L~~~~~~vh~ 272 (420)
T KOG0257|consen 195 ERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTF-GVTGWRLGWAIG-PKHLYSALFPVHQ 272 (420)
T ss_pred HHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecccccee-eeeeeeeeeeec-hHHhhhhHHHHhh
Confidence 9999999999999999999863222 2366667899999999999 789999999999 4455555555555
Q ss_pred hcc
Q 024619 230 AEG 232 (265)
Q Consensus 230 ~~~ 232 (265)
...
T Consensus 273 ~~~ 275 (420)
T KOG0257|consen 273 NFV 275 (420)
T ss_pred ccc
Confidence 433
No 50
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=4.5e-27 Score=202.88 Aligned_cols=241 Identities=23% Similarity=0.207 Sum_probs=183.8
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA 85 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~ 85 (265)
..++++|+ +|||+|+..+|.+..+.....+.. ..+..-+|. |+ +...+||+.+++++|.+..++++||..|. .+
T Consensus 38 ~~~~~nf~-SNdYLGLa~~~~~~~a~~~~~~~~-g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~ 115 (388)
T COG0156 38 GRKVLNFC-SNDYLGLASHPELIEAAKAAIRRY-GVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGL 115 (388)
T ss_pred CceeEeee-ccCcccccCCHHHHHHHHHHHHHh-CCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHH
Confidence 36799999 999999999999777653332211 223334553 66 57999999999999999999999999776 68
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccccHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQICDIR 159 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~ 159 (265)
+.++++++|.|+.+...|.+.. +-++..+.+++...+.|++++++.+.+ +.++|++++..++.|.+.||+
T Consensus 116 i~~l~~~~dli~~D~lnHASii----dG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~ 191 (388)
T COG0156 116 LSALLKKGDLIFSDELNHASII----DGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLP 191 (388)
T ss_pred HHHhcCCCcEEEEechhhhhHH----HHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHH
Confidence 8899999999999999998876 555678889999999999999998864 357899999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCcCCCCCcCC---------C-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH--
Q 024619 160 KIAEMAHAHGALLLVDNSIMSPVLSRP---------L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-- 227 (265)
Q Consensus 160 ~i~~~a~~~~~~li~D~~~~~~~~~~~---------~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~-- 227 (265)
+|++++++|++++++||+|+.|.++.. . ..+.||+++|++|.+++. +|++.++...+ +.+...
T Consensus 192 ~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~----Gg~v~g~~~~~-d~L~~~ar 266 (388)
T COG0156 192 ELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS----GGYIAGSAALI-DYLRNRAR 266 (388)
T ss_pred HHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc----CceeeCcHHHH-HHHHHhCC
Confidence 999999999999999999999988621 1 134589999999999643 58887766544 423222
Q ss_pred HHhccCCCChhHHHHHHhccC---chHhhHHHHhhch
Q 024619 228 QNAEGSGLAPFDCWICLRGVK---TMALRVEKQQVCF 261 (265)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~ 261 (265)
.......++|..+......++ +...+..+++++.
T Consensus 267 ~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~ 303 (388)
T COG0156 267 PFIFSTALPPAVAAAALAALRILEEGPERRERLQELA 303 (388)
T ss_pred ceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 224556777776555444444 3345555555544
No 51
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.95 E-value=6.6e-26 Score=200.81 Aligned_cols=187 Identities=22% Similarity=0.236 Sum_probs=143.7
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++++++|.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 71 ~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~----~~~~~~ 146 (405)
T PRK06207 71 VQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANR----KLVEFF 146 (405)
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHH----HHHHHc
Confidence 4578876 776 5999999999998742 456666664 8886 67778999999999999999886 555777
Q ss_pred CeEEEeecCC----------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619 118 GVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS 184 (265)
Q Consensus 118 g~~~~~~~~~----------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~ 184 (265)
|.+++.++++ |++++++++.+++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+...+.
T Consensus 147 g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~ 226 (405)
T PRK06207 147 EGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYD 226 (405)
T ss_pred CCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 8888877653 789999988888999999999999999976 788999999999999999999854321
Q ss_pred -----CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChh
Q 024619 185 -----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF 238 (265)
Q Consensus 185 -----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (265)
.. ...+..+++.||||.+ +.+|+|+||++.+++.+ +.....+.......+..
T Consensus 227 ~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~~~l~-~~~~~~~~~~~~~~~~~ 287 (405)
T PRK06207 227 GTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGSPAII-DRMEKLQAIVSLRAAGY 287 (405)
T ss_pred CCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcCHHHH-HHHHHHHhHhccCCCHH
Confidence 11 1234569999999999 66789999998776544 44444444333333433
No 52
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.5e-25 Score=198.25 Aligned_cols=196 Identities=16% Similarity=0.190 Sum_probs=147.3
Q ss_pred CCccCCCCCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRSGNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
.+.|+..|.+ +++++++++.+.+|. ++.+++++|+ +++. ++..++++||.|++++|+|+.+. ..++..|
T Consensus 63 ~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~----~~~~~~G 138 (399)
T PRK07681 63 SYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYE----TGIQMAG 138 (399)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchH----HHHHhcC
Confidence 4566655776 589999999887653 2466677775 8886 66778999999999999999997 5557789
Q ss_pred eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
++++.++++ |++++++++.+++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+...+.
T Consensus 139 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~ 218 (399)
T PRK07681 139 ATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP 218 (399)
T ss_pred CEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCC
Confidence 999988753 678898888788999999999999999977 788999999999999999999744321
Q ss_pred -CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 185 -RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 185 -~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
... ..+.++++.||||.+ |.+|+|+||++.+++.+ +.+...+.......+...+..+...+
T Consensus 219 ~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~~~l~-~~~~~~~~~~~~~~s~~~q~~~~~~l 284 (399)
T PRK07681 219 ISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGNEEIV-RALTQFKSNTDYGVFLPIQKAACAAL 284 (399)
T ss_pred CChhhCCCCcccEEEEeeccccc-CCccceeEEEecCHHHH-HHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 111 124579999999999 77899999998766544 44444444334445544444433333
No 53
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.4e-25 Score=198.14 Aligned_cols=208 Identities=15% Similarity=0.208 Sum_probs=150.5
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA 84 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~ 84 (265)
.+++|+ .++.....++..+.+..... .....+.|++. |.+ +++++++++.+.+|. ++.+++++|+ +++.
T Consensus 36 ~~i~l~-~g~p~~~~p~~~~~~~~~~~---~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~ 111 (394)
T PRK05942 36 DLIDLG-MGNPDGAAPQPVIEAAIAAL---ADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLT 111 (394)
T ss_pred CeEEcC-CCCCCCCCCHHHHHHHHHHH---hCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHH
Confidence 478998 44444432222333321111 11234678877 876 599999999887663 2346666665 8886
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
++..++++||+|++++|+|+.+.. .++..|++++.++.+ |++++++.+.+++++|++++|+||||.+.
T Consensus 112 ~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~ 187 (394)
T PRK05942 112 HLALAYVNPGDVVLVPSPAYPAHFR----GPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATA 187 (394)
T ss_pred HHHHHhCCCCCEEEEcCCCCcchHH----HHHHcCCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcC
Confidence 667789999999999999999863 335678888888653 68899888888999999999999999998
Q ss_pred c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC--C--CCCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619 157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 224 (265)
Q Consensus 157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~--~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~ 224 (265)
+ +++|+++|+++|+++|+||+|+...+. .. . ..+.++++.||||.+ |.+|+|+|+++.+++.+ +.+
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~~~l~-~~l 265 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGNRHII-QGL 265 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhcc-CChhhheeeeecCHHHH-HHH
Confidence 6 789999999999999999998743321 11 1 123568899999999 67899999998876544 444
Q ss_pred HHHHH
Q 024619 225 YFLQN 229 (265)
Q Consensus 225 ~~~~~ 229 (265)
.....
T Consensus 266 ~~~~~ 270 (394)
T PRK05942 266 RTLKT 270 (394)
T ss_pred HHHHh
Confidence 44443
No 54
>PRK07324 transaminase; Validated
Probab=99.94 E-value=8.3e-26 Score=198.13 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=141.7
Q ss_pred CCCccCCC-CChh-HHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619 45 GPYDYTRS-GNPT-RDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV 121 (265)
Q Consensus 45 ~~~~y~~~-g~~~-~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~ 121 (265)
....|++. |.+. ++++++++.. ...+++++++++++++. ++..++++||+|+++.|+|+.+. ..++..|.++
T Consensus 54 ~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v 128 (373)
T PRK07324 54 KKLTYGWIEGSPEFKEAVASLYQN-VKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY----DIPESLGAEV 128 (373)
T ss_pred CCccCCCCCCCHHHHHHHHHHhcC-CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEE
Confidence 45678877 7763 5555554432 12334544444458886 77788999999999999998886 5557788899
Q ss_pred EeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCC
Q 024619 122 KRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RPL 187 (265)
Q Consensus 122 ~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~ 187 (265)
+.++++ |++++++.+.+++++|++++|+||||.+.+ +++|+++|++||+++|+||+|+.-... ...
T Consensus 129 ~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~ 208 (373)
T PRK07324 129 DYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA 208 (373)
T ss_pred EEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence 888752 789999888889999999999999999987 899999999999999999999743322 111
Q ss_pred -CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 188 -~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
..+..+++.|+||.+ |.+|+|.||+++++ .+.+.....+.......+...+..+...+
T Consensus 209 ~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~~-~li~~~~~~~~~~~~~~~~~~q~~a~~~l 267 (373)
T PRK07324 209 DLYEKGISTNSMSKTY-SLPGIRVGWIAANE-EVIDILRKYRDYTMICAGVFDDMLASLAL 267 (373)
T ss_pred hccCCEEEEecchhhc-CCccceeEEEecCH-HHHHHHHHHhCcEEecCChHHHHHHHHHH
Confidence 124568999999999 67799999999865 44454555554433444444444443334
No 55
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.6e-25 Score=198.28 Aligned_cols=217 Identities=16% Similarity=0.182 Sum_probs=155.2
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCC-----ceEEecchH-H
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKAD-----RALCFTSGM-A 81 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~-~ 81 (265)
++..+++|+.....++ ++|.+....... ........|+..|.+ +++++++++.+.+|.+ +.|++++|+ +
T Consensus 42 ~~~~~i~L~~g~p~~~--~~~~~~~~l~~~--~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~ 117 (410)
T PRK06290 42 PDMELIDMGVGEPDEM--ADESVVEVLCEE--AKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKP 117 (410)
T ss_pred CCCCeEEcCCCCCCCC--CCHHHHHHHHHH--HhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHH
Confidence 3456889983333333 233333221111 111123457766776 5999999998876633 367788886 8
Q ss_pred HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcc
Q 024619 82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQ 153 (265)
Q Consensus 82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G 153 (265)
++. ++..++++||.|++++|+|+.+. ..++..|.+++.++++ |++++++.+.+++++|++++|+||||
T Consensus 118 al~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG 193 (410)
T PRK06290 118 ALAMLPSCFINPGDVTLMTVPGYPVTG----THTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTG 193 (410)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCC
Confidence 886 66778999999999999999986 5556789999888753 68888888888899999999999999
Q ss_pred cccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619 154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 154 ~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
.+.+ +++|+++|+++|++||+||+|+...+. . ....+.++++.||||.+ |.+|+|+||++.+++.+ .
T Consensus 194 ~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~~~l~-~ 271 (410)
T PRK06290 194 AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGNELIV-K 271 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeCHHHH-H
Confidence 9987 688999999999999999999754321 1 11124679999999999 67899999999876544 4
Q ss_pred HHHHHHHhccCCC
Q 024619 223 ELYFLQNAEGSGL 235 (265)
Q Consensus 223 ~~~~~~~~~~~~~ 235 (265)
.+...+.......
T Consensus 272 ~l~~~~~~~~~~~ 284 (410)
T PRK06290 272 AFATVKDNNDSGQ 284 (410)
T ss_pred HHHHHHhccccCC
Confidence 3444443333333
No 56
>PLN00175 aminotransferase family protein; Provisional
Probab=99.94 E-value=2.2e-25 Score=197.77 Aligned_cols=196 Identities=18% Similarity=0.238 Sum_probs=150.1
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+.+|.+ +.+++++|+ +++. ++..++++||+|++++|.|+.+. ..++..
T Consensus 84 ~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~ 159 (413)
T PLN00175 84 KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE----ATLSMA 159 (413)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHc
Confidence 4678888 887 5999999999887642 346666664 8886 67778999999999999999886 445678
Q ss_pred CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---
Q 024619 118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--- 185 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--- 185 (265)
|.+++.++++ |++++++.+.+++++|++++|+||||.+.+ +++|+++|++|++++|+||+|....+..
T Consensus 160 g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 239 (413)
T PLN00175 160 GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHI 239 (413)
T ss_pred CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCccc
Confidence 8898888753 688999998888999999999999999974 7889999999999999999997544321
Q ss_pred -----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 186 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 186 -----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
....+..|+++||||.+ +.+|+|+||++++++.+.. ............+...+..+.+.|
T Consensus 240 s~~~~~~~~~~vi~i~SfSK~~-~~~G~RiG~~v~~~~l~~~-l~~~~~~~~~~~s~~~Q~a~~~~l 304 (413)
T PLN00175 240 SMASLPGMYERTVTMNSLGKTF-SLTGWKIGWAIAPPHLTWG-VRQAHSFLTFATATPMQWAAVAAL 304 (413)
T ss_pred ChhhCCCCcCcEEEEecchhhc-cCcchheeeeEeCHHHHHH-HHHHHhhccCCCCHHHHHHHHHHH
Confidence 11135679999999999 6688999999988765543 444444344455555555444444
No 57
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.94 E-value=4.6e-25 Score=194.26 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=143.9
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+.+|. ++.+++++|+ +++. ++..++++||.|++++|+|+.+. ..++..
T Consensus 60 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~ 135 (383)
T TIGR03540 60 NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYR----IGTLFA 135 (383)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchH----HHHHhc
Confidence 4568877 775 699999999887665 2356676665 8886 66778999999999999999986 445678
Q ss_pred CeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619 118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 118 g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--- 184 (265)
|.+++.++.+ |++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 136 G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~ 215 (383)
T TIGR03540 136 GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK 215 (383)
T ss_pred CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence 8898888753 678888888888999999999999999987 689999999999999999999743221
Q ss_pred --C--CC--CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 --R--PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 --~--~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
. .. ..+.++++.||||.+ |.+|+|+||++.+++.+ +.+...........+...+..
T Consensus 216 ~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~ 277 (383)
T TIGR03540 216 APSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNADLI-AGLGKVKTNVDSGVFQAIQYA 277 (383)
T ss_pred CcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHHHH-HHHHHHHHhcccCCChHHHHH
Confidence 1 11 124568999999999 77899999998776544 444444433333334333333
No 58
>PLN02187 rooty/superroot1
Probab=99.94 E-value=5.9e-25 Score=197.27 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=146.3
Q ss_pred CcceeEeeccCCCCC-CCC-CCCC-eeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecch
Q 024619 8 GVSTLLMNFSNEFDP-YGA-LSTP-LYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG 79 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~-~g~-~~~~-~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g 79 (265)
+.+..+++|+ ..|. +++ ..+| ..... +.. .......+.|++. |.+ +++++++++.+.++. + +.+++++|
T Consensus 63 ~~~~~vi~l~-~Gdp~~~p~~~~~~~~~~~-~~~-~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G 139 (462)
T PLN02187 63 DVNKTILPLG-HGDPSVYPCFRTCIEAEDA-VVD-VLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAG 139 (462)
T ss_pred CCCCCeEECC-CCCCCCCCCCCCCHHHHHH-HHH-HHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence 4456799998 4433 222 2222 11111 111 1112234678777 775 588888888776543 2 45555555
Q ss_pred -HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCC
Q 024619 80 -MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTN 150 (265)
Q Consensus 80 -~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~n 150 (265)
++++. ++..++++||.|++++|+|+.+. ..++..|.+++.+++ .|++++++++.++++++++++|+|
T Consensus 140 ~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~----~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~N 215 (462)
T PLN02187 140 CNQGIEIVFESLARPNANILLPRPGFPHYD----ARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNN 215 (462)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCCccHH----HHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCC
Confidence 59996 67778999999999999999986 445678888888864 268999998888899999999999
Q ss_pred Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC----C-C---CCCccEEEeccccccccCCCceeeEEEeec
Q 024619 151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR----P-L---ELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 151 p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~----~-~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
|||.+.+ +++|+++|+++|++||+||+|+...+.. + . .....++++||||.| +.+|+|+||+++.+
T Consensus 216 PTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~ 292 (462)
T PLN02187 216 PCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALND 292 (462)
T ss_pred CCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc-CCccceeEEEEecC
Confidence 9999976 7899999999999999999998643321 1 1 112479999999999 67899999999854
No 59
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.94 E-value=1.3e-25 Score=195.16 Aligned_cols=200 Identities=22% Similarity=0.251 Sum_probs=153.8
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-C-ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-G-NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTH 88 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g-~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~ 88 (265)
.+++|+ +++|+|..++|.+............+....|... | .+..+++++.+++++|.++.+++++|++++. ++..
T Consensus 2 ~~~~~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~ 80 (349)
T cd06454 2 KVLNFC-SNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLST 80 (349)
T ss_pred Cceecc-cCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHH
Confidence 478999 9999999988877766433221111111122222 4 3579999999999999988899999998875 6677
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-----CCceEEEEecCCCCccccccHHHHHH
Q 024619 89 LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 89 ~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
++++||+|++++|.|+++... ++..|++++.++..|.+++++.+. ++++++++++++||+|...|+++|++
T Consensus 81 ~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~ 156 (349)
T cd06454 81 LAGKGDLIISDSLNHASIIDG----IRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVD 156 (349)
T ss_pred hcCCCCEEEEehhhhHHHHHH----HHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHH
Confidence 889999999999999887633 456788998888778888888775 35788899999999999999999999
Q ss_pred HHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 164 MAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 164 ~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
+|+++|+++|+|++|+.+.+.. ....+.|++++|++|+++. + +|+++.+++..
T Consensus 157 ~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~i~~~~~~~ 218 (349)
T cd06454 157 LAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-V---GGYIAGSKELI 218 (349)
T ss_pred HHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-c---CCEEECCHHHH
Confidence 9999999999999998665421 1234679999999999954 3 47887765544
No 60
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.94 E-value=1.6e-25 Score=197.68 Aligned_cols=201 Identities=16% Similarity=0.191 Sum_probs=154.3
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC----CC-hhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS----GN-PTRDALESLLAKLDKADRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~----g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al 83 (265)
.+..+|+|+ +++|+|..++|.+.......... ..+.|+.. |. +...++++.+++++|.++++++++|++|+
T Consensus 36 ~g~~~i~~~-~~~~lg~~~~~~v~~~~~~~~~~---~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~ 111 (393)
T TIGR01822 36 DGREVLNFC-ANNYLGLSSHPDLIQAAKDALDE---HGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDAN 111 (393)
T ss_pred CCceEEEee-CCCccccCCCHHHHHHHHHHHHH---hCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHH
Confidence 345789999 99999999888766654322111 11223222 53 56899999999999999999999999888
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~ 156 (265)
. ++..++++||+|+++++.|+++...+ +..+.+.+.+...|++++++.+.+ ++++|++++++||||.+.
T Consensus 112 ~~~~~~l~~~gd~vi~~~~~~~s~~~~~----~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~ 187 (393)
T TIGR01822 112 GGLFETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA 187 (393)
T ss_pred HHHHHHhCCCCCEEEEeccccHHHHHHH----HhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC
Confidence 5 66778999999999999999887544 333444455556788888888763 788999999999999999
Q ss_pred cHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 157 DIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
|+++|+++|++||+++++||+|+.+..+. ....+.|++++|+||+++|+ ++|+++++++.+
T Consensus 188 ~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~---r~G~~~~~~~~~ 257 (393)
T TIGR01822 188 PLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA---SGGFTTARKEVV 257 (393)
T ss_pred CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC---CcEEEEeCHHHH
Confidence 99999999999999999999998766531 11225789999999998543 579998776544
No 61
>PLN02483 serine palmitoyltransferase
Probab=99.94 E-value=1.8e-25 Score=201.54 Aligned_cols=203 Identities=17% Similarity=0.234 Sum_probs=151.9
Q ss_pred CcceeEeeccCCCCCCCCCCC-CeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619 8 GVSTLLMNFSNEFDPYGALST-PLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL 83 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al 83 (265)
+...+++||+ |+||+|...+ +............. .....-++. |. +..+++++.+++++|.++.+++++|..+.
T Consensus 97 ~~~~~~~n~~-s~~YLgl~~~~~~~~~~~~~ai~~~-g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an 174 (489)
T PLN02483 97 TKTRRCLNLG-SYNYLGFAAADEYCTPRVIESLKKY-SASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATN 174 (489)
T ss_pred CCCceEEEee-cCCccCcCCCCHHHHHHHHHHHHHh-CCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHH
Confidence 4567899999 9999999864 33322221111111 112223442 54 57999999999999999999999998665
Q ss_pred -HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-------CCc-----e-EEEEecCC
Q 024619 84 -AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT-----K-LVWVESPT 149 (265)
Q Consensus 84 -~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-------~~~-----~-~i~~~~~~ 149 (265)
.++..++++||.|+++++.|+++. ..++..|++++.++..|.+++++.++ +++ + +|++++..
T Consensus 175 ~~~i~al~~~Gd~Vi~d~~~h~s~~----~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~ 250 (489)
T PLN02483 175 STIIPALIGKGGLIISDSLNHNSIV----NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY 250 (489)
T ss_pred HHHHHHhCCCCCEEEEcchhhHHHH----HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence 467788999999999999999986 44577899999999888777766543 222 4 56667788
Q ss_pred CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------C-CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------P-LELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 150 np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~-~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
|++|.+.++++|+++|+++|+++|+||+|+.+..+. . ...+.||+++|+||+++ +. +|+++++++.
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~---GG~i~~~~~l 326 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SC---GGYIAGSKEL 326 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cC---ceEEEcCHHH
Confidence 999999999999999999999999999998665421 1 12357999999999994 44 4899877654
Q ss_pred H
Q 024619 220 L 220 (265)
Q Consensus 220 ~ 220 (265)
+
T Consensus 327 i 327 (489)
T PLN02483 327 I 327 (489)
T ss_pred H
Confidence 4
No 62
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.94 E-value=1.2e-24 Score=191.80 Aligned_cols=195 Identities=19% Similarity=0.249 Sum_probs=147.8
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
..|... |.+ +++++++++++++|. ++.+++++|+ +++. ++..++++||+|++++|+|..+. ..++..|
T Consensus 59 ~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~----~~~~~~g 134 (389)
T PRK05957 59 HKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHE----MAITMAG 134 (389)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHH----HHHHhcC
Confidence 567776 776 599999999999885 3466667665 8885 66777899999999999998886 3446789
Q ss_pred eEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----C
Q 024619 119 VVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R 185 (265)
Q Consensus 119 ~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~ 185 (265)
++++.++.+ |++++++.+++++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+. .
T Consensus 135 ~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~ 214 (389)
T PRK05957 135 CQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFS 214 (389)
T ss_pred CEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccC
Confidence 999888754 789999999888999999999999999987 889999999999999999998743322 1
Q ss_pred ----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 186 ----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 186 ----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
+...+..+++.|+||.+ |.+|+|.|+++++++.+ +.+...........+...+..+...+
T Consensus 215 ~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~l 278 (389)
T PRK05957 215 PGSIPGSGNHTISLYSLSKAY-GFASWRIGYMVIPIHLL-EAIKKIQDTILICPPVVSQYAALGAL 278 (389)
T ss_pred hhhCCCccCcEEEEecchhhc-cCccceeEEEecCHHHH-HHHHHHHhhcccCCCcHHHHHHHHHH
Confidence 11224679999999999 77899999999877544 43444443333334434444433333
No 63
>PRK08068 transaminase; Reviewed
Probab=99.93 E-value=9.5e-25 Score=192.59 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=148.8
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecch-HHHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSG-MAAL 83 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g-~~al 83 (265)
..+++|+ .++..... +|.+.... .. .........|++. |.+ +++++++++.+.+|. + + .+++++| ++++
T Consensus 32 ~~~i~l~-~~~p~~~~-~~~~~~~~-~~-~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l 107 (389)
T PRK08068 32 HDVINLG-QGNPDQPT-PEHIVEAL-QE-AAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL 107 (389)
T ss_pred CCeEEec-CCCCCCCC-CHHHHHHH-HH-HHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence 3579999 55543332 23332221 11 1111234578766 776 599999999877663 2 3 4555555 5887
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~ 155 (265)
. ++..++++||.|++++|+|+.+. ..++..|++++.++++ |++++++++.+++++|++++|+||||.+
T Consensus 108 ~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~ 183 (389)
T PRK08068 108 VELPQCLMNPGDTILVPDPGYPDYL----SGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAV 183 (389)
T ss_pred HHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCc
Confidence 5 67778999999999999999996 5557789999888753 5788888887889999999999999999
Q ss_pred cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619 156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223 (265)
Q Consensus 156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~ 223 (265)
.+ +++|+++|++++++||+||+|+...+. ... ..+..+++.||||.| |.+|+|.||++.+++.+ +.
T Consensus 184 ~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~l~-~~ 261 (389)
T PRK08068 184 ATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGNESVI-EA 261 (389)
T ss_pred CCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc-CCccceeEeEecCHHHH-HH
Confidence 76 478889999999999999999642211 101 123569999999999 67899999999776544 43
Q ss_pred HHHHH
Q 024619 224 LYFLQ 228 (265)
Q Consensus 224 ~~~~~ 228 (265)
+....
T Consensus 262 l~~~~ 266 (389)
T PRK08068 262 INLLQ 266 (389)
T ss_pred HHHHH
Confidence 33333
No 64
>PRK12414 putative aminotransferase; Provisional
Probab=99.93 E-value=4.8e-25 Score=194.12 Aligned_cols=196 Identities=18% Similarity=0.241 Sum_probs=147.4
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC-----ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++++++|.+ ++++++++++++. ++..++++||+|++++|+|..+. ..++..
T Consensus 59 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~ 134 (384)
T PRK12414 59 HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYA----PIVRLQ 134 (384)
T ss_pred CCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHc
Confidence 4678776 876 5999999999998863 3555555568886 67788999999999999998886 444567
Q ss_pred CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
|.+++.++.+ |++++++.+.+++++|++++|+||||.+. ++++|+++|+++|+++|+||+|....+.
T Consensus 135 g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~ 214 (384)
T PRK12414 135 GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARH 214 (384)
T ss_pred CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCc
Confidence 8888887753 68999998888899999999999999985 5788999999999999999999753321
Q ss_pred CCC-----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 185 RPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 185 ~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
.+. ..+..+++.||||.+ |.+|+|+||++++++.+.. +...........+...+..+.+.|
T Consensus 215 ~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRiG~~v~~~~l~~~-l~~~~~~~~~~~s~~~q~a~~~~l 280 (384)
T PRK12414 215 HSMARHRELAERSVIVSSFGKSY-HVTGWRVGYCLAPAELMDE-IRKVHQFMVFSADTPMQHAFAEAL 280 (384)
T ss_pred cCcccCcCccCcEEEEecccccc-cCccceEEEEecCHHHHHH-HHHHHhheecCCCcHHHHHHHHHh
Confidence 111 123579999999999 6789999999988765533 444443334444544444443433
No 65
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.93 E-value=7.7e-25 Score=193.13 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=137.2
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
.+.|++. |.+ +++++++++.+.+|. + + .+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 61 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~ 136 (388)
T PRK07366 61 THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHA----GGVYLA 136 (388)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHhc
Confidence 4568776 776 599999999887663 3 3 57777775 8886 66778999999999999999996 555778
Q ss_pred CeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619 118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 118 g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--- 184 (265)
|.+++.++++ |++++++.+.+++++|++++||||||.+.+ +++|+++|+++|++||+||+|....+.
T Consensus 137 g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~ 216 (388)
T PRK07366 137 GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV 216 (388)
T ss_pred CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC
Confidence 9999888753 567777777778999999999999999975 578888999999999999999744321
Q ss_pred ---CCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619 185 ---RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 229 (265)
Q Consensus 185 ---~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~ 229 (265)
.... ....++++||||.+ |.+|+|+||++++++.+ +.+...+.
T Consensus 217 ~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~li-~~l~~~~~ 266 (388)
T PRK07366 217 EPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGNAQLI-QALRQVKA 266 (388)
T ss_pred CCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCCHHHH-HHHHHHHh
Confidence 1111 12458899999999 67899999999876554 43433433
No 66
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.93 E-value=1.4e-24 Score=191.26 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=143.4
Q ss_pred CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
....|++. |.+ +++++++++.+.+|.. +.+++++| ++++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 58 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~ 133 (384)
T PRK06348 58 GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK----DQIEMV 133 (384)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHc
Confidence 34678877 776 5999999998765432 45555555 58886 67778999999999999999997 444566
Q ss_pred CeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--
Q 024619 118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-- 185 (265)
Q Consensus 118 g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~-- 185 (265)
|.+++.++. .|++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+...+..
T Consensus 134 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~ 213 (384)
T PRK06348 134 GGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDF 213 (384)
T ss_pred CCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCc
Confidence 778877763 3689999988888999999999999999975 7889999999999999999998543221
Q ss_pred -C---CC--CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619 186 -P---LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241 (265)
Q Consensus 186 -~---~~--~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265)
+ .. .+..+++.||||.+ +.+|+|+||++++++. .+.....+.......+...+.
T Consensus 214 ~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~v~~~~~-~~~~~~~~~~~~~~~~~~~q~ 273 (384)
T PRK06348 214 VPMATLAGMPERTITFGSFSKDF-AMTGWRIGYVIAPDYI-IETAKIINEGICFSAPTISQR 273 (384)
T ss_pred cchhhcCCCcCcEEEEecchhcc-CCccccceeeecCHHH-HHHHHHHHHhccCCCCHHHHH
Confidence 1 11 34679999999999 6678999999987654 444444444333444544433
No 67
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.93 E-value=1.5e-24 Score=191.76 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=157.3
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC-----ceEEecchH-H
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD-----RALCFTSGM-A 81 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~-----~~i~~~~g~-~ 81 (265)
+..+++|+ .++..-. +++.+.... ... . .....|++. |.+ +++++++++.+.+|.+ +.+++++|+ +
T Consensus 28 ~~~~i~l~-~~~p~~~-~~~~~~~~~-~~~-~--~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~ 101 (396)
T PRK09147 28 DLPPISLS-IGEPKHP-TPAFIKDAL-AAN-L--DGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSRE 101 (396)
T ss_pred CCCeEecC-CCCCCCC-CCHHHHHHH-HHH-h--hhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHH
Confidence 45788898 4443211 223332221 111 1 135678877 776 5999999998887732 367777775 8
Q ss_pred HHH-HHHHhcCC---CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCC
Q 024619 82 ALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTN 150 (265)
Q Consensus 82 al~-~~~~~~~~---g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~n 150 (265)
++. ++..++++ ||.|++++|+|+.+. ..++..|++++.++++ |++++++.+.++++++++++|+|
T Consensus 102 al~~~~~~l~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~N 177 (396)
T PRK09147 102 ALFAFAQTVIDRDGPGPLVVCPNPFYQIYE----GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGN 177 (396)
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCCCccchH----HHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCC
Confidence 886 67778999 899999999999886 5557789999998753 67888887777899999999999
Q ss_pred Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---C---------C---CCCccEEEeccccccccCCCceeeE
Q 024619 151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P---------L---ELGADIVMHSATKFIAGHSDVMAGV 212 (265)
Q Consensus 151 p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~---~---------~---~~~~di~~~s~sK~~~g~~g~~~G~ 212 (265)
|||.+.+ +++|+++|++|+++||+||+|+...+.. + . ..+..+++.||||.+ +.+|+|+||
T Consensus 178 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~ 256 (396)
T PRK09147 178 PTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRS-NVPGLRSGF 256 (396)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecccccc-CCccceeee
Confidence 9999974 7889999999999999999997543211 0 0 124569999999988 568899999
Q ss_pred EEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 213 LAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
++++++.+ +.....+......++...+..
T Consensus 257 ~~~~~~l~-~~~~~~~~~~~~~~~~~~q~a 285 (396)
T PRK09147 257 VAGDAALL-KKFLLYRTYHGCAMPPAVQAA 285 (396)
T ss_pred ecCCHHHH-HHHHHHhhhcccCCCHHHHHH
Confidence 99876544 434444433344455444433
No 68
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.93 E-value=1.9e-24 Score=190.38 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=143.3
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+.+|. ++.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 62 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~----~~~~~~ 137 (385)
T PRK09276 62 NHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYK----IGTIFA 137 (385)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChH----HHHHHc
Confidence 4568777 775 599999999877664 2357776665 8886 66778999999999999999986 455678
Q ss_pred CeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619 118 GVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 118 g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--- 184 (265)
|.+++.++.+ |++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|++||+||+|....+.
T Consensus 138 g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (385)
T PRK09276 138 GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYK 217 (385)
T ss_pred CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCC
Confidence 8888887752 578888888888999999999999999987 589999999999999999999743321
Q ss_pred --CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 --RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 --~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
... ..+.++++.||||.+ |.+|+|+||++++++.+ +.....+.......+...+..
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~ 279 (385)
T PRK09276 218 PPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNADLI-AGLGKVKSNVDSGVFQAIQEA 279 (385)
T ss_pred CCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHHHH-HHHHHHHhhccCCCCHHHHHH
Confidence 111 124579999999999 77899999999876544 444444443333344333333
No 69
>PRK07179 hypothetical protein; Provisional
Probab=99.93 E-value=6e-25 Score=194.93 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=157.8
Q ss_pred CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619 8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDKADRALCFTSGMAALA- 84 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~- 84 (265)
+++..+++|+ +|||+|...+|.+.................-+.. |.+...++++.+++++|.+.++++++|++|+.
T Consensus 51 ~~g~~~~~~~-~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~ 129 (407)
T PRK07179 51 TPGPDAIILQ-SNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVG 129 (407)
T ss_pred CCCCcEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence 4556789999 9999999999988776543322111111111111 44678999999999999998999999998885
Q ss_pred HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHH
Q 024619 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
++..+..+||.|+++.+.|.+... .++..|.+++.++..|++++++.+.+ ++++|++++++||+|.+.|+++|.+
T Consensus 130 ~l~~l~~~g~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~ 205 (407)
T PRK07179 130 LLQTIADPNTPVYIDFFAHMSLWE----GVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVD 205 (407)
T ss_pred HHHHhCCCCCEEEEECCcCHHHHH----HHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHH
Confidence 777888999999999998877753 33456788888888899999998875 5889999999999999999999999
Q ss_pred HHHHcCCEEEEeCCcCCCCCcC-------CC--CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 164 MAHAHGALLLVDNSIMSPVLSR-------PL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 164 ~a~~~~~~li~D~~~~~~~~~~-------~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+|+++|+++|+||+|+.+..+. .. ..+.|+++.|++|++++ ++|+++++++.
T Consensus 206 l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~----~~G~l~~~~~~ 266 (407)
T PRK07179 206 IAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG----RAGIITCPREL 266 (407)
T ss_pred HHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc----cCeEEEeCHHH
Confidence 9999999999999998765421 11 12468999999999953 36888887644
No 70
>PRK08912 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-24 Score=190.96 Aligned_cols=178 Identities=25% Similarity=0.306 Sum_probs=138.4
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---c-eEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---R-ALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+.+|.+ + .+++++| ++++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 56 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~ 131 (387)
T PRK08912 56 SNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYL----PLIRRA 131 (387)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHc
Confidence 4668887 876 5999999998876642 2 4555555 58886 67778899999999999999886 455778
Q ss_pred CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
|.+++.++.+ |++++++.+.+++++|++++|+||||.+.+ +++|+++|+++++++|+||+|+...+.
T Consensus 132 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~ 211 (387)
T PRK08912 132 GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRH 211 (387)
T ss_pred CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCC
Confidence 8888877653 679999988888999999999999999976 678999999999999999998643221
Q ss_pred ----CCC-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619 185 ----RPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 229 (265)
Q Consensus 185 ----~~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~ 229 (265)
... ..+.+++++|+||.+ |.+|+|.|+++++++.+.. +.....
T Consensus 212 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~~~~-l~~~~~ 259 (387)
T PRK08912 212 IPLMTLPGMRERTVKIGSAGKIF-SLTGWKVGFVCAAPPLLRV-LAKAHQ 259 (387)
T ss_pred cChhhCCCccCceEEEeechhhc-cCcCceeEEEecCHHHHHH-HHHHHh
Confidence 111 135689999999999 7789999999987755433 333333
No 71
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.93 E-value=6.7e-25 Score=196.44 Aligned_cols=187 Identities=21% Similarity=0.284 Sum_probs=146.9
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|.+. |.+ +++++.+++....|.. +.|++|+|+ +|+. +...+++|||.|++++|+|+... .+++..|
T Consensus 125 ~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~----~~~~~~g 200 (459)
T COG1167 125 ALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL----QALEALG 200 (459)
T ss_pred hhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH----HHHHHcC
Confidence 4678885 885 5999999999665543 477777776 8997 66778999999999999998887 5667889
Q ss_pred eEEEeecCC----CHHHHHhhcCC-CceEEEE-ecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc-----
Q 024619 119 VVVKRVNTC----DLDEVASAIGP-WTKLVWV-ESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS----- 184 (265)
Q Consensus 119 ~~~~~~~~~----d~~~l~~~~~~-~~~~i~~-~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~----- 184 (265)
.+++.++++ |+|++++.+.+ +++++++ ++.+||||..+++ ++|+++|++||++||+||.|+...+.
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~ 280 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP 280 (459)
T ss_pred CcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC
Confidence 999999876 79999999874 6888766 6688999999875 78999999999999999999854442
Q ss_pred ---CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhH
Q 024619 185 ---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD 239 (265)
Q Consensus 185 ---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (265)
.....+.+|+++||||.+ + ||+|+||+++++..+ +.+...........+...
T Consensus 281 ~l~~ld~~~rViy~gSFSK~l-~-PglRlG~vv~p~~~~-~~~~~~k~~~~~~~s~~~ 335 (459)
T COG1167 281 PLKALDAPGRVIYLGSFSKTL-A-PGLRLGYVVAPPELI-EKLLRLKQAADLGPSSLS 335 (459)
T ss_pred ChHhhCCCCCEEEEeeehhhc-c-cccceeeeeCCHHHH-HHHHHHHHHhcCCCChHH
Confidence 112237899999999999 4 579999999887555 444444444444455444
No 72
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.93 E-value=3.9e-24 Score=186.15 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=142.6
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecchH-HHHH-HHHHhcCCC---CEEEEcCCCCCChHHHHHhhc
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSGM-AALA-AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVT 114 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g~-~al~-~~~~~~~~g---~~viv~~~~~~~~~~~~~~~~ 114 (265)
...|+.. |.+ +++++++++.+.+|. + + .+++++|+ +++. ++..++++| |+|+++.|+|+.+. ..+
T Consensus 29 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~----~~~ 104 (350)
T TIGR03537 29 VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYE----RGA 104 (350)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchH----HHH
Confidence 4568776 775 699999999888773 2 3 67777776 8886 667788887 69999999999997 555
Q ss_pred CCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619 115 PKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS 184 (265)
Q Consensus 115 ~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~ 184 (265)
+..|++++.++.+ |++++++++.++++++++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 105 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~ 184 (350)
T TIGR03537 105 LFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG 184 (350)
T ss_pred HhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC
Confidence 7789999988753 688999988889999999999999999987 899999999999999999999754332
Q ss_pred C----C--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC
Q 024619 185 R----P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 236 (265)
Q Consensus 185 ~----~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 236 (265)
. . .+.+..+++.|+||.+ |.+|+|+|+++.+++.. +.+...........+
T Consensus 185 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~~ 240 (350)
T TIGR03537 185 EPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGDEKLI-SFLRKLRANFGVASP 240 (350)
T ss_pred CCCCchhhcCcCCEEEEeeccccc-CCccccceeeecCHHHH-HHHHHHHHhhccCCC
Confidence 1 1 1234679999999999 66799999998765444 444444433333333
No 73
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.93 E-value=6.8e-25 Score=193.20 Aligned_cols=197 Identities=16% Similarity=0.212 Sum_probs=148.1
Q ss_pred eeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHh
Q 024619 14 MNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL 89 (265)
Q Consensus 14 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~ 89 (265)
++|+ +|||+|+..+|.++......-+.... +.+-++. |+ ....++++.+++++|.++.+++++|+.+. .++..+
T Consensus 1 ~~f~-s~dyLgl~~~~~~~~~~~~a~~~~g~-~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l 78 (392)
T PLN03227 1 LNFA-THDFLSTSSSPTLRQTALESLSHYGC-GSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAF 78 (392)
T ss_pred CCCc-CcCccCCCCCHHHHHHHHHHHHHhCC-CCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHh
Confidence 5899 99999999999887765333222211 1111222 33 46999999999999999999999998655 678889
Q ss_pred cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHh---hcC-----------CCceEEEEecCCCCcccc
Q 024619 90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS---AIG-----------PWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~---~~~-----------~~~~~i~~~~~~np~G~~ 155 (265)
+++||.|+++++.|++....+ ...+.+++.++..|.+++++ .+. +++++|++++++||+|.+
T Consensus 79 ~~~GD~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i 154 (392)
T PLN03227 79 AKRGDLLVVDRGVNEALLVGV----SLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTL 154 (392)
T ss_pred CCCCCEEEEeccccHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcc
Confidence 999999999999999886443 33445777777665554443 332 357899999999999999
Q ss_pred ccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-----------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 156 CDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 156 ~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-----------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.|+++|.++|++||+++|+||+|+.+..+.. -..+.|+++.|++|.+ |+. +|+++++++.+
T Consensus 155 ~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~---gg~v~~~~~~~ 226 (392)
T PLN03227 155 APLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSV---GGMTVGSEEVV 226 (392)
T ss_pred cCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hcc---CcEEecCHHHH
Confidence 9999999999999999999999986655321 1235699999999987 443 58887665443
No 74
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.93 E-value=2.7e-24 Score=189.23 Aligned_cols=190 Identities=26% Similarity=0.282 Sum_probs=142.8
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhC--CC--ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDK--AD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g--~~--~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+ +++++++++.+.+| .+ ++++++++++++. ++..++++||.|++++|+|+.+. ..++..|
T Consensus 54 ~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~g 129 (382)
T PRK06108 54 ETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLV----AAPKILG 129 (382)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchH----HHHHHCC
Confidence 3458877 876 59999999998877 33 3444445568886 66778899999999999999886 4456788
Q ss_pred eEEEeecCC--------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619 119 VVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 119 ~~~~~~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--- 184 (265)
++++.++.+ |++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 130 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~ 209 (382)
T PRK06108 130 ARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGG 209 (382)
T ss_pred CEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCC
Confidence 998888753 678999888888999999999999999874 688999999999999999998754332
Q ss_pred ---C---CC-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619 185 ---R---PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241 (265)
Q Consensus 185 ---~---~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265)
. .. ..+.++++.|+||.+ |.+|+|.|+++++++.+.. +...........+...+.
T Consensus 210 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~ 271 (382)
T PRK06108 210 RAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPPALGQV-LEKLIEYNTSCVAQFVQR 271 (382)
T ss_pred CCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCHHHHHH-HHHHHHhcccCCChHHHH
Confidence 0 01 124579999999999 6678999999987765543 333333333344444433
No 75
>PRK08960 hypothetical protein; Provisional
Probab=99.93 E-value=4.5e-24 Score=188.18 Aligned_cols=191 Identities=21% Similarity=0.206 Sum_probs=139.8
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|.+. |.+ +++.+++++.+.+|. + +.+++++| ++++. ++..++++||+|++++|+|+.+... ++..|
T Consensus 62 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g 137 (387)
T PRK08960 62 HTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHF----LRLVE 137 (387)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHH----HHhcC
Confidence 3567666 776 588888888876553 2 45555555 59986 6677789999999999999999743 34567
Q ss_pred eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.+++ .|++++++.+.++++++++++|+||||.+.+ +++|+++|+++|+++|+||+|..-.+.
T Consensus 138 ~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~ 217 (387)
T PRK08960 138 GAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA 217 (387)
T ss_pred CeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 77776664 2678999888888999999999999999976 567888899999999999998743322
Q ss_pred CCCC-CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 RPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 ~~~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
.... .+..++++|+||.+ |.+|+|+||++++++.+ +.+...........+...+..
T Consensus 218 ~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~~~~~~~s~~~q~a 274 (387)
T PRK08960 218 SVLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPPAAV-PELEKLAQNLYISASTPAQHA 274 (387)
T ss_pred ChhhccCCEEEEeeccccc-CCcccEEEEEEcCHHHH-HHHHHHHhhhccCCCHHHHHH
Confidence 1111 23568999999999 67899999999887554 434444443344445444333
No 76
>PLN02368 alanine transaminase
Probab=99.93 E-value=3.8e-24 Score=188.79 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=144.9
Q ss_pred CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCC
Q 024619 45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPK 116 (265)
Q Consensus 45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~ 116 (265)
....|++. |.+ +++++.+++.+.+|.+ +.|++++|+ +++. ++..++ ++||+|++++|+|+.+. ..++.
T Consensus 99 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~----~~~~~ 174 (407)
T PLN02368 99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS----ATISL 174 (407)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH----HHHHH
Confidence 35678887 875 6999999998887642 466677765 8886 666676 79999999999999997 45567
Q ss_pred CCeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619 117 TGVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS 180 (265)
Q Consensus 117 ~g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~ 180 (265)
.|.+++.++++ |++++++.+.+ +++++++++|+||||.+.+ +++|+++|++||++||+||+|..
T Consensus 175 ~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~ 254 (407)
T PLN02368 175 LGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQ 254 (407)
T ss_pred cCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 88888888642 68889888753 6899999999999999975 68899999999999999999975
Q ss_pred CCCcC-----C-------C-----CCCccEEEeccccccccCCCceeeEEEe---echhHHHHHHHHHHhccCCCChhHH
Q 024619 181 PVLSR-----P-------L-----ELGADIVMHSATKFIAGHSDVMAGVLAV---KGERLAKELYFLQNAEGSGLAPFDC 240 (265)
Q Consensus 181 ~~~~~-----~-------~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (265)
..+.. + . ..+..+++.||||.+.+.+|+|+||++. +.+.+ +.....+.. ....+...+
T Consensus 255 l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li-~~~~~~~~~-~~~~~~~~Q 332 (407)
T PLN02368 255 NIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV-EEIYKVASI-ALSPNVSGQ 332 (407)
T ss_pred cccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHH-HHHHHHhcc-cCCCCcHHH
Confidence 44311 1 0 1236799999999986678999999985 44443 433333322 233444444
Q ss_pred HHHHhcc
Q 024619 241 WICLRGV 247 (265)
Q Consensus 241 ~~~~~~l 247 (265)
..+...+
T Consensus 333 ~aa~~~l 339 (407)
T PLN02368 333 IFMGLMV 339 (407)
T ss_pred HHHHHHh
Confidence 4444444
No 77
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.93 E-value=5.9e-24 Score=188.37 Aligned_cols=203 Identities=17% Similarity=0.189 Sum_probs=145.7
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---c-eEEecchH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---R-ALCFTSGM-AAL 83 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~i~~~~g~-~al 83 (265)
..+++|+ ..+.....++..+.+.... ......+.|++. |.+ +++++++++.+.+|.+ + .+++++|+ +++
T Consensus 33 ~~~~~l~-~g~p~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al 108 (403)
T PRK08636 33 EDIIDFS-MGNPDGPTPQHIIDKLCES---AQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGY 108 (403)
T ss_pred CCEEEcC-CcCCCCCCCHHHHHHHHHH---hcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHH
Confidence 4578888 4444444333333332211 111235778887 886 5999999998887642 3 57777776 888
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHH----HHHhhcC---CCceEEEEecC
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLD----EVASAIG---PWTKLVWVESP 148 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~----~l~~~~~---~~~~~i~~~~~ 148 (265)
. ++..++++||.|++++|+|+.+. ..++..|.+++.++.+ |++ .++++++ ++++++++++|
T Consensus 109 ~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P 184 (403)
T PRK08636 109 VHLVQAITNPGDVAIVPDPAYPIHS----QAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFP 184 (403)
T ss_pred HHHHHHhCCCCCEEEEcCCCCcchH----HHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCC
Confidence 6 67788999999999999999996 4557788998887652 344 3455553 57899999999
Q ss_pred CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC----CCccEEEeccccccccCCCceeeEEEee
Q 024619 149 TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE----LGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 149 ~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
+||||.+++ +++|+++|++|+++||+||+|+...+. .... .+..++++|+||.+ |.+|+|+||++.+
T Consensus 185 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~~ 263 (403)
T PRK08636 185 HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVGN 263 (403)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeCC
Confidence 999999976 588999999999999999999743321 1111 13457789999999 6688999999887
Q ss_pred chhHHH
Q 024619 217 GERLAK 222 (265)
Q Consensus 217 ~~~~~~ 222 (265)
++.+..
T Consensus 264 ~~li~~ 269 (403)
T PRK08636 264 KKLVGA 269 (403)
T ss_pred HHHHHH
Confidence 655433
No 78
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.93 E-value=6.4e-24 Score=189.26 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=132.0
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+ +++++++++.+.+|. +++++++++++++. ++..+.++||+|++++|+|+.+. ..+...|
T Consensus 87 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~----~~~~~~g 162 (430)
T PLN00145 87 YNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYE----ARAVFSG 162 (430)
T ss_pred CCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcC
Confidence 4578877 776 588888888776553 34555555569996 66777899999999999999986 4456678
Q ss_pred eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.+++ .|++++++.+.++++++++++|+||||.+.+ +++|+++|+++|++||+||+|+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~ 242 (430)
T PLN00145 163 LEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPF 242 (430)
T ss_pred CEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCc
Confidence 88888764 2789999988889999999999999999987 789999999999999999999754332
Q ss_pred CC----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619 185 RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 185 ~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
.+ ......++++|+||.| +.+|+|.||++..
T Consensus 243 ~~~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~ 277 (430)
T PLN00145 243 VPMGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATC 277 (430)
T ss_pred cchhhhcccCcEEEEecccccc-CCCCeeEEEEEEe
Confidence 11 1224679999999999 6789999999874
No 79
>PRK09082 methionine aminotransferase; Validated
Probab=99.92 E-value=1.9e-24 Score=190.42 Aligned_cols=190 Identities=21% Similarity=0.243 Sum_probs=145.0
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|.+. |.+ +++++++++.+++|.+ +.+++++| ++++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 60 ~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~ 135 (386)
T PRK09082 60 HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYA----PAIELA 135 (386)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhH----HHHHHc
Confidence 4568766 776 5999999999988763 24656555 58886 67778999999999999999986 444567
Q ss_pred CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
|.+++.++.+ |++++++.+.+++++|++++|+||||.+. ++++|+++|+++|+++|+||+|+...+.
T Consensus 136 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~ 215 (386)
T PRK09082 136 GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGH 215 (386)
T ss_pred CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCC
Confidence 8898888864 78999999988899999999999999884 6899999999999999999999643321
Q ss_pred -C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHH
Q 024619 185 -R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 241 (265)
Q Consensus 185 -~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (265)
. ....+.+++++||||.+ |.+|+|+|+++++++.+ ..+...........+...+.
T Consensus 216 ~s~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~iv~~~~l~-~~~~~~~~~~~~~~~~~~q~ 275 (386)
T PRK09082 216 ASVLRHPELRERAFVVSSFGKTY-HVTGWKVGYCVAPAALS-AEFRKVHQYNTFTVNTPAQL 275 (386)
T ss_pred CChhhCcCccCcEEEEeechhhc-cchhhhhhhhhCCHHHH-HHHHHHHhhhcCCCChHHHH
Confidence 1 11135679999999999 67889999999876544 44444444333444544433
No 80
>PRK07682 hypothetical protein; Validated
Probab=99.92 E-value=3.9e-24 Score=188.04 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=144.7
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++.+++.+.+|. ++.+++++| ++|+. ++..++++||+|++++|+|+.+. ..++..
T Consensus 50 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~----~~~~~~ 125 (378)
T PRK07682 50 YTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA----PLVTLA 125 (378)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhH----HHHHHc
Confidence 4568765 776 599999999887664 334555555 58886 66778999999999999999886 444556
Q ss_pred CeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--
Q 024619 118 GVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR-- 185 (265)
Q Consensus 118 g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~-- 185 (265)
|.+++.++. .|++++++++.+++++|++++|+||||.+.+ +++|+++|++|++++|+||+|+...+..
T Consensus 126 g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 205 (378)
T PRK07682 126 GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAY 205 (378)
T ss_pred CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCC
Confidence 778777764 2689999988888999999999999999965 7899999999999999999998544321
Q ss_pred ------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 186 ------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 186 ------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
....+.++++.|+||.+ +.+|+|.||++++++.+ +.+...........+...+..+.+.|
T Consensus 206 ~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~~i-~~l~~~~~~~~~~~~~~~q~a~~~~l 271 (378)
T PRK07682 206 TSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAPVYFS-EAMLKIHQYSMMCAPTMAQFAALEAL 271 (378)
T ss_pred CChhhcccccCCEEEEecCcccc-cChhhhhhhhhcCHHHH-HHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 11124689999999999 66789999999877544 43433343333344444444433333
No 81
>PRK09148 aminotransferase; Validated
Probab=99.92 E-value=7.3e-24 Score=187.79 Aligned_cols=191 Identities=18% Similarity=0.165 Sum_probs=139.0
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
.+.|++. |.+ +++++++++.+.+|. ++.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..
T Consensus 61 ~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~ 136 (405)
T PRK09148 61 THRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHA----FGFIMA 136 (405)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHhc
Confidence 4678887 786 599999999887664 3256677665 8886 66778899999999999999986 344667
Q ss_pred CeEEEeecCC----CHHHHHhh---cCCCceEEEEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619 118 GVVVKRVNTC----DLDEVASA---IGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 118 g~~~~~~~~~----d~~~l~~~---~~~~~~~i~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~--- 184 (265)
|++++.++.+ ..+++++. ..++++++++++|+||||.+.+. ++|+++|+++|++||+||+|+...+.
T Consensus 137 g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~ 216 (405)
T PRK09148 137 GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP 216 (405)
T ss_pred CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCC
Confidence 9999888753 22333333 34678999999999999999874 78999999999999999999743221
Q ss_pred --CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 --RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 --~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
... ..+..+++.||||.+ |.+|+|+||++++++.+ +.+...+.......+...+..
T Consensus 217 ~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~~~~i-~~l~~~~~~~~~~~~~~~q~~ 278 (405)
T PRK09148 217 PPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGNERLI-AALTRVKSYLDYGAFTPIQVA 278 (405)
T ss_pred CCChhhCCCccCcEEEEecccccc-CCcchheeeeeCCHHHH-HHHHHHHHHhccCCChHHHHH
Confidence 111 123467899999999 67789999998766544 444455443333444444333
No 82
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.92 E-value=8.6e-24 Score=187.52 Aligned_cols=201 Identities=19% Similarity=0.175 Sum_probs=146.4
Q ss_pred cceeEeeccCCCCCC--CCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-
Q 024619 9 VSTLLMNFSNEFDPY--GALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM- 80 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~- 80 (265)
....+|+|+ ..++. +..++|......+.. .........|++. |.+ +++++++++.+.+|. + +.+++++|+
T Consensus 30 ~~~~~i~l~-~G~p~~~~~~~~p~~~~~a~~~-~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~ 107 (409)
T PLN00143 30 DHRLAISFG-FGDPSCFECFRTTNIAEDAIVE-AVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCK 107 (409)
T ss_pred CCCceeeCC-CCCCCCCCCCCCCHHHHHHHHH-HHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChH
Confidence 345688888 55553 333333322221111 1111234568766 886 599999999887643 2 455566665
Q ss_pred HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCc
Q 024619 81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPR 152 (265)
Q Consensus 81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~ 152 (265)
+++. ++..++++||.|++++|+|+.+. ..++..|.+++.+++ .|++++++++.++++++++++|||||
T Consensus 108 ~al~~~~~~l~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPT 183 (409)
T PLN00143 108 HAAEIIIKVLARPEANILLPRPGFPDVE----TYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPC 183 (409)
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCCcCHH----HHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCC
Confidence 8886 67778999999999999999996 455677888888864 27899998888889999999999999
Q ss_pred ccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619 153 QQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 153 G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
|.+.+ +++|+++|++++++||+||+|....+. .+ ...+..+++.||||.| +.+|+|.||++++
T Consensus 184 G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~ 257 (409)
T PLN00143 184 GSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTC 257 (409)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhc-CCCccceEEEEee
Confidence 99976 788999999999999999999754321 11 1123569999999998 5688999999984
No 83
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.92 E-value=6.4e-24 Score=187.57 Aligned_cols=221 Identities=21% Similarity=0.285 Sum_probs=155.8
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----C--ceEEecchH-
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----D--RALCFTSGM- 80 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~--~~i~~~~g~- 80 (265)
+..+++|+ .++..- .+++.+.... ... . .....|++. |.+ +++++++++.+.+|. + +.+++++|+
T Consensus 27 ~~~~i~l~-~~~p~~-~~~~~~~~a~-~~~-~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~ 100 (393)
T TIGR03538 27 SKPPIALS-IGEPKH-PTPAFVLEAL-REN-L--HGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR 100 (393)
T ss_pred CCCeEEec-CCCCCC-CCCHHHHHHH-HHH-h--hccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence 35678888 444321 1233333322 111 1 134668877 776 599999999887542 2 357777775
Q ss_pred HHHH-HHHHhcCCCCE--EEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCC
Q 024619 81 AALA-AVTHLLGTGEE--IVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTN 150 (265)
Q Consensus 81 ~al~-~~~~~~~~g~~--viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~n 150 (265)
+++. ++..++++||. |++++|+|+.+. ..++..|.+++.++++ |++++++++.+++++|++++|+|
T Consensus 101 ~al~~~~~~l~~~gd~~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~N 176 (393)
T TIGR03538 101 EALFAFAQAVINPGQAPLVVMPNPFYQIYE----GAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGN 176 (393)
T ss_pred HHHHHHHHHHcCCCCcceEEecCCCCcchH----HHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCC
Confidence 8886 66778999986 899999999986 4557788899888752 67888888777899999999999
Q ss_pred Ccccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC---C---------C---CCCccEEEeccccccccCCCceeeE
Q 024619 151 PRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR---P---------L---ELGADIVMHSATKFIAGHSDVMAGV 212 (265)
Q Consensus 151 p~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~---~---------~---~~~~di~~~s~sK~~~g~~g~~~G~ 212 (265)
|||.+.+ +++|+++|+++|++||+||+|....+.. + . ..+..+++.|+||.+ +.+|+|+||
T Consensus 177 PtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlRvG~ 255 (393)
T TIGR03538 177 PTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLRSGF 255 (393)
T ss_pred CcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccceEE
Confidence 9999976 7899999999999999999997433210 0 0 124569999999988 667899999
Q ss_pred EEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 213 LAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
++++++.+ +.+...+.......+...+..
T Consensus 256 ~i~~~~l~-~~~~~~~~~~~~~~~~~~q~~ 284 (393)
T TIGR03538 256 VAGDAEIL-KAFLRYRTYHGCAMPIPTQLA 284 (393)
T ss_pred EecCHHHH-HHHHHHHHhhccCcCHHHHHH
Confidence 98876554 334444443344445444443
No 84
>PRK07550 hypothetical protein; Provisional
Probab=99.92 E-value=1e-23 Score=185.84 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=146.6
Q ss_pred CCccCCC-CChh-HHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+. ++++++++.+.+|.. +.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..|
T Consensus 60 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g 135 (386)
T PRK07550 60 AHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHK----MWLDMLG 135 (386)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHhcC
Confidence 4568776 8875 899999999887643 466666664 8886 66677899999999999998886 4457789
Q ss_pred eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.++.+ |++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+.....
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~ 215 (386)
T PRK07550 136 IRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAP 215 (386)
T ss_pred CEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC
Confidence 999988863 678899988888999999999999999976 789999999999999999998643211
Q ss_pred -CCC---C-CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 185 -RPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 185 -~~~---~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
... + .+..+++.|+||.+ |.+|+|+|+++++++.+.. ............+...+..+.+.++
T Consensus 216 ~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~~~~~~-~~~~~~~~~~~~s~~~q~~~~~~l~ 282 (386)
T PRK07550 216 HDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASPARIAE-IEKFMDTVAICAPRIGQIAVAWGLP 282 (386)
T ss_pred cchhhCCCccccEEEEecchhhc-cCcccceEeeecCHHHHHH-HHHHHhhcccCCCcHHHHHHHHHhc
Confidence 111 1 23468899999999 6678999999987755434 3334333334445444444444333
No 85
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.92 E-value=4.4e-24 Score=194.55 Aligned_cols=197 Identities=18% Similarity=0.222 Sum_probs=143.9
Q ss_pred eeEeeccCCC-CCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-HHH
Q 024619 11 TLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AAL 83 (265)
Q Consensus 11 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-~al 83 (265)
..+++|+.++ +.++..+|+.+........ . ....|++. |.+ +++++.+++.+..+. + +.|++++|+ +++
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~--~--~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal 221 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQL--T--DTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI 221 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHHh--h--cCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence 4678888323 3334333333322221111 1 23468887 775 589999988766532 2 466666665 888
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~ 155 (265)
. ++..++++||+|++++|+|+.+. ..++..|.+++.++. .|++++++++.+++++|++++|+||||.+
T Consensus 222 ~~~~~~l~~~Gd~Vli~~P~y~~y~----~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v 297 (517)
T PRK13355 222 NLSMSALLDDGDEVLIPSPDYPLWT----ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGAL 297 (517)
T ss_pred HHHHHHhCCCCCEEEEcCCCCcCHH----HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcC
Confidence 6 67788999999999999999997 455677888888764 37899999998899999999999999999
Q ss_pred cc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCC--C-ccEEEeccccccccCCCceeeEEEee
Q 024619 156 CD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLEL--G-ADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 156 ~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~--~-~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
.+ +++|+++|++||++||+||+|..-.+. ..... + ..+++.||||.+ +.+|+|+||++.+
T Consensus 298 ~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~ 368 (517)
T PRK13355 298 YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILS 368 (517)
T ss_pred cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEee
Confidence 87 899999999999999999999743321 11111 1 346679999999 6789999999864
No 86
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.92 E-value=5.1e-24 Score=188.01 Aligned_cols=245 Identities=18% Similarity=0.124 Sum_probs=172.5
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA 85 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~ 85 (265)
...+++|+ +|||+|+..+|.+............ .+..-++. |+ ...+++|+.+++++|.++++++++|..|. .+
T Consensus 101 ~r~~l~Fs-SndYLGL~~~p~v~~a~~~ai~~yG-~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~ 178 (476)
T PLN02955 101 FKKLLLFS-GNDYLGLSSHPTISNAAANAAKEYG-MGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAA 178 (476)
T ss_pred CceEEEee-ccCccCCCCCHHHHHHHHHHHHHcC-CCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHH
Confidence 45799999 9999999999988876533322121 22233333 66 45899999999999999999999999665 45
Q ss_pred HHHh--------------cCCCCEEEEcCCCCCChHHHHHhhcCCC-CeEEEeecCCCHHHHHhhcC---CCceEEEEec
Q 024619 86 VTHL--------------LGTGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIG---PWTKLVWVES 147 (265)
Q Consensus 86 ~~~~--------------~~~g~~viv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~ 147 (265)
+..+ ..+++.|+.+...|.+..... ..++.. +.++..++..|++++++.+. .+.++|++++
T Consensus 179 i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~-~ls~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~Eg 257 (476)
T PLN02955 179 MVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGV-RLAERQGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDS 257 (476)
T ss_pred HHHHhhccccccccccccCCCCcEEEEeccchHHHHHHH-HhccccCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeC
Confidence 5444 245667888888888877555 233333 57888889999999988874 3467889999
Q ss_pred CCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 148 ~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
..++.|.+.|+++|.++|++||+++|+||+|+.|.++. ....+.||+++||+|.+++ ++|+++++++
T Consensus 258 V~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~----~GGfi~gs~~ 333 (476)
T PLN02955 258 LFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC----HGGFIACSKK 333 (476)
T ss_pred CCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc----cCceeecHHH
Confidence 99999999999999999999999999999999877652 1123678999999999853 3688888764
Q ss_pred hHHHHHHHHHH--hccCCCChhHHHHHHhccC---chHhhHHHHhhchh
Q 024619 219 RLAKELYFLQN--AEGSGLAPFDCWICLRGVK---TMALRVEKQQVCFF 262 (265)
Q Consensus 219 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~ 262 (265)
+.+.+..... .....+++..+...+.+++ +...+..++++|.+
T Consensus 334 -~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~ 381 (476)
T PLN02955 334 -WKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVK 381 (476)
T ss_pred -HHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3343332222 2233445444444444333 22344555555544
No 87
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-24 Score=187.33 Aligned_cols=166 Identities=33% Similarity=0.431 Sum_probs=148.3
Q ss_pred hHHHHHHHHHhHhCCC--ceEEecchH-HHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD--RALCFTSGM-AALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..++.++.+++++|++ +.|+++.|+ +++. +..++ ..+||+|++++-.|++....|..++++.|++++.++.+
T Consensus 67 ~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~ 146 (405)
T COG0520 67 LYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD 146 (405)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC
Confidence 4788999999999987 577777776 8887 44555 68999999999999999999999999999999999864
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
+.+++++.++++|++|.+++.+|.||.+.|+++|+++||++|+++++|.+|+.+..+ +..+.++|++++|.+||+
T Consensus 147 ~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl 226 (405)
T COG0520 147 DGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWL 226 (405)
T ss_pred CCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccc
Confidence 689999999999999999999999999999999999999999999999999999987 456779999999999999
Q ss_pred ccCCCceeeEEEeechhHHHH
Q 024619 203 AGHSDVMAGVLAVKGERLAKE 223 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~ 223 (265)
.||.| +|+++++++.+.++
T Consensus 227 ~gP~G--iGvLy~r~~~l~~l 245 (405)
T COG0520 227 LGPTG--IGVLYVRKELLEEL 245 (405)
T ss_pred cCCCc--eEEEEEchHHHhhc
Confidence 99988 59999999776553
No 88
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.92 E-value=7.6e-24 Score=186.96 Aligned_cols=191 Identities=19% Similarity=0.209 Sum_probs=143.0
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|.+. |.+ +++++++++.+.+|. +++++++++++++. ++..++++||.|++++|+|..+. ..++..|
T Consensus 63 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~----~~~~~~g 138 (391)
T PRK08361 63 WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYV----EDAKIAE 138 (391)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH----HHHHHcC
Confidence 4557665 776 588888888877653 24445544568886 66778899999999999999986 4456678
Q ss_pred eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.+++ .|++++++.+.++++++++++|+||||.+.+ +++|+++|+++++++|+||+|+...+.
T Consensus 139 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 218 (391)
T PRK08361 139 AKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKH 218 (391)
T ss_pred CEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCC
Confidence 88888865 3789999999888999999999999999988 889999999999999999999754321
Q ss_pred -CC--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 -RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 -~~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
.. ...+.++++.|+||.+ |.+|+|+|+++++++.+.. ............+...+..
T Consensus 219 ~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~ 277 (391)
T PRK08361 219 YPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPEQVIKD-MIKLHAYIIGNVASFVQIA 277 (391)
T ss_pred CCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCHHHHHH-HHHHHhhhccCCChHHHHH
Confidence 11 1235689999999999 6679999999987755543 3333333333444444333
No 89
>PRK07777 aminotransferase; Validated
Probab=99.92 E-value=1.5e-23 Score=184.79 Aligned_cols=170 Identities=25% Similarity=0.314 Sum_probs=133.5
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+.+|.+ +.+++++| ++++. ++..++++||+|++..|+|+.+. ..++..
T Consensus 54 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~----~~~~~~ 129 (387)
T PRK07777 54 VNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYA----AVIAMA 129 (387)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH----HHHHHC
Confidence 4568876 776 5888999988887753 23555555 68886 67778899999999999999886 444566
Q ss_pred CeEEEeecC--------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 024619 118 GVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-- 184 (265)
Q Consensus 118 g~~~~~~~~--------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-- 184 (265)
|.+++.++. .|++++++.+.+++++|++++|+||||.+.+ +++|+++|+++++++|+||+|+...+.
T Consensus 130 g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 209 (387)
T PRK07777 130 GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA 209 (387)
T ss_pred CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC
Confidence 777777754 3689999988888999999999999999964 789999999999999999999743321
Q ss_pred ------C-CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 185 ------R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 185 ------~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
. +...+.++++.|+||.+ |.+|+|+|+++.+++.+
T Consensus 210 ~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~l~ 251 (387)
T PRK07777 210 RHLPLATLPGMRERTVTISSAAKTF-NVTGWKIGWACGPAPLI 251 (387)
T ss_pred CcccHhhCCCCcCcEEEEeechhhc-cCcCceeEEEecCHHHH
Confidence 0 11134789999999999 66799999998877544
No 90
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.92 E-value=5.4e-24 Score=190.15 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=143.5
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~ 122 (265)
..|++. |.+ +++.+.+++.+..+.++.+++++|+ +++. ++..++++||.|++++|+|+.+. ..++..|++++
T Consensus 115 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~----~~~~~~g~~~~ 190 (431)
T PRK15481 115 RLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSI----NMLRYAGFSAS 190 (431)
T ss_pred hhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHH----HHHHHcCCeEE
Confidence 467776 764 5777877776655555466666665 8886 67788999999999999999997 55677899999
Q ss_pred eecCC----CHHHHHhhcCCCceEEEEe-cCCCCccccccH---HHHHHHHHHc-CCEEEEeCCcCCCCC---cCCC--C
Q 024619 123 RVNTC----DLDEVASAIGPWTKLVWVE-SPTNPRQQICDI---RKIAEMAHAH-GALLLVDNSIMSPVL---SRPL--E 188 (265)
Q Consensus 123 ~~~~~----d~~~l~~~~~~~~~~i~~~-~~~np~G~~~~l---~~i~~~a~~~-~~~li~D~~~~~~~~---~~~~--~ 188 (265)
.++++ |++++++++.+++++++++ +||||||.+.+. ++|.++|+++ +++||+||+|+.... .... .
T Consensus 191 ~v~~~~~g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~ 270 (431)
T PRK15481 191 PVSVDAEGMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQT 270 (431)
T ss_pred eeccCCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCC
Confidence 98864 6889998887788988886 999999999886 5999999999 999999999974321 1111 2
Q ss_pred CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 189 ~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
.+..++++||||.+ + +|+|.||++.+++.+.. +...........+...+.++...|
T Consensus 271 ~~~vi~~~SfSK~~-~-~GlRiG~~i~~~~~~~~-~~~~~~~~~~~~s~~~q~a~~~~l 326 (431)
T PRK15481 271 TQRWALIRSVSKAL-G-PDLRLAFVASDSATSAR-LRLRLNSGTQWVSHLLQDLVYACL 326 (431)
T ss_pred CCCEEEEeeecccc-C-CCceeEEEeCCHHHHHH-HHHHHhccccCCCHHHHHHHHHHH
Confidence 34679999999999 5 69999999987654433 333333333345555544444433
No 91
>PRK06855 aminotransferase; Validated
Probab=99.92 E-value=2.8e-23 Score=185.40 Aligned_cols=168 Identities=20% Similarity=0.296 Sum_probs=129.1
Q ss_pred CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
..+.|++. |.+ +++++++++.+.+|.+ +.+++++|+ +++..+..++++||.|++++|+|+.+... .....|
T Consensus 65 ~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~---~~~~~g 141 (433)
T PRK06855 65 KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYSTHSSA---EAAHAG 141 (433)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCchHHHH---HHHhcC
Confidence 45789887 887 5999999998876643 456666665 88875556889999999999999987521 123346
Q ss_pred eEEEeecC-------CCHHHHHhhcC--CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC-
Q 024619 119 VVVKRVNT-------CDLDEVASAIG--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR- 185 (265)
Q Consensus 119 ~~~~~~~~-------~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~- 185 (265)
++++.+++ .|++++++.+. ++++++++++|+||||.+++ +++|+++|+++|++||+||+|+.-.+..
T Consensus 142 ~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~ 221 (433)
T PRK06855 142 YPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGK 221 (433)
T ss_pred CeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 77766653 27899999886 46899999999999999976 6889999999999999999997543311
Q ss_pred ---C-C---CCCccEEEeccccccccCCCceeeEEEee
Q 024619 186 ---P-L---ELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 186 ---~-~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
+ . ..+..|++.||||.+ +.+|+|+||++.+
T Consensus 222 ~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p 258 (433)
T PRK06855 222 KTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVY 258 (433)
T ss_pred CCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEe
Confidence 1 1 112469999999999 6678999999974
No 92
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.92 E-value=9.3e-24 Score=176.79 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCC-hhHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HH
Q 024619 13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKAD---RALCFTSGM-AALA-AV 86 (265)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~ 86 (265)
++.+- ..|..-..+|++.++..- ..+.+.++|+ .+. .+.+++..+.++.++-+ +.++++.|- .++. ++
T Consensus 27 vlPmW-VADMDf~~pp~i~~Al~~----rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I 100 (388)
T COG1168 27 VLPMW-VADMDFPTPPEIIEALRE----RVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAI 100 (388)
T ss_pred cceee-eecccCCCCHHHHHHHHH----HHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHH
Confidence 33443 556655666666666332 2345788998 544 47999999999998754 567777775 8886 88
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------CHHHHHhhcC-CCceEEEEecCCCCcccc--
Q 024619 87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--------DLDEVASAIG-PWTKLVWVESPTNPRQQI-- 155 (265)
Q Consensus 87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------d~~~l~~~~~-~~~~~i~~~~~~np~G~~-- 155 (265)
..+.++||.|++..|.|+++. ...+..|.+++.+|+. |++++++++. ++++++++|+||||+|.+
T Consensus 101 ~~~T~~gd~Vvi~tPvY~PF~----~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt 176 (388)
T COG1168 101 RALTKPGDGVVIQTPVYPPFY----NAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWT 176 (388)
T ss_pred HHhCcCCCeeEecCCCchHHH----HHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcccc
Confidence 999999999999999999997 5668899999999864 8999999987 457999999999999999
Q ss_pred -ccHHHHHHHHHHcCCEEEEeCCcCCCCCc----------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH-H
Q 024619 156 -CDIRKIAEMAHAHGALLLVDNSIMSPVLS----------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E 223 (265)
Q Consensus 156 -~~l~~i~~~a~~~~~~li~D~~~~~~~~~----------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~-~ 223 (265)
.+|.+|.++|++||+.||.||+|+.-.+. ++...+..+++.|.||+|+ -+|++++.++..++.+.. .
T Consensus 177 ~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~~ 255 (388)
T COG1168 177 KEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAKF 255 (388)
T ss_pred HHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHHH
Confidence 46899999999999999999999855442 1222356799999999995 678999999998887744 3
Q ss_pred HHHHHHhccCCCCh
Q 024619 224 LYFLQNAEGSGLAP 237 (265)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (265)
...+........+.
T Consensus 256 ~~~l~~~~~~~~n~ 269 (388)
T COG1168 256 LKRLKRNGLHGPSA 269 (388)
T ss_pred HHHHHHhcCCCCch
Confidence 44444444444553
No 93
>PRK07683 aminotransferase A; Validated
Probab=99.92 E-value=1.7e-23 Score=184.43 Aligned_cols=173 Identities=19% Similarity=0.211 Sum_probs=135.3
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC--C-c-eEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-R-ALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~-~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+.+|. + + .+++++| ++|+. ++..++++||+|+++.|+|+.+. .+++..
T Consensus 58 ~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~ 133 (387)
T PRK07683 58 YTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYE----PIIRLC 133 (387)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchH----HHHHHc
Confidence 4578766 776 488888888776553 2 2 4555555 59986 66677899999999999999886 444667
Q ss_pred CeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 118 GVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
|++++.++.+ |.+++++.+.+++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 134 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 213 (387)
T PRK07683 134 GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT 213 (387)
T ss_pred CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC
Confidence 8999988754 568899888888999999999999999965 789999999999999999999854332
Q ss_pred CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619 185 RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223 (265)
Q Consensus 185 ~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~ 223 (265)
... ..+.++++.|+||.+ |.+|+|.||++.+++.+...
T Consensus 214 ~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~~l~~~~ 255 (387)
T PRK07683 214 SIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPSYLAKHI 255 (387)
T ss_pred ChhhccCCcCCeEEEeeccccc-cCccceeEEEEcCHHHHHHH
Confidence 111 124579999999999 66789999999887655443
No 94
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.92 E-value=1.9e-23 Score=187.83 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=142.9
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhC----CC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC-C
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K 116 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~-~ 116 (265)
..|++. |.+ +++++++++.+.+| .+ +.|++++|+ +++. ++..++++||.|++++|.|+.+.. .+. .
T Consensus 80 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~----~~~~~ 155 (468)
T PLN02450 80 ALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDR----DLKWR 155 (468)
T ss_pred hcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHH----HHhhc
Confidence 447776 875 59999999988765 22 456677776 8886 677789999999999999999963 334 5
Q ss_pred CCeEEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619 117 TGVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS 180 (265)
Q Consensus 117 ~g~~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~ 180 (265)
.|++++.++.+ |++++++++. .++++|++++|+||||.+++ +++|+++|+++|++||+||+|+.
T Consensus 156 ~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~ 235 (468)
T PLN02450 156 TGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSG 235 (468)
T ss_pred CCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccc
Confidence 78899888753 5677877764 37899999999999999976 67899999999999999999984
Q ss_pred CCCc-----CCC------------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619 181 PVLS-----RPL------------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243 (265)
Q Consensus 181 ~~~~-----~~~------------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (265)
..+. +.. ..+..+++.||||.+ +.+|+|+|+++++++.+.+........ ...+...+..+
T Consensus 236 ~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a~ 312 (468)
T PLN02450 236 TVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYLL 312 (468)
T ss_pred cccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3221 101 234679999999999 678999999999866554544333222 23454444444
Q ss_pred HhccC
Q 024619 244 LRGVK 248 (265)
Q Consensus 244 ~~~l~ 248 (265)
...|+
T Consensus 313 ~~~L~ 317 (468)
T PLN02450 313 SALLS 317 (468)
T ss_pred HHHhC
Confidence 44443
No 95
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.92 E-value=1.3e-23 Score=186.52 Aligned_cols=172 Identities=13% Similarity=0.200 Sum_probs=128.4
Q ss_pred CCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 45 GPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
..+.|++. |.+ +++++++++.+..|. + +.|++++|+ +++.++..++++||+|++++|+|+.+. ..++..|
T Consensus 68 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~----~~~~~~g 143 (409)
T PRK07590 68 TFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYV----DTNVMAG 143 (409)
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcC
Confidence 34678766 876 589999988776653 2 567777776 888766777899999999999999997 4446666
Q ss_pred eE-----------EEeecCCCHHHHHhhc-CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC
Q 024619 119 VV-----------VKRVNTCDLDEVASAI-GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL 183 (265)
Q Consensus 119 ~~-----------~~~~~~~d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~ 183 (265)
.+ ++.++++.-+.+...+ .+++++|++++|+||||.+++ +++|+++|++||++||+||+|+....
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~ 223 (409)
T PRK07590 144 RTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFIS 223 (409)
T ss_pred CcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhcc
Confidence 65 7777764211222222 267899999999999999976 67899999999999999999974322
Q ss_pred c----CC-C----CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619 184 S----RP-L----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 184 ~----~~-~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
. .+ . ..+..|+++||||.+ |.+|+|+||++++++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~~i~~~~li~ 269 (409)
T PRK07590 224 DPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAYTVVPKELKG 269 (409)
T ss_pred CCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEEEEcCHHHhh
Confidence 1 11 1 113568999999999 678899999998876653
No 96
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.92 E-value=7.5e-24 Score=187.24 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=153.3
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccC---CC-CCh-hHHHHHHHHHhHhCCCceEEecchHHHH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT---RS-GNP-TRDALESLLAKLDKADRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~---~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al 83 (265)
.+..+++|+ +++++|..++|.+......... . ..+.|. .. |.+ .++++++++++++|.++.+++++|++++
T Consensus 40 ~g~~~i~l~-~~~~~~~~~~~~i~~a~~~~~~--~-~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~ 115 (397)
T PRK06939 40 DGKEVINFC-ANNYLGLANHPELIAAAKAALD--S-HGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDAN 115 (397)
T ss_pred CCCeEEEee-ccCccccCCCHHHHHHHHHHHH--H-cCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHH
Confidence 345789999 7888888777766554322211 1 112232 22 664 6999999999999988899999998777
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC------CceEEEEecCCCCccccc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP------WTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~ 156 (265)
. ++..++++||+|++++|.|+++... ++..+.+++.++..|++++++.+.+ ++++|++++.+|++|.+.
T Consensus 116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~ 191 (397)
T PRK06939 116 GGLFETLLGKEDAIISDALNHASIIDG----VRLCKAKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA 191 (397)
T ss_pred HHHHHHhCCCCCEEEEEhhhhHHHHHH----HHhcCCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC
Confidence 4 6777899999999999999988643 3456777788877788888877752 678888888999999999
Q ss_pred cHHHHHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 157 DIRKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
++++|.++|+++|++||+||+|+.+.... ....+.|++++|+||+++|+ ++|+++++++.+
T Consensus 192 ~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~---r~G~v~~~~~~~ 261 (397)
T PRK06939 192 PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA---SGGYTAGRKEVI 261 (397)
T ss_pred CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc---CceEEEeCHHHH
Confidence 99999999999999999999997654321 11225789999999999543 579998876544
No 97
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.92 E-value=3.2e-23 Score=183.15 Aligned_cols=226 Identities=22% Similarity=0.277 Sum_probs=158.1
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchHHHHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA 84 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~~al~ 84 (265)
..+++|+ .++.... +++.+....... .......|++. |.+ +++++++++.+.+|.. ++++++++++++.
T Consensus 31 ~~~~~l~-~~~~~~~-~~~~~~~~~~~~---~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~ 105 (393)
T PRK05764 31 RDVISLG-AGEPDFD-TPEHIKEAAIEA---LDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY 105 (393)
T ss_pred CCEEEeC-CCCCCCC-CCHHHHHHHHHH---HhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence 4578898 4443222 233333322111 11133457766 654 5888888887776532 3444444568986
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
++..++++||.|++++|+|..+. ..++..|++++.++.+ |++++++.+.+++++|++++|+||||.+.
T Consensus 106 ~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~ 181 (393)
T PRK05764 106 NAFMALLDPGDEVIIPAPYWVSYP----EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVY 181 (393)
T ss_pred HHHHHhcCCCCEEEecCCCCcchH----HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCccc
Confidence 66778999999999999999886 4456778999888763 57899998888899999999999999996
Q ss_pred c---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----C-----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619 157 D---IRKIAEMAHAHGALLLVDNSIMSPVLS-----R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223 (265)
Q Consensus 157 ~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~ 223 (265)
+ +++|+++|++||+++++||+|+...+. . ....+.++++.|+||.+ +.+|+|+|+++.+++ +.+.
T Consensus 182 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~i~~~~~-~~~~ 259 (393)
T PRK05764 182 SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY-AMTGWRLGYAAGPKE-LIKA 259 (393)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc-cCccceeEEEecCHH-HHHH
Confidence 4 789999999999999999999754321 0 11235789999999999 667899999987654 4444
Q ss_pred HHHHHHhccCCCChhHHHHHHhcc
Q 024619 224 LYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
....+.......++..++.+.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~q~~~~~~l 283 (393)
T PRK05764 260 MSKLQSHSTSNPTSIAQYAAVAAL 283 (393)
T ss_pred HHHHHhhcccCCChHHHHHHHHHH
Confidence 555554445556666555544444
No 98
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.92 E-value=1.2e-23 Score=186.77 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=165.4
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCC---CChHHHHHhhcCCCCeEEEeecC---CC
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---GGTDRLLSRVTPKTGVVVKRVNT---CD 128 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~---~~~~~~~~~~~~~~g~~~~~~~~---~d 128 (265)
...+.+++.+++++|+++.+++++|++|+.++...+.+||+|++++..| ++.... ...++..|+++++++. .+
T Consensus 122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~ 200 (454)
T TIGR00474 122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTH 200 (454)
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCC
Confidence 4578999999999999999999999999875556789999999998774 333322 3456778999999986 57
Q ss_pred HHHHHhhcCCCceEEEEecCCCCc--c--ccccHHHHHHHHHHcCCEEEEeCCcCC---------CC---CcCCCCCCcc
Q 024619 129 LDEVASAIGPWTKLVWVESPTNPR--Q--QICDIRKIAEMAHAHGALLLVDNSIMS---------PV---LSRPLELGAD 192 (265)
Q Consensus 129 ~~~l~~~~~~~~~~i~~~~~~np~--G--~~~~l~~i~~~a~~~~~~li~D~~~~~---------~~---~~~~~~~~~d 192 (265)
+++++++++++|++|++++++|++ | .+.|+++|+++|+++|+++++|.+.+. +. ...+...++|
T Consensus 201 l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD 280 (454)
T TIGR00474 201 LKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD 280 (454)
T ss_pred HHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence 899999999999999999999985 6 478999999999999999999976221 11 1234567899
Q ss_pred EEEeccccccccCCCceeeEEEeechhH--------HHHHH-------HHHHhccCCCChhHHHHHHhccCchHhhHHHH
Q 024619 193 IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 257 (265)
Q Consensus 193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (265)
++++|.+||++||. +|+++++++.+ ...++ .+....+..+++..+|..++.|+.+..+++++
T Consensus 281 iv~fSg~K~LgGp~---~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~ 357 (454)
T TIGR00474 281 LVTFSGDKLLGGPQ---AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEEL 357 (454)
T ss_pred EEEecCccccCCCe---EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHH
Confidence 99999999997773 79999887665 22233 34456667788888999999999999999999
Q ss_pred hhchhcc
Q 024619 258 QVCFFDL 264 (265)
Q Consensus 258 ~~~~~~l 264 (265)
++++..+
T Consensus 358 ~~~A~~l 364 (454)
T TIGR00474 358 RARAERL 364 (454)
T ss_pred HHHHHHH
Confidence 9888765
No 99
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.92 E-value=3.1e-23 Score=184.19 Aligned_cols=200 Identities=18% Similarity=0.230 Sum_probs=144.1
Q ss_pred cceeEeeccCCCCCCC--CCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC--------CC-ceEE
Q 024619 9 VSTLLMNFSNEFDPYG--ALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK--------AD-RALC 75 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g--------~~-~~i~ 75 (265)
.+..+++|+.+..... ..+++.+....... ........|++. |.+ +++++.+++.+.++ .+ +.++
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~--~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~ 108 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEA--VDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVV 108 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHH--hhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEE
Confidence 4567899983322221 23344444332111 111234678877 776 58899999887543 22 4555
Q ss_pred ecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEe
Q 024619 76 FTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVE 146 (265)
Q Consensus 76 ~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~ 146 (265)
+++| ++++. ++..++++||+|+++.|+|+.+. ..++..|++++.++.+ |++++++.+.+++++|+++
T Consensus 109 it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 184 (412)
T PTZ00433 109 LCSGVSHAILMALTALCDEGDNILVPAPGFPHYE----TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMT 184 (412)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCcccHH----HHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEe
Confidence 5555 58886 67778899999999999999986 5557788888888753 6889988888889999999
Q ss_pred cCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCC---CCccEEEeccccccccCCCceeeEEEe
Q 024619 147 SPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLE---LGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 147 ~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~---~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
+|+||||.+.+ +++|+++|+++|++||+||+|....+. .... ....++++||||.+ |.+|+|.||+++
T Consensus 185 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~~i~ 263 (412)
T PTZ00433 185 NPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGWLLL 263 (412)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEEEEE
Confidence 99999999865 788899999999999999999743321 1111 12468999999999 678999999997
No 100
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.92 E-value=3.8e-23 Score=182.46 Aligned_cols=196 Identities=16% Similarity=0.208 Sum_probs=143.0
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
..|.+. |.+ +++++++++.+.+|. ++.+++++| ++++. ++..++++||+|++++|+|+.+. ..++..|
T Consensus 61 ~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g 136 (391)
T PRK07309 61 SHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYE----PIVNLVG 136 (391)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcC
Confidence 357766 776 588999999877664 244555555 58886 67778899999999999999986 4456678
Q ss_pred eEEEeecCC------CHHHHHhhcCC---CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 024619 119 VVVKRVNTC------DLDEVASAIGP---WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-- 184 (265)
Q Consensus 119 ~~~~~~~~~------d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-- 184 (265)
.+++.++.+ |++++++++.+ ++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+...+.
T Consensus 137 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~ 216 (391)
T PRK07309 137 AEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGE 216 (391)
T ss_pred CEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCC
Confidence 888888753 67888888753 6899999999999999865 789999999999999999999754331
Q ss_pred ---CC--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 185 ---RP--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 185 ---~~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.. ...+..+++.|+||.+ |.+|+|.|+++++++.+.... ..........+...+..+.+.++
T Consensus 217 ~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRvG~~v~~~~~~~~~~-~~~~~~~~~~~~~~q~~~~~~l~ 283 (391)
T PRK07309 217 PHVSIAEYLPDQTILINGLSKSH-AMTGWRIGLIFAPAEFTAQLI-KSHQYLVTAATTMAQFAAVEALT 283 (391)
T ss_pred CCCCHHHhccCCEEEEecChhhc-cCccceeEEEEeCHHHHHHHH-HHHhhcccCCChHHHHHHHHHHh
Confidence 11 1224679999999999 667999999998876554433 33333333344444444333343
No 101
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.92 E-value=6.6e-24 Score=187.03 Aligned_cols=207 Identities=18% Similarity=0.190 Sum_probs=159.8
Q ss_pred CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCC---ccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPY---DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
..+.++||+. --.-+|+.++....+..... ....+... .......+..+++++.+++++|.++.+++++|++++.
T Consensus 15 ~~~~~~~~~~-~~~~~~p~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~ 92 (387)
T PRK09331 15 RLEEEFINLD-PIQRGGILTPEARKALIEYG-DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKF 92 (387)
T ss_pred cccccccccC-hhhcCCCCCHHHHHHHHHHH-hccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 3455678877 55557877777666654222 11112211 1222234679999999999999998888888888885
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcC-------CCceEEEEecCC
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG-------PWTKLVWVESPT 149 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~-------~~~~~i~~~~~~ 149 (265)
++..++++||+|+++.++|.+... .++..|++++.++. .|++++++++. +++++|++++++
T Consensus 93 ~al~~l~~~gd~Vlv~~~~h~s~~~----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~ 168 (387)
T PRK09331 93 AVMHSLCKKGDYVVLDGLAHYTSYV----AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVD 168 (387)
T ss_pred HHHHHhcCCCCEEEECCCchHHHHH----HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCC
Confidence 777889999999999999877753 34667899999886 37899988875 268999999999
Q ss_pred CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619 150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 150 np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
|++|.+.|+++|.++|+++|+++++|++|+.|.++ .....+.|++++|++|++++|+| +|+++++++.+..
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~--~G~l~~~~~~i~~ 240 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAP--SGVLATTEEYADK 240 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCC--EEEEEECHHHHhh
Confidence 99999999999999999999999999999988764 34456899999999999987665 6999887755443
No 102
>PRK08175 aminotransferase; Validated
Probab=99.92 E-value=2.2e-23 Score=184.22 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=151.2
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGM-AAL 83 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~-~al 83 (265)
..+++|+ ..+..+..++..+.... .. ......+.|++. |.+ +++++++++.+.+|. ++.+++++|+ +++
T Consensus 29 ~~~i~l~-~g~p~~~~~~~~~~~~~-~~--~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 29 EDIIDFS-MGNPDGPTPPHIVEKLC-EV--AQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCeEEcC-CCCCCCCCCHHHHHHHH-HH--HhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 4578888 44444433322333321 11 111234678877 886 599999999877653 2357777776 888
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcC---CCceEEEEecCCCCcccc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIG---PWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~---~~~~~i~~~~~~np~G~~ 155 (265)
. ++..++++||+|++++|+|+.+... ++..|.+++.++.+ ..++++++++ +++++|++++|+||||.+
T Consensus 105 ~~~~~~~~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~ 180 (395)
T PRK08175 105 AHLMLATLDHGDTVLVPNPSYPIHIYG----AVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQC 180 (395)
T ss_pred HHHHHHhCCCCCEEEEcCCCCcchHHH----HHHcCCeEEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCC
Confidence 6 6677899999999999999988643 35678888888764 3677777665 478999999999999999
Q ss_pred ccH---HHHHHHHHHcCCEEEEeCCcCCCCCc-----CCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619 156 CDI---RKIAEMAHAHGALLLVDNSIMSPVLS-----RPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223 (265)
Q Consensus 156 ~~l---~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~ 223 (265)
.+. ++|+++|+++|+++|+||+|+...+. ... ..+..+++.|+||.+ |.+|+|+||++.+++.+ +.
T Consensus 181 ~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~~~l~-~~ 258 (395)
T PRK08175 181 VELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGNPELV-SA 258 (395)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCCHHHH-HH
Confidence 876 79999999999999999999643321 111 124568899999999 67889999998766544 44
Q ss_pred HHHHHHhccCCCC
Q 024619 224 LYFLQNAEGSGLA 236 (265)
Q Consensus 224 ~~~~~~~~~~~~~ 236 (265)
+...+.......+
T Consensus 259 ~~~~~~~~~~~~~ 271 (395)
T PRK08175 259 LARIKSYHDYGTF 271 (395)
T ss_pred HHHHHhhcccCCC
Confidence 4444443333333
No 103
>PRK07337 aminotransferase; Validated
Probab=99.92 E-value=2.7e-23 Score=183.27 Aligned_cols=191 Identities=23% Similarity=0.254 Sum_probs=141.0
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+ +++++++++.+.+|.+ +.+++++| ++++. ++..++++||+|++++|+|+.+.. .++..|
T Consensus 60 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g 135 (388)
T PRK07337 60 VTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRH----FVAAAE 135 (388)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH----HHHHcC
Confidence 4568776 775 5889999988877642 34445555 58886 667789999999999999999863 345567
Q ss_pred eEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.++.+ |++++++.+.+++++|++++|+||||.+.+ +++|+++|+++++++|+||+|....+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 215 (388)
T PRK07337 136 GRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV 215 (388)
T ss_pred CEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence 788877653 689999999889999999999999999875 788999999999999999998743321
Q ss_pred CCCCC-CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 RPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 ~~~~~-~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
..... +..+++.|+||.+ +.+|+|+||++++++.+ +.+...........+...+..
T Consensus 216 ~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~~l~-~~l~~~~~~~~~~~s~~~q~~ 272 (388)
T PRK07337 216 SALSLGDDVITINSFSKYF-NMTGWRLGWLVVPEALV-GTFEKLAQNLFICASALAQHA 272 (388)
T ss_pred ChhhccCCEEEEEechhhc-CCchhheeeeecCHHHH-HHHHHHHHHhccCCChHHHHH
Confidence 11122 2347899999999 67889999999877544 444444433333444444433
No 104
>PLN02656 tyrosine transaminase
Probab=99.91 E-value=4.6e-23 Score=182.92 Aligned_cols=200 Identities=21% Similarity=0.208 Sum_probs=144.7
Q ss_pred cceeEeeccCCCCCC--CCCC-CCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-
Q 024619 9 VSTLLMNFSNEFDPY--GALS-TPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG- 79 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g- 79 (265)
.+..+++|+ ..+.. +..+ ++.+.... . +.......+.|++. |.+ +++++++++.+.+|.. +.+++++|
T Consensus 29 ~~~~~i~l~-~G~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 105 (409)
T PLN02656 29 NGKRVISLG-MGDPTAYSCFHTTHVAQEAV-V-DALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGC 105 (409)
T ss_pred cCCeeeecC-CCCCCcCCCCCCCHHHHHHH-H-HHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCCh
Confidence 445789998 44442 2222 23333321 1 11122234678777 776 5888999888765532 34445555
Q ss_pred HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCC
Q 024619 80 MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNP 151 (265)
Q Consensus 80 ~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np 151 (265)
++++. ++..++++||+|++++|+|+.+. ..++..|++++.+++ .|++++++++.+++++|++++|+||
T Consensus 106 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP 181 (409)
T PLN02656 106 TQAIDVALSMLARPGANILLPRPGFPIYE----LCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNP 181 (409)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCcHH----HHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCC
Confidence 58886 66777899999999999999885 344557888888875 2688999888888999999999999
Q ss_pred ccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619 152 RQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS----RP----LELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 152 ~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
||.+. ++++|+++|+++|++||+||+|+...+. .+ ......+++.||||.| +.+|+|+||++++
T Consensus 182 tG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~ 256 (409)
T PLN02656 182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTT 256 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEe
Confidence 99995 5889999999999999999999744331 11 1224679999999998 5688999999985
No 105
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.91 E-value=3.3e-23 Score=183.49 Aligned_cols=196 Identities=18% Similarity=0.231 Sum_probs=145.1
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+ +++++++++++.+|.+ +.+++++| ++|+. ++..++++||.|++++|+|+.+.... ...+
T Consensus 63 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~----~~~~ 138 (402)
T PRK06107 63 ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMV----LAND 138 (402)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHH----HHcC
Confidence 4578887 886 5999999999887763 45666666 58886 66678999999999999999886433 3445
Q ss_pred eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHc-CCEEEEeCCcCCCCCc---
Q 024619 119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH-GALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~-~~~li~D~~~~~~~~~--- 184 (265)
.+++.++. .|++++++.+.+++++|++++|+||||.+.+ +++|+++|+++ ++++|+||+|+...+.
T Consensus 139 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~ 218 (402)
T PRK06107 139 GTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP 218 (402)
T ss_pred CEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC
Confidence 56666653 2578899988888999999999999999975 57889999998 9999999999642221
Q ss_pred --C-----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 185 --R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 185 --~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
. +...+..++++|+||.+ +.+|+|.||++.+++.+ +.+...........+...++.+.+.|
T Consensus 219 ~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~~~~~-~~~~~~~~~~~~~~s~~~q~~~~~~l 286 (402)
T PRK06107 219 TPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGPADLI-AAINKLQSQSSSCPSSISQAAAAAAL 286 (402)
T ss_pred CCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecCHHHH-HHHHHHHHhcccCCChHHHHHHHHHh
Confidence 1 11124679999999999 77889999999877544 44555555444555655555544444
No 106
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.91 E-value=8.4e-24 Score=187.80 Aligned_cols=201 Identities=21% Similarity=0.172 Sum_probs=146.3
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCC-CccCCCCCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP-YDYTRSGNP-TRDALESLLAKLDKADRALCFTSGMAALA-AVT 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~y~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~ 87 (265)
..+++|+ +|||+|..++|.+..+..........+. -.+...|.+ ...++++.+++++|.++.+++++|++++. ++.
T Consensus 46 ~~~~~~~-sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~ 124 (410)
T PRK13392 46 RRVTIWC-SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALS 124 (410)
T ss_pred ceEEEEE-CCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence 4589999 8999999998877665432211111111 111122554 58899999999999989999999997764 555
Q ss_pred Hhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHHH
Q 024619 88 HLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI 161 (265)
Q Consensus 88 ~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i 161 (265)
.+. .+|+.|+++...|.++.. .++..|.++..++..|.+.+++.+. +++++|++++|+||+|.+.|+++|
T Consensus 125 ~l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i 200 (410)
T PRK13392 125 TLGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAI 200 (410)
T ss_pred HHhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHH
Confidence 454 478988887777766543 3455778877777666666665543 578999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 162 AEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 162 ~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.++|+++|+++++||+|+.|.++.. ...+.|++++|+||+++++ +|+++++++.+
T Consensus 201 ~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~----GG~~~~~~~~~ 264 (410)
T PRK13392 201 CDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL----GGYIAASADLI 264 (410)
T ss_pred HHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc----cchhhcCHHHH
Confidence 9999999999999999996665311 1124689999999999653 37887665433
No 107
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.91 E-value=1.8e-23 Score=182.23 Aligned_cols=203 Identities=23% Similarity=0.270 Sum_probs=152.3
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA 85 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~ 85 (265)
.+..+++|+ +++++|+.++|.+.................|... |. +...++++.++++++.++.+++++|++++ .+
T Consensus 14 ~g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~ 92 (360)
T TIGR00858 14 DGRRLLNFS-SNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGV 92 (360)
T ss_pred CCceEEecc-cCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHH
Confidence 345799999 6788897665555544322211111122223222 55 46889999999999988899999998665 46
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC----CceEEEEecCCCCccccccHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKI 161 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~----~~~~i~~~~~~np~G~~~~l~~i 161 (265)
+..++++||+|++++|.|+.+.. .++..|.+++.++..|++++++.+++ ++++|++++++|++|.+.++++|
T Consensus 93 l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i 168 (360)
T TIGR00858 93 ISALVGKGDLILSDALNHASLID----GCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQL 168 (360)
T ss_pred HHHhCCCCCEEEEEccccHHHHH----HHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHH
Confidence 67778999999999999988863 34567888888888899999888753 47889999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCcCCCCCcCC---------C-CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 162 AEMAHAHGALLLVDNSIMSPVLSRP---------L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 162 ~~~a~~~~~~li~D~~~~~~~~~~~---------~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.++|+++|+++|+||+|+.+.+... . ..+.|++++|+||+++ +. +|+++.+++.+
T Consensus 169 ~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~---gG~~~~~~~~~ 233 (360)
T TIGR00858 169 VALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SY---GAYVAGSQALI 233 (360)
T ss_pred HHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-cc---CcEEEcCHHHH
Confidence 9999999999999999986654210 1 2367899999999994 44 38887766544
No 108
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.91 E-value=4.1e-23 Score=180.68 Aligned_cols=220 Identities=23% Similarity=0.304 Sum_probs=151.0
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC---CC-ceEEecchH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK---AD-RALCFTSGM-AAL 83 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g---~~-~~i~~~~g~-~al 83 (265)
..+++|+ .++...+. ++.+.... ... . ....|++. |.+ +++.+++++.+.+| .+ +.+++++|+ +++
T Consensus 27 ~~~i~l~-~~~p~~~~-~~~~~~~~-~~~--~--~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i 99 (364)
T PRK07865 27 DGIVDLS-VGTPVDPV-PPVIQEAL-AAA--A--DAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELV 99 (364)
T ss_pred CCEEEcC-CCCCCCCC-CHHHHHHH-HHH--H--hhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHH
Confidence 3578998 55443322 23332222 111 1 12468776 875 59999999988765 32 567777776 888
Q ss_pred HH-HHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc---H
Q 024619 84 AA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD---I 158 (265)
Q Consensus 84 ~~-~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l 158 (265)
.. +..+ +++||.|++++|+|+.+. ..++..|++++.++ +++++.+ +++++|++++|+||||.+.+ +
T Consensus 100 ~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~~~--~~~~l~~---~~~~~v~~~~p~NPtG~~~~~~~~ 170 (364)
T PRK07865 100 AWLPTLLGLGPGDVVVIPELAYPTYE----VGARLAGATVVRAD--SLTELGP---QRPALIWLNSPSNPTGRVLGVDHL 170 (364)
T ss_pred HHHHHHHcCCCCCEEEECCCCcccHH----HHHHhcCCEEEecC--ChhhCCc---ccceEEEEcCCCCCCCccCCHHHH
Confidence 64 4555 689999999999999986 44567788988875 4444432 67899999999999999965 6
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCc----C---C----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLS----R---P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL 227 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~----~---~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~ 227 (265)
++|+++|+++|++||+||+|+...+. . + ...+..++++||||.+ +.+|+|+||++.+++.+ +.....
T Consensus 171 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~i~~~~~~~-~~~~~~ 248 (364)
T PRK07865 171 RKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS-NLAGYRAGFVAGDPALV-AELLEV 248 (364)
T ss_pred HHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc-CCCceeeEEEecCHHHH-HHHHHH
Confidence 88999999999999999999743221 0 1 1224579999999999 56889999998766544 444444
Q ss_pred HHhccCCCChhHHHHHHhccC
Q 024619 228 QNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+.......+...+..+.+.++
T Consensus 249 ~~~~~~~~~~~~q~~~~~~l~ 269 (364)
T PRK07865 249 RKHAGMMVPAPVQAAMVAALG 269 (364)
T ss_pred HHhcCCCcCHHHHHHHHHHhC
Confidence 444444555555554444443
No 109
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.91 E-value=1e-23 Score=186.79 Aligned_cols=228 Identities=19% Similarity=0.148 Sum_probs=155.6
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCc-cCCCCC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYD-YTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVT 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-y~~~g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~ 87 (265)
.++++|+ +|||+|..++|.+..+..........+... ....|. +...++++.+++++|.+..+++++|++|+. ++.
T Consensus 45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~ 123 (402)
T TIGR01821 45 KDVTVWC-SNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA 123 (402)
T ss_pred eeEEEeE-ccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence 5689999 999999999997666543222111111111 111243 568999999999999888999999998875 555
Q ss_pred HhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHHH
Q 024619 88 HLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKI 161 (265)
Q Consensus 88 ~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i 161 (265)
.+.. +++.|+.+...|.+.... ++..|.++..++..|.+++++.+. +++++|++++++||+|.+.|+++|
T Consensus 124 ~l~~~~~~~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i 199 (402)
T TIGR01821 124 TLAKIIPGCVIFSDELNHASMIEG----IRHSGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEI 199 (402)
T ss_pred HhhCCCCCCEEEEcchHhHHHHHH----HHHcCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHH
Confidence 5544 677776665566555433 345677777777777777777664 357899999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH--h
Q 024619 162 AEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A 230 (265)
Q Consensus 162 ~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~--~ 230 (265)
.++|+++|+++|+||+|+.|.++.. ...+.|++++|++|.++++ +|+++.+++ +.+.+..... .
T Consensus 200 ~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~----GG~i~~~~~-~~~~l~~~~~~~~ 274 (402)
T TIGR01821 200 CDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV----GGYIAASRK-LIDAIRSYAPGFI 274 (402)
T ss_pred HHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC----CceeecCHH-HHHHHHHhCcCce
Confidence 9999999999999999986654311 1124689999999999543 378876654 3333332221 1
Q ss_pred ccCCCChhHHHHHHhccC
Q 024619 231 EGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~ 248 (265)
.....++..++.++..++
T Consensus 275 ~t~~~~~~~~aaa~aaL~ 292 (402)
T TIGR01821 275 FTTSLPPAIAAGATASIR 292 (402)
T ss_pred ecCcCCHHHHHHHHHHHH
Confidence 223455555544444443
No 110
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.91 E-value=4.2e-24 Score=186.72 Aligned_cols=215 Identities=23% Similarity=0.305 Sum_probs=151.9
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccC--CCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchH-HH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQP--SATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGM-AA 82 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~-~a 82 (265)
.+|+|+ ++++.+...+|..++...... .......+.|++. |.+ +++++++++.+..| .+..+++++|+ ++
T Consensus 2 ~~I~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~ 80 (363)
T PF00155_consen 2 DVINLG-SNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAA 80 (363)
T ss_dssp TEEESS-SSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHH
T ss_pred CEEEEE-CCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccc
Confidence 479999 888877744444443221111 1122356678877 554 36666666664433 23378888888 56
Q ss_pred HHH-HHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-------CCCHHHHHhhcCC------CceEEEEec
Q 024619 83 LAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-------TCDLDEVASAIGP------WTKLVWVES 147 (265)
Q Consensus 83 l~~-~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~~~~------~~~~i~~~~ 147 (265)
+.. ...+ .++||.|++++|+|+.+. ..++..|++++.++ ..|++++++.+++ ++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~vlv~~P~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~ 156 (363)
T PF00155_consen 81 LFLLLRLLKINPGDTVLVPDPCYPSYI----EAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICN 156 (363)
T ss_dssp HHHHHHHHHSSTTSEEEEEESSSTHHH----HHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEES
T ss_pred hhhhhhcccccccccceecCCcccccc----ccccccCceeeeccccccccccccccccccccccccccccccceeeecc
Confidence 664 4555 679999999999999997 45567788998888 3489999998875 578999999
Q ss_pred CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCC------C--CCC-ccEEEeccccccccCCCceeeEEEe
Q 024619 148 PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRP------L--ELG-ADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 148 ~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~------~--~~~-~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
|+||||.+.+ +++|+++|+++|+++|+||+|+....... . ..+ ..+++.|+||.+ |.+|+|.|++++
T Consensus 157 p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~ 235 (363)
T PF00155_consen 157 PNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVA 235 (363)
T ss_dssp SBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEE
T ss_pred cccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeeccccc-cccccccccccc
Confidence 9999999976 56667779999999999999987666522 1 112 369999999999 778999999999
Q ss_pred echhHHHHHHHHHHhccC
Q 024619 216 KGERLAKELYFLQNAEGS 233 (265)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~ 233 (265)
++ .+.+.+.........
T Consensus 236 ~~-~~~~~l~~~~~~~~~ 252 (363)
T PF00155_consen 236 PP-ELIERLRRFQRSGLS 252 (363)
T ss_dssp EH-HHHHHHHHHHHHTTS
T ss_pred hh-hhhhhhhhccccccc
Confidence 55 444555555544333
No 111
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.91 E-value=1.1e-22 Score=183.78 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=139.9
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhC----CC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC-C
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP-K 116 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g----~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~-~ 116 (265)
..|+.. |.+ +++++++++.+.+| .+ +.|++++|+ +++. ++..+++|||.|++++|.|+.+... ++ .
T Consensus 88 ~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~----~~~~ 163 (496)
T PLN02376 88 ANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRD----LRWR 163 (496)
T ss_pred hccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHH----HHhh
Confidence 346666 776 59999999988766 33 566677765 8886 7788899999999999999999733 33 5
Q ss_pred CCeEEEeecCC-------CHHHHHhhc------CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619 117 TGVVVKRVNTC-------DLDEVASAI------GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS 180 (265)
Q Consensus 117 ~g~~~~~~~~~-------d~~~l~~~~------~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~ 180 (265)
.|++++.++++ +++++++++ ..++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+.
T Consensus 164 ~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~ 243 (496)
T PLN02376 164 TGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAA 243 (496)
T ss_pred CCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence 78899988862 567776542 247899999999999999976 67899999999999999999985
Q ss_pred CCCc-----CC--C----C-----CCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619 181 PVLS-----RP--L----E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244 (265)
Q Consensus 181 ~~~~-----~~--~----~-----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (265)
..+. +. . + .+..+++.||||.| |.+|+|+|+++..++.+.......... ..++...+.++.
T Consensus 244 ~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~ 320 (496)
T PLN02376 244 TVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLA 320 (496)
T ss_pred cccCCCCcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 4321 10 0 0 01235689999999 678999999998766665544333322 224444444433
Q ss_pred hcc
Q 024619 245 RGV 247 (265)
Q Consensus 245 ~~l 247 (265)
..|
T Consensus 321 ~~L 323 (496)
T PLN02376 321 SML 323 (496)
T ss_pred HHh
Confidence 333
No 112
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.91 E-value=2.4e-23 Score=183.42 Aligned_cols=202 Identities=23% Similarity=0.241 Sum_probs=153.0
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AV 86 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~ 86 (265)
+..+++|+ +++++|..++|.+.................|... |.+ .++++++++++++|.+..+++++|++++. ++
T Consensus 32 g~~~id~~-~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~ 110 (385)
T TIGR01825 32 GKEVINLS-SNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVL 110 (385)
T ss_pred CceEEEee-ccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence 46789999 7888898777776554422211111122345444 664 69999999999999888899999987764 77
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHHHH
Q 024619 87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIA 162 (265)
Q Consensus 87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~ 162 (265)
..++++||.|++++|.|+++...+ +..|.++..++..|++++++.+. +++++|++++++|++|.+.|+++|.
T Consensus 111 ~~~~~~gd~vi~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~ 186 (385)
T TIGR01825 111 SALLRKGDIVLSDELNHASIIDGL----RLTKATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIV 186 (385)
T ss_pred HHhCCCCCEEEEEccccHHHHHHH----HhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHH
Confidence 778999999999999998886433 34677777777778888877664 3688999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 163 EMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 163 ~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
++|++||+++|+||+|+.+.+.. ....+.|+++.|+||++++ + +|+++.+++.+
T Consensus 187 ~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~---gG~~~~~~~~~ 249 (385)
T TIGR01825 187 ELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGV-V---GGYAAGHKELI 249 (385)
T ss_pred HHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhc-C---CCEEecCHHHH
Confidence 99999999999999998664431 1234678999999999953 3 48887665443
No 113
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.91 E-value=2.3e-23 Score=184.82 Aligned_cols=200 Identities=19% Similarity=0.145 Sum_probs=145.0
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV 86 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~ 86 (265)
.++++|+ +|||+|..++|.+..+.......... ....++. |. +...++++.+++++|.++.+++++|+++.. ++
T Consensus 46 ~~~~~~~-s~dylgl~~~p~v~~a~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai 123 (407)
T PRK09064 46 REVTVWC-SNDYLGMGQHPKVIEAMIEALDRCGA-GAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATL 123 (407)
T ss_pred ceEEEEE-CCCCcCCCCCHHHHHHHHHHHHHcCC-CCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHH
Confidence 5689999 99999999988766654222111111 1112222 33 579999999999999888999999997764 55
Q ss_pred HHhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619 87 THLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 87 ~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
..+.. +++.|+.+...|.+....+ +..+.++..++..|.+++++.+. +++++|++++++||+|.+.|+++
T Consensus 124 ~~l~~~~~~~~i~~~~~~h~s~~~~~----~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~ 199 (407)
T PRK09064 124 STLAKLIPDCVIFSDELNHASMIEGI----RRSRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAE 199 (407)
T ss_pred HHHhCCCCCCEEEEeCcchHHHHHHH----HHcCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHH
Confidence 54443 6776766766665554332 44566777777778887777764 46889999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCcCCCCCcC---------CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 161 IAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~~~~~~~~~---------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
|.++|+++|+++|+||+|+.|.++. ....+.|++++||||.++ .. +|+++++++.+
T Consensus 200 i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~---GG~~~~~~~~~ 264 (407)
T PRK09064 200 ICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VM---GGYIAGSAALV 264 (407)
T ss_pred HHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-cc---CceEecCHHHH
Confidence 9999999999999999998665431 111246899999999994 43 38887766443
No 114
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.91 E-value=4.1e-23 Score=186.70 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=141.6
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++++++++.+..|.+ +.|++++|+ +++. ++..++ ++||.|++++|+|+.+. ..++..
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~----~~~~~~ 183 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYS----AAITLL 183 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHH----HHHHHc
Confidence 4568888 887 5999999998876543 466666665 8886 566777 79999999999999997 445667
Q ss_pred CeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 118 g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
|.+++.++++ |++++++++.+ +++++++++|+||||.+++ +++|+++|+++|++||+||+|...
T Consensus 184 g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l 263 (481)
T PTZ00377 184 GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQEN 263 (481)
T ss_pred CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhh
Confidence 8888887643 67889888753 7899999999999999987 789999999999999999999753
Q ss_pred CCc------CC------CCC-----CccEEEeccccccccCCCceeeEEEee--chhHHHHHHHHHHhccCCCChhHHHH
Q 024619 182 VLS------RP------LEL-----GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 182 ~~~------~~------~~~-----~~di~~~s~sK~~~g~~g~~~G~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
.+. .. ... ...+++.|+||.+.+.+|+|+||+++. +..+.+.+...+.. ....+...+..
T Consensus 264 ~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~-~~~~~~~~Q~a 342 (481)
T PTZ00377 264 IYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI-NLCSNVVGQLM 342 (481)
T ss_pred ccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe-ecCCChHHHHH
Confidence 331 10 111 135899999997657889999999872 33444444444432 22344444443
Q ss_pred HH
Q 024619 243 CL 244 (265)
Q Consensus 243 ~~ 244 (265)
+.
T Consensus 343 ~~ 344 (481)
T PTZ00377 343 TG 344 (481)
T ss_pred HH
Confidence 33
No 115
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.91 E-value=2.7e-23 Score=179.37 Aligned_cols=176 Identities=21% Similarity=0.239 Sum_probs=127.2
Q ss_pred HHHHHHHHhHhCCCceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhc
Q 024619 58 DALESLLAKLDKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAI 136 (265)
Q Consensus 58 ~~l~~~l~~~~g~~~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~ 136 (265)
..+++.+++++|.++ |++++|+ +++..+. .+.+||+|++++|+|+.+. ..++..|++++.++.++ +++.+
T Consensus 52 ~~Lr~~ia~~~~~~~-I~it~Gs~~al~~~~-~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~---~~~~~ 122 (330)
T PRK05664 52 DGLEAAARAYYGAPQ-LLPVAGSQAAIQALP-RLRAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDEAE---VEAAL 122 (330)
T ss_pred HHHHHHHHHHhCCCC-EEECcCHHHHHHHHH-HccCCCEEEEcCCChHHHH----HHHHHcCCeEEEechhh---Hhhhh
Confidence 677888888888875 5555555 8887553 4689999999999999997 56678899999998654 44444
Q ss_pred CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC-c---CCCCCCccEEEeccccccccCCCce
Q 024619 137 GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL-S---RPLELGADIVMHSATKFIAGHSDVM 209 (265)
Q Consensus 137 ~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~-~---~~~~~~~di~~~s~sK~~~g~~g~~ 209 (265)
++++++++++|+||||.+.+ +++|+++|+++|++||+||+|..... . .....+..++++||||.+ |.+|+|
T Consensus 123 -~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~-gl~GlR 200 (330)
T PRK05664 123 -DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFF-GLAGAR 200 (330)
T ss_pred -cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccc-cCCCcc
Confidence 36788999999999999976 56777788999999999999964322 1 111224569999999999 778899
Q ss_pred eeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 210 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 210 ~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
+||++++++.+ +....... ...++...+..+...|
T Consensus 201 iG~~v~~~~l~-~~~~~~~~--~~~~~~~~~~~~~~~L 235 (330)
T PRK05664 201 LGFVLAEPALL-RALAELLG--PWTVSGPTRWLAQAAL 235 (330)
T ss_pred eEEEEeCHHHH-HHHHHhcC--CCCCCHHHHHHHHHHH
Confidence 99999876544 33332222 2344544444444444
No 116
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.91 E-value=5.6e-23 Score=182.03 Aligned_cols=200 Identities=20% Similarity=0.220 Sum_probs=141.4
Q ss_pred ceeEeeccCCCCCC---CCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHh---CCCceEEecchHH
Q 024619 10 STLLMNFSNEFDPY---GALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLD---KADRALCFTSGMA 81 (265)
Q Consensus 10 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~---g~~~~i~~~~g~~ 81 (265)
+..+++|+ ..++. ...+++.+.... .. .......+.|.+. |.+ +++++++++.+.. ..+.+++++++++
T Consensus 30 ~~~~i~l~-~g~p~~~~~~~~~~~~~~~~-~~-~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~ 106 (401)
T TIGR01264 30 EKPMIKLS-IGDPTVFGNLPTDPEVMQAM-KD-SLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSH 106 (401)
T ss_pred CCCeeecC-CCCCCCcCCCCCCHHHHHHH-HH-HHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHH
Confidence 34678888 54442 222333333322 11 1111223468666 776 4778888776532 2233444444458
Q ss_pred HHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcc
Q 024619 82 ALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQ 153 (265)
Q Consensus 82 al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G 153 (265)
++. ++..++++||+|++++|+|..+. ..++..|++++.++. .|++++++.+.+++++|++++|+||||
T Consensus 107 al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG 182 (401)
T TIGR01264 107 AIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCG 182 (401)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCC
Confidence 886 67778899999999999998886 555778888888764 268899888888899999999999999
Q ss_pred cccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CC--C-CCCccEEEeccccccccCCCceeeEEEeec
Q 024619 154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-----RP--L-ELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 154 ~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~--~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
.+.+ +++|+++|+++|+++|+||+|....+. .. . .....+++.||||.+ +.+|+|+||+++++
T Consensus 183 ~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~ 256 (401)
T TIGR01264 183 SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHD 256 (401)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC-CCccceEEEEEecC
Confidence 9975 789999999999999999999743321 11 1 112368999999998 67899999999875
No 117
>PRK05839 hypothetical protein; Provisional
Probab=99.91 E-value=4.9e-23 Score=180.74 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=141.8
Q ss_pred ceeEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecchH-HH
Q 024619 10 STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSGM-AA 82 (265)
Q Consensus 10 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g~-~a 82 (265)
+..+++|+ .++. +++ ++.+.... ... ......|++. |.+ +++++++++++.+|. + +.|++++|+ ++
T Consensus 23 ~~~~i~l~-~~~p~~~~--~~~~~~a~-~~~---~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~a 95 (374)
T PRK05839 23 EYKGLDLT-IGEPQFET--PKFIQDAL-KNN---AHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREV 95 (374)
T ss_pred CCCeEEcC-CCCCCCCC--CHHHHHHH-HHH---hhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHH
Confidence 45899998 4432 332 22222221 111 1134668877 775 599999999998773 2 567777775 88
Q ss_pred HH-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC-----HHHHHhhcCCCceEEEEecCCCCccc
Q 024619 83 LA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD-----LDEVASAIGPWTKLVWVESPTNPRQQ 154 (265)
Q Consensus 83 l~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d-----~~~l~~~~~~~~~~i~~~~~~np~G~ 154 (265)
+. ++..++ ++||.|+++.|+|+.+. ..++..|++++.++.+. ++.....+ +++++|++++||||||.
T Consensus 96 l~~~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~-~~~k~v~i~nP~NPTG~ 170 (374)
T PRK05839 96 LFNFPQFVLFDKQNPTIAYPNPFYQIYE----GAAIASRAKVLLMPLTKENDFTPSLNEKEL-QEVDLVILNSPNNPTGR 170 (374)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCchhhH----HHHHhcCCEEEEeecccccCCcCCcchhhh-ccccEEEEeCCCCCcCc
Confidence 86 445543 57899999999999997 44577899999988641 11111222 46899999999999999
Q ss_pred ccc---HHHHHHHHHHcCCEEEEeCCcCCCCC----cCC---------CCCCccEEEeccccccccCCCceeeEEEeech
Q 024619 155 ICD---IRKIAEMAHAHGALLLVDNSIMSPVL----SRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 155 ~~~---l~~i~~~a~~~~~~li~D~~~~~~~~----~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
+.+ +++|+++|+++|++||+||+|+.-.. ... ...+..+++.||||.+ +.+|+|+||++.+++
T Consensus 171 ~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii~~~~ 249 (374)
T PRK05839 171 TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIAGDAS 249 (374)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEecCHH
Confidence 975 68889999999999999999974221 111 1224679999999998 678999999998765
Q ss_pred hHHHHHHHHH
Q 024619 219 RLAKELYFLQ 228 (265)
Q Consensus 219 ~~~~~~~~~~ 228 (265)
.+ +.+....
T Consensus 250 ~~-~~~~~~~ 258 (374)
T PRK05839 250 IL-KKYKAYR 258 (374)
T ss_pred HH-HHHHHHH
Confidence 44 4343333
No 118
>PRK08363 alanine aminotransferase; Validated
Probab=99.91 E-value=1e-22 Score=180.17 Aligned_cols=165 Identities=21% Similarity=0.218 Sum_probs=127.8
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC--C-ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA--D-RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~--~-~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+ +++++++++.+.+|. + +.+++++| ++++. ++..++++||.|++++|+|+.+. ..++..|
T Consensus 63 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~----~~~~~~g 138 (398)
T PRK08363 63 HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYT----GLVKFYG 138 (398)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchH----HHHHHcC
Confidence 3467655 765 588888888877653 2 34555555 58886 66778999999999999999996 4446677
Q ss_pred eEEEee-cC------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRV-NT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~-~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.+ +. .|++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 139 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~ 218 (398)
T PRK08363 139 GVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV 218 (398)
T ss_pred CEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCccc
Confidence 777766 32 3688899888888999999999999999976 899999999999999999999743221
Q ss_pred ---CCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619 185 ---RPLELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 185 ---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
........+++.||||++ +.+|+|.||+++
T Consensus 219 ~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~ 251 (398)
T PRK08363 219 SPGSLTKDVPVIVMNGLSKVY-FATGWRLGYIYF 251 (398)
T ss_pred CHHHcCcCCcEEEEecchhcc-CCccceEEEEEE
Confidence 111223578899999998 567899999997
No 119
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.91 E-value=5.9e-23 Score=181.97 Aligned_cols=165 Identities=17% Similarity=0.139 Sum_probs=126.4
Q ss_pred CCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEE--ecchHHHHHH-H---HHhcCCCCEEEEcCCCCCChHHHHHh
Q 024619 45 GPYDYTRS-GNP-TRDALESLLAKLDK----ADRALC--FTSGMAALAA-V---THLLGTGEEIVAGDDLYGGTDRLLSR 112 (265)
Q Consensus 45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~--~~~g~~al~~-~---~~~~~~g~~viv~~~~~~~~~~~~~~ 112 (265)
....|++. |.+ +|+++.+++.+..+ .+++++ +.++++|+.. + ..++++||+|++++|+|+.+. .
T Consensus 64 ~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~----~ 139 (404)
T PTZ00376 64 LDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHV----N 139 (404)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHH----H
Confidence 34779888 887 59999998876543 233332 4444577643 2 366899999999999999997 5
Q ss_pred hcCCCCeEEEeecC---C----CHHHHHhhcC---CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC
Q 024619 113 VTPKTGVVVKRVNT---C----DLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 113 ~~~~~g~~~~~~~~---~----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~ 179 (265)
.++..|++++.+++ + |++.+++++. ++++++++++||||||.+.+ +++|+++|++||++||+||+|.
T Consensus 140 ~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~ 219 (404)
T PTZ00376 140 IFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQ 219 (404)
T ss_pred HHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhc
Confidence 66788999999987 2 6888888874 44678888999999999975 6888999999999999999997
Q ss_pred CCCCcC-----------CCCCCccEEEeccccccccCCCceeeEEE
Q 024619 180 SPVLSR-----------PLELGADIVMHSATKFIAGHSDVMAGVLA 214 (265)
Q Consensus 180 ~~~~~~-----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~ 214 (265)
...+.. ....+..++++||||.+ +.+|+|.||++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRvG~~~ 264 (404)
T PTZ00376 220 GFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERIGALH 264 (404)
T ss_pred CccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-cccccccceEE
Confidence 444321 11123579999999999 77899999984
No 120
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.91 E-value=1.3e-22 Score=177.07 Aligned_cols=221 Identities=21% Similarity=0.266 Sum_probs=150.4
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchH-HH
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGM-AA 82 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~a 82 (265)
...+++|+ .++...+. +|.+.... ... . ....|++. |.+ +++++++++.+.+|.+ +.+++++|+ ++
T Consensus 20 ~~~~i~l~-~~~p~~~~-~~~~~~~~-~~~--~--~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~ 92 (357)
T TIGR03539 20 PDGIVDLS-VGTPVDPV-PPLIRAAL-AAA--A--DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKEL 92 (357)
T ss_pred CCCeEEcc-CCCCCCCC-CHHHHHHH-HHH--H--hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHH
Confidence 45689999 55443222 23333321 111 1 23568776 776 5999999998876532 566677765 88
Q ss_pred HHH-HHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccccc---
Q 024619 83 LAA-VTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICD--- 157 (265)
Q Consensus 83 l~~-~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~--- 157 (265)
+.. +..+ +++||.|++++|+|+.+. ..++..|.+++.++ +++++. .+++++|++++|+||||.+.+
T Consensus 93 i~~~~~~l~~~~gd~Vl~~~p~y~~~~----~~~~~~g~~~~~v~--~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~ 163 (357)
T TIGR03539 93 VAWLPTLLGLGPGDTVVIPELAYPTYE----VGALLAGATPVAAD--DPTELD---PVGPDLIWLNSPGNPTGRVLSVDE 163 (357)
T ss_pred HHHHHHHHcCCCCCEEEECCCCcHHHH----HHHHhcCCEEeccC--ChhhcC---ccCccEEEEeCCCCCcCccCCHHH
Confidence 864 4555 699999999999998886 33466788888775 444433 357899999999999999975
Q ss_pred HHHHHHHHHHcCCEEEEeCCcCCCCCc-------CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619 158 IRKIAEMAHAHGALLLVDNSIMSPVLS-------RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 226 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~~~~~~~~~-------~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~ 226 (265)
+++|+++|+++|+++|+||+|+.-.+. .+ ...+..++++||||.+ +.+|+|+|+++++++.+ +....
T Consensus 164 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~R~G~~i~~~~~~-~~~~~ 241 (357)
T TIGR03539 164 LRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAGYRAGFVAGDPALV-AELLT 241 (357)
T ss_pred HHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc-CCCceeEEEEecCHHHH-HHHHH
Confidence 678999999999999999999632211 01 1224579999999999 56789999998766544 44444
Q ss_pred HHHhccCCCChhHHHHHHhccC
Q 024619 227 LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.+.......+...+..+...++
T Consensus 242 ~~~~~~~~~~~~~q~~~~~~l~ 263 (357)
T TIGR03539 242 VRKHAGLMVPAPVQAAMVAALG 263 (357)
T ss_pred HHhhcccCCCHHHHHHHHHHcC
Confidence 4444444455555444444443
No 121
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.91 E-value=4.6e-23 Score=182.83 Aligned_cols=226 Identities=20% Similarity=0.166 Sum_probs=156.4
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA-AV 86 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~ 86 (265)
.++++|+ +|||+|+.++|.+..+..........+ ..-++. |. +..+++++.+++++|.+..++++||++|+. ++
T Consensus 45 ~~~~~~~-sn~ylgl~~~p~v~~a~~~~~~~~~~~-~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai 122 (406)
T PRK13393 45 REVTVWC-SNDYLGMGQHPAVLAAMHEALDTCGAG-AGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAAL 122 (406)
T ss_pred ccEEEee-cccccCCCCCHHHHHHHHHHHHHcCCC-CcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHH
Confidence 5799999 999999998886665542221111111 111222 44 468999999999999999999999998875 44
Q ss_pred HHhcC--CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619 87 THLLG--TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 87 ~~~~~--~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
..+.. +|+.|+.+...|++....+ +..|.+++.++..|++++++.+. +++++|++++++|++|.+.|+++
T Consensus 123 ~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~ 198 (406)
T PRK13393 123 STLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAE 198 (406)
T ss_pred HHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHH
Confidence 44544 6887777777777666444 34567777787778777776653 36789999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh-
Q 024619 161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA- 230 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~- 230 (265)
|.++|+++|+++++||+|+.|.++.. ...+.|++++|++|.++.+ +|+++++++ +.+.+......
T Consensus 199 i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~----GG~~~~~~~-~~~~l~~~~~~~ 273 (406)
T PRK13393 199 ICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM----GGYITGSAA-LCDFIRSFASGF 273 (406)
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc----CceeeCCHH-HHHHHHHhCcCc
Confidence 99999999999999999986665311 1123589999999999543 478876554 33433332221
Q ss_pred -ccCCCChhHHHHHHhcc
Q 024619 231 -EGSGLAPFDCWICLRGV 247 (265)
Q Consensus 231 -~~~~~~~~~~~~~~~~l 247 (265)
.....++..++.+...+
T Consensus 274 ~~t~~~~p~~~aa~~aaL 291 (406)
T PRK13393 274 IFTTSLPPAVAAGALASV 291 (406)
T ss_pred eecCccCHHHHHHHHHHH
Confidence 23344554444433333
No 122
>PLN02822 serine palmitoyltransferase
Probab=99.91 E-value=3.3e-23 Score=186.55 Aligned_cols=200 Identities=15% Similarity=0.176 Sum_probs=150.8
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccC--CC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYT--RS--GN-PTRDALESLLAKLDKADRALCFTSGMAAL- 83 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al- 83 (265)
+..+++|+ +++|+|...+|.+.......... .+..|+ +. |. +...++++.++++++.++.+++++|..++
T Consensus 108 G~~~id~~-s~~~lgl~~~~~i~ea~~~al~~---~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~ 183 (481)
T PLN02822 108 GKDVVNFA-SANYLGLIGNEKIKESCTSALEK---YGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIF 183 (481)
T ss_pred CceEEEeE-CCCcCCCCCCHHHHHHHHHHHHH---hCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHH
Confidence 46799999 99999999888776654332211 122222 22 33 46999999999999998889999887665
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC---------CCc-eEEEEecCCCCcc
Q 024619 84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---------PWT-KLVWVESPTNPRQ 153 (265)
Q Consensus 84 ~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~---------~~~-~~i~~~~~~np~G 153 (265)
.++.+++++||.|+++...|.++. ..++..+.+++.++..|.++++..+. +++ ++|+++++++++|
T Consensus 184 sai~a~~~~gd~Ii~d~~~H~s~~----~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G 259 (481)
T PLN02822 184 SVIPAFCKKGDIIVADEGVHWGIQ----NGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSG 259 (481)
T ss_pred HHHHHhCCCCCEEEEeCCccHHHH----HHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCC
Confidence 578889999999998877665554 23345577888998887766655442 234 7999999999999
Q ss_pred ccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-------C---CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-------L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 154 ~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-------~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
.+.|+++|+++|++||+++|+||+|+.+.++.. . ..++|++++||+|.++ .. +|+++++++.+.
T Consensus 260 ~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~---GG~i~g~~~ii~ 333 (481)
T PLN02822 260 QIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TE---GGFCTGSARVVD 333 (481)
T ss_pred CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hC---CeEEEcCHHHHH
Confidence 999999999999999999999999997766421 1 1257899999999994 44 388887765443
No 123
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=1.9e-23 Score=183.10 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=143.9
Q ss_pred CCccCCCCCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619 46 PYDYTRSGNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119 (265)
Q Consensus 46 ~~~y~~~g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~ 119 (265)
...|+..|.+ +++++++++.+.+|.+ +.+++++|+ +++. ++..++++||.|+++.|+|+.+. ..++..|.
T Consensus 59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~----~~~~~~g~ 134 (368)
T PRK03317 59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHP----IIARGTHT 134 (368)
T ss_pred hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHhcCC
Confidence 3567655765 5888888888776542 567777776 8886 66778899999999999999886 44567788
Q ss_pred EEEeecCC-----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---CCC---
Q 024619 120 VVKRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RPL--- 187 (265)
Q Consensus 120 ~~~~~~~~-----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~~~--- 187 (265)
+++.++.. |++++++++. +++++|++++|+||||.+.+.+++.++++..++++|+||+|+..... ...
T Consensus 135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~ 214 (368)
T PRK03317 135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL 214 (368)
T ss_pred eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence 88877632 7899998886 57889999999999999999999999999999999999999743211 111
Q ss_pred -CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 188 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 188 -~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
..+..+++.||||.+ |.+|+|+|+++++++.+ +.+.... .....++..+..+...++
T Consensus 215 ~~~~~~i~~~SfSK~~-g~~GlRiG~~~~~~~~~-~~l~~~~--~~~~~s~~~~~a~~~~l~ 272 (368)
T PRK03317 215 PEYPRLVVSRTMSKAF-AFAGGRLGYLAAAPAVV-DALRLVR--LPYHLSAVTQAAARAALR 272 (368)
T ss_pred HhCCCEEEEEechhhh-ccchhhhhhhhCCHHHH-HHHHhcC--CCCCCCHHHHHHHHHHhh
Confidence 123468999999999 55689999999876544 3333222 234455555555444444
No 124
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.90 E-value=3.2e-22 Score=177.00 Aligned_cols=173 Identities=25% Similarity=0.363 Sum_probs=130.2
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|.+. |.+ +++++++++.. .| .+++++++++++++. ++..++++||+|++++|+|+.+. ..++..|
T Consensus 59 ~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~----~~~~~~g 133 (397)
T PRK07568 59 VLAYSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYN----GFATSAG 133 (397)
T ss_pred CcCcCCCCCCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHH----HHHHHcC
Confidence 4567776 775 47888877763 32 234444445568886 66677899999999999998876 4456778
Q ss_pred eEEEeecCC--------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---
Q 024619 119 VVVKRVNTC--------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS--- 184 (265)
Q Consensus 119 ~~~~~~~~~--------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~--- 184 (265)
++++.++.+ +++++++++.+++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+.
T Consensus 134 ~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 213 (397)
T PRK07568 134 VKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLK 213 (397)
T ss_pred CEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCC
Confidence 888887752 468898888888999999999999999974 789999999999999999999743221
Q ss_pred --CCC---C-CCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619 185 --RPL---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 224 (265)
Q Consensus 185 --~~~---~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~ 224 (265)
... . .+..+++.|+||.+ +.+|+|+|++++++..+.+..
T Consensus 214 ~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~~~ 258 (397)
T PRK07568 214 YTSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIAAA 258 (397)
T ss_pred ccChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHHHH
Confidence 111 1 24569999999999 667899999988654554433
No 125
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=2e-23 Score=182.31 Aligned_cols=184 Identities=19% Similarity=0.279 Sum_probs=136.6
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CH
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DL 129 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~ 129 (265)
..++++.++++++.+ +.+++++|+ +++. ++..++++||.|++++|+|+.+. ..++..|.+++.++.+ |+
T Consensus 66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~d~ 141 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYR----HNAIIEGAEVREVPLKDGGHDL 141 (359)
T ss_pred HHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEEecCCCCcCH
Confidence 455666666677765 466666665 8886 56678899999999999999886 4446678888888754 78
Q ss_pred HHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc----CC----CCCCccEEEeccc
Q 024619 130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LELGADIVMHSAT 199 (265)
Q Consensus 130 ~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s~s 199 (265)
+++++.+.++++++++++|+||||.+.+.+++.++++. +|+++|+||+|...... .. ...+.++++.|||
T Consensus 142 ~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 221 (359)
T PRK03158 142 EAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFS 221 (359)
T ss_pred HHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEech
Confidence 99998888889999999999999999999998888887 59999999999754332 11 1235679999999
Q ss_pred cccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|.+ |.+|+|+||++++++.+ +.+..... ....+...+..+...++
T Consensus 222 K~~-g~~GlRiG~~v~~~~~~-~~~~~~~~--~~~~~~~~q~~~~~~l~ 266 (359)
T PRK03158 222 KAY-GLAALRVGYGIASEELI-EKLNIARP--PFNTTRIAQYAAIAALE 266 (359)
T ss_pred Hhh-cCcchhhehhcCCHHHH-HHHHHhcC--CCCCCHHHHHHHHHHhc
Confidence 999 67889999999877554 33333222 23455555555444444
No 126
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.90 E-value=3.1e-22 Score=178.80 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=132.4
Q ss_pred cCCC-CCh-hHHHHHHHHHhHhCC----C-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619 49 YTRS-GNP-TRDALESLLAKLDKA----D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119 (265)
Q Consensus 49 y~~~-g~~-~~~~l~~~l~~~~g~----~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~ 119 (265)
|... |.+ +++++++++.+.+|. + +.|++++|+ +++. ++..+++|||.|+++.|.|+.+...+ ....|+
T Consensus 91 y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~---~~~~g~ 167 (447)
T PLN02607 91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL---RWRTGV 167 (447)
T ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH---HhcCCc
Confidence 5555 776 599999999987662 2 466677775 8886 66778999999999999999997433 224678
Q ss_pred EEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC
Q 024619 120 VVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL 183 (265)
Q Consensus 120 ~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~ 183 (265)
+++.++.+ |++++++++. .++++|++++|+||||.+++ +++|+++|+++|+.+|+||+|+...+
T Consensus 168 ~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f 247 (447)
T PLN02607 168 KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVF 247 (447)
T ss_pred EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence 88887643 6788887775 37899999999999999976 78999999999999999999985433
Q ss_pred cC-----C------C---C-CCccEEEeccccccccCCCceeeEEEeechhHHHHH
Q 024619 184 SR-----P------L---E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 224 (265)
Q Consensus 184 ~~-----~------~---~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~ 224 (265)
.. . . . .+..+++.|+||.| |.+|+|+|+++..++.+....
T Consensus 248 ~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g~~GlRvG~ivs~n~~l~~~~ 302 (447)
T PLN02607 248 SASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-GLPGFRVGTIYSYNDKVVTTA 302 (447)
T ss_pred CCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-CCCcceEEEEEEcCHHHHHHH
Confidence 21 0 0 1 24568999999999 668899999998655554433
No 127
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=2.9e-23 Score=182.49 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=136.5
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D 128 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d 128 (265)
..++++.+++++|.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..|++++.++.+ |
T Consensus 88 ~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~~~~~~~~d 163 (380)
T PLN03026 88 SRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVPRTPDFSLD 163 (380)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcC
Confidence 567888888888866 567777776 8886 56677899999999999998775 4456689999888753 6
Q ss_pred HHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEecccccc
Q 024619 129 LDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFI 202 (265)
Q Consensus 129 ~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~ 202 (265)
++++++++ .+++++|++++|+||||.+.+.+++.++++.. +++|+||+|...... .....+..+++.||||.+
T Consensus 164 ~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~ 242 (380)
T PLN03026 164 VPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRA 242 (380)
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhh
Confidence 88999888 67899999999999999999999999999865 899999999633211 111235679999999999
Q ss_pred ccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 203 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
|.+|+|.||++++++.+ +.+...+. ...++......+...|
T Consensus 243 -glaGlRiGy~~~~~~~i-~~l~~~~~--~~~~~~~~q~aa~~aL 283 (380)
T PLN03026 243 -GLAGLRVGYGAFPLSII-EYLWRAKQ--PYNVSVAAEVAACAAL 283 (380)
T ss_pred -cCccccceeeecCHHHH-HHHHHhcC--CCCCCHHHHHHHHHHh
Confidence 78899999999877554 33332222 2344544444444444
No 128
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.90 E-value=2e-22 Score=178.51 Aligned_cols=169 Identities=18% Similarity=0.294 Sum_probs=123.4
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhH-hCCCceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe--
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKL-DKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV-- 119 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~-~g~~~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~-- 119 (265)
...|.+. |.+ +++++++++.+. ... +.|++++|+ +++..+..++.+||+|++++|+|+.+. ..++..|+
T Consensus 68 ~~~Y~p~~g~~~lr~aia~~~~~~~~~~-d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~----~~~~~~g~~~ 142 (402)
T TIGR03542 68 FRGYGPEQGYPFLREAIAENDYRGRIDP-EEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYV----DSNVMAGRAG 142 (402)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhcCCCH-HHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchH----HHHHHcCCcc
Confidence 3568666 776 488888765332 233 456666665 888766777889999999999999997 44466677
Q ss_pred ---------EEEeecCCCHHHHHhhc--CCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-
Q 024619 120 ---------VVKRVNTCDLDEVASAI--GPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS- 184 (265)
Q Consensus 120 ---------~~~~~~~~d~~~l~~~~--~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~- 184 (265)
+++.++.+..+.+...+ .+++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+.....
T Consensus 143 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~ 222 (402)
T TIGR03542 143 VLDDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDP 222 (402)
T ss_pred ccccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCC
Confidence 88877754222222112 257899999999999999987 789999999999999999999743321
Q ss_pred ---CCC-----CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 185 ---RPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 185 ---~~~-----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.+. ..+..++++||||.+ |.+|+|.||++++++.+
T Consensus 223 ~~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i~~~~l~ 265 (402)
T TIGR03542 223 SLPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTVVPKELT 265 (402)
T ss_pred CCCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEEecHHHh
Confidence 111 123568899999999 67889999999987654
No 129
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=5.3e-23 Score=179.07 Aligned_cols=183 Identities=16% Similarity=0.226 Sum_probs=136.8
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D 128 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d 128 (265)
..++++.++++++.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..|.+++.++.+ |
T Consensus 61 ~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~d 136 (351)
T PRK14807 61 AEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPVKLKEDYTYD 136 (351)
T ss_pred HHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEeecCCCCCCC
Confidence 467778888888875 566777776 7776 66778899999999999998775 4557788898888753 6
Q ss_pred HHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---C-CCCCCccEEEeccccccc
Q 024619 129 LDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---R-PLELGADIVMHSATKFIA 203 (265)
Q Consensus 129 ~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~-~~~~~~di~~~s~sK~~~ 203 (265)
++++++++.+ ++++|++++|+||||.+.+.+++.+++++++.++|+||+|....-. . ....+..++++||||.+
T Consensus 137 ~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~- 215 (351)
T PRK14807 137 VGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAF- 215 (351)
T ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhc-
Confidence 8899998874 8999999999999999999999999999988999999999632111 1 11235679999999999
Q ss_pred cCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 204 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 204 g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
|.+|+|.||++.+++.+ +.+...+. ....+...+..+.+.+
T Consensus 216 ~~~GlRiG~~v~~~~~~-~~~~~~~~--~~~~~~~~q~~~~~~l 256 (351)
T PRK14807 216 GLAGLRVGYAVANENIL-KYLNLVKS--PYNINSLSQVIALKVL 256 (351)
T ss_pred ccchhceeeeecCHHHH-HHHHHccC--CCCcCHHHHHHHHHHH
Confidence 77899999999866544 43333222 2334444444443333
No 130
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.90 E-value=8.3e-23 Score=170.30 Aligned_cols=201 Identities=20% Similarity=0.211 Sum_probs=155.5
Q ss_pred eEeeccCCCCC-CCCCCCCeeeccccccCCCCCCCCCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchHHHHH
Q 024619 12 LLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALA 84 (265)
Q Consensus 12 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~~al~ 84 (265)
++|.++ ..|. ....-+....+.++-.+....+..++|+++ |.+ .|+++++++.+-.. +++++++++..+|+.
T Consensus 62 ~iipl~-~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 62 PILPLG-HGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred eeccCC-CCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 777777 4443 222222333333333344456778899999 886 49999888765543 345555555569997
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
++.++.+||..|+++.|+|+-|. ..++..|+++++.++. |++.++.+++++|.++++.+|+||+|.++
T Consensus 141 ~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVy 216 (447)
T KOG0259|consen 141 LAISSLANPGANILLPRPGFPLYD----TRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVY 216 (447)
T ss_pred HHHHHhcCCCCceecCCCCCchHH----HhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccc
Confidence 78888999999999999999996 6778899999999853 89999999999999999999999999996
Q ss_pred ---cHHHHHHHHHHcCCEEEEeCCcCCCCCcC----CC----CCCccEEEeccccccccCCCceeeEEEeech
Q 024619 157 ---DIRKIAEMAHAHGALLLVDNSIMSPVLSR----PL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 157 ---~l~~i~~~a~~~~~~li~D~~~~~~~~~~----~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
.|++|++.|+++++++|.||+|+...+++ ++ ..-..+.++|.||-|. -||+|.||++..+.
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~-VPGWRlGWi~~hD~ 288 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWI-VPGWRLGWIALHDP 288 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccc-cCCceeeeEEEecc
Confidence 48999999999999999999998666541 11 1235799999999774 46899999998874
No 131
>PRK09265 aminotransferase AlaT; Validated
Probab=99.90 E-value=3e-22 Score=177.50 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=127.6
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHh--CCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLD--KAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~--g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|++. |.+ +++++++++.... +.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..|
T Consensus 65 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~----~~~~~~g 140 (404)
T PRK09265 65 AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWT----AAVSLSG 140 (404)
T ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChH----HHHHHcC
Confidence 3568777 765 5888888876543 333 456666665 7775 66778899999999999999887 3445567
Q ss_pred eEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.++. .|++++++.+.+++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|+...+.
T Consensus 141 ~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 220 (404)
T PRK09265 141 GKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVH 220 (404)
T ss_pred CEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCc
Confidence 77776643 2688899988888999999999999999988 899999999999999999998743221
Q ss_pred -CC---CCCCccEEEeccccccccCCCceeeEEEee
Q 024619 185 -RP---LELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 185 -~~---~~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
.. ......+++.||||.+ +.+|+|+||++.+
T Consensus 221 ~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~ 255 (404)
T PRK09265 221 ISIASLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLS 255 (404)
T ss_pred CCHHHcCCCceEEEEecchhhc-cCcccceEEEEEe
Confidence 11 1112468899999999 6788999999964
No 132
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.90 E-value=5.6e-22 Score=175.75 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=127.5
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~ 119 (265)
..|.+. |.+ +++++++++....+. +++++++++++++. ++..++++||+|++++|+|+.+. ..++..|+
T Consensus 67 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~ 142 (403)
T TIGR01265 67 NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYD----TRAAFSGL 142 (403)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCC
Confidence 467655 665 477777777654332 34555555569986 66777899999999999998875 44567788
Q ss_pred EEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-----
Q 024619 120 VVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS----- 184 (265)
Q Consensus 120 ~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~----- 184 (265)
+++.++. .|++++++++.++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+.
T Consensus 143 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 222 (403)
T TIGR01265 143 EVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI 222 (403)
T ss_pred EEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCcc
Confidence 8887764 2689999988888999999999999999975 799999999999999999999754332
Q ss_pred CCC---CCCccEEEeccccccccCCCceeeEEEeec
Q 024619 185 RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 185 ~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
... .....++++||||.| +.+|+|.||+++++
T Consensus 223 ~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~ 257 (403)
T TIGR01265 223 PMASFASIVPVLSLGGISKRW-VVPGWRLGWIIIHD 257 (403)
T ss_pred chhhhccCCcEEEEeeccccc-CCCcceEEEEEEeC
Confidence 111 112469999999998 56789999998853
No 133
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.90 E-value=2.7e-23 Score=181.60 Aligned_cols=221 Identities=17% Similarity=0.240 Sum_probs=152.0
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEe-cchH-HHHH-HH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCF-TSGM-AALA-AV 86 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~-~~g~-~al~-~~ 86 (265)
..+++|+...+++++ +|.+.... ... .. ....|+.. ...++++.+++++|.+ +.+++ ++|+ +++. ++
T Consensus 34 ~~~i~l~~~~~~~~~--~~~~~~~~-~~~-~~--~~~~y~~~---~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~ 104 (361)
T PRK00950 34 ESIIKLGSNENPLGP--SPKAVEAI-EKE-LS--KIHRYPEP---DAPELREALSKYTGVPVENIIVGGDGMDEVIDTLM 104 (361)
T ss_pred cceEEccCCCCCCCC--CHHHHHHH-HHH-HH--hhcCCCCC---CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHH
Confidence 378999933355663 33332221 111 11 12234433 2377888888888875 34555 7786 6775 55
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHH
Q 024619 87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKI 161 (265)
Q Consensus 87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i 161 (265)
..++++||.|++++|+|+.+. ..++..|++++.++. .|++++++.+.++++++++++|+||||.+.+.+++
T Consensus 105 ~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l 180 (361)
T PRK00950 105 RTFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDI 180 (361)
T ss_pred HHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHH
Confidence 667899999999999998775 445677888888863 36889998888889999999999999999999999
Q ss_pred HHHHHHcCCEEEEeCCcCCCCCcC--C--CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCCh
Q 024619 162 AEMAHAHGALLLVDNSIMSPVLSR--P--LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 237 (265)
Q Consensus 162 ~~~a~~~~~~li~D~~~~~~~~~~--~--~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 237 (265)
.++|+++|+++|+||+|....... . ...+..++++|+||.+ |.+|+|.|+++++++.+ +.+..... ...++.
T Consensus 181 ~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~-~~~~~~~~--~~~~~~ 256 (361)
T PRK00950 181 RKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVPEWLI-DYYMRAKT--PFSLTR 256 (361)
T ss_pred HHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCCHHHH-HHHHHhcC--CCCCCH
Confidence 999999999999999996432110 1 1224568999999999 67889999999876544 32322222 223444
Q ss_pred hHHHHHHhccC
Q 024619 238 FDCWICLRGVK 248 (265)
Q Consensus 238 ~~~~~~~~~l~ 248 (265)
.....+...++
T Consensus 257 ~~~~~a~~~l~ 267 (361)
T PRK00950 257 LSQAAAIAALS 267 (361)
T ss_pred HHHHHHHHHhc
Confidence 44444444444
No 134
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.90 E-value=4.2e-23 Score=180.79 Aligned_cols=221 Identities=17% Similarity=0.239 Sum_probs=153.2
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~ 87 (265)
..+++|+...+++|+ +|.+......... ....|+..+ ..++++.++++++.+ +.+++++|+ +++. ++.
T Consensus 32 ~~~i~l~~~~~~~~~--~~~~~~a~~~~~~----~~~~y~~~~---~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 32 ADIIKLASNENPLGP--SPKAIEAIRAAAD----ELHRYPDGS---GFELKAALAEKFGVDPERIILGNGSDEILELLAR 102 (367)
T ss_pred CceEEecCCCCCCCC--CHHHHHHHHHHHH----hhcCCCCCc---HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 468999933356763 3433332211111 123455432 357888888888876 567777776 7776 556
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
.++++||.|++++|+|..+. ..++..|.+++.++.+ |++++++.+.+++++|++++|+||||.+.+.+++.+
T Consensus 103 ~l~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 178 (367)
T PRK02731 103 AYLGPGDEVIYSEHGFAVYP----IAAQAVGAKPVEVPAKDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVER 178 (367)
T ss_pred HhcCCCCEEEEecCCHHHHH----HHHHHcCCeEEEecccCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHH
Confidence 77899999999999997765 3346688999888753 789999999888999999999999999999999999
Q ss_pred HHHHc--CCEEEEeCCcCCCCCcC----C----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccC
Q 024619 164 MAHAH--GALLLVDNSIMSPVLSR----P----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS 233 (265)
Q Consensus 164 ~a~~~--~~~li~D~~~~~~~~~~----~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~ 233 (265)
+++.+ |+++|+||+|....... . ...+..++++|+||.+ |.+|+|+||++++++.+ +.+..... ..
T Consensus 179 l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~-~~l~~~~~--~~ 254 (367)
T PRK02731 179 FLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAPPEII-DALNRVRQ--PF 254 (367)
T ss_pred HHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCCHHHH-HHHHHccC--CC
Confidence 88875 89999999986443211 1 1124578999999999 67889999999877544 32322221 22
Q ss_pred CCChhHHHHHHhccC
Q 024619 234 GLAPFDCWICLRGVK 248 (265)
Q Consensus 234 ~~~~~~~~~~~~~l~ 248 (265)
..+...+..+.+.++
T Consensus 255 ~~~~~~~~~a~~~l~ 269 (367)
T PRK02731 255 NVNSLALAAAVAALD 269 (367)
T ss_pred CCCHHHHHHHHHHhC
Confidence 344455555444444
No 135
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.90 E-value=1.5e-22 Score=176.92 Aligned_cols=163 Identities=21% Similarity=0.220 Sum_probs=134.7
Q ss_pred CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
+.|..+++++.+++++|.+++++++++++++. ++..++++||+|+++.++|.+.. ..++..|++++.++.+
T Consensus 42 ~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~----~~~~~~g~~~~~v~~~~~~~ 117 (361)
T cd06452 42 EKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSY----VAAERAGLNVREVPNTGHPE 117 (361)
T ss_pred cCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHH----HHHHhcCCEEEEEecCCCCC
Confidence 34679999999999999977777666778886 67778899999999999887765 3457788999888643
Q ss_pred ---CHHHHHhhcC-------CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEe
Q 024619 128 ---DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMH 196 (265)
Q Consensus 128 ---d~~~l~~~~~-------~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~ 196 (265)
|++++++++. +++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+... .....+.|++++
T Consensus 118 ~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~ 197 (361)
T cd06452 118 YHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVG 197 (361)
T ss_pred cccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEe
Confidence 6788888775 37899999999999999999999999999999999999999987653 344567899999
Q ss_pred ccccccccCCCceeeEEEeechhHH
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
|+||+++++. ++|+++++++.+.
T Consensus 198 s~~K~l~~~~--~~G~l~~~~~~~~ 220 (361)
T cd06452 198 SGHKSMAASA--PIGVLATTEEWAD 220 (361)
T ss_pred cCCccccCCC--CeEEEEECHHHHH
Confidence 9999996543 5799988765543
No 136
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.90 E-value=5.4e-23 Score=179.77 Aligned_cols=190 Identities=20% Similarity=0.259 Sum_probs=135.6
Q ss_pred ccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619 48 DYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124 (265)
Q Consensus 48 ~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (265)
.|+..|. .++++.+++++|.+ +.+++++|+ +++. ++..++++||.|++++|+|+.+. ..++..|.+++.+
T Consensus 60 ~Yp~~g~---~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~v~~v 132 (366)
T PRK01533 60 LYPDGGA---TTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYR----HHAIIEGCEVKEV 132 (366)
T ss_pred cCCCCCH---HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCEEEEe
Confidence 3654454 34555556666766 567777776 8886 66778899999999999999886 4556789999988
Q ss_pred cCC----CHHHHHhhcCCCceEEEEecCCCCccccccHHH---HHHHHHHcCCEEEEeCCcCCCCCc--------CCCCC
Q 024619 125 NTC----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRK---IAEMAHAHGALLLVDNSIMSPVLS--------RPLEL 189 (265)
Q Consensus 125 ~~~----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~---i~~~a~~~~~~li~D~~~~~~~~~--------~~~~~ 189 (265)
+.+ |++++++++.++++++++++|+||||.+.+.++ |+++|++++ ++|+||+|...... .....
T Consensus 133 ~~~~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~ 211 (366)
T PRK01533 133 ALNNGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKH 211 (366)
T ss_pred ecCCCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccC
Confidence 764 789999988888999999999999999987655 555555554 67789998632211 11123
Q ss_pred CccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619 190 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
+..+++.||||.+ |.+|+|.||++++++.+ +.+.... .....+...+..+...|+.
T Consensus 212 ~~vi~~~SfSK~~-~l~GlRiG~~i~~~~~~-~~l~~~~--~~~~~~~~~q~aa~~~l~~ 267 (366)
T PRK01533 212 KNILVLRTFSKAY-GLASFRVGYAVGHEELI-EKLNVVR--LPFNVSSLAQKAATIAFGD 267 (366)
T ss_pred CCEEEEeCchHHh-cChHHHHhHHhCCHHHH-HHHHHhc--CCCCcCHHHHHHHHHHhCC
Confidence 5679999999999 77899999998876544 4333332 2355666666555555543
No 137
>PLN02231 alanine transaminase
Probab=99.90 E-value=2.5e-22 Score=182.57 Aligned_cols=179 Identities=19% Similarity=0.216 Sum_probs=135.1
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcC-CCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
...|++. |.+ +++.+.+++.+..|.+ +.|++++|+ +++. ++..++. +||.|+++.|.|+.+. ..++..
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~----~~~~~~ 236 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS----ASIALH 236 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHH----HHHHHc
Confidence 4669888 887 5999999998876642 456666665 8986 5566664 7999999999999997 445667
Q ss_pred CeEEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 118 GVVVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 118 g~~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
|.+++.++++ |++++++++.+ ++++|++++|+||||.+.+ +++|+++|+++|++||+||+|..-
T Consensus 237 g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l 316 (534)
T PLN02231 237 GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQEN 316 (534)
T ss_pred CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence 8888887643 68888887753 6899999999999999975 689999999999999999999754
Q ss_pred CCc------CCC------C---C-CccEEEeccccccccCCCceeeEEEee--chhHHHHHHHHH
Q 024619 182 VLS------RPL------E---L-GADIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQ 228 (265)
Q Consensus 182 ~~~------~~~------~---~-~~di~~~s~sK~~~g~~g~~~G~v~~~--~~~~~~~~~~~~ 228 (265)
.+. ... . . ...+++.|+||.+.+.+|+|+||+++. +..+.+.+....
T Consensus 317 ~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~ 381 (534)
T PLN02231 317 VYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVA 381 (534)
T ss_pred ccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHH
Confidence 431 100 0 1 135889999997767789999999863 344444444333
No 138
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.90 E-value=1.6e-22 Score=177.27 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=134.0
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------ 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------ 127 (265)
+...++++.+++++|.+..+++++|++++. ++.+++++||.|+++.+.|.+.. ..++..|++++.++..
T Consensus 51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~----~~~~~~g~~~~~~~~~~~~~~~ 126 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSY----VAAERAGLNVKEVPHTGHPEYK 126 (370)
T ss_pred hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHH----HHHHHcCCEEEEEecCCcccCC
Confidence 467788888999999998888888888885 77888899999999988876654 3457789999988864
Q ss_pred -CHHHHHhhcC-------CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619 128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA 198 (265)
Q Consensus 128 -d~~~l~~~~~-------~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~ 198 (265)
|++++++.+. +++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.|..+ .....+.|++++|+
T Consensus 127 ~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~ 206 (370)
T TIGR02539 127 VDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSG 206 (370)
T ss_pred cCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeC
Confidence 8999998875 26789999999999999999999999999999999999999988654 33355789999999
Q ss_pred ccccccCCCceeeEEEeechhH
Q 024619 199 TKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
||+++++ .+.|+++++++.+
T Consensus 207 sK~~~~~--g~~G~l~~~~~~i 226 (370)
T TIGR02539 207 HKSMAAS--GPCGVLGMSEEWE 226 (370)
T ss_pred cccccCC--CCEEEEEECHHHH
Confidence 9999543 3479998877544
No 139
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.90 E-value=4.3e-22 Score=175.21 Aligned_cols=204 Identities=18% Similarity=0.169 Sum_probs=142.4
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA-AVT 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~ 87 (265)
..+|+|+ .++..- .++|.+........ .......|.+. ....++++.+++++|.+ ++++++++++++. ++.
T Consensus 28 ~~~i~l~-~~~~~~-~~~~~~~~a~~~~~--~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 28 KEMIWMG-QNTNHL-GPHEEVREAMIRCI--EEGEYCKYPPP--EGFPELRELILKDLGLDDDEALITAGATESLYLVMR 101 (380)
T ss_pred CCeEEcc-CCCCCC-CCCHHHHHHHHHHH--hcCCCCCCCCC--cchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHH
Confidence 4678888 444422 23344433321111 11122345443 12556667777777765 4555555668886 666
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--------CCHHHHHhhcCCCceEEEEecCCCCcccccc--
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--------CDLDEVASAIGPWTKLVWVESPTNPRQQICD-- 157 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~-- 157 (265)
.++.+||+|++++|+|..+. ..++..|.+++.+++ .|++++++.+.+++++|++++|+||||.+.+
T Consensus 102 ~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~ 177 (380)
T PRK06225 102 AFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEE 177 (380)
T ss_pred HhcCCCCEEEEcCCCCcchH----HHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHH
Confidence 77899999999999998775 445678888888764 2678999998888999999999999999864
Q ss_pred -HHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619 158 -IRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 226 (265)
Q Consensus 158 -l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~ 226 (265)
+++|+++|+++|+++|+||+|...... .....+.++++.|+||++ |++|+|+|+++++++.+ +....
T Consensus 178 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~l~-~~~~~ 249 (380)
T PRK06225 178 EIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPDLI-EVVKS 249 (380)
T ss_pred HHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHHHH-HHHHH
Confidence 899999999999999999998521111 111235678999999999 77899999999876544 43333
No 140
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.90 E-value=8.5e-23 Score=176.34 Aligned_cols=180 Identities=19% Similarity=0.202 Sum_probs=135.0
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHh
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVAS 134 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~ 134 (265)
..++++.+++++|.+ +.+++++|+ +++.++..++.+| .|++.+|+|..+. ..++..|++++.++ |++++++
T Consensus 49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~~--d~~~l~~ 121 (330)
T TIGR01140 49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVELP--DLDRLPA 121 (330)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEeC--CHHHHHh
Confidence 477888888888875 677777776 7787666667788 6999999998886 44577899999988 9999999
Q ss_pred hcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCC----CCCccEEEeccccccccCC
Q 024619 135 AIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPL----ELGADIVMHSATKFIAGHS 206 (265)
Q Consensus 135 ~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~----~~~~di~~~s~sK~~~g~~ 206 (265)
.+ +++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|...... ... ..+.+++++|+||++ |++
T Consensus 122 ~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~ 199 (330)
T TIGR01140 122 AL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFF-GLA 199 (330)
T ss_pred hc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhh-cCc
Confidence 88 46789999999999999987 677889999999999999999744332 111 235679999999999 677
Q ss_pred CceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 207 g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|+|+|+++++++.+ ..+.... .....+...+..+.+.++
T Consensus 200 G~R~G~i~~~~~~~-~~l~~~~--~~~~~s~~~q~~~~~~l~ 238 (330)
T TIGR01140 200 GLRLGFVVAHPALL-ARLREAL--GPWTVNGPARAAGRAALA 238 (330)
T ss_pred hhhhhheeCCHHHH-HHHHhcC--CCCCchHHHHHHHHHHHh
Confidence 89999999877644 3333222 223344444444444443
No 141
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.90 E-value=1.8e-22 Score=176.87 Aligned_cols=191 Identities=19% Similarity=0.228 Sum_probs=136.3
Q ss_pred CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619 47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123 (265)
Q Consensus 47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (265)
+.|++.+ ..++++.++++++.+ +.+++++|+ +++. ++..++++||.|++++|+|+.+... ++..|.+++.
T Consensus 62 ~~Y~~~~---~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~----~~~~g~~~~~ 134 (369)
T PRK08153 62 WKYGDPE---NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYH----VAGFGGRLVT 134 (369)
T ss_pred hcCCCCc---cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHH----HHHcCCeEEE
Confidence 4566553 456777777777765 577778776 8886 5566789999999999999988733 3456788887
Q ss_pred ecCC----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCc---CCC--CCCc
Q 024619 124 VNTC----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS---RPL--ELGA 191 (265)
Q Consensus 124 ~~~~----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~---~~~--~~~~ 191 (265)
++.+ |++++++.+. +++++|++++|+||||.+.+.+++.++++.. +++||+||+|...... ... ..+.
T Consensus 135 vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~ 214 (369)
T PRK08153 135 VPYRDDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPN 214 (369)
T ss_pred eeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCC
Confidence 7753 6788776654 6789999999999999999877666666543 8999999999743221 111 2235
Q ss_pred cEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.+++.||||.+ |.+|+|+||++++++.+ +.+...+. ...+++..+..+...++
T Consensus 215 ~i~~~SfSK~~-g~~GlRiG~~v~~~~~~-~~l~~~~~--~~~~s~~~q~~~~~~l~ 267 (369)
T PRK08153 215 VIRMRTFSKAY-GLAGARVGYAIGAPGTI-KAFDKVRN--HFGMNRIAQAAALAALK 267 (369)
T ss_pred EEEEecchHhc-cCcchheeeeecCHHHH-HHHHHhhc--CCCCCHHHHHHHHHHhc
Confidence 69999999999 67789999999876544 33333332 24466666555555444
No 142
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.90 E-value=9e-23 Score=176.35 Aligned_cols=220 Identities=19% Similarity=0.263 Sum_probs=157.7
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CC-ceEEecchH-HHHH-HHH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-AD-RALCFTSGM-AALA-AVT 87 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~-~~i~~~~g~-~al~-~~~ 87 (265)
.+++|++.-+.+|+. |.+......... ....|+. +...++++.+++++| .+ +.++++.|+ +.+. +++
T Consensus 23 ~~i~LssNenP~gp~--~~~~~~~~~~~~----~~~rYPd---~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSNENPYGPP--PKVIEAIRAALD----KLNRYPD---PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCCCCCCCCC--HHHHHHHHHHHH----hhccCCC---CcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 588898555566643 332222111110 1233443 367888888999988 55 677778887 7776 778
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAE 163 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~ 163 (265)
.++.+||+|++..|+|..|. ..++..|++++.++. .|++.+.+.+.+++++|++|+||||||...+.++|.+
T Consensus 94 ~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~ 169 (356)
T COG0079 94 AFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVKVPLKEFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRA 169 (356)
T ss_pred HhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEEecccccccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 88999999999999999996 666889999999997 5889999998889999999999999999988777777
Q ss_pred HHHHc--CCEEEEeCCcCCCCCcCCC----CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCCh
Q 024619 164 MAHAH--GALLLVDNSIMSPVLSRPL----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 237 (265)
Q Consensus 164 ~a~~~--~~~li~D~~~~~~~~~~~~----~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~ 237 (265)
++... +.+||+||+|....-.+.. ..+..+++.||||.| |.+|+|.|+++++.+.+ +.+.... ....++.
T Consensus 170 l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~~i-~~l~~vr--~p~~v~~ 245 (356)
T COG0079 170 LLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPELI-AALNKVR--PPFNVSS 245 (356)
T ss_pred HHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHHHH-HHHHHhc--CCCCCCH
Confidence 76654 8899999999743332111 234479999999999 88999999987766544 4333332 2345555
Q ss_pred hHHHHHHhccC
Q 024619 238 FDCWICLRGVK 248 (265)
Q Consensus 238 ~~~~~~~~~l~ 248 (265)
.....+...++
T Consensus 246 ~a~~aa~aal~ 256 (356)
T COG0079 246 PALAAAIAALR 256 (356)
T ss_pred HHHHHHHHHcc
Confidence 55544444443
No 143
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.90 E-value=4.2e-23 Score=179.39 Aligned_cols=221 Identities=18% Similarity=0.228 Sum_probs=150.8
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~ 87 (265)
..+|+|+ .+++ +..+||.+..+. ... . .....|+.. ..+++++.++++++.+ +.+++++|+ +++. ++.
T Consensus 19 ~~~i~l~-~~~~-~~~~~~~~~~a~-~~~-~--~~~~~y~~~---~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 19 KEVIKLN-SNEN-PFGPPPKAKEAL-RAE-A--DKLHRYPDP---DPAELKQALADYYGVDPEQILLGNGSDEIIELLIR 89 (346)
T ss_pred CceEEcc-CCCC-CCCCCHHHHHHH-HHh-H--HHhhcCCCC---CHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHH
Confidence 4799999 6555 222344333322 111 1 112345433 2367888888888865 456666665 8875 667
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~ 162 (265)
.++++||+|++++|+|+.+. ..++..|.+++.++. .|++++++.+.+++++|++++|+||||.+.+++++.
T Consensus 90 ~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~ 165 (346)
T TIGR01141 90 AFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIE 165 (346)
T ss_pred HhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 77899999999999997665 445668899988875 378999998888899999999999999999999999
Q ss_pred HHHHHc--CCEEEEeCCcCCCCCc-CC----CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCC
Q 024619 163 EMAHAH--GALLLVDNSIMSPVLS-RP----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL 235 (265)
Q Consensus 163 ~~a~~~--~~~li~D~~~~~~~~~-~~----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~ 235 (265)
++++.+ |+++|+|++|+.-... .+ ...+.+++++|+||++ |++|+|+|+++.+++.+ +.+..... ....
T Consensus 166 ~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~-~~~~~~~~--~~~~ 241 (346)
T TIGR01141 166 AVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIANAEII-DALNKVRA--PFNL 241 (346)
T ss_pred HHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecCHHHH-HHHHhccC--CCCC
Confidence 998887 9999999998732211 11 1123568899999999 56789999999876543 33333221 2334
Q ss_pred ChhHHHHHHhccC
Q 024619 236 APFDCWICLRGVK 248 (265)
Q Consensus 236 ~~~~~~~~~~~l~ 248 (265)
++..+..+.+.++
T Consensus 242 ~~~~~~~~~~~l~ 254 (346)
T TIGR01141 242 SRLAQAAAIAALR 254 (346)
T ss_pred CHHHHHHHHHHhC
Confidence 4444444444443
No 144
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.90 E-value=8.8e-23 Score=180.63 Aligned_cols=162 Identities=21% Similarity=0.259 Sum_probs=134.0
Q ss_pred hHHHHHHHHHhHhCCC--ceEEecch-HHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKAD--RALCFTSG-MAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~~i~~~~g-~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|++ +.+++++| ++++. ++.++ +++||+|++++++|++....+...++..|++++.++.+
T Consensus 61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~ 140 (398)
T TIGR03392 61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG 140 (398)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC
Confidence 3678999999999974 45555555 58886 55555 47899999999999987666666778889999998753
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF 201 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~ 201 (265)
|++++++++.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....+.|++++|++|+
T Consensus 141 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~ 220 (398)
T TIGR03392 141 ADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKL 220 (398)
T ss_pred CCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccc
Confidence 789999999989999999999999999999999999999999999999999877664 23345789999999997
Q ss_pred cccCCCceeeEEEeechhH
Q 024619 202 IAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~ 220 (265)
+ ||+| .|+++.+++.+
T Consensus 221 ~-gp~G--~G~l~~~~~~~ 236 (398)
T TIGR03392 221 Y-GPTG--IGVLYGKTELL 236 (398)
T ss_pred c-CCCc--eEEEEEcHHHH
Confidence 6 7887 59998877544
No 145
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.90 E-value=3.7e-22 Score=176.48 Aligned_cols=165 Identities=19% Similarity=0.162 Sum_probs=126.2
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC---CceE--EecchH-HHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhc
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA---DRAL--CFTSGM-AALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVT 114 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i--~~~~g~-~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~ 114 (265)
...|++. |.+ +++++.+++.+..+. .+.+ ++|+|+ +|+. ++..+ +++||+|++++|+|+.+. ..+
T Consensus 62 ~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~----~~~ 137 (396)
T PRK09257 62 TKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHR----AIF 137 (396)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHH----HHH
Confidence 4578887 886 599999998776542 2333 667665 8886 44333 589999999999999997 555
Q ss_pred CCCCeEEEeecC-------CCHHHHHhhcC---CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 115 PKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 115 ~~~g~~~~~~~~-------~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
+..|++++.++. .|++++++.+. +++.++++++||||||.+.+ +++|+++|++||+++|+||+|..-
T Consensus 138 ~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l 217 (396)
T PRK09257 138 EAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGF 217 (396)
T ss_pred HHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccccc
Confidence 778889888874 26788888764 34567777999999999975 688999999999999999999753
Q ss_pred CCc-C----C----C-CCCccEEEeccccccccCCCceeeEEEe
Q 024619 182 VLS-R----P----L-ELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 182 ~~~-~----~----~-~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
... . + . ..+..++++||||.+ +++|+|.||++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRiG~~~~ 260 (396)
T PRK09257 218 GDGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGERVGALSV 260 (396)
T ss_pred ccchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccccceeEEE
Confidence 321 0 0 1 123579999999999 788999999974
No 146
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.90 E-value=5.7e-22 Score=175.18 Aligned_cols=169 Identities=25% Similarity=0.304 Sum_probs=131.9
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCC---CceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKA---DRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~---~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
...|... |.+ +++.+++++.+.++. .+.+++++| ++++. ++..++++||.|++++|+|+.+. ..++..|
T Consensus 66 ~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~----~~~~~~g 141 (394)
T PRK06836 66 LHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYR----FYVDNHG 141 (394)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHH----HHHHHcC
Confidence 4567555 776 488888888776543 234445544 58886 66778999999999999999986 4456778
Q ss_pred eEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHH------cCCEEEEeCCcCCCCC
Q 024619 119 VVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA------HGALLLVDNSIMSPVL 183 (265)
Q Consensus 119 ~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~------~~~~li~D~~~~~~~~ 183 (265)
++++.++.+ |++++++++.+++++|++++|+||||.+.+ +++|+++|++ ||+++|+||+|.....
T Consensus 142 ~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~ 221 (394)
T PRK06836 142 GKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221 (394)
T ss_pred CEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence 999888753 689999999889999999999999999976 6888888999 8999999999974322
Q ss_pred c-----C-CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 184 S-----R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 184 ~-----~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
. . ....+.+++++|+||.+ +.+|+|.||+++++..
T Consensus 222 ~~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~ 262 (394)
T PRK06836 222 DGAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPEM 262 (394)
T ss_pred CCCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHHH
Confidence 1 1 11235689999999999 6678999999987643
No 147
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.90 E-value=3.1e-22 Score=176.19 Aligned_cols=202 Identities=26% Similarity=0.275 Sum_probs=148.5
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CC-hhHHHHHHHHHhHhCCCceEEecchHHHH-HH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GN-PTRDALESLLAKLDKADRALCFTSGMAAL-AA 85 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~ 85 (265)
.+..+|+|+ +++++|..++|.+.................|... |. +..+++++.++++++.++.+++++|++++ .+
T Consensus 37 ~g~~~id~~-~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~ 115 (385)
T PRK05958 37 DGRRMLNFA-SNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAV 115 (385)
T ss_pred CCceEEEee-CCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHH
Confidence 567899999 7777887655544443221111111111122222 43 56899999999999988889999998665 46
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC---CceEEEEecCCCCccccccHHHHH
Q 024619 86 VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIA 162 (265)
Q Consensus 86 ~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~ 162 (265)
+..++++||.|++++|.|+.+.. .++..|.+++.++..|++++++.+.+ ++.++++++++|++|.+.++++|+
T Consensus 116 l~~~~~~gd~V~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~ 191 (385)
T PRK05958 116 LTALAGKGDLIVSDKLNHASLID----GARLSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELV 191 (385)
T ss_pred HHHhCCCCCEEEEeCccCHHHHH----HHHhcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHH
Confidence 67789999999999999988863 34567888888888899999988864 366778888999999999999999
Q ss_pred HHHHHcCCEEEEeCCcCCCCCcC---------CC-CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 163 EMAHAHGALLLVDNSIMSPVLSR---------PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 163 ~~a~~~~~~li~D~~~~~~~~~~---------~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
++|++||+++|+||+|+.+.++. .. ..+.++++.|+||++ +++| |+++.+++.
T Consensus 192 ~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G---g~~~~~~~~ 254 (385)
T PRK05958 192 ALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSG---AAVLGSETL 254 (385)
T ss_pred HHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCC---cEEEcCHHH
Confidence 99999999999999998664421 11 123568999999999 4443 777766543
No 148
>PRK09105 putative aminotransferase; Provisional
Probab=99.90 E-value=1.7e-22 Score=176.90 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=122.9
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----C
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----D 128 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d 128 (265)
..++++.+++++|.+ +.|++++|+ +++. ++..++++||+|++++|+|+.+. ..++..|.+++.++.+ |
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~d 155 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGW----RAADAQGAPVAKVPLRADGAHD 155 (370)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEecCCCCCCCC
Confidence 666777788888766 566666665 8886 66778899999999999999886 5567789999988753 6
Q ss_pred HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc-CC----CCCCccEEEeccccc
Q 024619 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS-RP----LELGADIVMHSATKF 201 (265)
Q Consensus 129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~-~~----~~~~~di~~~s~sK~ 201 (265)
++++++. .++++++++++|+||||.+.+.+++.++++. +++++|+||+|...... .. ...+..+++.||||.
T Consensus 156 ~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~ 234 (370)
T PRK09105 156 VKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKL 234 (370)
T ss_pred HHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHh
Confidence 7888776 4678999999999999999988777777654 48999999999522111 11 112456899999999
Q ss_pred cccCCCceeeEEEeechhHH
Q 024619 202 IAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~ 221 (265)
+ |.+|+|+||++++++.+.
T Consensus 235 ~-g~~GlRiG~~v~~~~~i~ 253 (370)
T PRK09105 235 Y-GMAGMRLGLAAARPDLLA 253 (370)
T ss_pred h-cCCccceeeeecCHHHHH
Confidence 9 778999999998765543
No 149
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=1.5e-22 Score=176.40 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=133.0
Q ss_pred CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619 47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123 (265)
Q Consensus 47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (265)
..|+..| ..++++.++++++.+ +.+++++|+ +++. ++..++++||+|++++|+|+.+. ..++..|++++.
T Consensus 55 ~~y~~~~---~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~ 127 (353)
T PRK05387 55 RLYPDPN---ADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYP----VYAGLYGIPYEE 127 (353)
T ss_pred hcCCCCc---HHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHH----HHHHHcCCEEEE
Confidence 4565443 256677777777765 456666665 8886 67778999999999999997775 445677889888
Q ss_pred ecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCCCc----CCCCCCccE
Q 024619 124 VNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLS----RPLELGADI 193 (265)
Q Consensus 124 ~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~~~----~~~~~~~di 193 (265)
++.+ |++++++ ++++|++++|+||||.+.+.+++.++++.+ ++++|+||+|..-... .....+.++
T Consensus 128 v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i 203 (353)
T PRK05387 128 IPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLL 203 (353)
T ss_pred eecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEE
Confidence 8754 5676653 467899999999999999999999998876 9999999998632111 111235679
Q ss_pred EEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc-cCCCChhHHHHHHhccC
Q 024619 194 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVK 248 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 248 (265)
+++|+||.+ +.+|+|.|+++.+++.+ +.+....... ....+...+..+.+.++
T Consensus 204 ~~~S~SK~~-~~~GlR~G~~~~~~~~~-~~l~~~~~~~~~~~~~~~~q~~~~~~l~ 257 (353)
T PRK05387 204 VVQTFSKSR-SLAGLRVGFAIGHPELI-EALNRVKNSFNSYPLDRLAQAGAIAAIE 257 (353)
T ss_pred EEEehhHhh-cchhhhceeeecCHHHH-HHHHHhhccCCCCCcCHHHHHHHHHHhc
Confidence 999999999 67889999998766544 4343333221 22344444444444443
No 150
>PRK03321 putative aminotransferase; Provisional
Probab=99.89 E-value=1.3e-22 Score=176.68 Aligned_cols=184 Identities=19% Similarity=0.220 Sum_probs=137.4
Q ss_pred hHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 56 TRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
...++++.++++++.+ +.+++++|+ +++. ++..++++||+|+++.|+|..+. ..++..|.+++.++.+
T Consensus 58 g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~ 133 (352)
T PRK03321 58 GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYP----ILVQVAGATPVQVPLTPDHTH 133 (352)
T ss_pred cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHH----HHHHHcCCEEEEccCCCCCCC
Confidence 3567777778888776 467778887 6665 55667899999999999997775 4456678899888864
Q ss_pred CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc----CC----CCCCccEEEec
Q 024619 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS----RP----LELGADIVMHS 197 (265)
Q Consensus 128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~----~~----~~~~~di~~~s 197 (265)
|++++++.+.+++++|++++|+||||.+.+.+++.++|++ +++++|+||+|...... .+ ...+..++++|
T Consensus 134 ~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S 213 (352)
T PRK03321 134 DLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRT 213 (352)
T ss_pred CHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEec
Confidence 6899999888889999999999999999999999999987 58999999999743321 11 12246799999
Q ss_pred cccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 198 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 198 ~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
+||.+ |.+|+|+|+++++++.+ +.+... ......+...+..+...+
T Consensus 214 ~SK~~-g~~GlRiG~~v~~~~~~-~~~~~~--~~~~~~s~~~q~~a~~~l 259 (352)
T PRK03321 214 FSKAY-GLAGLRVGYAVGHPEVI-AALRKV--AVPFSVNSLAQAAAIASL 259 (352)
T ss_pred chHHh-hhHHHhhhhhcCCHHHH-HHHHHh--cCCCCCCHHHHHHHHHHh
Confidence 99999 67789999999876544 433332 223445555544443343
No 151
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=4.2e-22 Score=173.84 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=140.2
Q ss_pred eeEeeccCCC-CCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HH
Q 024619 11 TLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AV 86 (265)
Q Consensus 11 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~ 86 (265)
..+++|+ .+ +.+++. +.+..+ +... .. ....|+..|. .++++.++++++.+ +.+++++|+ +++. ++
T Consensus 30 ~~~i~l~-~~~~~~~~~-~~~~~~--~~~~-~~--~~~~Y~~~~~---~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~ 99 (357)
T PRK14809 30 DDLVKLS-SNENPHGPS-PAAVEA--IREA-AE--RVHSYPKASH---ADLTAALADRWDVSPEQVWLANGGDGALDYLA 99 (357)
T ss_pred cceeEec-CCCCCCCCC-HHHHHH--HHHH-Hh--hhhcCCCCCH---HHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 3689999 44 334432 222222 2111 11 1345654443 45556666666655 466677775 8886 66
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619 87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICDIR 159 (265)
Q Consensus 87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~ 159 (265)
..++++||.|++++|+|+.+. ..++..|.+++.++++ +.+++.+.. +++++|++++|+||||.+.+.+
T Consensus 100 ~~~~~~gd~V~v~~P~y~~~~----~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~ 174 (357)
T PRK14809 100 RAMLDPGDTVLVPDPGFAYYG----MSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLD 174 (357)
T ss_pred HHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHH
Confidence 778999999999999998775 3345566777766542 455665554 4689999999999999999877
Q ss_pred HHHHHHHHc--CCEEEEeCCcCCCCCc-C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhcc
Q 024619 160 KIAEMAHAH--GALLLVDNSIMSPVLS-R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG 232 (265)
Q Consensus 160 ~i~~~a~~~--~~~li~D~~~~~~~~~-~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~ 232 (265)
++.++++.. +++||+||+|..-... . ....+..+++.||||.+ +.+|+|+||++++++.+.. +...+ ..
T Consensus 175 ~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~-~~~~~--~~ 250 (357)
T PRK14809 175 EVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPEEWADA-YARVN--TP 250 (357)
T ss_pred HHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCHHHHHH-HHHhC--CC
Confidence 766666553 7899999999743321 1 11234679999999999 6788999999988765433 32222 22
Q ss_pred CCCChhHHHHHHhcc
Q 024619 233 SGLAPFDCWICLRGV 247 (265)
Q Consensus 233 ~~~~~~~~~~~~~~l 247 (265)
...+...+..+...+
T Consensus 251 ~~~~~~~~~~a~~~l 265 (357)
T PRK14809 251 FAASELACRAGLAAL 265 (357)
T ss_pred CCCCHHHHHHHHHHh
Confidence 344555444444444
No 152
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.89 E-value=4e-22 Score=176.58 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhHhCC-C-ceEEecch-HHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKA-D-RALCFTSG-MAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~-~-~~i~~~~g-~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|+ + +.+++++| ++++. ++.++ +++||+|++++++|++....|...++..|++++.++.+
T Consensus 64 ~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~ 143 (401)
T PRK10874 64 RYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG 143 (401)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC
Confidence 477899999999998 4 45655555 58886 45555 37899999999999987666767778889999988753
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF 201 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~ 201 (265)
|++++++.+.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....+.|++++|++|+
T Consensus 144 ~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 223 (401)
T PRK10874 144 ADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKL 223 (401)
T ss_pred CCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccc
Confidence 789999999999999999999999999999999999999999999999999877664 23345799999999997
Q ss_pred cccCCCceeeEEEeechhH
Q 024619 202 IAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~ 220 (265)
+ ||+|+ |+++.+++.+
T Consensus 224 ~-gp~G~--G~l~~~~~~~ 239 (401)
T PRK10874 224 Y-GPTGI--GVLYGKSELL 239 (401)
T ss_pred c-CCCcc--EEEEEchHHH
Confidence 6 78885 8988877544
No 153
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.89 E-value=3.8e-22 Score=174.03 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=120.8
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CH
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DL 129 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~ 129 (265)
..++++.++++++.+ +.+++++|+ +++..+...+.+|+ +++..|+|..+. ..++..|.+++.++.+ ++
T Consensus 57 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~ 131 (356)
T PRK08056 57 YRHLHQALARHHQVPASWILAGNGETESIFAVVSGLKPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLREADGWQL 131 (356)
T ss_pred HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecccccCCCc
Confidence 567777777777766 566777776 88864444457776 677789998876 4557789999988753 12
Q ss_pred -HHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCCCccEEEeccc
Q 024619 130 -DEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSAT 199 (265)
Q Consensus 130 -~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~~~di~~~s~s 199 (265)
+++++.+.+++++|++++|+||||.+.+ +++|+++|+++++++|+||+|...... .....+.++++.|+|
T Consensus 132 ~~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~S 211 (356)
T PRK08056 132 TDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLT 211 (356)
T ss_pred cHHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEech
Confidence 3555666788999999999999999987 788999999999999999998643221 111335789999999
Q ss_pred cccccCCCceeeEEEeechhHHH
Q 024619 200 KFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
|++ +.+|+|+||+++++..+.+
T Consensus 212 K~~-~~~G~RiG~~v~~~~~~~~ 233 (356)
T PRK08056 212 KFY-AIPGLRLGYLVNSDDAAVA 233 (356)
T ss_pred hhc-cCcchhheeeecCCHHHHH
Confidence 999 7789999999886544433
No 154
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.89 E-value=5.3e-22 Score=171.82 Aligned_cols=209 Identities=19% Similarity=0.220 Sum_probs=150.8
Q ss_pred CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCC-hhHHHHHHHHHhHhCC--CceEEecchHHHHH-HHHHhcCCCC
Q 024619 19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKA--DRALCFTSGMAALA-AVTHLLGTGE 94 (265)
Q Consensus 19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~-~~~~~~~~g~ 94 (265)
.|||+|+..+|.+..+...... .|+ |. +..+++++.+++++|. ++++++++|.+|+. ++.+++++||
T Consensus 26 ~~~ylgl~~~~~~~~~~~~~~~-------~~~--g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd 96 (346)
T TIGR03576 26 LYDLTGLAGGFKIDEEDLELLE-------TYV--GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGR 96 (346)
T ss_pred ccccccCCCChhHHHHHHHHHH-------Hhc--CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCC
Confidence 6899999999998876433211 232 44 5699999999999998 67888888889985 7788899999
Q ss_pred EEEEc---CCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc---ccHHHHHHHHHHc
Q 024619 95 EIVAG---DDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI---CDIRKIAEMAHAH 168 (265)
Q Consensus 95 ~viv~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~---~~l~~i~~~a~~~ 168 (265)
+|++. .|.|.++. ..++..|.++.. ..++++++. .+++++|+++. +||+|.+ .++++|+++|+++
T Consensus 97 ~Vli~~~d~p~~~s~~----~~~~l~ga~~~~--~~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~ 167 (346)
T TIGR03576 97 KVVHYLPEKPAHPSIP----RSCKLAGAEYFE--SDELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSK 167 (346)
T ss_pred EEEECCCCCCCchhHH----HHHHHcCCEEec--cCCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHc
Confidence 99875 46777765 445667777643 346666533 35678888875 5899998 6899999999999
Q ss_pred CCEEEEeCCcCCCCCc---C--CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHH
Q 024619 169 GALLLVDNSIMSPVLS---R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 243 (265)
Q Consensus 169 ~~~li~D~~~~~~~~~---~--~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (265)
|+++++||+|+.+... . ....+.|+++.|+||++. |+++|+++++++.+ +.+...........+++.++.+
T Consensus 168 ~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKala---G~r~G~v~~~~~li-~~l~~~~~~~~~s~~~~~~~aa 243 (346)
T TIGR03576 168 EAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMD---GPRGGLLAGRKELV-DKIKSVGEQFGLEAQAPLLAAV 243 (346)
T ss_pred CCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhcc---ccceEEEEeCHHHH-HHHHHhhcCcccCccHHHHHHH
Confidence 9999999999976532 1 123356899999999653 45789999877544 4444444333333455565555
Q ss_pred HhccCc
Q 024619 244 LRGVKT 249 (265)
Q Consensus 244 ~~~l~~ 249 (265)
+..|+.
T Consensus 244 ~~aL~~ 249 (346)
T TIGR03576 244 VRALEE 249 (346)
T ss_pred HHHHhh
Confidence 555544
No 155
>PLN02397 aspartate transaminase
Probab=99.89 E-value=9.2e-22 Score=175.15 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=122.5
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---c-e----EEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhc
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---R-A----LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~-~----i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~ 114 (265)
...|++. |.+ +|+++.+++.+..+.. + + ++.++|+.++ ..++.++.|||+|++++|+|+.+. ..+
T Consensus 84 ~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~----~~~ 159 (423)
T PLN02397 84 NKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHH----NIF 159 (423)
T ss_pred CCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHH----HHH
Confidence 3469888 887 5899999886654321 2 2 2233344334 355666679999999999999997 555
Q ss_pred CCCCeEEEeecC-------CCHHHHHhhcC---CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 115 PKTGVVVKRVNT-------CDLDEVASAIG---PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 115 ~~~g~~~~~~~~-------~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
+..|.+++.++. .|++.+++.+. ++++++++++||||||.+.+ +++|+++|++||++||+||+|..-
T Consensus 160 ~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l 239 (423)
T PLN02397 160 RDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGF 239 (423)
T ss_pred HHcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCc
Confidence 778889888864 26777766654 56788999999999999965 678999999999999999999754
Q ss_pred CCcC------C---C--CCCccEEEeccccccccCCCceeeEEE
Q 024619 182 VLSR------P---L--ELGADIVMHSATKFIAGHSDVMAGVLA 214 (265)
Q Consensus 182 ~~~~------~---~--~~~~di~~~s~sK~~~g~~g~~~G~v~ 214 (265)
.+.. + . ..+..++++||||.+ +++|+|+||++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v 282 (423)
T PLN02397 240 ASGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALS 282 (423)
T ss_pred cCCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEE
Confidence 4321 0 1 112479999999999 78899999985
No 156
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.89 E-value=4.5e-22 Score=172.33 Aligned_cols=209 Identities=18% Similarity=0.182 Sum_probs=143.0
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchH-HHHHHHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALAAVT 87 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~~~~ 87 (265)
..+++|++.-+.+|+.+++.. .. ....|+. +. .++++.+++++|.. +.+++++|+ +++.++.
T Consensus 24 ~~~i~ls~Nenp~~~~~~~~~-~~----------~~~~Yp~---~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~ 88 (339)
T PRK06959 24 DAWLDLSTGINPHGYPVPPVP-AD----------AWRRLPE---DD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP 88 (339)
T ss_pred hhhceeccCCCCCCCCCCCCC-HH----------HHHhCCC---ch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH
Confidence 457999955555665533321 10 1122432 34 88999999999884 577778876 8887666
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH---HHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR---KIAEM 164 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~---~i~~~ 164 (265)
.++++|+ |+++.|+|+.+. ..++..|++++.++.++ +. +.++++++++++||||||.+.+.+ +|++.
T Consensus 89 ~~~~~g~-v~v~~P~y~~y~----~~~~~~g~~~~~v~~~~-~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~ 158 (339)
T PRK06959 89 ALLPRGR-VGIAPLAYSEYA----PAFARHGHRVVPLDEAA-DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQ 158 (339)
T ss_pred HhcCCCe-EEEcCCCcHHHH----HHHHHCCCEEEeecccc-hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 6788877 888999999986 55577899999888755 32 334567899999999999997754 45555
Q ss_pred HHHcCCEEEEeCCcCCCCCc-C---CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHH
Q 024619 165 AHAHGALLLVDNSIMSPVLS-R---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 240 (265)
Q Consensus 165 a~~~~~~li~D~~~~~~~~~-~---~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (265)
|++++.++|+||+|...... . ....+..+++.||||.+ |.+|+|.||++++++.+ +.+..... ...++...+
T Consensus 159 ~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~~~li-~~l~~~~~--~~~vs~~~q 234 (339)
T PRK06959 159 LAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAAPALL-AALRDALG--AWTVSGPAR 234 (339)
T ss_pred HHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhc-CCcchheEEEecCHHHH-HHHHHhcC--CCCCcHHHH
Confidence 67889999999999854321 1 11224469999999999 77899999999876544 43333322 233455554
Q ss_pred HHHHhccC
Q 024619 241 WICLRGVK 248 (265)
Q Consensus 241 ~~~~~~l~ 248 (265)
..+...|+
T Consensus 235 ~a~~~~L~ 242 (339)
T PRK06959 235 HAVRAAFA 242 (339)
T ss_pred HHHHHHhC
Confidence 44444443
No 157
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=6.1e-22 Score=173.66 Aligned_cols=200 Identities=20% Similarity=0.240 Sum_probs=140.7
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVT 87 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~ 87 (265)
.+++|+...+.++ +++.+.... ... . .....|++. | .++++.+++++|.+ +.+++++|+ +++. ++.
T Consensus 37 ~~i~l~~~~~~~~--~~~~~~~al-~~~--~-~~~~~Y~~~~g----~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 37 RIAKLGSNENPLG--PSPAVRRAF-ADI--A-ELLRLYPDPQG----RALREAIAARTGVPADRIILGNGSEDLIAVICR 106 (371)
T ss_pred ceEEcCCCCCCCC--CCHHHHHHH-HHH--H-HHhhcCCCCcH----HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 6789983323344 333333322 111 1 123456655 3 25777777778766 567777776 8886 567
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHH
Q 024619 88 HLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIA 162 (265)
Q Consensus 88 ~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~ 162 (265)
.++++||.|+++.|+|+.+. ..++..|++++.++.+ |++++++.+.+++++|++++|+||||.+.+.+++.
T Consensus 107 ~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~ 182 (371)
T PRK05166 107 AVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLA 182 (371)
T ss_pred HhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 77899999999999998775 5557789999888764 68999998888899999999999999999876666
Q ss_pred HHHHH--cCCEEEEeCCcCCCCCc----CC---C--CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619 163 EMAHA--HGALLLVDNSIMSPVLS----RP---L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 226 (265)
Q Consensus 163 ~~a~~--~~~~li~D~~~~~~~~~----~~---~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~ 226 (265)
++++. .++++|+||+|...... .. . ..+..++++||||.+ +.+|+|.||++.++..+.+.+..
T Consensus 183 ~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~l~GlRiG~~i~~~~~l~~~~~~ 256 (371)
T PRK05166 183 RVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAY-GLAGLRVGYGLVSDPELVGLLDR 256 (371)
T ss_pred HHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhh-hcchhheeeeecCCHHHHHHHHH
Confidence 65553 37899999998643321 11 1 113569999999999 67889999987766555554443
No 158
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=1.8e-22 Score=176.05 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=128.5
Q ss_pred CCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619 46 PYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVV 121 (265)
Q Consensus 46 ~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~ 121 (265)
...|++.| ..++++.+++++|.+ +.+++++|+ +++. ++..++++||+|++++|+|..+. ..++..|+++
T Consensus 57 ~~~Y~~~~---~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~ 129 (356)
T PRK04870 57 LNRYPDPR---AAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEF 129 (356)
T ss_pred cccCCCCC---HHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEE
Confidence 34566543 356666777777754 367788887 7776 55667899999999999998875 5567889999
Q ss_pred EeecCC-----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc----CCCCCCc
Q 024619 122 KRVNTC-----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS----RPLELGA 191 (265)
Q Consensus 122 ~~~~~~-----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~----~~~~~~~ 191 (265)
+.++.+ |++++++.+. .++++|++++|+||||.+.+.+++.++++..++++|+||+|...... .....+.
T Consensus 130 ~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 209 (356)
T PRK04870 130 VGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPN 209 (356)
T ss_pred EEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCC
Confidence 998754 6899999886 58999999999999999999888877777768999999999642221 1112346
Q ss_pred cEEEeccccccccCCCceeeEEEeechhHH
Q 024619 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
.+++.|+|| + +.+|+|+|+++++++.+.
T Consensus 210 vi~~~S~SK-~-~~~GlRiG~~i~~~~~i~ 237 (356)
T PRK04870 210 LLVMRTVSK-L-GLAGLRLGYLAGHPAWIA 237 (356)
T ss_pred EEEEecchh-h-hhHHHhhhhhhCCHHHHH
Confidence 799999999 6 678999999998765443
No 159
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.89 E-value=8.6e-22 Score=172.96 Aligned_cols=163 Identities=25% Similarity=0.322 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHhHhCCC--ceEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 55 PTRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
+..+++++.+++++|.+ +.+++ +++++++. ++.+++++||+|++..++|+++...+...++..|.+++.++.+
T Consensus 44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 123 (376)
T TIGR01977 44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG 123 (376)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence 45888999999999975 24555 45568885 6677889999999999999988776666677779999888753
Q ss_pred --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccccc
Q 024619 128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG 204 (265)
Q Consensus 128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g 204 (265)
|++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++|+.|... .....+.|++++|++||+++
T Consensus 124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~ 203 (376)
T TIGR01977 124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLG 203 (376)
T ss_pred CcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccC
Confidence 799999999889999999999999999999999999999999999999999988775 33456899999999999988
Q ss_pred CCCceeeEEEeechh
Q 024619 205 HSDVMAGVLAVKGER 219 (265)
Q Consensus 205 ~~g~~~G~v~~~~~~ 219 (265)
|.|. |+++.+++.
T Consensus 204 p~g~--g~l~~~~~~ 216 (376)
T TIGR01977 204 PQGT--GGLYIREGI 216 (376)
T ss_pred CCCc--eEEEEcCCc
Confidence 8885 555555543
No 160
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.89 E-value=3e-22 Score=175.80 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=124.9
Q ss_pred CccCCCCCh-hHHHHHHHHHhHhC----CC-ceEEecchH-HHHH-HHHHhcCCCC-EEEEcCCCCCChHHHHHhhcCCC
Q 024619 47 YDYTRSGNP-TRDALESLLAKLDK----AD-RALCFTSGM-AALA-AVTHLLGTGE-EIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 47 ~~y~~~g~~-~~~~l~~~l~~~~g----~~-~~i~~~~g~-~al~-~~~~~~~~g~-~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
..|+..|.+ +++++++++.+.++ .+ +.|++++|+ +++. ++..++.+|| .|++++|+|+.+. ..++..
T Consensus 61 ~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~----~~~~~~ 136 (374)
T PRK02610 61 NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYG----ILAQTL 136 (374)
T ss_pred cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHH----HHHHHc
Confidence 457655775 58888888876542 33 456677776 8886 5667777886 8999999999886 556778
Q ss_pred CeEEEeecCC------CHHHHHhhcC----CCceEEEEecCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCCCCc--
Q 024619 118 GVVVKRVNTC------DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS-- 184 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~-~~~~li~D~~~~~~~~~-- 184 (265)
|++++.++.+ |++++++++. +++++|++++|+||||.+.+.+++.++++- ++++||+||+|......
T Consensus 137 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~ 216 (374)
T PRK02610 137 GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL 216 (374)
T ss_pred CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch
Confidence 9999988753 6788888775 479999999999999999876555444321 48999999999743221
Q ss_pred --CCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 185 --RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 185 --~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
........+++.||||.+ |.+|+|+||++++++.+
T Consensus 217 ~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~~~l~ 253 (374)
T PRK02610 217 VGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGHPELI 253 (374)
T ss_pred HHHHhcCCCEEEEEecchhc-cCcccceeeeecCHHHH
Confidence 111223468899999999 67899999999866544
No 161
>PRK04311 selenocysteine synthase; Provisional
Probab=99.88 E-value=7.4e-22 Score=175.83 Aligned_cols=205 Identities=23% Similarity=0.275 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCC---hHHHHHhhcCCCCeEEEeecC---CC
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGG---TDRLLSRVTPKTGVVVKRVNT---CD 128 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~---~~~~~~~~~~~~g~~~~~~~~---~d 128 (265)
+..+.+++.+++++|+++.+++++|++|+.+++..+.+||+|++++..+.. ... +....+..|+++++++. .+
T Consensus 127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~-i~~~~~~~G~~l~~v~~~~~t~ 205 (464)
T PRK04311 127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFR-IPDVMRQAGARLVEVGTTNRTH 205 (464)
T ss_pred hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchh-hHHHHHHCCcEEEEECCCCCCC
Confidence 447899999999999999999999999987655667899999999875542 222 23455778999999985 47
Q ss_pred HHHHHhhcCCCceEEEEecCCCC--cc--ccccHHHHHHHHHHcCCEEEEeCCcCC------------CCCcCCCCCCcc
Q 024619 129 LDEVASAIGPWTKLVWVESPTNP--RQ--QICDIRKIAEMAHAHGALLLVDNSIMS------------PVLSRPLELGAD 192 (265)
Q Consensus 129 ~~~l~~~~~~~~~~i~~~~~~np--~G--~~~~l~~i~~~a~~~~~~li~D~~~~~------------~~~~~~~~~~~d 192 (265)
++++++++++++++|++++++|+ +| ...|+++|+++|++||+++++|.+.+. +....+.+.++|
T Consensus 206 ~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD 285 (464)
T PRK04311 206 LRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD 285 (464)
T ss_pred HHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc
Confidence 89999999999999999999998 35 567999999999999999999995321 111234457899
Q ss_pred EEEeccccccccCCCceeeEEEeechhHHHHHH------HH----------HHhccCCCChhHHHHHHhccCchHhhHHH
Q 024619 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELY------FL----------QNAEGSGLAPFDCWICLRGVKTMALRVEK 256 (265)
Q Consensus 193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (265)
++++|.+|+++||. +|+++++++.+.. +. .+ .......+++..++..++.++.+..++++
T Consensus 286 iv~fSg~K~LgGp~---~G~i~g~~~li~~-l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~ 361 (464)
T PRK04311 286 LVTFSGDKLLGGPQ---AGIIVGKKELIAR-LKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEE 361 (464)
T ss_pred EEEecCcccccCCc---eEEEEEcHHHHHH-HhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence 99999999997773 7999888765532 22 11 11222333444455566667777888888
Q ss_pred Hhhchhcc
Q 024619 257 QQVCFFDL 264 (265)
Q Consensus 257 ~~~~~~~l 264 (265)
+++++.++
T Consensus 362 ~~~~A~~l 369 (464)
T PRK04311 362 LRARAERL 369 (464)
T ss_pred HHHHHHHH
Confidence 88877654
No 162
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.88 E-value=1.1e-21 Score=174.10 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=135.5
Q ss_pred hHHHHHHHHHhHhCC-C-ceEEecch-HHHHH-HHHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKA-D-RALCFTSG-MAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~-~-~~i~~~~g-~~al~-~~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|. + +.+++++| ++++. ++.. ++++||+|++++++|++....|...++..|++++.++.+
T Consensus 68 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~ 147 (406)
T PRK09295 68 KMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLN 147 (406)
T ss_pred HHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecC
Confidence 477899999999986 3 45666666 48886 4443 468999999999999988777767778889999988753
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF 201 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~ 201 (265)
|++++++++.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+.... ....+.|++++|++|+
T Consensus 148 ~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~ 227 (406)
T PRK09295 148 PDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKL 227 (406)
T ss_pred CCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhc
Confidence 7899999998899999999999999999999999999999999999999999887653 3356899999999996
Q ss_pred cccCCCceeeEEEeechhH
Q 024619 202 IAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~ 220 (265)
+ ||+| .|+++.+++.+
T Consensus 228 ~-gp~G--~G~l~~~~~~~ 243 (406)
T PRK09295 228 Y-GPTG--IGILYVKEALL 243 (406)
T ss_pred c-CCCC--cEEEEEchHhH
Confidence 6 7888 48998887654
No 163
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.88 E-value=6.2e-22 Score=173.50 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=142.6
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCC--C----CCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchH
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--E----NGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGM 80 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~----~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~ 80 (265)
+..+++|+ +|||+|...+|.+........... . ..+..-++. |. +..+++++.+++++|.++.+++++|+
T Consensus 3 ~~~~~~~~-s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~ 81 (370)
T PRK05937 3 ESLSIDFV-TNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGY 81 (370)
T ss_pred CCceEEeE-CCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChH
Confidence 45789999 999999999998877653321111 0 011111221 33 46999999999999999899999999
Q ss_pred HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC------CCceEEEEecCCCCcc
Q 024619 81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVWVESPTNPRQ 153 (265)
Q Consensus 81 ~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~------~~~~~i~~~~~~np~G 153 (265)
.++. ++..+.++||.|+++...|.+....+.. . .+.. +.++..|++++++.+. +++.+|++++++|++|
T Consensus 82 ~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~--~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G 157 (370)
T PRK05937 82 MANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-I--SGWH-QSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKG 157 (370)
T ss_pred HHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-c--CCce-EEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCC
Confidence 7765 4444557788888888888777766532 2 2333 3456778888888775 2456778899999999
Q ss_pred ccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC-----CC---CccEEEeccccccccCCCceeeEEE
Q 024619 154 QICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL-----EL---GADIVMHSATKFIAGHSDVMAGVLA 214 (265)
Q Consensus 154 ~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~-----~~---~~di~~~s~sK~~~g~~g~~~G~v~ 214 (265)
.+.|+++|.++|+++|+++++||+|+.|.++... .+ +.++.+.|++|.+ |+.| +|++.
T Consensus 158 ~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G--~~vl~ 223 (370)
T PRK05937 158 TLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMG--AALLS 223 (370)
T ss_pred CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCc--eEEEc
Confidence 9999999999999999999999999988765221 12 2346788999999 5655 34443
No 164
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.88 E-value=8.9e-22 Score=177.14 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=126.1
Q ss_pred ccCCC-CCh-hHHHHHHHHHh-Hh-C---C--CceEEecch-HHHHH-HHHH-----hcCCCCEEEEcCCCCCChHHHHH
Q 024619 48 DYTRS-GNP-TRDALESLLAK-LD-K---A--DRALCFTSG-MAALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS 111 (265)
Q Consensus 48 ~y~~~-g~~-~~~~l~~~l~~-~~-g---~--~~~i~~~~g-~~al~-~~~~-----~~~~g~~viv~~~~~~~~~~~~~ 111 (265)
.|++. |.+ +++++.+++.+ .+ + . ++.|++++| ++|+. ++.+ +++|||+|++++|.|+.|....
T Consensus 129 ~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~- 207 (527)
T PRK09275 129 NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIP- 207 (527)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHH-
Confidence 48888 876 59998885543 32 2 1 225666665 48885 5554 6899999999999999997442
Q ss_pred hhcCCCCeEEEeecC-------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHH--cCCEEEEeCCcC
Q 024619 112 RVTPKTGVVVKRVNT-------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHA--HGALLLVDNSIM 179 (265)
Q Consensus 112 ~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~--~~~~li~D~~~~ 179 (265)
. ....+.+++.++. .|.+++++++.+++++|++++|+||||.+.+ +++|+++|++ ++++||+||+|+
T Consensus 208 ~-l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~ 286 (527)
T PRK09275 208 E-LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG 286 (527)
T ss_pred H-HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh
Confidence 1 1334667676653 2678999988899999999999999999976 7889999965 499999999997
Q ss_pred CCCCc--CCC--CCCccEEEeccccccccCCCceeeEEEeech
Q 024619 180 SPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 180 ~~~~~--~~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
.-... +.. ..+..+++.||||.+ +.+|+|.||++++++
T Consensus 287 ~f~~~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 287 TFVDDFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVIALHED 328 (527)
T ss_pred hhcccccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhhhcCch
Confidence 43221 111 124679999999999 778999999998876
No 165
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.88 E-value=4.4e-21 Score=168.02 Aligned_cols=197 Identities=18% Similarity=0.151 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
+.++++++++++++|.+.++++++|++|+. ++..+ +++||+|++++++|+++... +...|++++.++++
T Consensus 31 ~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~----~~~~G~~~v~vd~d~~~~~ 106 (376)
T TIGR02379 31 PFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANA----FVLRGAKIVFVDIRPDTMN 106 (376)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCCcCC
Confidence 679999999999999998888888999986 55666 78999999999999888643 35679999998854
Q ss_pred -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CCCCCCccEEEeccc--ccc
Q 024619 128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFI 202 (265)
Q Consensus 128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~~~~~~di~~~s~s--K~~ 202 (265)
|++++++++.+++++|+ |+|++|...|+++|.++|+++|++||+|++|+.+... .+...-.|+.++||+ |.+
T Consensus 107 ~d~~~le~~i~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l 183 (376)
T TIGR02379 107 IDETLIESAITHRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNY 183 (376)
T ss_pred CCHHHHHHhcCcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcC
Confidence 78899999998999987 5567999999999999999999999999999987632 222222477777765 445
Q ss_pred ccCCCceeeEEEeechhHHHHHHHHHHhcc---------------------CCCChhHHHHHHhccCchHhhHHHHhhc
Q 024619 203 AGHSDVMAGVLAVKGERLAKELYFLQNAEG---------------------SGLAPFDCWICLRGVKTMALRVEKQQVC 260 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (265)
. +|.++|+++.+++.+.+..+.++..+. ..++...++..+.+|+.+.....+.+++
T Consensus 184 ~--~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~ 260 (376)
T TIGR02379 184 T--SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLAT 260 (376)
T ss_pred c--ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2 233479988887777776666554221 1234556777778888775554444443
No 166
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.88 E-value=1.2e-21 Score=170.83 Aligned_cols=189 Identities=15% Similarity=0.230 Sum_probs=131.3
Q ss_pred CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619 47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124 (265)
Q Consensus 47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (265)
..|+..+ ..++++.++++++.+ +.+++++|+ +++..+...+.+ +.|++++|+|+.+. ..++..|.+++.+
T Consensus 49 ~~Y~~~~---~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~~-~~v~i~~P~y~~~~----~~~~~~g~~~~~~ 120 (354)
T PRK06358 49 VEYPDPD---YLELRKRIASFEQLDLENVILGNGATELIFNIVKVTKP-KKVLILAPTFAEYE----RALKAFDAEIEYA 120 (354)
T ss_pred hcCCCcc---HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCC-CcEEEecCChHHHH----HHHHHcCCeeEEE
Confidence 3465433 356666677776666 566677776 888754444544 68999999999886 4456778888888
Q ss_pred cCC-------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcC--------C
Q 024619 125 NTC-------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSR--------P 186 (265)
Q Consensus 125 ~~~-------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~--------~ 186 (265)
+.+ | +++++.+.++++++++++|+||||.+.+ +++|+++|+++|+++|+||+|....... .
T Consensus 121 ~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~ 199 (354)
T PRK06358 121 ELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL 199 (354)
T ss_pred eCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc
Confidence 753 3 4555566667999999999999999976 7889999999999999999996433211 1
Q ss_pred CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 187 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 187 ~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
...+..+++.||||.+ |.+|+|+||+++++..+.+.+..... ...++...+......+
T Consensus 200 ~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l 257 (354)
T PRK06358 200 ENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLL 257 (354)
T ss_pred cCCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHh
Confidence 1234679999999999 77889999998865554443333322 2344444444433333
No 167
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.88 E-value=7e-22 Score=171.01 Aligned_cols=221 Identities=21% Similarity=0.204 Sum_probs=146.9
Q ss_pred eccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCC
Q 024619 15 NFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTG 93 (265)
Q Consensus 15 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g 93 (265)
+|+ +++++| ++|.+........ . ....|.+ .+..+++++.+++++|.++.+++++|++++. ++..++++|
T Consensus 1 ~~~-~~~~~~--~~~~v~~a~~~~~--~--~~~~~~~--~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~g 71 (338)
T cd06502 1 DFR-SDTVTG--PTPEMLEAMAAAN--V--GDDVYGE--DPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPG 71 (338)
T ss_pred Ccc-cccCCC--CCHHHHHHHHhcc--c--CCcccCC--CHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCC
Confidence 367 888888 4444444322111 1 1113322 3679999999999999667888888898885 667788999
Q ss_pred CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC----CCHHHHHhhcCC-------CceEEEEecCCCCccc--cccHHH
Q 024619 94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT----CDLDEVASAIGP-------WTKLVWVESPTNPRQQ--ICDIRK 160 (265)
Q Consensus 94 ~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~d~~~l~~~~~~-------~~~~i~~~~~~np~G~--~~~l~~ 160 (265)
|.|++++|+|.+..... ..++..|++++.++. .|++++++++.+ ++++|++++|+||+|. ..++++
T Consensus 72 d~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~ 150 (338)
T cd06502 72 GSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKA 150 (338)
T ss_pred CeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHH
Confidence 99999999987653111 123447889888876 478999998864 6899999999998443 246789
Q ss_pred HHHHHHHcCCEEEEeCCcCCCC---Cc---CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc--c
Q 024619 161 IAEMAHAHGALLLVDNSIMSPV---LS---RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--G 232 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~~~~~~---~~---~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~--~ 232 (265)
|+++|+++|+++++||+|..+. .+ .....+.|+++.|+||+++.++ +++++.+++ +.+......... .
T Consensus 151 i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~~~ 226 (338)
T cd06502 151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPV---GAVVVGNRD-FIARARRRRKQAGGG 226 (338)
T ss_pred HHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCcc---ceEEECCHH-HHHHHHHHHHHhCCC
Confidence 9999999999999999874321 11 1112467899999999996543 345545544 444444333222 2
Q ss_pred CCCChhHHHHHHhccCc
Q 024619 233 SGLAPFDCWICLRGVKT 249 (265)
Q Consensus 233 ~~~~~~~~~~~~~~l~~ 249 (265)
...++..++.....|+.
T Consensus 227 ~~~~~~~~~a~~~~L~~ 243 (338)
T cd06502 227 MRQSGFLAAAGLAALEN 243 (338)
T ss_pred hhhHHHHHHHHHHHhcC
Confidence 23344444555555543
No 168
>PRK08354 putative aminotransferase; Provisional
Probab=99.88 E-value=2.7e-21 Score=165.67 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=119.9
Q ss_pred HHHHHHHHHhHhCCCceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhh
Q 024619 57 RDALESLLAKLDKADRALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASA 135 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~ 135 (265)
...+++.+++++|. .+++++|+ +++..+..++.+||.|++++|+|+.+. ..++..|.+++.++ .|++.+++.
T Consensus 42 ~~~l~~~ia~~~~~--~I~vt~G~~~al~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~~~-~d~~~l~~~ 114 (311)
T PRK08354 42 YEWLEEEFSKLFGE--PIVITAGITEALYLIGILALRDRKVIIPRHTYGEYE----RVARFFAARIIKGP-NDPEKLEEL 114 (311)
T ss_pred hHHHHHHHHHHHCC--CEEECCCHHHHHHHHHHhhCCCCeEEEeCCCcHHHH----HHHHHcCCEEeecC-CCHHHHHHh
Confidence 46678888888874 35566665 888755555568999999999999997 55677899998775 468888887
Q ss_pred cCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceee
Q 024619 136 IGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAG 211 (265)
Q Consensus 136 ~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G 211 (265)
+. +++++++++|+||||.+.+ +++|+++|+++|+++|+||+|...... .....+..+++.||||.+ +.+|+|.|
T Consensus 115 ~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~-~l~GlRiG 192 (311)
T PRK08354 115 VE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSY-GLPGIRVG 192 (311)
T ss_pred hc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhc-CCccceee
Confidence 76 5778999999999999975 678888999999999999999754432 122345789999999999 77899999
Q ss_pred EEEe
Q 024619 212 VLAV 215 (265)
Q Consensus 212 ~v~~ 215 (265)
|+++
T Consensus 193 ~~v~ 196 (311)
T PRK08354 193 YVKG 196 (311)
T ss_pred eeee
Confidence 9987
No 169
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.88 E-value=2.5e-21 Score=172.26 Aligned_cols=196 Identities=20% Similarity=0.236 Sum_probs=134.6
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcC-----CCCEEEE-cCCCCCChHHHHHh-
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLG-----TGEEIVA-GDDLYGGTDRLLSR- 112 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~-----~g~~viv-~~~~~~~~~~~~~~- 112 (265)
..|++. |.+ +++++++++.+.+|.+ +.|++++|+ +++. ++..+++ +||.|++ .+|+|+.+......
T Consensus 68 ~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~ 147 (416)
T PRK09440 68 GNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE 147 (416)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc
Confidence 568877 875 6999999998887643 567777776 8886 5566664 5899999 79999998743211
Q ss_pred -hcCCCCeEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619 113 -VTPKTGVVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPV 182 (265)
Q Consensus 113 -~~~~~g~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~ 182 (265)
.....+..+..++. .|+++++ +.++++++++++|+||||.+++ +++|+++|+++|++||+||+|+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~ 225 (416)
T PRK09440 148 DLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPF 225 (416)
T ss_pred CceeecccccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccC
Confidence 11222223322221 3677776 3567899999999999999976 6889999999999999999997422
Q ss_pred Cc----C--CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 183 LS----R--PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 183 ~~----~--~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
.. . +...+..|+++||||+ +.+|+|+||++++++.+ +.+...........+...+..+.+.+
T Consensus 226 ~~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~i~~~~l~-~~~~~~~~~~~~~~s~~~q~~~~~~l 293 (416)
T PRK09440 226 PGIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIVIADEEII-EALSNMNGIISLAPGRLGPAIAAEMI 293 (416)
T ss_pred CCcchhhcCccccCCeEEEeccccc--CCCcceEEEEeCCHHHH-HHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 11 1 1113567999999994 67899999998876544 44444444433444544444443333
No 170
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.88 E-value=1.2e-21 Score=171.14 Aligned_cols=219 Identities=16% Similarity=0.190 Sum_probs=143.6
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHh
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHL 89 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~ 89 (265)
.+++|+..-+.++ +++.+..+. ... .. ....|++.+ ..++++.++++++.+ +.+++++|+ +++..+...
T Consensus 23 ~~i~l~~~~n~~~--~~~~~~~a~-~~~-~~--~~~~Y~~~~---~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~ 93 (360)
T PRK07392 23 AILDFSASINPLG--PPESVIAAI-QSA-LS--ALRHYPDPD---YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE 93 (360)
T ss_pred cEEEeCCcCCCCC--CCHHHHHHH-HHH-HH--HhhcCCCcC---HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence 5789983224444 333333322 111 11 134566543 235666666666665 567677776 888754444
Q ss_pred cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----------CHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619 90 LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----------DLDEVASAIGPWTKLVWVESPTNPRQQICDIR 159 (265)
Q Consensus 90 ~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~ 159 (265)
+.+||.|++++|+|+.+. ..++..|.+++.++.+ +++++++.. ++++++++++||||||.+++.+
T Consensus 94 l~~g~~vlv~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~ 168 (360)
T PRK07392 94 LAQLRAVYLITPAFGDYR----RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSRE 168 (360)
T ss_pred hCCCCeEEEECCCcHHHH----HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHH
Confidence 557899999999999987 5557789999888754 244454433 4688999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeCCcCCCCCc----C----CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc
Q 024619 160 KIAEMAHAHGALLLVDNSIMSPVLS----R----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 231 (265)
Q Consensus 160 ~i~~~a~~~~~~li~D~~~~~~~~~----~----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~ 231 (265)
+|.++++++++ +|+||+|...... . ....+..++++||||.+ +.+|+|+||++++.+.+.. +.... .
T Consensus 169 ~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~~~~~~-~~~~~--~ 243 (360)
T PRK07392 169 AILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAHPDRLQR-WQQWR--D 243 (360)
T ss_pred HHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCCHHHHHH-HHhhC--C
Confidence 99999999985 6669999743321 1 11224579999999999 7789999999987755433 22221 2
Q ss_pred cCCCChhHHHHHHhccCc
Q 024619 232 GSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~ 249 (265)
....+...+..+...++.
T Consensus 244 ~~~~s~~~q~~~~~~l~~ 261 (360)
T PRK07392 244 PWPVNGLAAAAAIAALAD 261 (360)
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 244555555555444443
No 171
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=3.5e-22 Score=172.93 Aligned_cols=187 Identities=19% Similarity=0.228 Sum_probs=130.0
Q ss_pred CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619 47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124 (265)
Q Consensus 47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (265)
..|+..|. .++++.+++++|.+ +.+++++|+ +++..+...+ +||+|+++.|+|+.+. ..++..|++++.+
T Consensus 50 ~~Y~~~g~---~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v 121 (337)
T PRK03967 50 NRYPHITS---DPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-EGKHIVITPPTFGMYS----FYAKLNGIPVIDV 121 (337)
T ss_pred ccCCCCCH---HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-CCCeEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence 45654344 44555555566655 566667765 8887554444 7999999999998765 4456788899888
Q ss_pred cCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----CCCCCccEEE
Q 024619 125 NTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVM 195 (265)
Q Consensus 125 ~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----~~~~~~di~~ 195 (265)
+.+ |++.+++.. ++++++++++|+||||.+.+.++|.++++ +++++|+||+|....... ....+..+++
T Consensus 122 ~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l 199 (337)
T PRK03967 122 PLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILL 199 (337)
T ss_pred ecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEE
Confidence 753 567787754 57889999999999999999999999995 699999999997432111 1122457999
Q ss_pred eccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 196 ~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
.||||.+ +.+|+|+||++++++.+ +.+..... ....+...+..+...+
T Consensus 200 ~S~SK~~-~l~GlRiG~iv~~~~~i-~~~~~~~~--~~~~~~~~q~~~~~~l 247 (337)
T PRK03967 200 RTFSKAF-GLAGIRAGYAIANEEII-DALYRIKP--PFSLNILTMKIVRLAL 247 (337)
T ss_pred ecchHhh-cchhhhheeeecCHHHH-HHHHhhcC--CCCCCHHHHHHHHHHH
Confidence 9999999 67789999999876544 33333322 2344544444444333
No 172
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.88 E-value=9.6e-22 Score=174.26 Aligned_cols=162 Identities=27% Similarity=0.337 Sum_probs=134.4
Q ss_pred hHHHHHHHHHhHhCCC--ceEEecch-HHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKAD--RALCFTSG-MAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~~i~~~~g-~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|.+ +.+++++| ++++. ++..+ +++||+|+++++.|++....+...++..|++++.++.+
T Consensus 63 ~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~ 142 (403)
T TIGR01979 63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD 142 (403)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC
Confidence 4778889999999976 34555555 58876 44443 57899999999999987777767777889999988753
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF 201 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~ 201 (265)
|++++++++.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.+... +....+.|++++|++|+
T Consensus 143 ~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 222 (403)
T TIGR01979 143 DDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKM 222 (403)
T ss_pred CCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccc
Confidence 789999999999999999999999999999999999999999999999999988764 33456799999999998
Q ss_pred cccCCCceeeEEEeechhH
Q 024619 202 IAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~ 220 (265)
+ ||+| .|+++.+++.+
T Consensus 223 ~-gp~G--~g~l~~~~~~~ 238 (403)
T TIGR01979 223 Y-GPTG--IGVLYGKEELL 238 (403)
T ss_pred c-CCCC--ceEEEEchHHH
Confidence 7 7887 58888876543
No 173
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.88 E-value=5.5e-21 Score=168.17 Aligned_cols=199 Identities=23% Similarity=0.254 Sum_probs=151.8
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
+..+++++.+++++|.+..+++++|++|+. ++..+ +++||+|+++.++|.++. ..++..|++++.++++
T Consensus 29 ~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~ 104 (380)
T TIGR03588 29 PTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATA----NCALYCGAKVDFVDIDPDTGN 104 (380)
T ss_pred hhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence 568899999999999998899999999986 56666 789999999999998886 4456789999998863
Q ss_pred -CHHHHHhhcC----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCc----cEEEecc
Q 024619 128 -DLDEVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA----DIVMHSA 198 (265)
Q Consensus 128 -d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~----di~~~s~ 198 (265)
|+++++++++ +++++|++. |++|...|+++|.++|+++|++||+|++|+.|........+. |+.++|+
T Consensus 105 ~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~ 181 (380)
T TIGR03588 105 IDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSF 181 (380)
T ss_pred cCHHHHHHHhhcccCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEec
Confidence 7899999998 688988854 468999999999999999999999999999886432333334 9999998
Q ss_pred c--cccccCCCceeeEEEeechhHHHHHHHHHHhc-------------------------cCCCChhHHHHHHhccCchH
Q 024619 199 T--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-------------------------GSGLAPFDCWICLRGVKTMA 251 (265)
Q Consensus 199 s--K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~ 251 (265)
+ |++..+. +|+++..++.+.+..+..+... ...++...+++.+.+|+++.
T Consensus 182 ~~~K~~~~~~---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~ 258 (380)
T TIGR03588 182 HPVKIITTAE---GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLD 258 (380)
T ss_pred CCCCcccccC---ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHH
Confidence 7 8886543 6888888777766555433211 12334555666767777766
Q ss_pred hhHHHHhhchhc
Q 024619 252 LRVEKQQVCFFD 263 (265)
Q Consensus 252 ~~~~~~~~~~~~ 263 (265)
...++.++++..
T Consensus 259 ~~~~~r~~~~~~ 270 (380)
T TIGR03588 259 RFVAKRREIAAR 270 (380)
T ss_pred HHHHHHHHHHHH
Confidence 665555555543
No 174
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.88 E-value=1.1e-21 Score=173.52 Aligned_cols=161 Identities=28% Similarity=0.326 Sum_probs=131.8
Q ss_pred hHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHH---hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619 56 TRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~---~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 127 (265)
..+++++.+++++|.+ +.+++++| ++++. ++.. .+++||+|++.++.|++....+...++..|++++.++.+
T Consensus 61 ~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~ 140 (397)
T TIGR01976 61 VVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA 140 (397)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc
Confidence 4889999999999976 34555555 47764 3333 368999999999999888766666677889999888753
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|++++++++.+++++|++++|+||||.+.|+++|+++|+++|+++++|++|+.+... +..+.+.|++++|++||+
T Consensus 141 ~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 220 (397)
T TIGR01976 141 TGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFF 220 (397)
T ss_pred CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhc
Confidence 689999999888999999999999999999999999999999999999999876543 333567899999999998
Q ss_pred ccCCCceeeEEEeechhH
Q 024619 203 AGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~ 220 (265)
|++ .|+++++++.+
T Consensus 221 -g~~---~G~l~~~~~~~ 234 (397)
T TIGR01976 221 -GPH---MGILWGRPELL 234 (397)
T ss_pred -CCc---eEEEEEcHHHH
Confidence 553 69998877654
No 175
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.88 E-value=3.9e-22 Score=173.63 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 56 TRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
...++++.+++++|.+ +.+++++|+ +++. ++..++++| |.|+++.|+|+.+. ..++..|++++.++.+
T Consensus 58 ~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~v~~~~~~~ 133 (351)
T PRK01688 58 QPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRTVPTLDNWQ 133 (351)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEEeecCCCCC
Confidence 4578889999999977 567777776 8886 667778887 89999999998885 5567789999888753
Q ss_pred -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCCc-C----CCCCCccEEEeccc
Q 024619 128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVLS-R----PLELGADIVMHSAT 199 (265)
Q Consensus 128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~~-~----~~~~~~di~~~s~s 199 (265)
|++++++++ +++++|++++|+||||.+.+.+++.++++.. ++++|+||+|...... . ....+..+++.|||
T Consensus 134 ~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfS 212 (351)
T PRK01688 134 LDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLS 212 (351)
T ss_pred CCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEecch
Confidence 688898877 5899999999999999998766666655432 6899999999644321 1 11235679999999
Q ss_pred cccccCCCceeeEEEeechhH
Q 024619 200 KFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~ 220 (265)
|++ |.+|+|.|+++++++.+
T Consensus 213 K~~-glaGlRiGy~i~~~~~i 232 (351)
T PRK01688 213 KAF-ALAGLRCGFTLANEEVI 232 (351)
T ss_pred Hhh-cCHHHHHhHHhCCHHHH
Confidence 999 78899999998876554
No 176
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.87 E-value=1.1e-21 Score=169.61 Aligned_cols=158 Identities=16% Similarity=0.267 Sum_probs=122.6
Q ss_pred ChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 54 NPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 54 ~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
.+...++++.+++++|.+ +.+++++|+ +++..+..++++|+ |++.+|+|+.+. ..++..|++++.++.+
T Consensus 39 ~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~~~~~-vv~~~P~y~~y~----~~~~~~G~~v~~vp~~~~~~ 113 (332)
T PRK06425 39 EISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYINVGN-IIIVEPNFNEYK----GYAFTHGIRISALPFNLINN 113 (332)
T ss_pred CcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhCCCc-EEEeCCChHHHH----HHHHHcCCeEEEEeCCcccC
Confidence 356888999999999877 567777776 88875545677765 666699999986 6667889999999875
Q ss_pred CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc---C----CCCCCccEEEec
Q 024619 128 DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLS---R----PLELGADIVMHS 197 (265)
Q Consensus 128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~---~----~~~~~~di~~~s 197 (265)
|.+.++ ..++++|++++|+||||.+.+ +++|+++|+++|++||+||+|...... . ....+..++++|
T Consensus 114 ~~~~l~---~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~S 190 (332)
T PRK06425 114 NPEILN---NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRS 190 (332)
T ss_pred cHHHHh---hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEee
Confidence 333333 247899999999999999976 678888999999999999999744321 1 112356899999
Q ss_pred cccccccCCCceeeEEEeechhH
Q 024619 198 ATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 198 ~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
|||.+ |.+|+|+||++++++.+
T Consensus 191 fSK~~-~l~GlRiGy~v~~~~li 212 (332)
T PRK06425 191 LTKIL-GIPSLRIGYIATDDYNM 212 (332)
T ss_pred cHHhc-CCchhhheeeecCHHHH
Confidence 99999 77899999999877644
No 177
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.87 E-value=7.6e-22 Score=170.66 Aligned_cols=198 Identities=11% Similarity=0.062 Sum_probs=128.4
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCCceEEecchH-HHHHHH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKADRALCFTSGM-AALAAV 86 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~~~i~~~~g~-~al~~~ 86 (265)
.+..+++|+ .++..-..++....+.. .. ........|.+.|.+ +++++++++.+..-.++.+++++|+ +++..+
T Consensus 17 ~~~~~i~l~-~~~~~~~~p~~~~~~~~--~~-~~~~~~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 17 EKRDRTYLA-LNENPFPFPEDLVDEVF--RR-LNSDTLRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_pred CCCceeEec-CCCCCCCCCHHHHHHHH--HH-hhhhhhhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHH
Confidence 335788998 44432222222333221 11 111112225544554 3555555554432123567677776 888754
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHH-HhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEV-ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l-~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
...+ |.|++++|+|+.+. ..++..|.+++.++.++-..+ ...+ .+++++++++||||||.+.+.+++.+++
T Consensus 93 ~~~~---d~v~v~~P~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~~~~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~ 164 (335)
T PRK14808 93 MLMF---DRSVFFPPTYSCYR----IFAKAVGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_pred HHHh---CcEEECCCCHHHHH----HHHHHcCCeEEEecCCCcCCCChhHc-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence 4444 67999999999996 666788999999986521111 0112 3578999999999999999999999998
Q ss_pred HHcCCEEEEeCCcCCCCCc---C-CCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 166 HAHGALLLVDNSIMSPVLS---R-PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~---~-~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
+++++||+||+|....-. . ....+..+++.||||.+ +.+|+|+||++++++.+
T Consensus 165 -~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~~~~~ 221 (335)
T PRK14808 165 -KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSSEKFI 221 (335)
T ss_pred -hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeCHHHH
Confidence 579999999999743211 1 11234679999999999 67889999999877544
No 178
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.87 E-value=1e-21 Score=172.39 Aligned_cols=162 Identities=25% Similarity=0.275 Sum_probs=134.0
Q ss_pred hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHhcC---CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~~~---~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..+++++.+++++|.+ ++++++++++++. ++.++.. +||+|++++++|++....+...++..|++++.++.+
T Consensus 44 ~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 123 (373)
T cd06453 44 AYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD 123 (373)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC
Confidence 3678889999999877 4555555568875 6667766 899999999999987655556667789999988754
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~sK~~ 202 (265)
|++++++.+.+++++|++++++||||.+.|+++|.++|+++|+++++|++|+.+.... ....+.|++++|++|++
T Consensus 124 ~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 203 (373)
T cd06453 124 DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKML 203 (373)
T ss_pred CCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccccc
Confidence 8999999998899999999999999999999999999999999999999998776642 33557899999999999
Q ss_pred ccCCCceeeEEEeechhH
Q 024619 203 AGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~ 220 (265)
++ +| +|+++.+++.+
T Consensus 204 ~~-~g--~g~~~~~~~~~ 218 (373)
T cd06453 204 GP-TG--IGVLYGKEELL 218 (373)
T ss_pred CC-CC--cEEEEEchHHh
Confidence 65 55 58888877544
No 179
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.87 E-value=7.2e-21 Score=167.14 Aligned_cols=198 Identities=20% Similarity=0.252 Sum_probs=148.2
Q ss_pred ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
.|...++++.+++++|.+.++++++|++|+. ++..+ +++||+|++++++|.++.. .+...|++++.++++
T Consensus 32 g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~----~~~~~G~~~v~vd~~~~~~ 107 (379)
T PRK11658 32 GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLN----MIVLLGATPVMVDVDRDTL 107 (379)
T ss_pred CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHH----HHHHcCCEEEEEecCCCcC
Confidence 3679999999999999998999999999986 66677 7899999999999998863 345679999998753
Q ss_pred --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC---CCCCCccEEEecccccc
Q 024619 128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---PLELGADIVMHSATKFI 202 (265)
Q Consensus 128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---~~~~~~di~~~s~sK~~ 202 (265)
|++++++++.+++++|+ |.|++|...|+++|.++|+++|+++|+|++|+.|.... ....+.+++.++.+|.+
T Consensus 108 ~~d~~~l~~~i~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l 184 (379)
T PRK11658 108 MVTPEAIEAAITPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNI 184 (379)
T ss_pred CcCHHHHHHhcccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcC
Confidence 78999999998999988 55679999999999999999999999999999876532 22345566666666877
Q ss_pred ccCCCceeeEEEeechhHHHHHHHHHHhc----------------------c--CCCChhHHHHHHhccCchHhhHHHHh
Q 024619 203 AGHSDVMAGVLAVKGERLAKELYFLQNAE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQ 258 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~----------------------~--~~~~~~~~~~~~~~l~~~~~~~~~~~ 258 (265)
.++ .+|+++.+++.+.+..+.....+ + ..++...+++.+.+++++....++.+
T Consensus 185 ~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~ 261 (379)
T PRK11658 185 TCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRR 261 (379)
T ss_pred ccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 36888887666665554433211 0 12344556666666766655444444
Q ss_pred hch
Q 024619 259 VCF 261 (265)
Q Consensus 259 ~~~ 261 (265)
+++
T Consensus 262 ~~a 264 (379)
T PRK11658 262 EIA 264 (379)
T ss_pred HHH
Confidence 433
No 180
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.87 E-value=1.9e-21 Score=172.13 Aligned_cols=163 Identities=21% Similarity=0.189 Sum_probs=135.9
Q ss_pred hhHHHHHHHHHhHhCCC--c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
..++++++.+++++|.+ + +++.++|++++. ++..++++||+|++.++.|++.. |...++..|.+++.++.+
T Consensus 42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~ 119 (401)
T PLN02409 42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQ 119 (401)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCC
Confidence 35899999999999876 3 455556678876 66778999999999998887653 446667789898888753
Q ss_pred --CHHHHHhhcCC----CceEEEEecCCCCccccccHHHHHHH--HHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619 128 --DLDEVASAIGP----WTKLVWVESPTNPRQQICDIRKIAEM--AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA 198 (265)
Q Consensus 128 --d~~~l~~~~~~----~~~~i~~~~~~np~G~~~~l~~i~~~--a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~ 198 (265)
|++++++++++ ++++|++++++|+||.+.|+++|.++ |+++|+++++|++++.|... +..+++.|+++.|.
T Consensus 120 ~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~ 199 (401)
T PLN02409 120 GADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGS 199 (401)
T ss_pred CCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcC
Confidence 68999998875 78999999999999999999999999 99999999999999988765 33456899999999
Q ss_pred ccccccCCCceeeEEEeechhHH
Q 024619 199 TKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
+||+++|+| .|+++.+++.+.
T Consensus 200 ~K~l~~P~G--~G~l~~~~~~~~ 220 (401)
T PLN02409 200 QKALSLPTG--LGIVCASPKALE 220 (401)
T ss_pred ccccCcCCC--cceeEECHHHHH
Confidence 999999888 599988876543
No 181
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.87 E-value=4.2e-21 Score=171.24 Aligned_cols=162 Identities=27% Similarity=0.306 Sum_probs=134.5
Q ss_pred hHHHHHHHHHhHhCCC--ceEEecch-HHHHHH-HHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKAD--RALCFTSG-MAALAA-VTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~~i~~~~g-~~al~~-~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|.+ +.+++++| ++++.. +.. .+++||+|++++++|++....|...++..|++++.++.+
T Consensus 77 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~ 156 (424)
T PLN02855 77 AYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT 156 (424)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4678899999999974 45555555 588864 433 368899999999999988777777778889999888753
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF 201 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~ 201 (265)
|++++++.+.+++++|++++++||||.+.|+++|+++|+++|+++++|++|+.|... +....+.|++++|++|+
T Consensus 157 ~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~ 236 (424)
T PLN02855 157 PDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKM 236 (424)
T ss_pred CCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccc
Confidence 789999999889999999999999999999999999999999999999999887664 33355789999999996
Q ss_pred cccCCCceeeEEEeechhH
Q 024619 202 IAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~ 220 (265)
+ ||+| .|+++.+++.+
T Consensus 237 ~-gp~G--~G~l~~~~~~~ 252 (424)
T PLN02855 237 C-GPTG--IGFLWGKSDLL 252 (424)
T ss_pred c-CCCc--cEEEEEchhhh
Confidence 5 7888 59998887554
No 182
>PRK02948 cysteine desulfurase; Provisional
Probab=99.87 E-value=1.7e-21 Score=171.41 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=131.0
Q ss_pred hHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhc----CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLL----GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~----~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..+++++.+++++|.+ +.+++++| ++++. ++..++ ++|+.|+++...|+++...+. .++..|++++.++.+
T Consensus 44 ~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~~ 122 (381)
T PRK02948 44 LLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQ-SLESQGYTVTEIPVDK 122 (381)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHH-HHHhCCCEEEEEeeCC
Confidence 4788999999999865 56666666 58875 455554 578999999999998877763 456789898888753
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|++++++.+.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.|..+ +....+.|+++.|+||++
T Consensus 123 ~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~ 202 (381)
T PRK02948 123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY 202 (381)
T ss_pred CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcC
Confidence 789999999888999999999999999999999999999999999999999887654 234568999999999987
Q ss_pred ccCCCceeeEEEeechh
Q 024619 203 AGHSDVMAGVLAVKGER 219 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~ 219 (265)
||+| .|+++.+++.
T Consensus 203 -gp~G--~G~l~~~~~~ 216 (381)
T PRK02948 203 -GPKG--VGAVYINPQV 216 (381)
T ss_pred -CCCc--EEEEEEcCCC
Confidence 6888 4887776653
No 183
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.87 E-value=2.7e-21 Score=168.82 Aligned_cols=199 Identities=20% Similarity=0.254 Sum_probs=147.0
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCC-hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGN-PTRDALESLLAKLDKADRALCFTSGMAALA-AVTH 88 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~ 88 (265)
.++||-...-..+|.+.+|.-....+.... . .|. +. ..++++++++++++|.+++++++++++|+. ++.+
T Consensus 8 ~~~ina~g~~t~~g~s~~~~~v~~a~~~~~----~--~~~--~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~a 79 (363)
T TIGR01437 8 KKVINASGKMTILGVSTVSDEVADAQKRGA----Q--NYF--EIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAA 79 (363)
T ss_pred ceEEECCcEeecCCCCCCCHHHHHHHHHHH----h--cCC--CHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHH
Confidence 457776544455665544432222222111 0 122 22 459999999999999998888888889986 7788
Q ss_pred hcCCCC---------------EEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---CCHHHHHhhcCCCceEEE-EecCC
Q 024619 89 LLGTGE---------------EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT---CDLDEVASAIGPWTKLVW-VESPT 149 (265)
Q Consensus 89 ~~~~g~---------------~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~d~~~l~~~~~~~~~~i~-~~~~~ 149 (265)
++++|| +|+++.|.|..+...+...+...|+++++++. .|++++++++++++++++ +++++
T Consensus 80 l~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~ 159 (363)
T TIGR01437 80 VITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHH 159 (363)
T ss_pred HhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCC
Confidence 898888 89998877765532223555778999998874 489999999999999766 68889
Q ss_pred CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619 150 NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 150 np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
||+|.+.|+++|.++|+++|+++++|++|+... ......+.|++++|+||++.||. +|+++.+++.+.
T Consensus 160 ~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~D~~~~S~~K~l~gp~---~G~l~~~~~~i~ 227 (363)
T TIGR01437 160 CVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGADLVIYSGAKAIEGPT---SGLVLGKKKYIE 227 (363)
T ss_pred CCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCCCEEEEeCCcccCCCc---eEEEEEcHHHHH
Confidence 999999999999999999999999999998322 22234578999999999997764 688887665443
No 184
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.87 E-value=1.6e-21 Score=166.94 Aligned_cols=194 Identities=21% Similarity=0.203 Sum_probs=156.5
Q ss_pred CCCCCCCCCCeeeccccccCCCCCCCCCc-cCCCCChhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHh-cCCCC
Q 024619 20 FDPYGALSTPLYQTATFKQPSATENGPYD-YTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHL-LGTGE 94 (265)
Q Consensus 20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~-~~~g~ 94 (265)
+...++.++.++.+..-.......+++.. |...-.+..++.++.++++.|++ ..|+|++| +++++ ++..+ ...+|
T Consensus 49 ~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~ 128 (428)
T KOG1549|consen 49 NQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGD 128 (428)
T ss_pred cCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccc
Confidence 33567777777777653333345555555 55554456899999999999998 23666655 59887 45554 23345
Q ss_pred ----EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 95 ----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 95 ----~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+|++...+|++....+ ...+..|.+++++|.. |.+.+++.++++|++|.+.+.+|.+|.+.|+++|+++|
T Consensus 129 ~~~k~iitl~~eH~~v~~s~-~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~ic 207 (428)
T KOG1549|consen 129 KTKKHIITLQTEHPCVLDSC-RALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKIC 207 (428)
T ss_pred cccceEEEecccCcchhHHH-HHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHh
Confidence 8999999999998887 5567788999999865 79999999999999999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619 166 HAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
++.++.+++|.+|+.|... +..+.++|++..|.|||+ ||+| +|+++++.
T Consensus 208 r~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~y-gp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 208 REEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIY-GPPG--IGALYVRR 257 (428)
T ss_pred CcCCcEEEeehhhhcCCccccHHHcCchheeeeccccc-CCCc--ceEEEEcc
Confidence 9999999999999999986 666889999999999999 6777 69998886
No 185
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.87 E-value=2.8e-21 Score=168.96 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=121.7
Q ss_pred HHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 57 RDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
..++++.+++++|.+ +.+++++|+ +++. ++..++++| +.|++++|.|..+. ..++..|.+++.+++.
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~ 136 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEVPLVDGADG 136 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEEecCCCccC
Confidence 467777788888876 467777775 8886 667778888 79999999987665 4456778999988752
Q ss_pred ---CHHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHH--cCCEEEEeCCcCCCCCc-C----CCCCCccEEEe
Q 024619 128 ---DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHA--HGALLLVDNSIMSPVLS-R----PLELGADIVMH 196 (265)
Q Consensus 128 ---d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~--~~~~li~D~~~~~~~~~-~----~~~~~~di~~~ 196 (265)
|++++.+.+ .+++++|++++|+||||.+.+.+++.++++. ++++||+||+|...... . ....+..++++
T Consensus 137 ~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~ 216 (364)
T PRK04781 137 FHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLR 216 (364)
T ss_pred CCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEEEEe
Confidence 466765544 5789999999999999999998777777664 37899999999744321 1 12235679999
Q ss_pred ccccccccCCCceeeEEEeechhH
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
||||.+ |.+|+|.||++.+++.+
T Consensus 217 SfSK~~-gl~GlRvGy~v~~~~l~ 239 (364)
T PRK04781 217 TLSKAH-ALAAARIGSLIANAELI 239 (364)
T ss_pred cChhhc-ccccceeeeeeCCHHHH
Confidence 999999 77889999999876544
No 186
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.87 E-value=8.7e-22 Score=171.64 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=125.8
Q ss_pred CccCCCCChhHHHHHHHHHhHhCCC-ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619 47 YDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122 (265)
Q Consensus 47 ~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~ 122 (265)
..|+..+ ..++++.+++++|.+ +.|++++|+ +++. ++..++++| |+|++++|+|+.+. ..++..|++++
T Consensus 55 ~~Yp~~~---~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~ 127 (354)
T PRK04635 55 NRYPECQ---PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVK 127 (354)
T ss_pred ccCCCCC---HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEE
Confidence 3455443 466777777888876 567777776 8886 666778888 89999999998875 44577899999
Q ss_pred eecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCCCc-C----CCCCCc
Q 024619 123 RVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPVLS-R----PLELGA 191 (265)
Q Consensus 123 ~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~~~-~----~~~~~~ 191 (265)
.++.+ |++.+++ + +++++|++++|+||||.+.+.+++.++++.. +++||+||+|...... . ....+.
T Consensus 128 ~v~~~~~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~ 205 (354)
T PRK04635 128 ALPLTADYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPN 205 (354)
T ss_pred EEecCCCCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCC
Confidence 88764 5666753 3 6899999999999999999998888888764 6999999999643321 1 112245
Q ss_pred cEEEeccccccccCCCceeeEEEeechhH
Q 024619 192 DIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.+++.||||++ |.+|+|.|+++++++.+
T Consensus 206 ~iv~~S~SK~~-~l~GlRlG~~i~~~~~~ 233 (354)
T PRK04635 206 LVVLRTLSKAF-ALAGARCGFTLANEELI 233 (354)
T ss_pred EEEEechHHHh-hhhHHHHhhhhCCHHHH
Confidence 68999999999 77889999998876554
No 187
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.87 E-value=1e-20 Score=170.17 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=123.5
Q ss_pred ccCC-CCC-hhHHHHHH-HHHhHhC----CCc--eEEecchH-HHHH-HHHH-----hcCCCCEEEEcCCCCCChHHHHH
Q 024619 48 DYTR-SGN-PTRDALES-LLAKLDK----ADR--ALCFTSGM-AALA-AVTH-----LLGTGEEIVAGDDLYGGTDRLLS 111 (265)
Q Consensus 48 ~y~~-~g~-~~~~~l~~-~l~~~~g----~~~--~i~~~~g~-~al~-~~~~-----~~~~g~~viv~~~~~~~~~~~~~ 111 (265)
.|+. .|. +.++++.. ++.+.++ .++ .+++++|+ +|+. ++.+ +++|||+|++.+|.|+.|.....
T Consensus 123 ~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~ 202 (521)
T TIGR03801 123 NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE 202 (521)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH
Confidence 4754 355 45777664 5555432 122 56666655 8885 5554 68999999999999999974431
Q ss_pred hhcCCCCeEEEeecCC------------CHHHHHhhcCCCceEEEEecCCCCcccccc---HHHHHHHHHHc--CCEEEE
Q 024619 112 RVTPKTGVVVKRVNTC------------DLDEVASAIGPWTKLVWVESPTNPRQQICD---IRKIAEMAHAH--GALLLV 174 (265)
Q Consensus 112 ~~~~~~g~~~~~~~~~------------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~--~~~li~ 174 (265)
....|.+++.++.+ |.+++++++.+++++|++++|+||||.+.+ +++|+++|++| +++||+
T Consensus 203 --l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~ 280 (521)
T TIGR03801 203 --LPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILT 280 (521)
T ss_pred --HhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 23346777766532 568898888889999999999999999976 78889999987 999999
Q ss_pred eCCcCCCCCc--CCC--CCCccEEEeccccccccCCCceeeEEEeech
Q 024619 175 DNSIMSPVLS--RPL--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 175 D~~~~~~~~~--~~~--~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
||+|+.-... +.. ..+..+++.|+||.+ |.+|+|.|+++.+++
T Consensus 281 DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f-g~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 281 DDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF-GATGWRLGTIALHKD 327 (521)
T ss_pred CCCchhhcccccchhhhCCCCEEEEEcchhhc-cCchhhhhhhhcCch
Confidence 9999743221 111 124679999999999 778999999998865
No 188
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.87 E-value=2e-20 Score=162.06 Aligned_cols=192 Identities=25% Similarity=0.329 Sum_probs=139.1
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhC----CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDK----ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g----~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
.+.|... |.. .++.+++.+...++ .++.+++++|++++. ++..+.++||+|++++++|+++.. .++..|
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~----~~~~~~ 104 (350)
T cd00609 29 LLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA----AARLAG 104 (350)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH----HHHHCC
Confidence 3445555 554 47777888777765 445666666778886 667778889999999999999874 446677
Q ss_pred eEEEeecCC-----CH--HHHHhhcCCCceEEEEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCCCCCc----
Q 024619 119 VVVKRVNTC-----DL--DEVASAIGPWTKLVWVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMSPVLS---- 184 (265)
Q Consensus 119 ~~~~~~~~~-----d~--~~l~~~~~~~~~~i~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~~~~~---- 184 (265)
.+++.++.. +. +.++....+++++|++++++||+|.+.|+ ++|+++|+++|+++|+|++|+.+...
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~ 184 (350)
T cd00609 105 AEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP 184 (350)
T ss_pred CEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc
Confidence 888888754 12 56666667889999999999999999875 45568999999999999999765432
Q ss_pred ----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 185 ----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 185 ----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
.....+.|++++|++|++ +.+|.+.|++++++..+.+.+...........+......
T Consensus 185 ~~~~~~~~~~~~~~~~s~~K~~-~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (350)
T cd00609 185 PALALLDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAA 245 (350)
T ss_pred ccccCcCccCcEEEEeeccccc-CCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 123446789999999999 455678899998885555555555444434444444433
No 189
>PLN02672 methionine S-methyltransferase
Probab=99.86 E-value=6.2e-21 Score=181.82 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=146.7
Q ss_pred ceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCCh-hHHHHHHHHHhHhCCC----ceEEecchH-HHH
Q 024619 10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNP-TRDALESLLAKLDKAD----RALCFTSGM-AAL 83 (265)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~-~al 83 (265)
+..+|+++ .++..-+.++.+.++.. .... .. .+ ..|.+ .++++++++++.+|.+ +.+++++|+ +++
T Consensus 696 g~~vI~Ls-inE~d~ppPp~V~eAi~-eal~---~~--~~-s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL 767 (1082)
T PLN02672 696 ESSLIHMD-VDESFLPVPSAVKASIF-ESFV---RQ--NI-SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF 767 (1082)
T ss_pred CCCEEEEe-CCCCCCCCCHHHHHHHH-HHHh---hc--CC-CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence 35688888 55543333333333321 1110 11 11 12444 4899999999998765 368888887 667
Q ss_pred H-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------CHHHHHhhcCC-CceEEEEecCC-CCcc
Q 024619 84 A-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------DLDEVASAIGP-WTKLVWVESPT-NPRQ 153 (265)
Q Consensus 84 ~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------d~~~l~~~~~~-~~~~i~~~~~~-np~G 153 (265)
. ++..++++||.|+++.|+|+.+. ..++..|.+++.++++ |++++++++.+ +.+.|++++|+ ||||
T Consensus 768 ~lll~aLl~pGD~VLVp~PtY~~Y~----~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG 843 (1082)
T PLN02672 768 NKLVLCCVQEGGTLCFPAGSNGTYV----SAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTG 843 (1082)
T ss_pred HHHHHHHcCCCCEEEEeCCChHHHH----HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcC
Confidence 5 67888999999999999999997 5567789999998863 57889988865 45689999997 9999
Q ss_pred cccc---HHHHHHHHHHcCCEEEEeCCcCCCCCc-CC---------C-C------CCccEEEeccccccccCCCceeeEE
Q 024619 154 QICD---IRKIAEMAHAHGALLLVDNSIMSPVLS-RP---------L-E------LGADIVMHSATKFIAGHSDVMAGVL 213 (265)
Q Consensus 154 ~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~-~~---------~-~------~~~di~~~s~sK~~~g~~g~~~G~v 213 (265)
.+.+ +++|+++|++||++||+||+|+.-.+. .. . . ....++++||||.+ +.+|+|+||+
T Consensus 844 ~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGyl 922 (1082)
T PLN02672 844 LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFL 922 (1082)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeE
Confidence 9965 788999999999999999999733221 00 0 0 12468999999999 6789999999
Q ss_pred EeechhHHHHHHH
Q 024619 214 AVKGERLAKELYF 226 (265)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (265)
++++..+.+.+..
T Consensus 923 Iap~~eLi~~l~~ 935 (1082)
T PLN02672 923 ALNDSVLIDAFHS 935 (1082)
T ss_pred EeCCHHHHHHHHH
Confidence 9877645454443
No 190
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.86 E-value=5.8e-21 Score=166.89 Aligned_cols=200 Identities=23% Similarity=0.256 Sum_probs=152.6
Q ss_pred ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
.+..+++++.+++++|.+.++.++||+.|+. ++.++ +++||+|+++..+++++. ......|++++++|++
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~----~ai~~~G~~pv~~Di~~~~~ 99 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATA----SAILWAGAEPVFVDIDPETL 99 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHH----HHHHHTT-EEEEE-BETTTS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHH----HHHHHhccEEEEEeccCCcC
Confidence 4789999999999999999999999999997 45555 679999999999999887 4456789999999965
Q ss_pred --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC--CCCCCccEEEecc--ccc
Q 024619 128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSA--TKF 201 (265)
Q Consensus 128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~--~~~~~~di~~~s~--sK~ 201 (265)
|++++++++.+++++|++.+. -|...|+++|.++|+++|++||+|.+|+.|.... ....-.|+.++|| +|.
T Consensus 100 ~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~ 176 (363)
T PF01041_consen 100 NIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKI 176 (363)
T ss_dssp SB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSS
T ss_pred CcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCC
Confidence 899999999999999997655 7888899999999999999999999999987532 2333459999997 588
Q ss_pred cccCCCceeeEEEeechhHHHHHHHHHHhc-----------------cCCCChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619 202 IAGHSDVMAGVLAVKGERLAKELYFLQNAE-----------------GSGLAPFDCWICLRGVKTMALRVEKQQVCFFD 263 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (265)
+.... +|+++++++.+.+....+...+ ...++...+++.+.+|+++....++.++++..
T Consensus 177 i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~ 252 (363)
T PF01041_consen 177 ITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR 252 (363)
T ss_dssp S-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 85443 6999999988877776655322 13466788889999999998877777776653
No 191
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.86 E-value=9.4e-21 Score=165.21 Aligned_cols=163 Identities=22% Similarity=0.243 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHhHhCCC--c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
...+++++.+++++|.+ + .+++++|++++. ++..++++||+|++..++|.+.. +...++..|.+++.++.+
T Consensus 32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 109 (356)
T cd06451 32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGE 109 (356)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCC
Confidence 45889999999999984 3 445556688886 66778899999999988776532 224556778888888643
Q ss_pred --CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619 128 --DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA 203 (265)
Q Consensus 128 --d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~ 203 (265)
|++++++.+++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++|+.|... +....+.|+++.|++||++
T Consensus 110 ~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~ 189 (356)
T cd06451 110 AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALG 189 (356)
T ss_pred CCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhcc
Confidence 78999999986 8999999999999999999999999999999999999999877643 3335578999999999998
Q ss_pred cCCCceeeEEEeechhHH
Q 024619 204 GHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 204 g~~g~~~G~v~~~~~~~~ 221 (265)
+|+| +|+++.+++.+.
T Consensus 190 ~p~g--~G~l~~~~~~~~ 205 (356)
T cd06451 190 APPG--LGPIAFSERALE 205 (356)
T ss_pred CCCC--cceeEECHHHHH
Confidence 8877 599988876543
No 192
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.86 E-value=5.8e-20 Score=161.31 Aligned_cols=196 Identities=16% Similarity=0.120 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
+.++++++++++++|.+.++++++|++|+. ++..+ +++||+|+++.++|+++. ..+...|++++.++.+
T Consensus 31 ~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~----~~~~~~G~~~v~~d~d~~~~~ 106 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRPDTMN 106 (375)
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHH----HHHHHcCCEEEEEecCCCcCC
Confidence 568999999999999998999999999986 44544 789999999999999887 4446679999998753
Q ss_pred -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CCCCCCccEEEeccc--ccc
Q 024619 128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFI 202 (265)
Q Consensus 128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~~~~~~di~~~s~s--K~~ 202 (265)
|++++++++.+++++|+++ |++|...++++|.++|+++|++||+|++|+.+... .+.....|+.++||+ |.+
T Consensus 107 ~d~~~le~~i~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l 183 (375)
T PRK11706 107 IDETLIEAAITPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNY 183 (375)
T ss_pred cCHHHHHHhcCCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccc
Confidence 7899999998899999876 46899999999999999999999999999988642 222333578888877 998
Q ss_pred ccCCCceeeEEEeechhHHHHHHHHHHh---------------------ccCCCChhHHHHHHhccCchHhhHHHHhhc
Q 024619 203 AGHSDVMAGVLAVKGERLAKELYFLQNA---------------------EGSGLAPFDCWICLRGVKTMALRVEKQQVC 260 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (265)
.. |. +|+++..++.+.+....++.. ....++...++..+.+++.+....++.+++
T Consensus 184 ~~--g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~ 259 (375)
T PRK11706 184 TA--GE-GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL 259 (375)
T ss_pred cc--cC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33 465556666666555444421 111234556677777777765444444443
No 193
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=4.3e-20 Score=158.58 Aligned_cols=197 Identities=24% Similarity=0.241 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
+..+++++.+++++|+..++.++||+.|+. +++++ +.|||+||++..+|..+. ......|++++++|++
T Consensus 34 ~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATa----n~i~~~Ga~PVFvDid~~T~n 109 (374)
T COG0399 34 PFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATA----NAVLLVGAKPVFVDIDPDTLN 109 (374)
T ss_pred hHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHH----HHHHHcCCeEEEEecCCcccC
Confidence 678999999999999999999999999997 45544 899999999999998886 4446689999999976
Q ss_pred -CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCC--CccEEEecc--cccc
Q 024619 128 -DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLEL--GADIVMHSA--TKFI 202 (265)
Q Consensus 128 -d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~--~~di~~~s~--sK~~ 202 (265)
|++.+++++++++|+|+..+. -|...|+++|.++|++||++||+|.+|+.|..-..... --|+.++|| +|.+
T Consensus 110 id~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~i 186 (374)
T COG0399 110 IDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNL 186 (374)
T ss_pred CCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCc
Confidence 899999999999999996554 78889999999999999999999999999886433322 247888885 6877
Q ss_pred ccCCCceeeEEEeechhHHHHHHHHHHhcc----------------CCCChhHHHHHHhccCchHhhHHHHhhch
Q 024619 203 AGHSDVMAGVLAVKGERLAKELYFLQNAEG----------------SGLAPFDCWICLRGVKTMALRVEKQQVCF 261 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (265)
... -||+++.+++.+.+..+.+...+. ..++..++++.+.+|+++.....+.++++
T Consensus 187 ttg---EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a 258 (374)
T COG0399 187 TTG---EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIA 258 (374)
T ss_pred ccc---CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 379999999998887776665333 23445677888888888765555555444
No 194
>PLN02651 cysteine desulfurase
Probab=99.86 E-value=2.2e-20 Score=163.45 Aligned_cols=161 Identities=22% Similarity=0.240 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhHhCCC-ceEEe-cchHHHHH-HHHH----hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD-RALCF-TSGMAALA-AVTH----LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~-~~g~~al~-~~~~----~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..+++++.+++++|++ +.+++ +++++++. ++.. +.++||+|++.+..|+++...+... +..|++++.++.+
T Consensus 44 ~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~-~~~g~~v~~v~~~~ 122 (364)
T PLN02651 44 AVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHL-QQEGFEVTYLPVKS 122 (364)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHH-HhcCCEEEEEccCC
Confidence 4778899999999986 44444 45568764 3333 3578999999999999887776444 4678888888753
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|+++++++++++++++++++++|+||.+.|+++|.++|+++|+++++|++|+.|..+ +....+.|+++.|.+||
T Consensus 123 ~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~- 201 (364)
T PLN02651 123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI- 201 (364)
T ss_pred CCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-
Confidence 789999999999999999999999999999999999999999999999999998765 45567899999999998
Q ss_pred ccCCCceeeEEEeechhH
Q 024619 203 AGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~ 220 (265)
+||+| .|+++.+++..
T Consensus 202 ~gp~G--~g~l~v~~~~~ 217 (364)
T PLN02651 202 YGPKG--VGALYVRRRPR 217 (364)
T ss_pred CCCCc--eEEEEEcCCCC
Confidence 58888 48888887543
No 195
>PRK08637 hypothetical protein; Provisional
Probab=99.86 E-value=4.6e-20 Score=162.73 Aligned_cols=169 Identities=15% Similarity=0.201 Sum_probs=123.3
Q ss_pred CCCCccCCC-CCh-hHHHHHHHHHhHhC---CC--ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhc
Q 024619 44 NGPYDYTRS-GNP-TRDALESLLAKLDK---AD--RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVT 114 (265)
Q Consensus 44 ~~~~~y~~~-g~~-~~~~l~~~l~~~~g---~~--~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~ 114 (265)
...+.|++. |.+ +++.+.+++.+..+ .+ +.+++++|+ +++. ++..++++||.|++++|+|+.+...+ .
T Consensus 35 ~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~---~ 111 (388)
T PRK08637 35 DEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTF---N 111 (388)
T ss_pred ccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH---H
Confidence 355788887 876 58888888876532 22 346677775 8886 66777899999999999999997322 2
Q ss_pred CCCCeEEEeecC--C----CHHHHHhhcC----CCceEEEEecCCCCcccccc---HHHHHHHHHH-----cCCEEEEeC
Q 024619 115 PKTGVVVKRVNT--C----DLDEVASAIG----PWTKLVWVESPTNPRQQICD---IRKIAEMAHA-----HGALLLVDN 176 (265)
Q Consensus 115 ~~~g~~~~~~~~--~----d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~-----~~~~li~D~ 176 (265)
...|.+++.+++ + |++++++.++ +...++++++||||||.+.+ +++|+++|++ ++++||+||
T Consensus 112 ~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De 191 (388)
T PRK08637 112 TRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD 191 (388)
T ss_pred HhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 346888888876 2 6888888765 45567788999999999975 6778887775 899999999
Q ss_pred CcCCCCCc-----C---C--CCCCcc--EEEeccccccccCCCceeeEEEee
Q 024619 177 SIMSPVLS-----R---P--LELGAD--IVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 177 ~~~~~~~~-----~---~--~~~~~d--i~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
+|....+. . . ...+.. +.+.|+||.+ +.+|+|+||++.+
T Consensus 192 ~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~ 242 (388)
T PRK08637 192 AYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFITFG 242 (388)
T ss_pred cchhcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEEEEc
Confidence 99743321 0 0 011232 4456999988 5678999999865
No 196
>PRK14012 cysteine desulfurase; Provisional
Probab=99.85 E-value=2.7e-20 Score=165.07 Aligned_cols=160 Identities=22% Similarity=0.236 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..+++++.+++++|.+ + ++++++|++++. ++..+ ..+||+|++++++|+++...+.. ++..|++++.++.+
T Consensus 50 ~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~-~~~~g~~~~~v~~~~ 128 (404)
T PRK14012 50 AVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLDPQS 128 (404)
T ss_pred HHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHH-HHhCCCEEEEEccCC
Confidence 4778899999999986 3 566666678875 44444 47899999999999988766643 34568898888753
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.|... +....+.|++++|++|.+
T Consensus 129 ~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~ 208 (404)
T PRK14012 129 NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY 208 (404)
T ss_pred CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc
Confidence 899999999999999999999999999999999999999999999999999988775 444567999999999976
Q ss_pred ccCCCceeeEEEeechh
Q 024619 203 AGHSDVMAGVLAVKGER 219 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~ 219 (265)
||+| .|+++.+++.
T Consensus 209 -gp~g--~G~l~~~~~~ 222 (404)
T PRK14012 209 -GPKG--IGALYVRRKP 222 (404)
T ss_pred -CCCc--eEEEEEecCC
Confidence 6766 4666666543
No 197
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.85 E-value=3.1e-20 Score=161.86 Aligned_cols=160 Identities=26% Similarity=0.282 Sum_probs=131.0
Q ss_pred hHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhc----CCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLL----GTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~----~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|.+ +.+++++| ++++. ++..+. .+| +.|+++...|+++...+.. ++..|++++.++.+
T Consensus 43 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~-~~~~G~~v~~v~~~ 121 (353)
T TIGR03235 43 AVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRA-LERNGFTVTYLPVD 121 (353)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHH-HHhcCCEEEEEccC
Confidence 3678999999999986 45556655 58875 555554 356 7899999899988777643 35679999988753
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC-CCCCccEEEeccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKF 201 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~-~~~~~di~~~s~sK~ 201 (265)
|++++++.+.+++++|++++++||||.+.|+++|.++|+++|+++++|++|+.|..... ...++|++++|++||
T Consensus 122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~ 201 (353)
T TIGR03235 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKI 201 (353)
T ss_pred CCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhc
Confidence 78999999988899999999999999999999999999999999999999998877533 345799999999998
Q ss_pred cccCCCceeeEEEeechh
Q 024619 202 IAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~ 219 (265)
+ ||+| .|+++.+++.
T Consensus 202 ~-gp~g--~g~l~~~~~~ 216 (353)
T TIGR03235 202 Y-GPKG--IGALVIRKRG 216 (353)
T ss_pred C-CCCc--eEEEEEccCc
Confidence 6 7888 4888888753
No 198
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.85 E-value=8.3e-21 Score=166.53 Aligned_cols=165 Identities=27% Similarity=0.388 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHhHhCCCc---eEEecchHHHHH-HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-
Q 024619 55 PTRDALESLLAKLDKADR---ALCFTSGMAALA-AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT- 126 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~---~i~~~~g~~al~-~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 126 (265)
...+++++.+++++|++. ++++.+++.++. ++.++ .++|++|++....|++....|..+.+..|+++..++.
T Consensus 43 ~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~ 122 (371)
T PF00266_consen 43 EILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD 122 (371)
T ss_dssp HHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG
T ss_pred HHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 358899999999999875 445555568886 56666 6899999999999999998888888888999988874
Q ss_pred ----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619 127 ----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF 201 (265)
Q Consensus 127 ----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~ 201 (265)
.|++++++.+.+++++|++++.+|.+|.+.|+++|.++||++|+++++|.+++.|... +..+.++|++++|.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K- 201 (371)
T PF00266_consen 123 PGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK- 201 (371)
T ss_dssp TTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-
T ss_pred ccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccc-
Confidence 3899999999999999999999999999999999999999999999999999999886 4456689999999999
Q ss_pred cccCCCceeeEEEeechhHHH
Q 024619 202 IAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~ 222 (265)
++||+|+ |+++.+++.+..
T Consensus 202 l~gp~G~--g~l~v~~~~~~~ 220 (371)
T PF00266_consen 202 LGGPPGL--GFLYVRPEAIER 220 (371)
T ss_dssp TTSSSTE--EEEEEEHHHHHH
T ss_pred cCCCCch--hhheehhhhhhc
Confidence 8899995 999998865433
No 199
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.85 E-value=1.1e-20 Score=160.69 Aligned_cols=157 Identities=22% Similarity=0.278 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------ 126 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------ 126 (265)
...+++++.+++++|++..+++++|+ +++. ++.+++++||+|++++++|.+....+ ...|+++++++.
T Consensus 59 g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~~~~~~~~ 134 (294)
T cd00615 59 GPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVYLKPERNPYY 134 (294)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEEecCccCccc
Confidence 35899999999999999877756664 7775 77888999999999999998887443 456888887753
Q ss_pred -----CCHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-----Cc-CCCCCCccE
Q 024619 127 -----CDLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADI 193 (265)
Q Consensus 127 -----~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-----~~-~~~~~~~di 193 (265)
.|++++++++. +++++|++++| |++|.+.|+++|+++|+++|+++++|++|+... .. .....+.|+
T Consensus 135 ~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~di 213 (294)
T cd00615 135 GIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADI 213 (294)
T ss_pred CcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcE
Confidence 37899999885 46899999998 789999999999999999999999999997532 11 233457999
Q ss_pred EEeccccccccCCCceeeEEEeech
Q 024619 194 VMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
++.|+||+++|+.+ +|++..++.
T Consensus 214 v~~S~hK~l~g~~~--~~~l~~~~~ 236 (294)
T cd00615 214 VVQSTHKTLPALTQ--GSMIHVKGD 236 (294)
T ss_pred EEEchhcccchHhH--HHHHHhCCC
Confidence 99999999966542 466666554
No 200
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.85 E-value=1.1e-19 Score=158.21 Aligned_cols=164 Identities=23% Similarity=0.241 Sum_probs=130.6
Q ss_pred ChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 54 NPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 54 ~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
.+...++++.+++++|.+.++++++|++|+. ++..+ +++||+|+++.++|.++... +...|.+++.++.+
T Consensus 17 ~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~ 92 (352)
T cd00616 17 GPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANA----ILLLGATPVFVDIDPDTY 92 (352)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCeEEEEecCCCcC
Confidence 3679999999999999988999999999986 56666 58999999999999888644 35578888888753
Q ss_pred --CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC--CCCCccEEEeccc--cc
Q 024619 128 --DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KF 201 (265)
Q Consensus 128 --d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~--~~~~~di~~~s~s--K~ 201 (265)
|++++++.+.+++++|++++ ++|.+.|+++|.++|+++|+++|+|++|+.|..... .....|+.+.|++ |+
T Consensus 93 ~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~ 169 (352)
T cd00616 93 NIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKN 169 (352)
T ss_pred CcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCC
Confidence 68999999988899998764 689999999999999999999999999998765422 2222588888876 99
Q ss_pred cccCCCceeeEEEeechhHHHHHHHH
Q 024619 202 IAGHSDVMAGVLAVKGERLAKELYFL 227 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~~~~~~ 227 (265)
++++. +|+++.+++.+.+.....
T Consensus 170 ~~~~~---gg~~~~~~~~~~~~~~~~ 192 (352)
T cd00616 170 LTTGE---GGAVVTNDEELAERARLL 192 (352)
T ss_pred CcccC---ceEEEECCHHHHHHHHHH
Confidence 95433 688888765555544443
No 201
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.85 E-value=1.6e-20 Score=165.19 Aligned_cols=160 Identities=24% Similarity=0.241 Sum_probs=130.5
Q ss_pred hHHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHhc---CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619 56 TRDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~~---~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 127 (265)
..+++++.+++++|++ + ++++++|++++. ++..+. .+|+.|+++..+|+++...+..+ +..|++++.++.+
T Consensus 43 ~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~ 121 (379)
T TIGR03402 43 AVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHL-EKQGYKVTYLPVDEE 121 (379)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHH-HHcCCEEEEEccCCC
Confidence 4778889999999976 3 445555668875 455443 45789999999998887776444 4578999988753
Q ss_pred ---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccc
Q 024619 128 ---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA 203 (265)
Q Consensus 128 ---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~ 203 (265)
|++++++.+.++++++++++++|+||.+.|+++|.++|+++|+++++|++|+.|... +....+.|+++.|.+|+ .
T Consensus 122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~-~ 200 (379)
T TIGR03402 122 GRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL-H 200 (379)
T ss_pred CcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc-C
Confidence 789999999989999999999999999999999999999999999999999988765 34456899999999995 5
Q ss_pred cCCCceeeEEEeechh
Q 024619 204 GHSDVMAGVLAVKGER 219 (265)
Q Consensus 204 g~~g~~~G~v~~~~~~ 219 (265)
||+| .|+++.++..
T Consensus 201 gp~G--~g~l~v~~~~ 214 (379)
T TIGR03402 201 GPKG--VGALYIRKGT 214 (379)
T ss_pred CCCc--eEEEEECCCC
Confidence 8988 4888777643
No 202
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.85 E-value=8.5e-20 Score=161.54 Aligned_cols=166 Identities=25% Similarity=0.273 Sum_probs=131.9
Q ss_pred CCh-hHHHHHHHHHhHhCCC--ceEEecchH-HHHHH-HHHhcCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619 53 GNP-TRDALESLLAKLDKAD--RALCFTSGM-AALAA-VTHLLGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125 (265)
Q Consensus 53 g~~-~~~~l~~~l~~~~g~~--~~i~~~~g~-~al~~-~~~~~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (265)
|.+ .++++++++++++|.+ +++++++|+ ++..+ ......+ ||+|+++++.|+++...+....+..|.+++.++
T Consensus 61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~ 140 (398)
T cd00613 61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVP 140 (398)
T ss_pred hHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEec
Confidence 665 5999999999999987 566666666 45443 3444665 999999999999998777655556678888887
Q ss_pred CC-----CHHHHHhhcCCCceEEEEecCCCCccccccH-HHHHHHHHHcCCEEEEeCCcCCCCC-cCCCCCCccEEEecc
Q 024619 126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDI-RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSA 198 (265)
Q Consensus 126 ~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l-~~i~~~a~~~~~~li~D~~~~~~~~-~~~~~~~~di~~~s~ 198 (265)
.+ |++++++++.+++++|++++++ ++|.+.|+ ++|.++|+++|+++|+|++|+.+.. ..+...++|++++|+
T Consensus 141 ~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~ 219 (398)
T cd00613 141 SDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNL 219 (398)
T ss_pred cCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeec
Confidence 54 6899999998899999999985 89999885 9999999999999999999875543 334566899999999
Q ss_pred ccccccC---CCceeeEEEeechhH
Q 024619 199 TKFIAGH---SDVMAGVLAVKGERL 220 (265)
Q Consensus 199 sK~~~g~---~g~~~G~v~~~~~~~ 220 (265)
|||+ +| +|.++|+++.+++.+
T Consensus 220 ~K~~-~p~g~Ggp~~g~l~~~~~~~ 243 (398)
T cd00613 220 QKTG-VPHGGGGPGAGFFAVKKELV 243 (398)
T ss_pred cccC-CCCCCCCCceeEEEEhhhhH
Confidence 9998 54 245579998876543
No 203
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.85 E-value=5e-20 Score=163.25 Aligned_cols=160 Identities=23% Similarity=0.247 Sum_probs=130.3
Q ss_pred hHHHHHHHHHhHhCCC-ceEEec-chHHHHH-HHHHh----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD-RALCFT-SGMAALA-AVTHL----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~~i~~~-~g~~al~-~~~~~----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..+++++.+++++|.+ +.++++ ++++++. ++..+ .++||+|+++.++|+++...+.. ++..|++++.++.+
T Consensus 48 ~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~-~~~~g~~v~~v~~~~ 126 (402)
T TIGR02006 48 AVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRY-LEREGFEVTYLPPKS 126 (402)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHH-HHhcCCEEEEEccCC
Confidence 4778899999999976 344444 5558875 44443 36899999999999988776643 35578999988753
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|++++++++.+++++|++++++||||.+.|+++|.++|+++|+++++|++++.|..+ +..+.+.|++++|++|++
T Consensus 127 ~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~ 206 (402)
T TIGR02006 127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY 206 (402)
T ss_pred CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc
Confidence 799999999888999999999999999999999999999999999999999988775 344568999999999976
Q ss_pred ccCCCceeeEEEeechh
Q 024619 203 AGHSDVMAGVLAVKGER 219 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~ 219 (265)
||+| .|+++.+++.
T Consensus 207 -gp~G--~G~l~~~~~~ 220 (402)
T TIGR02006 207 -GPKG--IGALYVRRKP 220 (402)
T ss_pred -CCCc--eEEEEEccCC
Confidence 7878 4777777543
No 204
>PRK07908 hypothetical protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=163.26 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=115.8
Q ss_pred CccCCC-CChhHHHHHHHHHhHhCCC-ceEEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619 47 YDYTRS-GNPTRDALESLLAKLDKAD-RALCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123 (265)
Q Consensus 47 ~~y~~~-g~~~~~~l~~~l~~~~g~~-~~i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (265)
..|++. |. .++++.+++++|.+ +.|++++|+ +++.++.. +++| .+++..|+|..+. ..++..|++++.
T Consensus 52 ~~Y~~~~g~---~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~ 122 (349)
T PRK07908 52 AAYPSTEDE---RRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-LRPR-RAAVVHPSFTEPE----AALRAAGIPVHR 122 (349)
T ss_pred hcCCCccch---HHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-cCCC-eEEEeCCCChHHH----HHHHHcCCEEEe
Confidence 356654 44 34555555566655 567777765 88875545 6775 5677889998775 455778999998
Q ss_pred ecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---CC--CCCCccE
Q 024619 124 VNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---RP--LELGADI 193 (265)
Q Consensus 124 ~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~~--~~~~~di 193 (265)
++.+ |++ .+.++++++++++|+||||.+.+.++|.++|++ +.++|+||+|+..... .. ...+..+
T Consensus 123 v~~~~~~~~d~~----~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i 197 (349)
T PRK07908 123 VVLDPPFRLDPA----AVPDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVL 197 (349)
T ss_pred eccCcccCcChh----HhccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEE
Confidence 8865 333 235678999999999999999999999999975 7889999998642111 11 1234568
Q ss_pred EEeccccccccCCCceeeEEEeechhHH
Q 024619 194 VMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
++.|+||.+ +.+|+|+||++.+++.+.
T Consensus 198 ~i~S~SK~~-~l~GlRiG~~~~~~~~~~ 224 (349)
T PRK07908 198 VLRSLTKTW-SLAGLRVGYALGAPDVLA 224 (349)
T ss_pred EEeeccccc-CCccceeeeeecCHHHHH
Confidence 899999999 778999999998765443
No 205
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.84 E-value=2.5e-20 Score=164.10 Aligned_cols=162 Identities=22% Similarity=0.189 Sum_probs=125.0
Q ss_pred CChhHHHHHHHHHhHhCC--CceEEecch-HHHHH-HHHHh-----cCC-CCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619 53 GNPTRDALESLLAKLDKA--DRALCFTSG-MAALA-AVTHL-----LGT-GEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122 (265)
Q Consensus 53 g~~~~~~l~~~l~~~~g~--~~~i~~~~g-~~al~-~~~~~-----~~~-g~~viv~~~~~~~~~~~~~~~~~~~g~~~~ 122 (265)
+.+..++..+.+.+.+|+ .+.+++++| ++++. ++..+ +++ +++|+++...|+++...+. .++..|++++
T Consensus 40 ~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~~G~~v~ 118 (382)
T TIGR03403 40 THPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCA-FLESLGVEVT 118 (382)
T ss_pred HHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHH-HHHHCCCEEE
Confidence 333444444455555664 245555555 58886 44443 255 4789999999998887763 4567899999
Q ss_pred eecCC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEe
Q 024619 123 RVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMH 196 (265)
Q Consensus 123 ~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~ 196 (265)
.++.+ |++++++++.++++++++++++||||.+.|+++|.++|+++|+++++|++++.|... +....+.|+++.
T Consensus 119 ~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~ 198 (382)
T TIGR03403 119 YLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSF 198 (382)
T ss_pred EEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEE
Confidence 98864 789999999888999999999999999999999999999999999999999988664 344568999999
Q ss_pred ccccccccCCCceeeEEEeech
Q 024619 197 SATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
|++||+ ||+|+ |+++.++.
T Consensus 199 s~~K~~-gp~G~--g~l~vr~~ 217 (382)
T TIGR03403 199 SAHKFH-GPKGV--GGLYIRKG 217 (382)
T ss_pred cchhhC-CCCce--EEEEECCC
Confidence 999986 78885 77766654
No 206
>PLN02721 threonine aldolase
Probab=99.84 E-value=5.5e-20 Score=160.12 Aligned_cols=170 Identities=25% Similarity=0.255 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHhcC-CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-----C
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-----C 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~ 127 (265)
|...++++.+++++|.+..+++++|++++ .++..+++ +||+|++++|+|.+..... ..+...|.+++.++. .
T Consensus 40 ~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~ 118 (353)
T PLN02721 40 PTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNEDGTM 118 (353)
T ss_pred HHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcCCCc
Confidence 55789999999999998888999998665 45666676 9999999999986554210 145677899988874 3
Q ss_pred CHHHHHhhcC-------CCceEEEEec-CCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCC---c-CC--CCCC
Q 024619 128 DLDEVASAIG-------PWTKLVWVES-PTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVL---S-RP--LELG 190 (265)
Q Consensus 128 d~~~l~~~~~-------~~~~~i~~~~-~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~---~-~~--~~~~ 190 (265)
|++++++.+. +++++|++++ ++||+|.+.| +++|.++|+++|+++++|++|..+.. . .+ ...+
T Consensus 119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~ 198 (353)
T PLN02721 119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKA 198 (353)
T ss_pred CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhh
Confidence 7899999887 5889999977 4678998866 78999999999999999999865431 1 11 1236
Q ss_pred ccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 229 (265)
Q Consensus 191 ~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~ 229 (265)
.|.++.|+||+++++. +++++.+++ +.+.......
T Consensus 199 ~d~~~~s~sK~l~~~~---G~~~~~~~~-~~~~~~~~~~ 233 (353)
T PLN02721 199 ADSVSVCLSKGLGAPV---GSVIVGSKS-FIRKAKRLRK 233 (353)
T ss_pred CCEEEEecccccCCce---eeEEecCHH-HHHhHHHHHH
Confidence 7888999999996542 344555554 4343334443
No 207
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.84 E-value=4.9e-20 Score=161.19 Aligned_cols=162 Identities=20% Similarity=0.234 Sum_probs=128.3
Q ss_pred hHHHHHHHHHhHhCCCc---eE-EecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 56 TRDALESLLAKLDKADR---AL-CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~---~i-~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
..+++++.+++++|++. .+ ++++|++++. ++.+++.+||.+++..+.+.+.. +...++..|.+++.++.+
T Consensus 36 ~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~ 113 (363)
T TIGR02326 36 VVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVE 113 (363)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCC
Confidence 47889999999999862 34 5556679986 66778888888776555443331 235567788888888754
Q ss_pred --CHHHHHhhcCC--CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 --DLDEVASAIGP--WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 --d~~~l~~~~~~--~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|++++++++.+ +++++.+++++||||.+.|+++|+++|+++|+++++|++++.|..+ +....+.|++++|++||+
T Consensus 114 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l 193 (363)
T TIGR02326 114 PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCI 193 (363)
T ss_pred CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCcccc
Confidence 78999998863 4678889999999999999999999999999999999999988764 334568999999999999
Q ss_pred ccCCCceeeEEEeechhHH
Q 024619 203 AGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~ 221 (265)
+||+|+ |+++++++.+.
T Consensus 194 ~~p~G~--G~l~~~~~~~~ 210 (363)
T TIGR02326 194 QGVPGF--GFVIARQAELA 210 (363)
T ss_pred ccCCcc--eEEEECHHHHH
Confidence 899884 99988876553
No 208
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.84 E-value=1.7e-19 Score=160.68 Aligned_cols=199 Identities=20% Similarity=0.174 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh---------cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL---------LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~---------~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (265)
+..+++++.+++++|.+.+++++||++|+. ++..+ +++||+|+++.++|+.+...+ ...|.+++.+
T Consensus 63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v----~~~G~~pv~v 138 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI----IQNGLVPVFV 138 (438)
T ss_pred hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence 568899999999999998999999998875 44443 588999999999999887443 4578888888
Q ss_pred cCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC--CCCCccEEEe
Q 024619 125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMH 196 (265)
Q Consensus 125 ~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~--~~~~~di~~~ 196 (265)
+++ |++++++++.+++++|+++++ .|...++++|.++|+++|++||+|++|+.|..... ...-.|+.++
T Consensus 139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~f 215 (438)
T PRK15407 139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATL 215 (438)
T ss_pred ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEE
Confidence 753 789999999889999998864 67778999999999999999999999998876432 2222388888
Q ss_pred ccc--cccccCCCceeeEEEeechhHHHHHHHHHHhc---------------------------------------cCCC
Q 024619 197 SAT--KFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------------------------------------GSGL 235 (265)
Q Consensus 197 s~s--K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~---------------------------------------~~~~ 235 (265)
||+ |.+.... +|+++.+++.+.+........+ ...+
T Consensus 216 Sf~~~k~~~~ge---GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rm 292 (438)
T PRK15407 216 SFYPAHHITMGE---GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKI 292 (438)
T ss_pred eCCCCCCccccC---ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCc
Confidence 875 5554333 6999999988877555443311 1235
Q ss_pred ChhHHHHHHhccCchHhhHHHHhhchhc
Q 024619 236 APFDCWICLRGVKTMALRVEKQQVCFFD 263 (265)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (265)
+...+++.+.+|+++....++.++++..
T Consensus 293 sel~AAig~~qL~~l~~~~~~R~~~a~~ 320 (438)
T PRK15407 293 TDMQAAIGLAQLEKLPGFIEARKANFAY 320 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999988777777776654
No 209
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.84 E-value=9.6e-20 Score=162.98 Aligned_cols=173 Identities=20% Similarity=0.198 Sum_probs=132.3
Q ss_pred CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619 45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123 (265)
Q Consensus 45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (265)
+...|+.. +...++++.++++++.+.++++++|++|+. ++..+++||| |++++|.|..+. ...+..|.+++.
T Consensus 70 g~~~Y~~~--~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~----~~i~~~G~~~v~ 142 (460)
T PRK13238 70 GDEAYAGS--RSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTR----AHIELNGATAVD 142 (460)
T ss_pred CCcccCCC--CCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchH----HHHHHcCCEEEE
Confidence 44567666 446667778888889888888888889986 6778899999 999999999886 444678889888
Q ss_pred ecC---------------CCHHHHHhhcC----CCceEEEEecCCCCcc-cccc---HHHHHHHHHHcCCEEEEeCCcCC
Q 024619 124 VNT---------------CDLDEVASAIG----PWTKLVWVESPTNPRQ-QICD---IRKIAEMAHAHGALLLVDNSIMS 180 (265)
Q Consensus 124 ~~~---------------~d~~~l~~~~~----~~~~~i~~~~~~np~G-~~~~---l~~i~~~a~~~~~~li~D~~~~~ 180 (265)
++. .|++++++.+. +++++|++++|+||+| .+.+ +++|.++|++||++||+|+++..
T Consensus 143 v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~ 222 (460)
T PRK13238 143 LVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFA 222 (460)
T ss_pred EeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence 865 47899999987 3699999999999998 6654 68999999999999999998743
Q ss_pred C-C----------CcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619 181 P-V----------LSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL 227 (265)
Q Consensus 181 ~-~----------~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~ 227 (265)
. . ..... ....|+++.|.+|...+|. +|+++.++..+.+..+..
T Consensus 223 e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~---GG~i~~~d~~l~~~~~~~ 284 (460)
T PRK13238 223 ENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI---GGLLCFRDEDLFTECRTL 284 (460)
T ss_pred hhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc---eeEEEcChHHHHHHhhhc
Confidence 1 1 11110 1237899999999876654 589988865555544333
No 210
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.84 E-value=1.5e-19 Score=140.60 Aligned_cols=154 Identities=28% Similarity=0.338 Sum_probs=125.5
Q ss_pred HHHHHHHHHhHh--CCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCC-----
Q 024619 57 RDALESLLAKLD--KADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCD----- 128 (265)
Q Consensus 57 ~~~l~~~l~~~~--g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d----- 128 (265)
.+++++.+++++ +.+..+++++|++|+. ++..+.+++++|++.++.|++... ..++..|.+++.++.++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~ 78 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG 78 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence 467899999999 7778888888889986 667777889999999999988862 34577888998887541
Q ss_pred --HHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----CCCCCccEEEeccccc
Q 024619 129 --LDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKF 201 (265)
Q Consensus 129 --~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----~~~~~~di~~~s~sK~ 201 (265)
.+++++.. .++++++++++++|++|...|+++|.++|+++|+++++|++|+.+.... ....+.|+++.|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~ 158 (170)
T cd01494 79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN 158 (170)
T ss_pred hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence 12444433 4678999999999999999999999999999999999999998777653 5556799999999999
Q ss_pred cccCCCceeeEEEee
Q 024619 202 IAGHSDVMAGVLAVK 216 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~ 216 (265)
+++ ++ +|+++++
T Consensus 159 ~~~-~~--~G~l~~~ 170 (170)
T cd01494 159 LGG-EG--GGVVIVK 170 (170)
T ss_pred cCC-Cc--eEEEEeC
Confidence 976 43 6888764
No 211
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.84 E-value=2.4e-19 Score=159.14 Aligned_cols=200 Identities=22% Similarity=0.185 Sum_probs=138.8
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHH----HHHhHhCCCceEE-ecchHHHHH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALES----LLAKLDKADRALC-FTSGMAALA 84 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~----~l~~~~g~~~~i~-~~~g~~al~ 84 (265)
+.+++-.++||+ +|.+..+...........++.+++. |++..+++++ .+++++|.+.+++ ++||+.|+.
T Consensus 29 ~~~~l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~ 104 (416)
T PRK13034 29 DHLELIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANG 104 (416)
T ss_pred cCeeecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHH
Confidence 345554488887 3444333211111112234556666 7788999998 9999999998865 589998875
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC--CCeEE--EeecC------CCHHHHHhhcC-CCceEEEEecCCCCc
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK--TGVVV--KRVNT------CDLDEVASAIG-PWTKLVWVESPTNPR 152 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~--~g~~~--~~~~~------~d~~~l~~~~~-~~~~~i~~~~~~np~ 152 (265)
++.+++++||+|+++...|.+... .-++. .+... ..+++ .|++++++.+. .++++|+++.+. .
T Consensus 105 ~~l~al~~~GD~Vl~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~ 179 (416)
T PRK13034 105 AVYLALLKPGDTILGMSLSHGGHLT---HGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--Y 179 (416)
T ss_pred HHHHHhcCCCCEEEEcCccceeeee---cCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--c
Confidence 788889999999999998876321 11111 11111 23333 58888888774 467888876543 4
Q ss_pred cccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCC----CCccEEEeccccccccCCCceeeEEEeechhHHHH
Q 024619 153 QQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 223 (265)
Q Consensus 153 G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~----~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~ 223 (265)
|...|+++|.++|+++|+++++|++|+.|....... .+.|++++|++|+++||. +|+++++++.+...
T Consensus 180 g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~ 251 (416)
T PRK13034 180 PRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKK 251 (416)
T ss_pred ccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHH
Confidence 778899999999999999999999999887642221 248999999999997776 48887777665443
No 212
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.83 E-value=1.9e-19 Score=157.70 Aligned_cols=161 Identities=21% Similarity=0.283 Sum_probs=130.5
Q ss_pred hHHHHHHHHHhHhCCC---c-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 56 TRDALESLLAKLDKAD---R-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
..+++++.+++++|.+ + ++++++|++++. ++..+..+||.|++..+.|.+.. +...++..|++++.++.+
T Consensus 38 ~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~ 115 (368)
T PRK13479 38 LTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDE 115 (368)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCC
Confidence 5899999999999885 3 335567788886 77888889999998877765542 235567788888888753
Q ss_pred --CHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 --DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 --d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|++++++++. +++++|++++++||||.+.|+++|.++|+++|+++++|++++.+... +....+.|++++|++||+
T Consensus 116 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l 195 (368)
T PRK13479 116 PPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCI 195 (368)
T ss_pred CCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCcccc
Confidence 6899998875 35678999999999999999999999999999999999998877654 233457899999999999
Q ss_pred ccCCCceeeEEEeechhH
Q 024619 203 AGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~ 220 (265)
.||+|+ |+++.+++.+
T Consensus 196 ~g~~G~--G~l~~~~~~~ 211 (368)
T PRK13479 196 EGVPGF--GFVIARRSEL 211 (368)
T ss_pred ccCCCc--eEEEECHHHH
Confidence 899885 9998887654
No 213
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.83 E-value=8e-20 Score=155.82 Aligned_cols=161 Identities=27% Similarity=0.308 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHhHhCCC-ceEEecch-HHHHH-HHHH--h-c---CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619 55 PTRDALESLLAKLDKAD-RALCFTSG-MAALA-AVTH--L-L---GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~--~-~---~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (265)
...++.++.+++++|++ +.|++||| +++.+ ++.. . . +.|.+|+++.-.|++..+.++.+ +..|.++.+++
T Consensus 44 ~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~Vtyl~ 122 (386)
T COG1104 44 KAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEVTYLP 122 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeEEEeC
Confidence 45889999999999987 45666655 68875 5554 2 1 25789999999999999888666 78899999998
Q ss_pred CC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccc
Q 024619 126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSAT 199 (265)
Q Consensus 126 ~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~s 199 (265)
++ |+++++++++++|.+|.+-+.||.+|.+.|+++|.++|+++++++++|.+++.|-++. ....+.|++..|.|
T Consensus 123 V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaH 202 (386)
T COG1104 123 VDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAH 202 (386)
T ss_pred CCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehh
Confidence 76 8999999999999999999999999999999999999999999999999999998874 44558999999999
Q ss_pred cccccCCCceeeEEEeechh
Q 024619 200 KFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~ 219 (265)
|+. ||.|+ |+++.++..
T Consensus 203 K~~-GpkGi--GaLyv~~~~ 219 (386)
T COG1104 203 KFG-GPKGI--GALYVRPGV 219 (386)
T ss_pred hcc-CCCce--EEEEECCCC
Confidence 977 89994 888776543
No 214
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.83 E-value=5.7e-19 Score=157.20 Aligned_cols=160 Identities=26% Similarity=0.247 Sum_probs=119.2
Q ss_pred HHHHHhHhCCCce-EEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHH-hhcCCCCeEEEeecC------CCHHH
Q 024619 61 ESLLAKLDKADRA-LCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVNT------CDLDE 131 (265)
Q Consensus 61 ~~~l~~~~g~~~~-i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~-~~~~~~g~~~~~~~~------~d~~~ 131 (265)
++.+++++|.+.. +++++|++++. ++..++++||+|+++.|+|+++...+. ......|.+++.++. .|+++
T Consensus 77 ~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 156 (416)
T PRK00011 77 IDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDE 156 (416)
T ss_pred HHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHH
Confidence 4488999998854 66678998885 677789999999999999986532211 112345677777764 37899
Q ss_pred HHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEEEeccccccccC
Q 024619 132 VASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGH 205 (265)
Q Consensus 132 l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~s~sK~~~g~ 205 (265)
+++.+.+ ++++|+++++. +|...|+++|.++|+++|+++|+|++|+.|.. ..... +.|++++|+||++.|+
T Consensus 157 l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g~ 233 (416)
T PRK00011 157 VEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRGP 233 (416)
T ss_pred HHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCCC
Confidence 9998864 78998887554 45678999999999999999999999976654 22334 6799999999998655
Q ss_pred CCceeeEEEeechhHHHHHHH
Q 024619 206 SDVMAGVLAVKGERLAKELYF 226 (265)
Q Consensus 206 ~g~~~G~v~~~~~~~~~~~~~ 226 (265)
. +|+++.+++.+.+.+..
T Consensus 234 ~---gg~i~~~~~~~~~~l~~ 251 (416)
T PRK00011 234 R---GGLILTNDEELAKKINS 251 (416)
T ss_pred C---ceEEEeCCHHHHHHHHH
Confidence 4 68888875555554433
No 215
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.82 E-value=8.4e-19 Score=155.41 Aligned_cols=159 Identities=26% Similarity=0.297 Sum_probs=118.9
Q ss_pred HHHHHHhHhCCCc-eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHH-hhcCCCCeEEEeec--CC------C
Q 024619 60 LESLLAKLDKADR-ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-RVTPKTGVVVKRVN--TC------D 128 (265)
Q Consensus 60 l~~~l~~~~g~~~-~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~-~~~~~~g~~~~~~~--~~------d 128 (265)
.++.+++++|.+. .+++++|++|+. ++..++++||+|++++|.|+++...+. ..++..|.++..++ .+ |
T Consensus 70 ~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id 149 (402)
T cd00378 70 AIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLID 149 (402)
T ss_pred HHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcC
Confidence 5667889999875 456678888885 778889999999999999987753221 11456676655443 22 8
Q ss_pred HHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCCCCCccEEEecccccc
Q 024619 129 LDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFI 202 (265)
Q Consensus 129 ~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~~~~~di~~~s~sK~~ 202 (265)
++++++.+. +++++|++++++|| ...|+++|+++|+++|+++++|++|..+.. ..+.. +.|++++|+||++
T Consensus 150 ~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l 226 (402)
T cd00378 150 YDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTL 226 (402)
T ss_pred HHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCC
Confidence 999999885 68999999888764 567999999999999999999999865543 22233 6799999999998
Q ss_pred ccCCCceeeEEEeechhHHHHH
Q 024619 203 AGHSDVMAGVLAVKGERLAKEL 224 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~~~ 224 (265)
.|+ ++|+++.+++.+.+.+
T Consensus 227 ~G~---~gg~i~~~~~~~~~~l 245 (402)
T cd00378 227 RGP---RGGLILTRKGELAKKI 245 (402)
T ss_pred CCC---CceEEEeccHHHHHHH
Confidence 555 4688888774444433
No 216
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.82 E-value=4.3e-19 Score=154.48 Aligned_cols=164 Identities=22% Similarity=0.276 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHhHhCCCc----eEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619 55 PTRDALESLLAKLDKADR----ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~----~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 127 (265)
...+++++.+++++|.+. ++++++|++++. ++..++.+||++++..+.+.+.. +...++..|.+++.++.+
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~ 108 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY 108 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence 458999999999999862 335677788886 67777888888775555443321 135556788888887753
Q ss_pred ---CHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccc
Q 024619 128 ---DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF 201 (265)
Q Consensus 128 ---d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~ 201 (265)
|++++++.+. ++++.+++++++|++|.+.|+++|+++|+++|+++++|++++.+..+ +....+.|++++|++|+
T Consensus 109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~ 188 (355)
T TIGR03301 109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC 188 (355)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence 7899999886 35667888999999999999999999999999999999999887654 23355799999999999
Q ss_pred cccCCCceeeEEEeechhHHH
Q 024619 202 IAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~ 222 (265)
++|++|+ |+++++++.+..
T Consensus 189 l~~~~G~--g~~~~~~~~~~~ 207 (355)
T TIGR03301 189 LEGVPGF--GFVIARRDLLEA 207 (355)
T ss_pred cccCCce--eEEEECHHHHHH
Confidence 9888884 899888865533
No 217
>PRK07505 hypothetical protein; Provisional
Probab=99.82 E-value=7.2e-19 Score=155.85 Aligned_cols=210 Identities=18% Similarity=0.180 Sum_probs=140.5
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCC--CCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTR--SGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~--~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+..+++|+ +++|+|...+|.+..+...............++ ...+..+++++.++++++. +.+++++|++|.. +
T Consensus 44 ~g~~~ld~~-s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~a 121 (402)
T PRK07505 44 DGHTFVNFV-SCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGI 121 (402)
T ss_pred CCceEEEee-cCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHH
Confidence 356799999 789999666665555432222111101111121 1345689999999999988 7888999987775 3
Q ss_pred HHHh----cCCCC-EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619 86 VTHL----LGTGE-EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 86 ~~~~----~~~g~-~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
+..+ ..+|+ .|++.+..|++.........+ .+.+++.++..|++++++++.++++++++++|+||+|.+.++++
T Consensus 122 i~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~ 200 (402)
T PRK07505 122 LPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIAPVKE 200 (402)
T ss_pred HHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcCCHHH
Confidence 3222 12232 355666555544322122222 35688889999999999998777889999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCcCCCCCc--------CCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619 161 IAEMAHAHGALLLVDNSIMSPVLS--------RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 225 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~~~~~~~~--------~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~ 225 (265)
|.++|+++|+++|+||+|+.+.++ ... ..+.++++.|++|.++++ +|+++..+..+.+.+.
T Consensus 201 i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~ 272 (402)
T PRK07505 201 LLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS----GGVIMLGDAEQIELIL 272 (402)
T ss_pred HHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc----CeEEEeCCHHHHHHHH
Confidence 999999999999999998643221 111 123468889999999543 3777655545545443
No 218
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.8e-20 Score=149.79 Aligned_cols=200 Identities=21% Similarity=0.240 Sum_probs=154.8
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CCh-hHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAALA-AV 86 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~ 86 (265)
-.+++|+ .|||+|++.+|.+......... ....+..-.+. |.. ..+.++..++++.+.++.+++.++..|.. ++
T Consensus 67 k~ilnFc-aNnYLGLsshPeii~a~~~ale-eyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~f 144 (417)
T KOG1359|consen 67 KKILNFC-ANNYLGLSSHPEIINAGQKALE-EYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAF 144 (417)
T ss_pred cceeeec-ccccccccCChHHHHHHHHHHH-HhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHH
Confidence 4689999 9999999999988876533322 11222333333 664 59999999999999999999999997775 77
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHH-HHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 87 THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDE-VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 87 ~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~-l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
-+++.|.|.|.-++..|.+..... .++++. ..+++-|++. +.++.+.+.++|...+..++.|.+.|+++|++++
T Consensus 145 eail~pedAvfSDeLNhASIIdGi-rLckry----~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La 219 (417)
T KOG1359|consen 145 EAILTPEDAVFSDELNHASIIDGI-RLCKRY----RHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLA 219 (417)
T ss_pred HHhcChhhhhhccccccchhhhhh-HHHhhh----ccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHH
Confidence 788999999999988888887665 445533 3444444443 4445556788999999999999999999999999
Q ss_pred HHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 166 HAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 166 ~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
++||.++++||+|+.|.++.. ..-++|++..+++|.++|.. +|+..++++.+
T Consensus 220 ~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~li 280 (417)
T KOG1359|consen 220 KKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKPLI 280 (417)
T ss_pred HhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChhHH
Confidence 999999999999998887521 12358999999999997655 69998887654
No 219
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.81 E-value=2e-18 Score=153.01 Aligned_cols=233 Identities=18% Similarity=0.148 Sum_probs=151.8
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+.++++|.++ +..+|...|.+.++..-.... ..+.......+...++++.++++.+.+.+++++||++|+. +
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~a 114 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGR----LTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETA 114 (401)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh----ccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHH
Confidence 34678887632 122566666666555432222 1111111134678899999999999888999999999986 4
Q ss_pred HHHhcC---------CC-CEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619 86 VTHLLG---------TG-EEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE 146 (265)
Q Consensus 86 ~~~~~~---------~g-~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 146 (265)
+..+.. +| ++|++....|++........ .......+..++..|++++++.+.+++++|+++
T Consensus 115 l~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e 194 (401)
T PRK00854 115 IKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVE 194 (401)
T ss_pred HHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEc
Confidence 444321 23 67888777777754322111 011123456677789999999998899999999
Q ss_pred cCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEee
Q 024619 147 SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 147 ~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
+++||+|.+.+ +++|.++|++||+++|+||+|. .+..+. ......|+++. +|++++ +.+++|+++.+
T Consensus 195 ~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~g-g~~~ig~v~~~ 271 (401)
T PRK00854 195 PIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSG-GFYPVSAVLSN 271 (401)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccC-CccCeEEEEEc
Confidence 99999999976 9999999999999999999997 333221 12234687765 699954 44678999887
Q ss_pred chhHHHHHHHHHHhccCCCChhHHHHHHhccCc
Q 024619 217 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
++.+.. +...........++..++..+..|+.
T Consensus 272 ~~~~~~-l~~~~~~~t~~~~~~~~aa~~a~L~~ 303 (401)
T PRK00854 272 SEVLGV-LKPGQHGSTFGGNPLACAVARAALKV 303 (401)
T ss_pred HHHHhc-ccCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 764432 22222222233466666665555544
No 220
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.81 E-value=1.8e-19 Score=151.35 Aligned_cols=218 Identities=19% Similarity=0.207 Sum_probs=156.2
Q ss_pred eeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CChh-HHHHHHHHHhHhCCCceEEecchHHHH-HHH
Q 024619 11 TLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNPT-RDALESLLAKLDKADRALCFTSGMAAL-AAV 86 (265)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~-~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~ 86 (265)
..+--+. ||||+|++.+|.+..+.. ........+-+-+|. |+.. ..+|++.++++++.+..++++|+.-|. +++
T Consensus 171 k~VtVWC-SNDYLgms~Hp~V~~A~~-~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstL 248 (570)
T KOG1360|consen 171 KKVTVWC-SNDYLGMSRHPEVLDAMH-DTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTL 248 (570)
T ss_pred CceEEEe-cCccccccCChHHHHHHH-HHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHH
Confidence 3455566 899999999998877642 211112233444555 6654 899999999999999999999998666 455
Q ss_pred HHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC----CCceEEEEecCCCCccccccHHH
Q 024619 87 THL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG----PWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 87 ~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
..+ .-||.+|.-++..|.+.+..+ +..+++-..+...|++.+++.+. .-+|+|-++..++++|.++|+++
T Consensus 249 ftLak~lpgcei~SD~gNHASMI~GI----rns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcplee 324 (570)
T KOG1360|consen 249 FTLAKKLPGCEIFSDEGNHASMIQGI----RNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEE 324 (570)
T ss_pred HHHHHHCCCcEEeccccchHHHHHHh----hhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHH
Confidence 554 457887777777776665333 45555555566667777776664 34789999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCcCCCCCcCC---------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH--
Q 024619 161 IAEMAHAHGALLLVDNSIMSPVLSRP---------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-- 229 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~~~~~~~~~~---------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~-- 229 (265)
|++++++||++.++||+|+.|.++.- .-...||+.+++.|.|+. ++|+|...... .++.+-+..
T Consensus 325 lcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat~~L-vDmiRSyAaGF 399 (570)
T KOG1360|consen 325 LCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAATRKL-VDMIRSYAAGF 399 (570)
T ss_pred HHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhhhhH-HHHHHHhcCce
Confidence 99999999999999999998888621 122479999999999943 36999766644 454444433
Q ss_pred hccCCCChhH
Q 024619 230 AEGSGLAPFD 239 (265)
Q Consensus 230 ~~~~~~~~~~ 239 (265)
.....++|..
T Consensus 400 IFTTSLPP~v 409 (570)
T KOG1360|consen 400 IFTTSLPPMV 409 (570)
T ss_pred EEecCCChHH
Confidence 2234455543
No 221
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=99.80 E-value=6.9e-18 Score=142.29 Aligned_cols=180 Identities=18% Similarity=0.273 Sum_probs=140.1
Q ss_pred CccCCC-CChh-HHHHHHHHHhHhC------CCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 47 YDYTRS-GNPT-RDALESLLAKLDK------ADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 47 ~~y~~~-g~~~-~~~l~~~l~~~~g------~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
..|.+. |.+. ++++++.+.+..| ++.++++++++.|.. +...+.+|||.-+++.|-|+++.+ .+.-+.
T Consensus 115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdr---dl~~rT 191 (471)
T KOG0256|consen 115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDR---DLRWRT 191 (471)
T ss_pred hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccc---cceecc
Confidence 456777 8875 8888888887754 335555555568886 667789999999999999999974 444567
Q ss_pred CeEEEeecCC-------CHHHHHhhcC------CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 118 GVVVKRVNTC-------DLDEVASAIG------PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 118 g~~~~~~~~~-------d~~~l~~~~~------~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
|++++++... +++++++++. .+++.|++.+|+||.|.+.+ +..++.+|.++|+-+|+||+|+..
T Consensus 192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 8888888643 5788877764 47899999999999999965 678888899999999999999865
Q ss_pred CCcC------------CC-CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619 182 VLSR------------PL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 230 (265)
Q Consensus 182 ~~~~------------~~-~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~ 230 (265)
.+.. +. ..+..-++.|+||-+ |.||+|.|+++..++.+......++..
T Consensus 272 VF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf 332 (471)
T KOG0256|consen 272 VFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSF 332 (471)
T ss_pred ccCccCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhc
Confidence 5431 11 234557889999999 789999999999998887766555543
No 222
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.6e-19 Score=153.59 Aligned_cols=236 Identities=18% Similarity=0.179 Sum_probs=174.5
Q ss_pred CCCcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CCh-hHHHHHHHHHhHhCCCceEEecchHHH
Q 024619 6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GNP-TRDALESLLAKLDKADRALCFTSGMAA 82 (265)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~-~~~~l~~~l~~~~g~~~~i~~~~g~~a 82 (265)
..+...+++|++ |++|+|.....-..+......-....-...-++. |.. ..+++++..+++.|.++.++++.|...
T Consensus 131 ~tG~~~~~lNlg-SYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~T 209 (519)
T KOG1357|consen 131 YTGTRSRCLNLG-SYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFAT 209 (519)
T ss_pred eccceeeeeeec-ccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccc
Confidence 345667899999 9999998876555554322111011112223333 664 599999999999999999999999877
Q ss_pred HH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-------CCc------eEEEEecC
Q 024619 83 LA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-------PWT------KLVWVESP 148 (265)
Q Consensus 83 l~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-------~~~------~~i~~~~~ 148 (265)
.+ .+.+++.||..|+-++..|.+.. .-++..|+.++...++|.+++++.++ +++ -+|+++..
T Consensus 210 Ns~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi 285 (519)
T KOG1357|consen 210 NSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGI 285 (519)
T ss_pred cccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccc
Confidence 75 67888999999999998888775 66788999999999888877777764 222 26778999
Q ss_pred CCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----------CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619 149 TNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR----------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 149 ~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~----------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
.++-|.+.++.++++++|++.++++.||+|+.|+.+. +...+.||+++++.|++++. +|++.++++
T Consensus 286 ysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~----GGyiagsk~ 361 (519)
T KOG1357|consen 286 YSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA----GGYIAGSKE 361 (519)
T ss_pred eeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc----cceecCcHH
Confidence 9999999999999999999999999999999888742 22346799999999999654 588877776
Q ss_pred hHHHHHHHHH-HhccCCCChhHHHHHHhccCch
Q 024619 219 RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTM 250 (265)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 250 (265)
.+........ ......++++.+...+..++.+
T Consensus 362 lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i 394 (519)
T KOG1357|consen 362 LIDYLRTPSPSALYATSLSPPVAQQILTSVKHI 394 (519)
T ss_pred HHhhhccCCCceeecccCChHHHHHHHHHHHhh
Confidence 5533222222 2344567777777766666543
No 223
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.79 E-value=1.1e-18 Score=154.93 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=118.5
Q ss_pred HHHHHHHHHhHhCCC-c-eEEecchHHHHH-HHHHhcCCC---CEEEEcCCCCCChHHHHHhhcCCCCeEE----EeecC
Q 024619 57 RDALESLLAKLDKAD-R-ALCFTSGMAALA-AVTHLLGTG---EEIVAGDDLYGGTDRLLSRVTPKTGVVV----KRVNT 126 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~-~i~~~~g~~al~-~~~~~~~~g---~~viv~~~~~~~~~~~~~~~~~~~g~~~----~~~~~ 126 (265)
.+++++ + +++|++ + ++++++++++++ ++.++.+++ +.|++++.+|++....|...++..|+++ +.++.
T Consensus 73 ~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (406)
T TIGR01814 73 DESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP 150 (406)
T ss_pred hhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc
Confidence 344444 4 788876 3 444444568886 456666664 3688888999997776655566778776 34443
Q ss_pred C-----CHHHHHhhc---CCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEec
Q 024619 127 C-----DLDEVASAI---GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHS 197 (265)
Q Consensus 127 ~-----d~~~l~~~~---~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s 197 (265)
. +++++++.+ .+++++|++++++|.||.+.|+++|+++|+++|+++++|++|+.|..+. ....++|++++|
T Consensus 151 ~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s 230 (406)
T TIGR01814 151 REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWC 230 (406)
T ss_pred CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEc
Confidence 2 677777766 4789999999999999999999999999999999999999999998763 346789999999
Q ss_pred cccccccCCCceeeEEEeec
Q 024619 198 ATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 198 ~sK~~~g~~g~~~G~v~~~~ 217 (265)
.+||++||+| +|+.+.++
T Consensus 231 ~hK~l~g~pG--~~l~v~~~ 248 (406)
T TIGR01814 231 TYKYLNAGPG--AGAFVHEK 248 (406)
T ss_pred CccccCCCCC--eEEEEehh
Confidence 9999987776 45444443
No 224
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.79 E-value=3.3e-18 Score=150.44 Aligned_cols=203 Identities=19% Similarity=0.175 Sum_probs=135.4
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+.++|+|.++ ++++|..+|.+.++....... .......| ..+...++++++++++|.+.++++++|++++. +
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~~---~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a 100 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEK-LVHVSNLY---YTEPQEELAEKLVEHSGADRVFFCNSGAEANEAA 100 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhh-cccccccc---CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHH
Confidence 35678999843 789998544444443211111 11111112 34679999999999999998888999998875 4
Q ss_pred HHHh---cC----CCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619 86 VTHL---LG----TGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESPT 149 (265)
Q Consensus 86 ~~~~---~~----~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~ 149 (265)
+..+ .. +|++|++.+|+|+.+.......... ...++..++..|++++++.+.+++++|++++++
T Consensus 101 ~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~ 180 (379)
T TIGR00707 101 LKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQ 180 (379)
T ss_pred HHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccc
Confidence 4322 22 3799999999998765332111110 011223344458999999998889999998887
Q ss_pred CCcccc-c---cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 150 NPRQQI-C---DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 150 np~G~~-~---~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
|++|.. . ++++|.++|+++|+++|+||+|.. +..+. ......|++ ++||.+ + +|+|+|+++.+++.
T Consensus 181 ~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~-~-~G~riG~~~~~~~~ 256 (379)
T TIGR00707 181 GEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGL-G-GGVPIGATLAKEEV 256 (379)
T ss_pred cCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEcccc-c-CCcccEEEEEcHHH
Confidence 777764 2 389999999999999999999962 22111 112234554 689999 4 57899999887643
No 225
>PRK10534 L-threonine aldolase; Provisional
Probab=99.79 E-value=3e-18 Score=148.21 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=130.7
Q ss_pred EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcC
Q 024619 13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG 91 (265)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~ 91 (265)
+|.|+ +|...+ ++|.......... .....|+ ..+...++++.+++++|.+..+++++|++++. .+..++.
T Consensus 1 ~~~~~-~~~~~~--p~~~~~~a~~~~~----~~~~~Y~--~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~ 71 (333)
T PRK10534 1 MIDLR-SDTVTR--PSRAMLEAMMAAP----VGDDVYG--DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCE 71 (333)
T ss_pred Ccccc-cccCCC--CCHHHHHHHHhcc----CCCcccC--CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcC
Confidence 36777 665555 4444444321111 1233454 34789999999999999998888889987764 6667789
Q ss_pred CCCEEEEcCCCCCChHHHHHhhcCCC-CeEEEeecCC-----CHHHHHhhcCC------CceEEEEecCCCCccccccH-
Q 024619 92 TGEEIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTC-----DLDEVASAIGP------WTKLVWVESPTNPRQQICDI- 158 (265)
Q Consensus 92 ~g~~viv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~-----d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l- 158 (265)
+||+|+++.|.|...... ...... +++++.++.+ |++++++++.+ ++++|++++|+ +|.+.+.
T Consensus 72 ~gd~vi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~ 147 (333)
T PRK10534 72 RGEEYIVGQAAHNYLYEA--GGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPRE 147 (333)
T ss_pred CCCeeEEechhhhhHhcC--CchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHH
Confidence 999999988877532210 001222 3566666532 69999998865 68999999765 5999765
Q ss_pred --HHHHHHHHHcCCEEEEeCCcCCCCC---cCCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHh
Q 024619 159 --RKIAEMAHAHGALLLVDNSIMSPVL---SRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 230 (265)
Q Consensus 159 --~~i~~~a~~~~~~li~D~~~~~~~~---~~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~ 230 (265)
++|+++|+++++++++||+|..... .... ....|.++.||||.++.+ .+|+++++++ +.+....+...
T Consensus 148 ~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~-~i~~~~~~~~~ 223 (333)
T PRK10534 148 YLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP---VGSLLVGNRD-YIKRARRWRKM 223 (333)
T ss_pred HHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc---ccceEEcCHH-HHHHHHHHHHH
Confidence 5667889999999999999764321 1110 112365566899988543 2446766554 44545444443
Q ss_pred c
Q 024619 231 E 231 (265)
Q Consensus 231 ~ 231 (265)
.
T Consensus 224 ~ 224 (333)
T PRK10534 224 T 224 (333)
T ss_pred h
Confidence 3
No 226
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.79 E-value=3.7e-18 Score=150.72 Aligned_cols=229 Identities=16% Similarity=0.171 Sum_probs=150.0
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA- 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~- 84 (265)
.+.++++|.+ ++.++|...|.+.++..-+.... . ..+.. .++...+++++++++.+.+.+++++||++|+.
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~----~-~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~ 103 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKL----W-HVSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVEC 103 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhc----C-ccccccCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHH
Confidence 4568999974 26789996665555543222211 1 11112 35678899999999887778899999999985
Q ss_pred HHHHh----cCCCC----EEEEcCCCCCChHHHHHhhcCCC----C-----eEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619 85 AVTHL----LGTGE----EIVAGDDLYGGTDRLLSRVTPKT----G-----VVVKRVNTCDLDEVASAIGPWTKLVWVES 147 (265)
Q Consensus 85 ~~~~~----~~~g~----~viv~~~~~~~~~~~~~~~~~~~----g-----~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 147 (265)
++..+ .++|| +|++.++.|+++...+....... + ..+..++..|++++++.+.+++++|++++
T Consensus 104 al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep 183 (389)
T PRK01278 104 AIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEP 183 (389)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEec
Confidence 44433 35565 89999999998865432211110 0 01223455689999999988899999999
Q ss_pred CCCCccccc----cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619 148 PTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 148 ~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
++|++|... .+++|.++|++||+++|+||+|.. +..+. ......|+ .+++|.++ +|++.|++++++
T Consensus 184 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi--~t~sK~l~--~G~~ig~~~~~~ 259 (389)
T PRK01278 184 IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI--MAVAKGIG--GGFPLGACLATE 259 (389)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCE--EEEehhcc--CCcceEEEEEcH
Confidence 999988442 589999999999999999999972 22121 11233565 47899995 468999998877
Q ss_pred hhHHHHHHHHHHhccCCCChhHHHHHHhcc
Q 024619 218 ERLAKELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
+.. +.+...........++..++.++..|
T Consensus 260 ~~~-~~~~~~~~~~t~~~~~~~~aaa~a~l 288 (389)
T PRK01278 260 EAA-KGMTPGTHGSTYGGNPLAMAVGNAVL 288 (389)
T ss_pred HHH-hccCCCCCCCCCCccHHHHHHHHHHH
Confidence 543 32222222233345565555544433
No 227
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.79 E-value=3.2e-19 Score=154.87 Aligned_cols=164 Identities=18% Similarity=0.137 Sum_probs=124.8
Q ss_pred CccCCC-CCh-hHHHHHHHHHhHhCCC----ceEEecchHHHHH-HHHHhcC------------C--CCEEEEcCCCCCC
Q 024619 47 YDYTRS-GNP-TRDALESLLAKLDKAD----RALCFTSGMAALA-AVTHLLG------------T--GEEIVAGDDLYGG 105 (265)
Q Consensus 47 ~~y~~~-g~~-~~~~l~~~l~~~~g~~----~~i~~~~g~~al~-~~~~~~~------------~--g~~viv~~~~~~~ 105 (265)
..|... +.. ..+++.+++++++|.+ ..+++++|++++. ++..+.. + ++.|++++++|.+
T Consensus 28 ~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~ 107 (345)
T cd06450 28 FTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS 107 (345)
T ss_pred cccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH
Confidence 346665 444 4788899999999875 5777777788875 4544431 2 3478888889988
Q ss_pred hHHHHHhhcCCCCeEEEeecC-----CCHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 106 TDRLLSRVTPKTGVVVKRVNT-----CDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 106 ~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
+...+ +..|.+++.++. .|++++++++.+ ++++|++++++||+|.+.|+++|+++|+++|+++++
T Consensus 108 ~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~v 183 (345)
T cd06450 108 VEKAA----AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHV 183 (345)
T ss_pred HHHHH----HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEE
Confidence 76433 445778887764 379999998876 788899999999999999999999999999999999
Q ss_pred eCCcCCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEee
Q 024619 175 DNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 175 D~~~~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
|++|+.+...... ..+.|++..|+||++++|.| +|+++.+
T Consensus 184 D~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g--~g~~~~~ 230 (345)
T cd06450 184 DAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLG--CSAVLVR 230 (345)
T ss_pred echhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcc--hHHHHHH
Confidence 9999877653111 12589999999999877765 5777655
No 228
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.78 E-value=3.2e-18 Score=151.52 Aligned_cols=230 Identities=20% Similarity=0.180 Sum_probs=146.6
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC---ceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD---RALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~---~~i~~~~g~~al 83 (265)
.+.++++|.++ +.++|...|.+.++.. ............| ..+...+++++++++++.+ .++++++|++|+
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~-~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~ 116 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVT-RQLATLGHVSNLF---ATEPQIALAERLVELLGAPEGGRVFFCNSGAEAN 116 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHH-HHHHhccCccCcc---CCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHH
Confidence 35678999742 7789985444443322 2111111111122 3455679999999998753 577778888998
Q ss_pred H-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhc---------CCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619 84 A-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVT---------PKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 152 (265)
Q Consensus 84 ~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~ 152 (265)
. ++..+..+| +.|+..+++|+.+........ ...+.++..++..|++++++.+.+++++|++++++||+
T Consensus 117 ~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~ 196 (398)
T PRK03244 117 EAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEA 196 (398)
T ss_pred HHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCC
Confidence 6 555444455 567777788987753321111 11123455666678999999887789999999999999
Q ss_pred ccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc-----CCCCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619 153 QQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 153 G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
|.+.| +++|.++|++||+++|+||+|.. |..+ .......|++ +++|+++ +|++.|+++.+++ +.+
T Consensus 197 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~--~G~~ig~~~~~~~-~~~ 271 (398)
T PRK03244 197 GVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLG--GGLPIGACLAFGP-AAD 271 (398)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhh--CCcccEEEEEcHH-HHh
Confidence 99976 89999999999999999999852 2111 1123346765 7799995 4688999988876 333
Q ss_pred HHHHHHHhccCCCChhHHHHHHhcc
Q 024619 223 ELYFLQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l 247 (265)
.+...........++..+....+.|
T Consensus 272 ~~~~~~~~~t~~~~~~~~aaa~a~l 296 (398)
T PRK03244 272 LLTPGLHGSTFGGNPVACAAALAVL 296 (398)
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHH
Confidence 3322112223344555555544443
No 229
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.78 E-value=6.4e-18 Score=145.14 Aligned_cols=162 Identities=23% Similarity=0.272 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHhHhCCC--ceEEe-cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 55 PTRDALESLLAKLDKAD--RALCF-TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~~i~~-~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
....++.+.+...++++ +++++ ++|+.++. ++.++++|||+|++......+ ..|.+.++++|.+++.+...
T Consensus 38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG--~R~~~ia~~~g~~v~~~~~~wg~ 115 (383)
T COG0075 38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFG--ERFAEIAERYGAEVVVLEVEWGE 115 (383)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHH--HHHHHHHHHhCCceEEEeCCCCC
Confidence 45888889999999987 44444 56778885 888999999999986665433 34678999999999988754
Q ss_pred --CHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 --DLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 --d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
|+++++++++ ++.++|.+.|...+||.+.|+++|+++|++||.++|+|.+-+.|... ...++++|+++.+..|++
T Consensus 116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l 195 (383)
T COG0075 116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKAL 195 (383)
T ss_pred CCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhc
Confidence 8999999998 46889999999999999999999999999999999999999988775 667889999999999999
Q ss_pred ccCCCceeeEEEeechhH
Q 024619 203 AGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~ 220 (265)
++|||+ |++..+++.+
T Consensus 196 ~~PPGl--a~v~~S~~a~ 211 (383)
T COG0075 196 GAPPGL--AFVAVSERAL 211 (383)
T ss_pred cCCCcc--ceeEECHHHH
Confidence 999996 8888887554
No 230
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.78 E-value=6.6e-18 Score=152.47 Aligned_cols=163 Identities=23% Similarity=0.336 Sum_probs=126.6
Q ss_pred CCh-hHHHHHHHHHhHhCCCceEEe-cchHHH-HHH---HH-HhcCCCC----EEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619 53 GNP-TRDALESLLAKLDKADRALCF-TSGMAA-LAA---VT-HLLGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVV 121 (265)
Q Consensus 53 g~~-~~~~l~~~l~~~~g~~~~i~~-~~g~~a-l~~---~~-~~~~~g~----~viv~~~~~~~~~~~~~~~~~~~g~~~ 121 (265)
|.. .+.++++++++++|.++..+. ++|+.+ +.. +. .+.++|| +|+++++.|+++.. .++..|+++
T Consensus 110 G~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~----~~~~~G~~v 185 (481)
T PRK04366 110 GALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPA----SAAMAGFKV 185 (481)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHH----HHHHcCCEE
Confidence 555 489999999999999864444 556543 322 22 2356666 99999999999974 456689999
Q ss_pred EeecC-----CCHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCC--cCCCCCCccE
Q 024619 122 KRVNT-----CDLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADI 193 (265)
Q Consensus 122 ~~~~~-----~d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~--~~~~~~~~di 193 (265)
+.++. .|++++++++.+++++|++++|+ ++|.+ .|+++|+++|+++|+++++|+++..+.. ..+.+.++|+
T Consensus 186 v~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~ 264 (481)
T PRK04366 186 VEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDV 264 (481)
T ss_pred EEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCE
Confidence 98875 37899999998899999999986 89987 5899999999999999999999975432 2567889999
Q ss_pred EEeccccccccCCCc---eeeEEEeechhH
Q 024619 194 VMHSATKFIAGHSDV---MAGVLAVKGERL 220 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~---~~G~v~~~~~~~ 220 (265)
+++|.+||+++|.|. -.|+++++++..
T Consensus 265 ~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~ 294 (481)
T PRK04366 265 VHLNLHKTFSTPHGGGGPGSGPVGVKEELA 294 (481)
T ss_pred EEEechhhcCCCCCCCCCCeeeeeehhhhH
Confidence 999999999755332 147887776543
No 231
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.78 E-value=9e-18 Score=148.58 Aligned_cols=170 Identities=19% Similarity=0.178 Sum_probs=131.0
Q ss_pred CCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619 46 PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124 (265)
Q Consensus 46 ~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (265)
...|+.. +...++++.+++++|.+.++++++|++|+. +++.+++|||.| +++|.|..+. ......|.+++.+
T Consensus 46 d~~Y~~~--~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~----~~i~~~Ga~pv~v 118 (431)
T cd00617 46 DEAYAGS--KSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTR----GHIEANGAVPVDL 118 (431)
T ss_pred CCccCCC--CCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchH----HHHHhCCCEeEEE
Confidence 3446555 446788888999999999999999999986 777889999987 6889998886 4557788888887
Q ss_pred cC---------------CCHHHHHhhcCCC----ceEEEEecCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 125 NT---------------CDLDEVASAIGPW----TKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 125 ~~---------------~d~~~l~~~~~~~----~~~i~~~~~~np~-G~~~~---l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
++ .|++++++++.++ +++|+++.|+||+ |...+ +++|.++|++||++||+|+++...
T Consensus 119 ~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~ 198 (431)
T cd00617 119 VIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAE 198 (431)
T ss_pred ecccccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHh
Confidence 65 3789999999754 7899999999998 88865 578899999999999999996532
Q ss_pred -----------CCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619 182 -----------VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 225 (265)
Q Consensus 182 -----------~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~ 225 (265)
...... ....|.+..|++|...++. +|+++++++.+.+..+
T Consensus 199 na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~---GG~i~~~d~~l~~~~~ 257 (431)
T cd00617 199 NAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI---GGFLALRDDELYEEAR 257 (431)
T ss_pred hhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc---ceEEEeCcHHHHHHHH
Confidence 111111 1136788888888776553 6899998865655444
No 232
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.77 E-value=4.6e-18 Score=151.13 Aligned_cols=203 Identities=18% Similarity=0.185 Sum_probs=138.9
Q ss_pred cceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCC--CChhHHHHHHHHHhHhC--CCceEEecchHHH
Q 024619 9 VSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRS--GNPTRDALESLLAKLDK--ADRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~a 82 (265)
.+.++|+|.+++++ +|..+|.+.++..-... ....|... ..+...++++.++++++ .+.++++++|++|
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea 108 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLA-----KLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEA 108 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHH-----hCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH
Confidence 35689999855554 77655544444332221 12233332 24679999999999998 6678888889999
Q ss_pred HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCC-----------CHHHHHhhcCC-
Q 024619 83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTC-----------DLDEVASAIGP- 138 (265)
Q Consensus 83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~-----------d~~~l~~~~~~- 138 (265)
+. ++..+ ..+++.|++.++.|++........... ...+++.++.+ |++++++.+.+
T Consensus 109 ~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 188 (413)
T cd00610 109 VEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH 188 (413)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC
Confidence 86 44444 367899999999999876443222211 12345666665 78889888865
Q ss_pred --CceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCC-CCcC-----CCCCCccEEEeccccccccCC
Q 024619 139 --WTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-VLSR-----PLELGADIVMHSATKFIAGHS 206 (265)
Q Consensus 139 --~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~-~~~~-----~~~~~~di~~~s~sK~~~g~~ 206 (265)
++++|++++.++++|.+.+ +++|.++|++||+++|+||+|+.. ..+. ......|+ .|++|++++
T Consensus 189 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~--~t~sK~l~~-- 264 (413)
T cd00610 189 PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI--VTLGKGLGG-- 264 (413)
T ss_pred CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCe--EEEcccccC--
Confidence 5778888888888899876 999999999999999999999732 1211 11223455 478899954
Q ss_pred CceeeEEEeechhH
Q 024619 207 DVMAGVLAVKGERL 220 (265)
Q Consensus 207 g~~~G~v~~~~~~~ 220 (265)
|+++|+++.+++.+
T Consensus 265 g~~~g~~~~~~~~~ 278 (413)
T cd00610 265 GLPLGAVLGREEIM 278 (413)
T ss_pred ccccEEEEEcHHHH
Confidence 58899998765433
No 233
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.76 E-value=2.8e-17 Score=145.39 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=150.1
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH-
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA- 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~- 84 (265)
.+.++++|.++ +..+|...|.+.++..-+... ..+ +++. .++...+++++++++.+.+.+++++||++|+.
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~----~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~ 112 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADK----VTL-TSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVET 112 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhh----ccc-cccccCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHH
Confidence 34678888532 334888887777775433222 111 1222 44668889999999988888999999999986
Q ss_pred HHHHhc---------CCC-CEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcCCCceEEEE
Q 024619 85 AVTHLL---------GTG-EEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWV 145 (265)
Q Consensus 85 ~~~~~~---------~~g-~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~~~~~~i~~ 145 (265)
++.... .+| ++|+..+.+|++............+ ..+..++..|++++++.+.+++++|++
T Consensus 113 Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii 192 (396)
T PRK04073 113 AIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITPNTAAFLV 192 (396)
T ss_pred HHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhcccCeEEEEE
Confidence 433321 134 6788887777766432212111100 113456667899999999888999999
Q ss_pred ecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619 146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 146 ~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
++++||+|.+.+ +++|.++|+++|+++|+||+|. .+..+ .......|++ +++|.+ |.+|+++|++++
T Consensus 193 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~--~~sK~l-g~gg~~ig~~~~ 269 (396)
T PRK04073 193 EPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMY--ILGKAL-GGGVFPISCVAA 269 (396)
T ss_pred cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEE--Eecccc-cCCCCcceEEEE
Confidence 999999999865 8999999999999999999997 22211 1123346766 468999 456788999988
Q ss_pred echhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 216 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+++.+ +.+...........++..++..+..|+
T Consensus 270 ~~~i~-~~~~~~~~~~t~~~~~~~~aaa~aaL~ 301 (396)
T PRK04073 270 NRDIL-GVFTPGSHGSTFGGNPLACAVSIAALE 301 (396)
T ss_pred cHHHH-hhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 76543 333222222233445555555444444
No 234
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.76 E-value=1.1e-17 Score=147.89 Aligned_cols=231 Identities=17% Similarity=0.169 Sum_probs=147.1
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+.++++|.++ +.++|+..|.+.++..-.... ..........+.+.+++++++++.|.+.++++++|++|+. +
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~a 112 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAK----LIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAA 112 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh----ccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHH
Confidence 34678888742 667888555554443322211 1111111135779999999999999888888888999986 4
Q ss_pred HHHhcCCC-------CEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619 86 VTHLLGTG-------EEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIGPWTKLVWVESPT 149 (265)
Q Consensus 86 ~~~~~~~g-------~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~ 149 (265)
+..+...+ ++|++.++.|+.+........... ...+..++..|++++++.+.+++++|++++++
T Consensus 113 l~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~ 192 (396)
T PRK02627 113 IKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQ 192 (396)
T ss_pred HHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEeccc
Confidence 54443222 679999999987753321111100 01123445558999999998889999999999
Q ss_pred CCccc-cc---cHHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 150 NPRQQ-IC---DIRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 150 np~G~-~~---~l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
||+|. .. .+++|.++|++||+++|+||+|.. +..+. ......|++ ++||.++ +|++.|+++++++
T Consensus 193 ~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~~--~G~rig~~~~~~~- 267 (396)
T PRK02627 193 GEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGLG--GGVPIGAVLAKEK- 267 (396)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEE--EEcchhh--CCcccEEEEEcHH-
Confidence 99994 43 389999999999999999999872 22111 112235654 6899994 5799999998765
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 220 LAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+.+.+...........++..+..+.+.++
T Consensus 268 ~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 296 (396)
T PRK02627 268 VADVFTPGDHGSTFGGNPLACAAALAVIE 296 (396)
T ss_pred HHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33333222222334455555555444443
No 235
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.75 E-value=2.3e-17 Score=148.26 Aligned_cols=160 Identities=25% Similarity=0.329 Sum_probs=126.1
Q ss_pred HHHHHHHHHhHhCCC-ceE-EecchHHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----C
Q 024619 57 RDALESLLAKLDKAD-RAL-CFTSGMAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----D 128 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~~i-~~~~g~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----d 128 (265)
..++.+.+++++|.+ +.+ ++++|++++. +++++ .++||+|+++++.|+++...+...++..|++++.++.+ |
T Consensus 114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d 193 (447)
T PRK00451 114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD 193 (447)
T ss_pred HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence 444557779999987 344 5555567775 55565 47899999999999999877766667789999998875 8
Q ss_pred HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE--eCCcCCCCCcCCCCCCccEEEeccccc-----
Q 024619 129 LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATKF----- 201 (265)
Q Consensus 129 ~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~--D~~~~~~~~~~~~~~~~di~~~s~sK~----- 201 (265)
++++++++.+++++|++++| |+||.+.|+++|.++|+++|+++++ |. .+.+....+...++|++++|.+||
T Consensus 194 ~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~-~~~g~~~~~~~~~~D~~~~s~~k~~~~~~ 271 (447)
T PRK00451 194 LEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDP-VSLGLLKPPGEYGADIVVGEGQPLGIPLS 271 (447)
T ss_pred HHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcCh-HHhccCCCcccCCCCEEEECCCcCCCCCC
Confidence 99999999989999999999 8999999999999999999999988 43 355655556778999999987775
Q ss_pred cccCCCceeeEEEeechhHH
Q 024619 202 IAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~ 221 (265)
++|| | .|+++.+++.+.
T Consensus 272 ~~Gp-g--~G~l~~~~~~~~ 288 (447)
T PRK00451 272 FGGP-Y--LGFFATRKKLVR 288 (447)
T ss_pred CCCC-C--chHHHhhHHHHh
Confidence 4343 3 688887775543
No 236
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.75 E-value=1.1e-16 Score=141.60 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHhcC----CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-
Q 024619 56 TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLG----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT- 126 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~~----~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 126 (265)
+.+++++.+++++|.+ ..+++++|+ .++.+.+..++ +||+|+++...|.+.. ..+...|++++.++.
T Consensus 106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~----kAi~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI----KAISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH----HHHHHcCCeEEEeeee
Confidence 4778899999999988 688999998 67764444443 5899999998877775 666888999999984
Q ss_pred -------CCHHHHHhhcCC---CceEEEEecCC-CCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCC
Q 024619 127 -------CDLDEVASAIGP---WTKLVWVESPT-NPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL 189 (265)
Q Consensus 127 -------~d~~~l~~~~~~---~~~~i~~~~~~-np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~ 189 (265)
.|++++++++.+ +..++++..++ ...|...|+++|.++|++||+++|+|++|+.+... .....
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~ 261 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKV 261 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccc
Confidence 189999999975 45566666554 44567889999999999999999999999965432 12223
Q ss_pred C-ccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619 190 G-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 226 (265)
Q Consensus 190 ~-~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~ 226 (265)
+ .|++++|++|++..|.+ +|+++.+++.+.+....
T Consensus 262 Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~ 297 (444)
T TIGR03531 262 GRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISK 297 (444)
T ss_pred cCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHH
Confidence 3 59999999999976654 68887877666554443
No 237
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.74 E-value=5.2e-17 Score=142.80 Aligned_cols=229 Identities=16% Similarity=0.122 Sum_probs=146.6
Q ss_pred cceeEeeccCCCC---CCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 9 VSTLLMNFSNEFD---PYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
.+.++++|. +++ ++|..+|.+..+..-.... ... .++. ..+..+++++.+.+..+.+.++++++|++|+.
T Consensus 27 ~G~~~lD~~-s~~~~~~lG~~~p~v~~a~~~~~~~----~~~-~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~ 100 (377)
T PRK02936 27 NGKTYLDFT-SGIAVCNLGHCHPTVTKAVQEQLDD----IWH-VSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANE 100 (377)
T ss_pred CCCEEEECC-cchhhccCCCCCHHHHHHHHHHHHh----ccc-cccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHH
Confidence 356899998 666 8998666655554322221 111 1222 34668888999988877777889999999886
Q ss_pred -HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619 85 -AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 152 (265)
Q Consensus 85 -~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~ 152 (265)
++... ...+++|++.++.|++............. ..+..++.+|++++++.+.+++++|+++++++++
T Consensus 101 ~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~ 180 (377)
T PRK02936 101 AALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEG 180 (377)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCC
Confidence 44322 23346788888888865433212111100 1234556678999999998889999999999988
Q ss_pred cccc----cHHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCceeeEEEeechhHHH
Q 024619 153 QQIC----DIRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 153 G~~~----~l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
|.+. .+++|.++|++||+++|+||+|.. +..+.+ .....|++ ++||.++ +|+++|+++.+++ +.+
T Consensus 181 G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~--~G~~ig~v~~~~~-~~~ 255 (377)
T PRK02936 181 GVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG--NGIPVGAMIGKKE-LGT 255 (377)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc--CCCccEEEEEcHH-HHh
Confidence 8773 389999999999999999999852 211111 12235654 7899994 4688999987764 434
Q ss_pred HHHHHHHhccCCCChhHHHHHHhccC
Q 024619 223 ELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.+...........++..+..+...++
T Consensus 256 ~~~~~~~~~t~~~~~~~~aaa~a~l~ 281 (377)
T PRK02936 256 AFGPGSHGSTFGGNPLAMAAAKEVLQ 281 (377)
T ss_pred hccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33222222223445555555444443
No 238
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.74 E-value=6.8e-17 Score=141.76 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhc------CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619 55 PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLL------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~------~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (265)
...+++++.+++++|.+ ..+++++|++++. ++..+. ++||+|++++++|.++. ..++..|++++.++
T Consensus 59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~ 134 (373)
T TIGR03812 59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYAP 134 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEEe
Confidence 34789999999999986 3567777777764 444332 46789999999998765 45577899999887
Q ss_pred CC-----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--------CCC---CC
Q 024619 126 TC-----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--------RPL---EL 189 (265)
Q Consensus 126 ~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--------~~~---~~ 189 (265)
.+ |++++++++.+++..+++..++||||.+.|+++|.++|+++|+++++|++|+.+... ... ..
T Consensus 135 ~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~ 214 (373)
T TIGR03812 135 LDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLP 214 (373)
T ss_pred eCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCC
Confidence 53 899999998877754444447899999999999999999999999999999754321 011 13
Q ss_pred CccEEEeccccccccCCCceeeEEEeech
Q 024619 190 GADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
+.|.+..|.+||..+|.+. +++++.+++
T Consensus 215 ~~d~~~~s~~K~~~~~~~~-G~~~~~~~~ 242 (373)
T TIGR03812 215 GVQSITIDPHKMGLSPIPA-GGILFRSKS 242 (373)
T ss_pred CCCEEEECccccCCCcCCc-eEEEEeCHH
Confidence 6788899999976544332 344444443
No 239
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.74 E-value=8.3e-17 Score=142.71 Aligned_cols=227 Identities=18% Similarity=0.180 Sum_probs=143.5
Q ss_pred CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
..+.++++|.++ ++++|..+|.+.++..-...+ . ..++.. ..+...++++.++++.+.+.+++++||++|+.
T Consensus 37 ~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~----~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e 111 (403)
T PRK05093 37 QQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEK----L-WHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANE 111 (403)
T ss_pred CCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHh----c-CcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHH
Confidence 345689999733 689999555555543322211 0 111122 34567799999999988788999999998875
Q ss_pred HHHHhc---------CCCCEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619 85 AVTHLL---------GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE 146 (265)
Q Consensus 85 ~~~~~~---------~~g~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 146 (265)
.+..+. ...+.|+..+.+|++........ ......++..++..|++++++.+.+++++|+++
T Consensus 112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaiiie 191 (403)
T PRK05093 112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDDHTCAVVVE 191 (403)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcCCeEEEEEe
Confidence 333322 12456787787777764321111 111123456677789999999998889999999
Q ss_pred cCCCCcccc-cc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCceeeEEEe
Q 024619 147 SPTNPRQQI-CD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 147 ~~~np~G~~-~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
. .|++|.+ .+ +++|+++|++||+++|+||+|.. +..+.. .....| +.|+||.++ +|+++|+++.
T Consensus 192 p-~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pd--i~s~sK~l~--~G~rig~vv~ 266 (403)
T PRK05093 192 P-IQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPD--ILTSAKALG--GGFPIGAMLT 266 (403)
T ss_pred c-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCC--EEEeccccc--CCcceEEEEE
Confidence 5 5556544 22 89999999999999999999872 111211 122356 458899995 5799999998
Q ss_pred echhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 216 KGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
+++.. +.+...........++..++....
T Consensus 267 ~~~i~-~~l~~~~~~~t~~~~~~~~~aa~a 295 (403)
T PRK05093 267 TAEIA-SHFKVGTHGSTYGGNPLACAVAEA 295 (403)
T ss_pred cHHHH-hhcCCCCCCCCCCCCHHHHHHHHH
Confidence 77543 323221222233445555544444
No 240
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.73 E-value=5.8e-17 Score=154.46 Aligned_cols=171 Identities=17% Similarity=0.146 Sum_probs=136.4
Q ss_pred CCccCCC----CCh-hHHHHHHHHHhHhCCCceEEecchH----HHHH-HHHHhcCC-CC----EEEEcCCCCCChHHHH
Q 024619 46 PYDYTRS----GNP-TRDALESLLAKLDKADRALCFTSGM----AALA-AVTHLLGT-GE----EIVAGDDLYGGTDRLL 110 (265)
Q Consensus 46 ~~~y~~~----g~~-~~~~l~~~l~~~~g~~~~i~~~~g~----~al~-~~~~~~~~-g~----~viv~~~~~~~~~~~~ 110 (265)
-+.|.+. |.. ..+++++++++++|.+.+.+..+++ .++. ++..+.++ || +|+++..+|+++...|
T Consensus 554 ~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a 633 (993)
T PLN02414 554 IHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASA 633 (993)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHH
Confidence 3445555 554 4889999999999997666665554 3543 66777766 88 8999999999998555
Q ss_pred HhhcCCCCeEEEeecCC-----CHHHHHhhcCC---CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619 111 SRVTPKTGVVVKRVNTC-----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV 182 (265)
Q Consensus 111 ~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~ 182 (265)
...|++++.++.+ |++++++++.+ ++++|++++|+|.+|...|+++|+++|+++|+++++|.++..+.
T Consensus 634 ----~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~ 709 (993)
T PLN02414 634 ----AMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ 709 (993)
T ss_pred ----HHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc
Confidence 3479999999864 89999999984 78999999999999999999999999999999999999997665
Q ss_pred C--cCCCCCCccEEEeccccccccCCCc---eeeEEEeechhH
Q 024619 183 L--SRPLELGADIVMHSATKFIAGHSDV---MAGVLAVKGERL 220 (265)
Q Consensus 183 ~--~~~~~~~~di~~~s~sK~~~g~~g~---~~G~v~~~~~~~ 220 (265)
. ..+.+.+.|++++|.+|+|++|.|. -.|++.++++..
T Consensus 710 ~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~ 752 (993)
T PLN02414 710 VGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA 752 (993)
T ss_pred cCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhc
Confidence 3 4577899999999999988755430 048888877544
No 241
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.73 E-value=8.8e-17 Score=140.92 Aligned_cols=159 Identities=19% Similarity=0.139 Sum_probs=122.3
Q ss_pred hHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcC----CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLG----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~----~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
..+++++++++++|.+ ..+++++|++++. ++..+.+ ++++|+++++.|.++. ..++..|++++.++.+
T Consensus 60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~ 135 (371)
T PRK13520 60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDD 135 (371)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCC
Confidence 3689999999999976 3567777778875 4444433 5789999999987764 5556778898888753
Q ss_pred ----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc---C-----CCCCCccEEE
Q 024619 128 ----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS---R-----PLELGADIVM 195 (265)
Q Consensus 128 ----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~---~-----~~~~~~di~~ 195 (265)
|++++++++.+++++|++.+++|++|.+.|+++|.++|+++|+++++|++|+.+..+ . ....+.|.+.
T Consensus 136 ~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~ 215 (371)
T PRK13520 136 DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT 215 (371)
T ss_pred CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence 899999999888888888888899999999999999999999999999999855421 1 1124678999
Q ss_pred eccccccccCCCceeeEEEeechhH
Q 024619 196 HSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 196 ~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.|.+||..+|. ++|+++..++..
T Consensus 216 ~s~~K~~~a~~--~~G~~~~~~~~~ 238 (371)
T PRK13520 216 IDPHKMGLAPI--PAGGILFRDESY 238 (371)
T ss_pred ECCccccCccC--CceEEEEcCHHH
Confidence 99999875543 356666555443
No 242
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.73 E-value=1.4e-16 Score=140.98 Aligned_cols=203 Identities=19% Similarity=0.143 Sum_probs=137.2
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV 86 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~ 86 (265)
.+.++++|.++ ++++|...|.+..+..-+.... ........++...+++++++++.+.+.+++++||++|+...
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~A 108 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKL----WHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAA 108 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhc----ccccCccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHH
Confidence 45789999743 8999997666655543222211 11111113466889999999999888899999999988633
Q ss_pred HHhc---------CCCCEEEEcCCCCCChHHHHHhhcCC---------CCeEEEeecCCCHHHHHhhcCCCceEEEEecC
Q 024619 87 THLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK---------TGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 148 (265)
Q Consensus 87 ~~~~---------~~g~~viv~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~ 148 (265)
+.+. ...+.|+..+.+|++........... ....+..++.+|++++++.+.+++++|+++++
T Consensus 109 lk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi 188 (397)
T TIGR03246 109 LKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISDKTCAVIVEPI 188 (397)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhccCeEEEEEecc
Confidence 3332 12456777777777764322121110 01234566777999999999888999999988
Q ss_pred CCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619 149 TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 149 ~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
+++.|.+. .+++|.++|++||+++|+||+|. .|..+. .....+|++ +++|.++ +|++.|+++.+++
T Consensus 189 ~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lg--gG~pigav~~~~~ 264 (397)
T TIGR03246 189 QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL--TSAKALG--GGFPIGAMLTTTE 264 (397)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE--Eeehhhh--CCcceeEEEEcHH
Confidence 88777653 38999999999999999999983 222211 112346766 7899994 4688999988765
Q ss_pred h
Q 024619 219 R 219 (265)
Q Consensus 219 ~ 219 (265)
.
T Consensus 265 i 265 (397)
T TIGR03246 265 I 265 (397)
T ss_pred H
Confidence 3
No 243
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.73 E-value=1.3e-17 Score=145.27 Aligned_cols=158 Identities=28% Similarity=0.369 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC----- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 127 (265)
....+.++..++.+|++...++++|+ .++ .++++++++||+|++++.+|-+.. ..+...|+++++++..
T Consensus 66 G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~----~alil~ga~Pvyi~p~~~~~g 141 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVY----NALILSGAIPVYIPPEDNEYG 141 (417)
T ss_dssp THHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHH----HHHHHHTEEEEEEEEEE-TTS
T ss_pred cHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHH----HHHHHcCCeEEEecCCccccC
Confidence 35899999999999999999888887 777 488999999999999999998887 4456789999988642
Q ss_pred -----CH-----HHHHhhcC--CCce---EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC-----cCCC
Q 024619 128 -----DL-----DEVASAIG--PWTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL-----SRPL 187 (265)
Q Consensus 128 -----d~-----~~l~~~~~--~~~~---~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~-----~~~~ 187 (265)
++ +.+++++. +..+ ++++++|+. .|.+.|+++|+++|++++++|++||||+.-.. ....
T Consensus 142 i~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~ 220 (417)
T PF01276_consen 142 IIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSAL 220 (417)
T ss_dssp -BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCS
T ss_pred CccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchh
Confidence 34 88888885 3444 499999955 89999999999999999999999999973221 2345
Q ss_pred CCCcc-------EEEeccccccccCCCceeeEEEeechh
Q 024619 188 ELGAD-------IVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 188 ~~~~d-------i~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
..+.| +++.|.||.+.+.. +++++..++..
T Consensus 221 ~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~ 257 (417)
T PF01276_consen 221 ALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDR 257 (417)
T ss_dssp STTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCC
T ss_pred hccCccccccceeeeechhhcccccc--cceEEEecCCC
Confidence 66788 99999999997765 57899888875
No 244
>PRK02769 histidine decarboxylase; Provisional
Probab=99.72 E-value=2.2e-16 Score=138.17 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhHhCCC--c--eEEecchHHHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--
Q 024619 56 TRDALESLLAKLDKAD--R--ALCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-- 126 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~--~i~~~~g~~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 126 (265)
..+++.+++++++|.+ + .+++++|++++. ++... ..++++|++++-+|++....+ +..|++...++.
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~----~~lg~~~~~V~~~~ 141 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIA----RLLRIKSRVITSLP 141 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHH----HHcCCCCceeccCC
Confidence 4668888999999975 3 356666778763 33322 356889999999999987554 333444444442
Q ss_pred ---CCHHHHHhhcCCC---ceEEEEecCCCCccccccHHHHHHHHHHcC---CEEEEeCCcCCCCCc-------CCCCCC
Q 024619 127 ---CDLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHG---ALLLVDNSIMSPVLS-------RPLELG 190 (265)
Q Consensus 127 ---~d~~~l~~~~~~~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~---~~li~D~~~~~~~~~-------~~~~~~ 190 (265)
.|++++++++.++ +.+|+++..+|++|.+.|+++|.++|+++| +++++|.+|+.+.++ .....+
T Consensus 142 ~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~ 221 (380)
T PRK02769 142 NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADG 221 (380)
T ss_pred CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCC
Confidence 3889999988765 899999999999999999999999999998 699999999987663 111227
Q ss_pred ccEEEeccccccccCCCceeeEEEeechhHH
Q 024619 191 ADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 191 ~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
+|.++.|.|||+++|.| +|+++.+++.+.
T Consensus 222 vDsis~s~HK~~~~P~g--~G~l~~r~~~~~ 250 (380)
T PRK02769 222 IDSIAISGHKFIGSPMP--CGIVLAKKKYVE 250 (380)
T ss_pred CCEEEECCcccCCCCCC--cEEEEEehhhhh
Confidence 89999999999977988 588888876543
No 245
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.72 E-value=2.6e-16 Score=131.79 Aligned_cols=210 Identities=21% Similarity=0.207 Sum_probs=149.5
Q ss_pred CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEe
Q 024619 45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKR 123 (265)
Q Consensus 45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~ 123 (265)
+.-.|+.. +..+++++++++++|..++++++||++|.. ++.+.++||+.|++..-+|....+......-..+.++..
T Consensus 27 ~~~~YG~D--~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~ 104 (342)
T COG2008 27 GDDVYGED--PTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPI 104 (342)
T ss_pred CCCCCCCC--HHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCceecc
Confidence 33445444 789999999999999999999999999986 788889999999999888866654321111223345555
Q ss_pred ec----CCCHHHHHhhcCC------CceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcCC---CCCc---
Q 024619 124 VN----TCDLDEVASAIGP------WTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIMS---PVLS--- 184 (265)
Q Consensus 124 ~~----~~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~---~~~~--- 184 (265)
++ ..++|+++..+.+ .+.++++.+.++-.|.+++ +++|.++||++|+.|+.|++.-. -.++
T Consensus 105 ~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~ 184 (342)
T COG2008 105 VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVAL 184 (342)
T ss_pred CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCH
Confidence 55 2389999997762 3556666666667899976 57889999999999999998521 1112
Q ss_pred CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC--hhHHHHHHhccCchHhhHHHHhhc
Q 024619 185 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQVC 260 (265)
Q Consensus 185 ~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 260 (265)
.....++|.+..++||..+.| +|.|++-+....+.....++..+..++ .+.++..+..|+.-.++....++|
T Consensus 185 ~~~~~~~D~v~~~~tK~g~~~----~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han 258 (342)
T COG2008 185 KTIKSYVDSVSFCLTKGGGAP----VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHAN 258 (342)
T ss_pred HHHHhhCCEEEEecccCCcce----eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHH
Confidence 122347899999999988655 466666666777778888888887766 344555666666544555544444
No 246
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=99.70 E-value=4e-16 Score=132.64 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=129.2
Q ss_pred CCccCCC-CChh-HHHHHHHHHhHhC----CCceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC
Q 024619 46 PYDYTRS-GNPT-RDALESLLAKLDK----ADRALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 46 ~~~y~~~-g~~~-~~~l~~~l~~~~g----~~~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
.++|+.+ |.|+ +..+.+.....+. .+-.+++++| +.++. +++.+++.||.|+++.++|++.. +..+..
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL----~s~~a~ 168 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSAL----QSMEAL 168 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHH----Hhcccc
Confidence 4788888 8875 6666665552222 2224555555 58886 88999999999999999998887 666888
Q ss_pred CeEEEeecCC----CHHHHHhhcC---------CCceEE-EEecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcCC
Q 024619 118 GVVVKRVNTC----DLDEVASAIG---------PWTKLV-WVESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIMS 180 (265)
Q Consensus 118 g~~~~~~~~~----d~~~l~~~~~---------~~~~~i-~~~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~~ 180 (265)
|++++.++++ ++|.+++.+. ++++++ .++.-+||||....+ ++|.++||+|+++||+||.|..
T Consensus 169 gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~ 248 (472)
T KOG0634|consen 169 GVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF 248 (472)
T ss_pred CceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence 9999999876 6777777653 235555 446778999999765 7899999999999999999863
Q ss_pred CCCc------------------------CCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619 181 PVLS------------------------RPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 225 (265)
Q Consensus 181 ~~~~------------------------~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~ 225 (265)
..+. ..+ ..|++|...||||.+ + ||+|.||+.+++..+...+.
T Consensus 249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii-a-PGlRlG~it~~~~~l~ril~ 318 (472)
T KOG0634|consen 249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII-A-PGLRLGWITGNSLFLKRILD 318 (472)
T ss_pred eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh-c-CcceeEEeecCHHHHHHHhh
Confidence 2221 111 225779999999988 5 57999999988866655443
No 247
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.70 E-value=3.5e-16 Score=138.58 Aligned_cols=205 Identities=14% Similarity=0.097 Sum_probs=134.7
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+.++++|.+. +-.+|..+|.+.++....... ..+.......+..+.+++.++++.+.+.+++++||++|+. +
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~a 104 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQK----LTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETA 104 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHh----cccccccccCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHH
Confidence 34678888732 112555666666554322221 1111111124578899999999998888999999998885 4
Q ss_pred HHHhc----------CCCCEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCCHHHHHhhcC-CCceEEEE
Q 024619 86 VTHLL----------GTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCDLDEVASAIG-PWTKLVWV 145 (265)
Q Consensus 86 ~~~~~----------~~g~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d~~~l~~~~~-~~~~~i~~ 145 (265)
+..+. ..++.|++.+.+|+............. ...+..++..|++++++.+. +++++|++
T Consensus 105 l~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ 184 (400)
T PTZ00125 105 LKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIV 184 (400)
T ss_pred HHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEE
Confidence 44332 134678888888877643321111110 00234455668999999986 67999999
Q ss_pred ecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEe
Q 024619 146 ESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 146 ~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
++++||+|.+.+ +++|.++|++||+++|+||+|. .+..+. ......|+++ ++|+++ .++.+.|++++
T Consensus 185 ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~--~sK~l~-~g~~~ig~v~~ 261 (400)
T PTZ00125 185 EPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVL--LGKALS-GGLYPISAVLA 261 (400)
T ss_pred cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEE--Eccccc-CCCcCcEEEEE
Confidence 999999999987 9999999999999999999985 332211 1223457665 679995 34447899988
Q ss_pred echhH
Q 024619 216 KGERL 220 (265)
Q Consensus 216 ~~~~~ 220 (265)
+++.+
T Consensus 262 ~~~~~ 266 (400)
T PTZ00125 262 NDDVM 266 (400)
T ss_pred cHHHH
Confidence 77543
No 248
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.67 E-value=1.9e-15 Score=134.16 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=112.8
Q ss_pred HHHHHHhHhCCC-ceEEecchHHHH-HHHHHhcCC-------------------------------CCEEEEcCCCCCCh
Q 024619 60 LESLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGT-------------------------------GEEIVAGDDLYGGT 106 (265)
Q Consensus 60 l~~~l~~~~g~~-~~i~~~~g~~al-~~~~~~~~~-------------------------------g~~viv~~~~~~~~ 106 (265)
..++.+++||++ ..+-..||+.|. .++.++++| ||+|+..+..++..
T Consensus 100 ~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGH 179 (493)
T PRK13580 100 AAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGH 179 (493)
T ss_pred HHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCe
Confidence 345667889998 466677888776 577888876 79999776655444
Q ss_pred HHHHHhhcCCCC--eEEEeecC------CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619 107 DRLLSRVTPKTG--VVVKRVNT------CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178 (265)
Q Consensus 107 ~~~~~~~~~~~g--~~~~~~~~------~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~ 178 (265)
.... ......+ .+....++ .|.+++++.+.++++.|++++.+|. |...|+++|.++|+++|+++++|++|
T Consensus 180 lthg-~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH 257 (493)
T PRK13580 180 LTHG-FRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAH 257 (493)
T ss_pred eecC-cccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECch
Confidence 2110 0001111 22222222 3889999999988999999999887 55779999999999999999999999
Q ss_pred CCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 179 MSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 179 ~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
+.|.++-.. ..++|++++|+||++.||. +|+++++++..
T Consensus 258 ~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~ 303 (493)
T PRK13580 258 FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR---GGLVLAKKEYA 303 (493)
T ss_pred hhceeccccchhhcCCCCCCcEEEeCChhhccCCC---eEEEEecHHHH
Confidence 988875111 1368999999999997775 58998876543
No 249
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.67 E-value=2.6e-15 Score=134.85 Aligned_cols=153 Identities=19% Similarity=0.163 Sum_probs=111.9
Q ss_pred HHHHHHhHhCCC-ceEEe----cchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcC------CCCeEEEeecCC
Q 024619 60 LESLLAKLDKAD-RALCF----TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP------KTGVVVKRVNTC 127 (265)
Q Consensus 60 l~~~l~~~~g~~-~~i~~----~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~ 127 (265)
.++.+++++|++ +.+.+ ++|++++. ++.+++++||+|++++..|++....+....+ ..+.++..++++
T Consensus 85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 164 (452)
T PTZ00094 85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN 164 (452)
T ss_pred HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC
Confidence 456889999987 33322 46787875 6888899999999998888887643321111 111333343333
Q ss_pred -----CHHHHHhhcCC-CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEe
Q 024619 128 -----DLDEVASAIGP-WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMH 196 (265)
Q Consensus 128 -----d~~~l~~~~~~-~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~ 196 (265)
|.+++++.+.+ ++++|++. ++.+|...|+++|.++|+++|+++++|++|+.|.++ .+. .+.|++++
T Consensus 165 ~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~~ 241 (452)
T PTZ00094 165 EKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-PYADVVTT 241 (452)
T ss_pred CCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-CCCcEEEc
Confidence 89999998853 56777654 344899999999999999999999999999998874 232 26899999
Q ss_pred ccccccccCCCceeeEEEeech
Q 024619 197 SATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
|+|||+.||.| |+++.++.
T Consensus 242 S~hK~l~GP~G---g~l~~~~~ 260 (452)
T PTZ00094 242 TTHKSLRGPRS---GLIFYRKK 260 (452)
T ss_pred CCccCCCCCCc---eEEEEecc
Confidence 99999988874 77766654
No 250
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.66 E-value=9.2e-17 Score=135.26 Aligned_cols=176 Identities=26% Similarity=0.288 Sum_probs=128.7
Q ss_pred ccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC
Q 024619 48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT 126 (265)
Q Consensus 48 ~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (265)
.|+.. +..+++++.+++++|.+..+++.+|++|.. ++..+++|++.|+..+++|....+.- ......|.+++.++.
T Consensus 24 ~Yg~D--~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~g-a~~~~~G~~~~~l~~ 100 (290)
T PF01212_consen 24 AYGED--PTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETG-AIEELSGAKLIPLPS 100 (290)
T ss_dssp CTTSS--HHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTT-HHHHHTTCEEEEEBE
T ss_pred ccCCC--hhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccc-hhhHhcCcEEEECCC
Confidence 44443 889999999999999999999999998875 77778899999999998775443221 222447888888874
Q ss_pred C-----CHHHHHhhcC------CCceEEEEecCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcC---C---CCCcC
Q 024619 127 C-----DLDEVASAIG------PWTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIM---S---PVLSR 185 (265)
Q Consensus 127 ~-----d~~~l~~~~~------~~~~~i~~~~~~np~-G~~~---~l~~i~~~a~~~~~~li~D~~~~---~---~~~~~ 185 (265)
. +++++++.+. .++++|++++++|.. |.++ ++++|.++|++||+.++.|++.- . +....
T Consensus 101 ~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~ 180 (290)
T PF01212_consen 101 DDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLA 180 (290)
T ss_dssp CTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHH
T ss_pred cccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHH
Confidence 3 6888888875 358899999999964 6665 47899999999999999999942 1 11112
Q ss_pred CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619 186 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 229 (265)
Q Consensus 186 ~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~ 229 (265)
.....+|.+..|++|.++.|. +++++++++.+.+.....+.
T Consensus 181 e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~ 221 (290)
T PF01212_consen 181 EIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKR 221 (290)
T ss_dssp HHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHH
T ss_pred HHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHH
Confidence 223579999999999986664 58888887766554444333
No 251
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.65 E-value=3e-15 Score=132.84 Aligned_cols=228 Identities=16% Similarity=0.148 Sum_probs=145.3
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHH
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA 85 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~ 85 (265)
..+.++++|.+ ++.++|...|.+..+..-+.... ........++...++++.++++.+.+.+++++||++|+..
T Consensus 36 ~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~ 111 (406)
T PRK12381 36 QQGKEYIDFAGGIAVNALGHAHPALREALNEQASKF----WHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEA 111 (406)
T ss_pred CCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhc----ccccCccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHH
Confidence 34568999973 36899999766666554222211 1111111345678899999998888889999999999853
Q ss_pred HHHhc---------CCCCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619 86 VTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIGPWTKLVWVES 147 (265)
Q Consensus 86 ~~~~~---------~~g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 147 (265)
.+.+. .++..|+..+.+|++............. ..+..++.+|++++++.+.+++++|+++
T Consensus 112 Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiE- 190 (406)
T PRK12381 112 ALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIVE- 190 (406)
T ss_pred HHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEEe-
Confidence 33321 2356788888999888643212111100 1234556678999999998889999997
Q ss_pred CCCCcccc-----ccHHHHHHHHHHcCCEEEEeCCcC-CCCCcCC-----CCCCccEEEeccccccccCCCceeeEEEee
Q 024619 148 PTNPRQQI-----CDIRKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 148 ~~np~G~~-----~~l~~i~~~a~~~~~~li~D~~~~-~~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
|.+++|.+ ..+++|.++|++||+++|+||+|. .+..+.. .....|+ .|++|.++ +|++.|+++.+
T Consensus 191 Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~--gG~~ig~~~~~ 266 (406)
T PRK12381 191 PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV--LTTAKALG--GGFPIGAMLTT 266 (406)
T ss_pred CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE--EEehhhhh--CCCceEEEEEc
Confidence 56777654 348999999999999999999983 2222211 1224565 48899995 46899999887
Q ss_pred chhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 217 GERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
++.+ +.+...........++..+.....
T Consensus 267 ~~~~-~~~~~~~~~~t~~~~pl~~aaa~a 294 (406)
T PRK12381 267 EKCA-SVMTVGTHGTTYGGNPLASAVAGK 294 (406)
T ss_pred HHHH-hhcCCCCCCCCCCCCHHHHHHHHH
Confidence 6543 333221122223445555444333
No 252
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.65 E-value=2.7e-15 Score=143.07 Aligned_cols=162 Identities=16% Similarity=0.086 Sum_probs=123.8
Q ss_pred hHHHHHHHHHhHhCCC--c-eEEecch-HHHHH-HHHHh-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619 56 TRDALESLLAKLDKAD--R-ALCFTSG-MAALA-AVTHL-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~-~i~~~~g-~~al~-~~~~~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 127 (265)
..++.++.+++++|++ + .+++++| ++++. ++..+ .++||+|+++.-.|++.. .|...++..|+++..++.+
T Consensus 79 ~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl-~~~~~a~~~G~~v~~v~~~~~ 157 (805)
T PLN02724 79 TIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVL-GIREYALEKGAAAIAVDIEEA 157 (805)
T ss_pred HHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchH-HHHHHHHHcCCeEEeccchhc
Confidence 5889999999999985 3 4667765 58887 44555 688999999888888876 4446667789999888754
Q ss_pred -------------CHHHHHhhc----------CCCceEEEEecCCCCccccccHHHHHHHHHHc--------CCEEEEeC
Q 024619 128 -------------DLDEVASAI----------GPWTKLVWVESPTNPRQQICDIRKIAEMAHAH--------GALLLVDN 176 (265)
Q Consensus 128 -------------d~~~l~~~~----------~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--------~~~li~D~ 176 (265)
+.+++++.+ .+++++|.+++.+|.+|.+.|++.|..+++.. ++++++|.
T Consensus 158 ~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa 237 (805)
T PLN02724 158 ANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237 (805)
T ss_pred cccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh
Confidence 114455442 14568999999999999999999765444432 35799999
Q ss_pred CcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 177 SIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 177 ~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
+++.|..+ +....++|++++|++||+++|.|+ |+++.+++.+
T Consensus 238 aQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~--G~L~vr~~~~ 280 (805)
T PLN02724 238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGL--GALLVRRDAA 280 (805)
T ss_pred hhhcCCCCCChhhcCCCEEEEecceeccCCCCc--eEEEEehhhh
Confidence 99999886 344668999999999999779885 8888887544
No 253
>PLN03032 serine decarboxylase; Provisional
Probab=99.65 E-value=3.4e-15 Score=129.93 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHhHhCCC--ce--EEecchHHHHH-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 55 PTRDALESLLAKLDKAD--RA--LCFTSGMAALA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~~--i~~~~g~~al~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
...+++.+++++++|.+ +. +++++|++|+. ++.... .++..|+++.-+|.+.... ++..|++++.++.+
T Consensus 66 ~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~ka----a~~lg~~~~~V~~d 141 (374)
T PLN03032 66 QFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMEAVKVPTL 141 (374)
T ss_pred HHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHH----HHHcCCCCeEeeeC
Confidence 35778889999999975 23 77777788864 443332 3456888999999888744 44455555555533
Q ss_pred -----CHHHHHhhcCC---CceEEEEecCCCCccccccHHHHHHHHHHcC-----CEEEEeCCcCCCCCcC-------CC
Q 024619 128 -----DLDEVASAIGP---WTKLVWVESPTNPRQQICDIRKIAEMAHAHG-----ALLLVDNSIMSPVLSR-------PL 187 (265)
Q Consensus 128 -----d~~~l~~~~~~---~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~-----~~li~D~~~~~~~~~~-------~~ 187 (265)
|++++++++.+ ++.+|+++..+|++|.+.|+++|.++|+++| +++++|.+++.+..+. ..
T Consensus 142 ~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~ 221 (374)
T PLN03032 142 PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF 221 (374)
T ss_pred CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC
Confidence 89999999875 4778888999999999999999999999996 5899999998765431 11
Q ss_pred CCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 188 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 188 ~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
..++|.++.|.||+.+.|.| +|+++.++..+
T Consensus 222 ~~~vDSis~s~HK~~g~P~g--~G~ll~r~~~~ 252 (374)
T PLN03032 222 RKPIGSVSVSGHKFLGCPMP--CGVALTRKKHV 252 (374)
T ss_pred CcCCcEEEECcccccCCCcC--eEEEEEEchhh
Confidence 23689999999999966887 58888887554
No 254
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.65 E-value=9.7e-15 Score=127.94 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=130.5
Q ss_pred CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC----
Q 024619 53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---- 127 (265)
Q Consensus 53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 127 (265)
|.+...++++.+++++|.+.++.+++|++|+. +....++|||.| +.+.|.... .......|..++.++.+
T Consensus 69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt---~ahIe~~Gav~vDi~~dea~~ 143 (450)
T TIGR02618 69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTT---RYHQEKNGATFVDIIIDEAHD 143 (450)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHH---HHHHHhCCeEEEeeecccccc
Confidence 55889999999999999999999999999986 444568999977 556664443 23346677777666321
Q ss_pred -----------CHHHHHhhcCC----CceEEEEecCCCCc-ccc---ccHHHHHHHHHHcCCEEEEeCCcCCCC--C---
Q 024619 128 -----------DLDEVASAIGP----WTKLVWVESPTNPR-QQI---CDIRKIAEMAHAHGALLLVDNSIMSPV--L--- 183 (265)
Q Consensus 128 -----------d~~~l~~~~~~----~~~~i~~~~~~np~-G~~---~~l~~i~~~a~~~~~~li~D~~~~~~~--~--- 183 (265)
|++++++++++ ++++|.++.++|.. |.. .+++++.++|++||+.|++|.++..+. +
T Consensus 144 ~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~ 223 (450)
T TIGR02618 144 AQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKE 223 (450)
T ss_pred cccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhc
Confidence 79999999874 45578888888865 677 458999999999999999999987642 1
Q ss_pred ------cCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhc
Q 024619 184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 231 (265)
Q Consensus 184 ------~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~ 231 (265)
..+. ....|.+++|+.|..++|. +|+++.+++.+.+..+......
T Consensus 224 re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~---GG~l~~~d~~l~~k~r~~~~~~ 281 (450)
T TIGR02618 224 REQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI---GGFLCMNDDEMFQSAKELVVVF 281 (450)
T ss_pred ccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC---ceEEEeCCHHHHHHHHHHhhhc
Confidence 1111 1247899999999998875 6999888888888777665443
No 255
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.65 E-value=2.3e-15 Score=122.38 Aligned_cols=209 Identities=22% Similarity=0.247 Sum_probs=146.4
Q ss_pred CCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHhc-CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619 45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122 (265)
Q Consensus 45 ~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~~-~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~ 122 (265)
++-.|+.. |...+|+++.++++|.+..++++||+++. .+++.-+ ++|.+|++.+.+|....+.. ......|+.+.
T Consensus 48 gDdVyGeD--~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~g-g~s~l~gv~~~ 124 (384)
T KOG1368|consen 48 GDDVYGED--PTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQG-GISQLAGVHVR 124 (384)
T ss_pred CcccccCC--ccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEeccchheeehhcc-ChhhhccceeE
Confidence 34445444 67899999999999999999999999664 5777765 48999999998886554432 44566777777
Q ss_pred eecCC-----CHHHHHhhcC--------CCceEEEEecCCCCcc-ccccH---HHHHHHHHHcCCEEEEeCCcCCC---C
Q 024619 123 RVNTC-----DLDEVASAIG--------PWTKLVWVESPTNPRQ-QICDI---RKIAEMAHAHGALLLVDNSIMSP---V 182 (265)
Q Consensus 123 ~~~~~-----d~~~l~~~~~--------~~~~~i~~~~~~np~G-~~~~l---~~i~~~a~~~~~~li~D~~~~~~---~ 182 (265)
.+... +++++++++. +.+++|++++.+|-+| .+.|+ .++.++|++||+.+..|++.-+- .
T Consensus 125 tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAava 204 (384)
T KOG1368|consen 125 TVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVA 204 (384)
T ss_pred eeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHH
Confidence 77532 7999999986 2488999999998887 77775 67888999999999999985221 1
Q ss_pred CcCCC---CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCC--hhHHHHHHhccCchHhhHHHH
Q 024619 183 LSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQ 257 (265)
Q Consensus 183 ~~~~~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 257 (265)
.+.+. -..+|-+.-.+||.+++|- +.+++++++.+ .+...+++..+.++. ...++..+-.|..-...+...
T Consensus 205 sgV~vk~i~~~fDSVsiCLSKglgAPV---GSViVG~k~FI-~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~d 280 (384)
T KOG1368|consen 205 SGVPVKKICSAFDSVSICLSKGLGAPV---GSVIVGSKDFI-DKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRAD 280 (384)
T ss_pred cCCCHHHHHHhhhhhhhhhhccCCCCc---ccEEEccHHHH-HHHHHHHHHhcCchhHHHHHHHHHHHHhhcchHHHHHH
Confidence 12122 1135666677999998874 46666666555 556677776666655 344555555555433333333
Q ss_pred hhc
Q 024619 258 QVC 260 (265)
Q Consensus 258 ~~~ 260 (265)
.+.
T Consensus 281 Hk~ 283 (384)
T KOG1368|consen 281 HKR 283 (384)
T ss_pred HHH
Confidence 333
No 256
>PRK15029 arginine decarboxylase; Provisional
Probab=99.65 E-value=2.1e-15 Score=140.31 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619 56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------ 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------ 127 (265)
...+.++..+++||++...++++|+ .++ .++++++++||+|++++++|-+.. ..+...|+++++++..
T Consensus 206 ~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~----~al~L~ga~Pvyl~P~~~~~Gi 281 (755)
T PRK15029 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIE----QGLILTGAKPVYMVPSRNRYGI 281 (755)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCC
Confidence 4889999999999999888888886 676 588889999999999999998887 4557789999998622
Q ss_pred ----C-----HHHHHhhcC--CCce--------EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC-----CC
Q 024619 128 ----D-----LDEVASAIG--PWTK--------LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VL 183 (265)
Q Consensus 128 ----d-----~~~l~~~~~--~~~~--------~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~-----~~ 183 (265)
+ ++.+++++. +..+ ++++++|+. .|.+.|+++|+++|++++++|++||||+.- .+
T Consensus 282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~ 360 (755)
T PRK15029 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIY 360 (755)
T ss_pred ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccCccc
Confidence 3 788888874 2334 899999955 899999999999999999999999999731 12
Q ss_pred c--CCC-----C-CCcc-EEEeccccccccCCCceeeEEEeech
Q 024619 184 S--RPL-----E-LGAD-IVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 184 ~--~~~-----~-~~~d-i~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
+ .+. . .+.| +++.|.||.+.+.. +++++..++.
T Consensus 361 p~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~ 402 (755)
T PRK15029 361 ADHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREG 402 (755)
T ss_pred cccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCC
Confidence 2 222 2 5788 99999999997764 5788887654
No 257
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.63 E-value=2.5e-14 Score=128.53 Aligned_cols=160 Identities=22% Similarity=0.220 Sum_probs=108.2
Q ss_pred CChhHHHHHH----HHHhHhCCC-ceEEe----cchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHH--HhhcCCCCeE
Q 024619 53 GNPTRDALES----LLAKLDKAD-RALCF----TSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL--SRVTPKTGVV 120 (265)
Q Consensus 53 g~~~~~~l~~----~l~~~~g~~-~~i~~----~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~--~~~~~~~g~~ 120 (265)
|....+++++ +..++++.+ +.+.+ .||+.|+ .++.++++|||+|+..+....++.... ....+..+..
T Consensus 74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~ 153 (475)
T PLN03226 74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS 153 (475)
T ss_pred CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence 5555566554 455666766 44544 7898776 588999999999998553222222110 0111212222
Q ss_pred ----EEeecCC------CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC----
Q 024619 121 ----VKRVNTC------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR---- 185 (265)
Q Consensus 121 ----~~~~~~~------d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~---- 185 (265)
...+.++ |.+++++.+. .++++|++. .++ +|...|+++|.++|+++|+++++|++|+.|.+..
T Consensus 154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~ 231 (475)
T PLN03226 154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA 231 (475)
T ss_pred EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence 1122233 8999999886 467766553 333 6778899999999999999999999999888752
Q ss_pred -CCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619 186 -PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 186 -~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
+.. ++|++++|++||+.||.| |++++++.
T Consensus 232 ~p~~-~~Div~~t~hK~L~GP~G---g~I~~~~~ 261 (475)
T PLN03226 232 SPFE-YCDVVTTTTHKSLRGPRG---GMIFFRKG 261 (475)
T ss_pred CCCC-CCeEEEecCcccccCCCc---eEEEEchh
Confidence 222 689999999999988874 88877664
No 258
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.62 E-value=8.1e-15 Score=130.08 Aligned_cols=158 Identities=16% Similarity=0.085 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHhHhCCC----ceEE--ecchHHHHH-HHHHhc--------CCC-----CEEEEcCCCCCChHHHHHhhc
Q 024619 55 PTRDALESLLAKLDKAD----RALC--FTSGMAALA-AVTHLL--------GTG-----EEIVAGDDLYGGTDRLLSRVT 114 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~----~~i~--~~~g~~al~-~~~~~~--------~~g-----~~viv~~~~~~~~~~~~~~~~ 114 (265)
...+++.+++++++|.+ +... +++|++|+. ++.... +.| ..|++++-+|.++. +.+
T Consensus 80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~----ka~ 155 (431)
T TIGR01788 80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWE----KFA 155 (431)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHH----HHH
Confidence 34788889999999876 2333 456678864 443321 112 36888998998886 445
Q ss_pred CCCCeEEEeecCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHc------CCEEEEeCCcCCCC
Q 024619 115 PKTGVVVKRVNTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAH------GALLLVDNSIMSPV 182 (265)
Q Consensus 115 ~~~g~~~~~~~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~------~~~li~D~~~~~~~ 182 (265)
+..|++++.++.+ |++++++++.+++.+|.+...+|.+|.+.|+++|+++|+++ |+++++|.+|+.+.
T Consensus 156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~ 235 (431)
T TIGR01788 156 RYFDVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFI 235 (431)
T ss_pred HHcCceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHH
Confidence 5567777776643 78999999999999999999999999999999999999999 99999999998433
Q ss_pred -------Cc-CCCCCCccEEEeccccccccCCCceeeEEEeech
Q 024619 183 -------LS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 183 -------~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
.. +....++|.+..|.|||+.+|.| +|+++.++.
T Consensus 236 ~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~ 277 (431)
T TIGR01788 236 APFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDE 277 (431)
T ss_pred HHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeCh
Confidence 21 11234678899999999878988 588888875
No 259
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.61 E-value=3.5e-15 Score=131.19 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhHhCCC---ceEEec-chHHHHH-HHHHhcCC-CCEEEEcCCCCCChHHHHHh-hcCCCCe-EEEeecCC
Q 024619 56 TRDALESLLAKLDKAD---RALCFT-SGMAALA-AVTHLLGT-GEEIVAGDDLYGGTDRLLSR-VTPKTGV-VVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~~i~~~-~g~~al~-~~~~~~~~-g~~viv~~~~~~~~~~~~~~-~~~~~g~-~~~~~~~~ 127 (265)
..++.++.+++++|+. ++++++ +|+.++. ++..++++ ++.|+. ...|+.. |.. +.+..|+ +++.++.+
T Consensus 49 ~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~---~~~~~~~~~g~~~v~~~~~~ 124 (378)
T PRK03080 49 LLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK---WATDVVKQLKLEDPRVLEAD 124 (378)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH---HHHHHHhhcCCCCceEeccC
Confidence 4888999999999963 355565 6779986 66777775 444444 4565543 333 3466777 77776643
Q ss_pred -----CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccccc
Q 024619 128 -----DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 -----d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~ 202 (265)
|++++. . ++.|.+++.+|.||.+.|+++|++ +++|+++++|.+++.|..+..... .|++++|.+||+
T Consensus 125 ~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-iD~~~~s~~K~l 196 (378)
T PRK03080 125 YGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-LDVYTFSWQKVL 196 (378)
T ss_pred CCCCCCHhhcC----C-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-CcEEEEehhhhC
Confidence 455432 2 567899999999999999999999 889999999999999998754443 799999999999
Q ss_pred ccCCCceeeEEEeechhHHH
Q 024619 203 AGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~~ 222 (265)
++|+|+ |+++.+++.+..
T Consensus 197 ~~P~G~--g~l~v~~~~~~~ 214 (378)
T PRK03080 197 GGEGGH--GMAILSPRAVER 214 (378)
T ss_pred CCCCce--EEEEECHHHHHh
Confidence 999995 999998866543
No 260
>PLN02624 ornithine-delta-aminotransferase
Probab=99.61 E-value=2.1e-14 Score=129.50 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=133.8
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+.++++|.++ +-.+|...|.+.++..-+.... .+......++...++++.++++++.+.+++++||++|+. +
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~A 148 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKL----TLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETA 148 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhc----CCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHH
Confidence 45678898632 1236777777777765333321 111111244667889999999998888999999999885 4
Q ss_pred HHHhcC---------CCC-EEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCCCHHHHHhhcC---CCceEE
Q 024619 86 VTHLLG---------TGE-EIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTCDLDEVASAIG---PWTKLV 143 (265)
Q Consensus 86 ~~~~~~---------~g~-~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~d~~~l~~~~~---~~~~~i 143 (265)
+..... +++ .|+....+|++............ + ..+..++..|++.+++.+. +++++|
T Consensus 149 lklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaai 228 (474)
T PLN02624 149 IKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAF 228 (474)
T ss_pred HHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEE
Confidence 432211 133 56777777777642211111000 0 1134456668888888775 568899
Q ss_pred EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEE
Q 024619 144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVL 213 (265)
Q Consensus 144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v 213 (265)
++++++|++|.+.+ +++|.++|++||+++|+||+|. .|..+. ......|+++ ++|.++ .+++++|++
T Consensus 229 iiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~--lsK~lg-gG~~pigav 305 (474)
T PLN02624 229 LFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVI--LGKALG-GGVIPVSAV 305 (474)
T ss_pred EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEE--eccccc-CCCCcceee
Confidence 99999999999876 9999999999999999999996 222221 1223467665 589995 455778888
Q ss_pred Eeechh
Q 024619 214 AVKGER 219 (265)
Q Consensus 214 ~~~~~~ 219 (265)
+.+++.
T Consensus 306 ~~~~~i 311 (474)
T PLN02624 306 LADKDV 311 (474)
T ss_pred eecHHH
Confidence 876643
No 261
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.61 E-value=5.2e-14 Score=113.26 Aligned_cols=160 Identities=21% Similarity=0.212 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------ 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------ 127 (265)
|-...+.+.+++|+|.|.+-++.+..++= .++.+++++||.|+++..+|.... -++++.|+++..+|..
T Consensus 61 PpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYtty----vAAEragl~v~eVp~tg~Pey~ 136 (382)
T COG1103 61 PPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTY----VAAERAGLNVAEVPNTGYPEYK 136 (382)
T ss_pred CcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHH----HHHHhcCCeEEecCCCCCCceE
Confidence 55667777799999999777766666885 577788999999999999886665 5668899999999843
Q ss_pred -CHHHHHhhcC-------CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619 128 -DLDEVASAIG-------PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA 198 (265)
Q Consensus 128 -d~~~l~~~~~-------~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~ 198 (265)
++|.+.+.+. ..+.+.+++++...-|.+.|.+.++++|+++|++++...+|..|.++ +..+.+.|++++|.
T Consensus 137 i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSG 216 (382)
T COG1103 137 ITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSG 216 (382)
T ss_pred ecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecC
Confidence 4555555542 34788899999988999999999999999999999999999999986 56677999999999
Q ss_pred ccccccCCCceeeEEEeechhH
Q 024619 199 TKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
||.+.+.+ .+|++..+.+.-
T Consensus 217 HKsmAAs~--PiGvl~~~eE~a 236 (382)
T COG1103 217 HKSMAASA--PIGVLAMSEEWA 236 (382)
T ss_pred ccchhccC--CeeEEeehhHHH
Confidence 99986543 479998876543
No 262
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.61 E-value=1.7e-14 Score=127.37 Aligned_cols=203 Identities=20% Similarity=0.179 Sum_probs=134.2
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-H
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-A 85 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~ 85 (265)
.+.++++|.+ +++++|...|.+.++..-+... ..+.+....++...++.+++.+..+.+.+++++||++|+. +
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~A 109 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEK----LINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGA 109 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHh----cccccccccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHH
Confidence 4578999974 5889999987766665432221 1111111233456677777877666678999999999885 4
Q ss_pred HHHhc------CCC-CEEEEcCCCCCChHHHHHhhcCCCCe---------EEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619 86 VTHLL------GTG-EEIVAGDDLYGGTDRLLSRVTPKTGV---------VVKRVNTCDLDEVASAIGPWTKLVWVESPT 149 (265)
Q Consensus 86 ~~~~~------~~g-~~viv~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~ 149 (265)
+..+. ++| .+|+..+..|++.............. .+...+..|++++++.+.+++++|++++.+
T Consensus 110 ik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~ 189 (395)
T PRK03715 110 IKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQ 189 (395)
T ss_pred HHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCc
Confidence 43332 123 56888888887765332122211111 112233468899999888889999999999
Q ss_pred CCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 150 NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 150 np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+..|.+.+ +++|.++|++||+++|+||+|. .|..+. .....+|++ +++|.+++ |+.+|.++.+++.
T Consensus 190 ~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~--t~gK~lg~--G~p~~av~~~~~i 265 (395)
T PRK03715 190 GEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIM--TLGKGIGG--GVPLAALLAKAEV 265 (395)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCcee--eehhhhhC--CcceEEEEEcccc
Confidence 88888866 9999999999999999999986 222221 223357875 56899964 3557877776654
No 263
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.61 E-value=1.1e-14 Score=137.68 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=124.2
Q ss_pred hHHHHHHHHHhHhCCCceEEe-cchHHHHH-HHHHhc--------CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619 56 TRDALESLLAKLDKADRALCF-TSGMAALA-AVTHLL--------GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~-~~g~~al~-~~~~~~--------~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (265)
...++++++++++|.++.-+. ++|+++-. .++.+- ...+.|+++.-.|+... ..++..|++++.++
T Consensus 531 ~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP----asa~~~G~~Vv~V~ 606 (939)
T TIGR00461 531 LIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP----ASAAMAGMQVVPVN 606 (939)
T ss_pred HHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH----HHHHHCCCEEEEec
Confidence 488999999999999964444 44556543 333321 23467889999998886 55677899999998
Q ss_pred CC-----CHHHHHhhcC---CCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCC--CcCCCCCCccEE
Q 024619 126 TC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIV 194 (265)
Q Consensus 126 ~~-----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~--~~~~~~~~~di~ 194 (265)
.+ |+++|++++. +++++|++++|+| +|.+.+ +++|+++|+++|.++++|.++..+. +..+.+.+.|++
T Consensus 607 ~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~ 685 (939)
T TIGR00461 607 CDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVC 685 (939)
T ss_pred cCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEE
Confidence 64 8999999997 4899999999999 799877 9999999999999999999996533 346778899999
Q ss_pred Eeccccccc-----cCCCceeeEEEeech
Q 024619 195 MHSATKFIA-----GHSDVMAGVLAVKGE 218 (265)
Q Consensus 195 ~~s~sK~~~-----g~~g~~~G~v~~~~~ 218 (265)
++|.+|+|+ |+|| .|++.++++
T Consensus 686 ~~s~HKtf~~P~G~GGPg--~G~i~vr~~ 712 (939)
T TIGR00461 686 HLNLHKTFCIPHGGGGPG--MGPIGVKSH 712 (939)
T ss_pred EecCCccCCCCCCCCCCC--eEEEEEhhh
Confidence 999999888 6666 499988864
No 264
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.60 E-value=2.7e-14 Score=126.59 Aligned_cols=202 Identities=16% Similarity=0.192 Sum_probs=132.2
Q ss_pred cceeEeeccCCCCCC----CCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 9 VSTLLMNFSNEFDPY----GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
.+.++++|. + +|+ |...|.+.++..-.... . .+.......+...++++.+++++|.+.+++++||++|+.
T Consensus 35 ~g~~~lD~~-s-~~~~~~~Gh~~p~v~~a~~~~~~~-~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e 108 (401)
T TIGR01885 35 EGKRYLDFL-S-AYSAVNQGHCHPKIVKALTEQAQK-L---TLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVE 108 (401)
T ss_pred CCCEEEEcc-c-CHhhccCCCCCHHHHHHHHHHHHh-c---cccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHH
Confidence 346789998 4 354 44455555554322221 1 111111144678999999999999888999999998885
Q ss_pred -HHHHh---------cCC-CCEEEEcCCCCCCh-HHHHHhhcC------CCC---eEEEeecCCCHHHHHhhcC---CCc
Q 024619 85 -AVTHL---------LGT-GEEIVAGDDLYGGT-DRLLSRVTP------KTG---VVVKRVNTCDLDEVASAIG---PWT 140 (265)
Q Consensus 85 -~~~~~---------~~~-g~~viv~~~~~~~~-~~~~~~~~~------~~g---~~~~~~~~~d~~~l~~~~~---~~~ 140 (265)
++..+ +.+ .+.|+....+|++. ...+ .... ..+ ..+..++..|++++++.+. +++
T Consensus 109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 187 (401)
T TIGR01885 109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAI-SMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNV 187 (401)
T ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHH-hCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCE
Confidence 44432 123 45677788888764 2222 1111 112 2345566678888888774 567
Q ss_pred eEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCcee
Q 024619 141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMA 210 (265)
Q Consensus 141 ~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~ 210 (265)
.+|+++++++++|.+.+ +++|.++|++||+++|+||+|. .|..+. ......|+++ ++|.+++ ++++.
T Consensus 188 ~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~--~gK~l~~-g~~~i 264 (401)
T TIGR01885 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVL--LGKALSG-GVYPV 264 (401)
T ss_pred EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEE--eeccccC-CCCCc
Confidence 88999999999999976 9999999999999999999984 221121 1223567765 5799953 55678
Q ss_pred eEEEeechhH
Q 024619 211 GVLAVKGERL 220 (265)
Q Consensus 211 G~v~~~~~~~ 220 (265)
|+++.+++.+
T Consensus 265 g~v~~~~~i~ 274 (401)
T TIGR01885 265 SAVLADDDVM 274 (401)
T ss_pred EEEEEcHHHH
Confidence 9888775433
No 265
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.60 E-value=2.4e-14 Score=127.77 Aligned_cols=227 Identities=14% Similarity=0.107 Sum_probs=141.5
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC-CceEEecchHHHHH-
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALA- 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~~~i~~~~g~~al~- 84 (265)
.+.++++|.++ +..+|..+|.+.++..-+... .. .|. ..++...++++.+++.+.. +.++++++|++|+.
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~---~~--~~~-~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~ 119 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALER---GT--SYG-APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMS 119 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHh---CC--cCC-CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHH
Confidence 35678888643 334788887777775433222 11 232 1234577788888887643 46888888999985
Q ss_pred HHHHh--cCCCCEEEEcCCCCCChHHHHHhhc----------------CCCCeEEEeecCCCHHHHHhhcC---CCceEE
Q 024619 85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVT----------------PKTGVVVKRVNTCDLDEVASAIG---PWTKLV 143 (265)
Q Consensus 85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~----------------~~~g~~~~~~~~~d~~~l~~~~~---~~~~~i 143 (265)
++... ...+++|+..+++|+++........ +..+..+..++..|++++++.+. +++++|
T Consensus 120 Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aav 199 (423)
T TIGR00713 120 AVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGV 199 (423)
T ss_pred HHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEE
Confidence 44322 3356899999999999753221100 00111234445568899988886 568899
Q ss_pred EEe-cCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEE
Q 024619 144 WVE-SPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVL 213 (265)
Q Consensus 144 ~~~-~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v 213 (265)
+++ .++| +|.+.+ +++|.++|++||+++|+||+|.....+ .......|++ +++|.++ +|+++|++
T Consensus 200 i~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~--~G~pig~v 274 (423)
T TIGR00713 200 IVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIG--GGLPVGAF 274 (423)
T ss_pred EEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhc--CCCceeee
Confidence 887 4555 898865 799999999999999999999532211 1122345754 7999994 56889999
Q ss_pred EeechhHHHHHHH---HHHhccCCCChhHHHHHHhcc
Q 024619 214 AVKGERLAKELYF---LQNAEGSGLAPFDCWICLRGV 247 (265)
Q Consensus 214 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 247 (265)
+++++.+ +.+.. .........++..++..+..|
T Consensus 275 ~~~~~i~-~~~~~~~~~~~~~T~~~~~~~~aaa~a~l 310 (423)
T TIGR00713 275 GGRREIM-ERLAPEGPVYQAGTLSGNPLAMAAGLATL 310 (423)
T ss_pred eEHHHHH-HhhCcCCCeeeccCCCCCHHHHHHHHHHH
Confidence 8877543 32321 112223345565555544433
No 266
>PLN02271 serine hydroxymethyltransferase
Probab=99.60 E-value=7.1e-14 Score=124.94 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=113.8
Q ss_pred HHHHhHhCCCc-----eEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHH-----hhcCCCCeEEEeec--C--
Q 024619 62 SLLAKLDKADR-----ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS-----RVTPKTGVVVKRVN--T-- 126 (265)
Q Consensus 62 ~~l~~~~g~~~-----~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~-----~~~~~~g~~~~~~~--~-- 126 (265)
++..++||.+. .+-.-||+.|. .++.++++|||+|+..+..|+++..... ..+...|..+..++ .
T Consensus 201 era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~ 280 (586)
T PLN02271 201 ERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP 280 (586)
T ss_pred HHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc
Confidence 55567788552 45556898776 5788899999999998888877753321 11233454444433 3
Q ss_pred ----CCHHHHHh-hcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEe
Q 024619 127 ----CDLDEVAS-AIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMH 196 (265)
Q Consensus 127 ----~d~~~l~~-~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~ 196 (265)
.|.+++++ +...++++|++.+..+| ...|++++.++|+++|+++++|.+|..|.+. +|.. ++|++++
T Consensus 281 ~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~ 357 (586)
T PLN02271 281 QTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTS 357 (586)
T ss_pred ccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEe
Confidence 28899998 55688999999887787 6789999999999999999999999988773 3444 4899999
Q ss_pred ccccccccCCCceeeEEEeec
Q 024619 197 SATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~ 217 (265)
|.|||+.||.| |+++.++
T Consensus 358 TTHKtLrGPrG---G~I~~r~ 375 (586)
T PLN02271 358 TTHKSLRGPRG---GIIFYRK 375 (586)
T ss_pred CCcccCCCCCc---eEEEecc
Confidence 99999999975 7777765
No 267
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.59 E-value=1.8e-14 Score=123.19 Aligned_cols=232 Identities=20% Similarity=0.237 Sum_probs=155.0
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHH
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALA 84 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~ 84 (265)
..+.++|+|.+ .-..+|.+.|.++.+..-+....+...... -++...++.+.+.+..+ .+.+++.+||++|+.
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~----~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~E 114 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLF----YNEPQAELAEKLVELSPFADRVFFCNSGAEANE 114 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccccc----CChHHHHHHHHHHhhCccccEEEEcCCcHHHHH
Confidence 44578888854 344599998888887654333322221112 23568899999999996 778999999999997
Q ss_pred HHHHhc----C-C-CCEEEEcCCCCCChHHHHHh------hcCCCC---eEEEeecCCCHHHHHhhcCCCceEEEEecCC
Q 024619 85 AVTHLL----G-T-GEEIVAGDDLYGGTDRLLSR------VTPKTG---VVVKRVNTCDLDEVASAIGPWTKLVWVESPT 149 (265)
Q Consensus 85 ~~~~~~----~-~-g~~viv~~~~~~~~~~~~~~------~~~~~g---~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~ 149 (265)
+.+.+. . + ..+|+....+|++....... ..+.++ -.+.++|..|++++++++.+++.+|+++..+
T Consensus 115 aAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQ 194 (404)
T COG4992 115 AALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQ 194 (404)
T ss_pred HHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEeccc
Confidence 544432 2 2 34677777777655311100 111111 1234556679999999999999999999999
Q ss_pred CCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 150 NPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 150 np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
--.|.+.+ ++++.++|++||+++|.||+|. .|..+. -....+||+ ++.|.++| |+.+|.++.+ +.
T Consensus 195 GEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~--tlaK~LgG--G~PigA~la~-~~ 269 (404)
T COG4992 195 GEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDIL--TLAKALGG--GFPIGAMLAT-EE 269 (404)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEE--EeeccccC--CccceeeEEc-hh
Confidence 98888853 7999999999999999999984 333332 224457888 46999964 4888998887 44
Q ss_pred HHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 220 LAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
...........++.+-+|..++.....++
T Consensus 270 ~~~~~~~G~HgSTfGGNpLacAv~~a~l~ 298 (404)
T COG4992 270 IASAFTPGDHGSTFGGNPLACAVALAVLE 298 (404)
T ss_pred hhhcCCCCcccCCCCcCHHHHHHHHHHHH
Confidence 44444444444555666766666444444
No 268
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.58 E-value=3e-14 Score=136.56 Aligned_cols=189 Identities=23% Similarity=0.281 Sum_probs=140.7
Q ss_pred CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHH
Q 024619 19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAALA-AVTH 88 (265)
Q Consensus 19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~ 88 (265)
+..|++...|++++...+... . +...|+|. |..+ ..++++.++++.|.+ +.-++.+++++.. ++++
T Consensus 82 g~G~y~~~~P~vi~~~i~~~~-~---~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a 157 (954)
T PRK05367 82 GQGYYGTHTPPVILRNILENP-A---WYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALA 157 (954)
T ss_pred CCCCCCCcCcHHHHHHHHhCc-c---hhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHh
Confidence 455677777776644432222 1 23345554 4433 778889999999998 4556666666654 4444
Q ss_pred h-cCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 89 L-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 89 ~-~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
+ .++ +++|++++..|+++...|...++..|++++.++.++ ++. .+++.++++..| |.+|.+.|+++|+++|
T Consensus 158 ~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d~~---~~~~~~vlvq~p-~~~G~i~d~~~i~~~a 231 (954)
T PRK05367 158 KRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--ALD---HDDVFGVLLQYP-GTSGEVRDYTALIAAA 231 (954)
T ss_pred hhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--CCC---cccEEEEEEecC-CCCeeeccHHHHHHHH
Confidence 4 344 489999999999999998888899999999999754 111 345667777777 5699999999999999
Q ss_pred HHcCCEEEEeCCc-CCCCCcCCCCCCccEEEeccccc-----cccCCCceeeEEEeechhH
Q 024619 166 HAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 166 ~~~~~~li~D~~~-~~~~~~~~~~~~~di~~~s~sK~-----~~g~~g~~~G~v~~~~~~~ 220 (265)
|++|+++++|..+ +.+....+.+.|+||++++.+|| ++|| + .|+++++++..
T Consensus 232 h~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP-~--aGflavr~~~~ 289 (954)
T PRK05367 232 HARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGP-H--AAYFAVRDAYK 289 (954)
T ss_pred HHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCC-C--EEEEEECHHHH
Confidence 9999999999877 55566678899999999999999 7666 4 69999987644
No 269
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.57 E-value=1.9e-13 Score=120.23 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=125.1
Q ss_pred CChhHHHHHHHHHhHhCCCceEEecchHHHHHHH-HHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec------
Q 024619 53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------ 125 (265)
Q Consensus 53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~-~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~------ 125 (265)
|.|...++++.+++++|.+..+.+++|++|+.++ ...+++||.| +...|.... .......|...+.++
T Consensus 76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt---~ahI~~~Ga~fvDi~~d~a~~ 150 (460)
T PRK13237 76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTT---RYHQELNGGIFVDIIIDEAHD 150 (460)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhh---HHHHHhCCcEEEeeecccccc
Confidence 4478999999999999999999999999998744 3458999965 444444333 232455676655442
Q ss_pred ---------CCCHHHHHhhcCC----CceEEEEecCCCCc-cccc---cHHHHHHHHHHcCCEEEEeCCcCCCCC-----
Q 024619 126 ---------TCDLDEVASAIGP----WTKLVWVESPTNPR-QQIC---DIRKIAEMAHAHGALLLVDNSIMSPVL----- 183 (265)
Q Consensus 126 ---------~~d~~~l~~~~~~----~~~~i~~~~~~np~-G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~----- 183 (265)
..|++++++++++ ++++|.+..++|.. |... ++++|.++|++||+.|++|.++..+..
T Consensus 151 ~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~ 230 (460)
T PRK13237 151 AQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKE 230 (460)
T ss_pred cccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcc
Confidence 1289999999874 34567777788887 5554 689999999999999999999987621
Q ss_pred ------cCCC-------CCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHH
Q 024619 184 ------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ 228 (265)
Q Consensus 184 ------~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~ 228 (265)
.... ....|.+++|++|.+.++. +|+++.+++.+.+..+...
T Consensus 231 re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~---GG~i~t~D~eL~~~~r~~~ 285 (460)
T PRK13237 231 REEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI---GGFLAMNDEELFDEAKELV 285 (460)
T ss_pred cccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC---ceEEEECCHHHHHHHHHhc
Confidence 1111 1237999999999997764 6999999998888776664
No 270
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.56 E-value=9.7e-14 Score=122.01 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=97.8
Q ss_pred eEEecchHHHHH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcC------CCCe---EEEeecCCCHHHHHhhcCCCc
Q 024619 73 ALCFTSGMAALA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNTCDLDEVASAIGPWT 140 (265)
Q Consensus 73 ~i~~~~g~~al~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~------~~g~---~~~~~~~~d~~~l~~~~~~~~ 140 (265)
.++++||++|+. ++... ..++++|++.+..|++.......... ..+. .+...+..|++.+++.+.+++
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~ 166 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNT 166 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCe
Confidence 467788888875 43332 34567888888888764322111111 1111 122234568999999888888
Q ss_pred eEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccccccccCCCcee
Q 024619 141 KLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSATKFIAGHSDVMA 210 (265)
Q Consensus 141 ~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~sK~~~g~~g~~~ 210 (265)
++|++++++|++|.+.+ ++++.++|+++|+++|+||+|.. +..+.. .....|++ ||||.++ + |+++
T Consensus 167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~-~-G~~i 242 (375)
T PRK04260 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLA-N-GVPV 242 (375)
T ss_pred EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--Eeccccc-C-Ccce
Confidence 99999999999998854 89999999999999999999852 211111 12346754 8999994 3 5889
Q ss_pred eEEEeechh
Q 024619 211 GVLAVKGER 219 (265)
Q Consensus 211 G~v~~~~~~ 219 (265)
|+++.+++.
T Consensus 243 g~~~~~~~~ 251 (375)
T PRK04260 243 GAMLAKSSL 251 (375)
T ss_pred EEEEEcHHH
Confidence 999988754
No 271
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.54 E-value=1.4e-13 Score=131.96 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHh----cCCCC----EEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619 56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHL----LGTGE----EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~----~~~g~----~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (265)
...++++++++++|.++.-+..+|+ ++. ..++.+ .++|+ +|++++..|++.. ..++..|++++.++
T Consensus 543 ~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp----~sa~~~G~~vv~v~ 618 (954)
T PRK05367 543 LIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNP----ASAVMAGMKVVVVA 618 (954)
T ss_pred HHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhH----HHHHHCCCEEEEEC
Confidence 4888999999999999766666554 554 333222 24555 5999999998886 34467799999988
Q ss_pred CC-----CHHHHHhhcCC---CceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCC--CcCCCCCCccEE
Q 024619 126 TC-----DLDEVASAIGP---WTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIV 194 (265)
Q Consensus 126 ~~-----d~~~l~~~~~~---~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~--~~~~~~~~~di~ 194 (265)
.+ |++++++++.+ ++.+|++.+|++. |.+ .|+++|+++|+++|+++++|.++..+. +..+.+.|.|++
T Consensus 619 ~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~ 697 (954)
T PRK05367 619 CDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVS 697 (954)
T ss_pred CCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEE
Confidence 64 78999988854 5778888998875 554 789999999999999999999997553 345678899999
Q ss_pred EeccccccccCCCce---eeEEEeech
Q 024619 195 MHSATKFIAGHSDVM---AGVLAVKGE 218 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~---~G~v~~~~~ 218 (265)
++|+||||+.|.|.= .|++.+++.
T Consensus 698 ~~s~HK~f~~P~G~GGPg~G~l~vr~~ 724 (954)
T PRK05367 698 HLNLHKTFCIPHGGGGPGVGPIGVKAH 724 (954)
T ss_pred EecCcccCCCCcCCCCCceEEEeeccc
Confidence 999999986444320 368877753
No 272
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.54 E-value=1.4e-13 Score=113.48 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=140.6
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCC-CCccCCCCC---hhHHHHHHHHHhHhCCC-ceEEecchH-HH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENG-PYDYTRSGN---PTRDALESLLAKLDKAD-RALCFTSGM-AA 82 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~y~~~g~---~~~~~l~~~l~~~~g~~-~~i~~~~g~-~a 82 (265)
..-.+|-+. .+.+|..++....+.+-.....+... .-.+.+..- ..-+.+-.+++.+.|+. ..++++.++ -.
T Consensus 28 lp~~viyLd--gnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~n 105 (407)
T COG3844 28 LPGGVIYLD--GNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSIN 105 (407)
T ss_pred CCCCeEEee--ccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchH
Confidence 333445554 45688777555444332222222211 122222111 24667888899999987 455555555 44
Q ss_pred HH-HHHHhc--CCCCEEEEcCC-CCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 83 LA-AVTHLL--GTGEEIVAGDD-LYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 83 l~-~~~~~~--~~g~~viv~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
+. .+.+.+ ++|+.||+++. .++.-.+.....++..++....--.+.++++++++..++.+|++++.+..||+..|+
T Consensus 106 l~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm 185 (407)
T COG3844 106 LFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDM 185 (407)
T ss_pred HHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHHHHHhhccceEEEEeccccccccceeeH
Confidence 54 555543 45888888766 444444444455555554322222347889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
.+|.+++++||++++.|-+|+.|.++ .....+.|+.+++.+|+++|.||...|+-+.++
T Consensus 186 ~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~ 245 (407)
T COG3844 186 RAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPR 245 (407)
T ss_pred HHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccc
Confidence 99999999999999999999999987 444668999999999999999998666555443
No 273
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.54 E-value=4.8e-14 Score=130.27 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=122.3
Q ss_pred hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619 56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------ 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------ 127 (265)
...+.++..++.||++...++++|+ .++ .++++++.+||.|++++++|-+.... .+...|++++++...
T Consensus 175 ~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~~n~~Gi 251 (720)
T PRK13578 175 AAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETARNPFGF 251 (720)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeeccccccCC
Confidence 4889999999999999888888886 777 47888999999999999999887631 246789999998521
Q ss_pred ----C-----HHHHHhhcCCC----------ceEEEEecCCCCccccccHHHHHHH-HHHcCCEEEEeCCcCCCCC----
Q 024619 128 ----D-----LDEVASAIGPW----------TKLVWVESPTNPRQQICDIRKIAEM-AHAHGALLLVDNSIMSPVL---- 183 (265)
Q Consensus 128 ----d-----~~~l~~~~~~~----------~~~i~~~~~~np~G~~~~l~~i~~~-a~~~~~~li~D~~~~~~~~---- 183 (265)
+ .+.+++++.+. .+++++++|+. .|.+.|+++|+++ ++.++ +|++||||+.=..
T Consensus 252 ~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~ 329 (720)
T PRK13578 252 IGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPM 329 (720)
T ss_pred cCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcc
Confidence 3 45577777532 58899999955 8999999999999 67778 9999999862211
Q ss_pred -----cCCCCCCcc----EEEeccccccccCCCceeeEEEeechh
Q 024619 184 -----SRPLELGAD----IVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 184 -----~~~~~~~~d----i~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
....+.+.| +++.|.||.+.+.. +++++..++..
T Consensus 330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~ 372 (720)
T PRK13578 330 MADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNH 372 (720)
T ss_pred cccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcc
Confidence 123456788 99999999997764 46788776643
No 274
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.53 E-value=5.1e-13 Score=113.10 Aligned_cols=162 Identities=27% Similarity=0.290 Sum_probs=119.6
Q ss_pred hHHHH-HHHHHhHhCCC-ceEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE--EEeecCC---
Q 024619 56 TRDAL-ESLLAKLDKAD-RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV--VKRVNTC--- 127 (265)
Q Consensus 56 ~~~~l-~~~l~~~~g~~-~~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~--- 127 (265)
..|.+ .++.+++||++ ..+-..||++|. .+++++++|||+|+-.+-.+.++.... .-....|.- .+..+++
T Consensus 72 ~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg-~~v~~sG~~~~~v~Y~vd~et 150 (413)
T COG0112 72 EVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHG-SPVNFSGKLFNVVSYGVDPET 150 (413)
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCC-CCCCccceeEEeEeccccccc
Confidence 34433 35667889999 577888999776 588999999999998777776665322 112223333 3333322
Q ss_pred ---CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCCccEEEecc
Q 024619 128 ---DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIVMHSA 198 (265)
Q Consensus 128 ---d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~~di~~~s~ 198 (265)
|.|++++... .++++|+.-....| ...|.+++.++|++.|+++++|.+|- .|.+++|... .|++++|.
T Consensus 151 ~~IDyD~~~k~a~e~kPK~ii~G~SaY~--r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTT 227 (413)
T COG0112 151 GLIDYDEVEKLAKEVKPKLIIAGGSAYS--RPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTT 227 (413)
T ss_pred CccCHHHHHHHHHHhCCCEEEECccccc--cccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCc
Confidence 8889888875 67888876443332 46799999999999999999999994 5566788887 99999999
Q ss_pred ccccccCCCceeeEEEeechhHHHHH
Q 024619 199 TKFIAGHSDVMAGVLAVKGERLAKEL 224 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~~~~~ 224 (265)
||+|.||. +|+|.++++++.+..
T Consensus 228 HKTlrGPr---GG~Il~~~eel~kki 250 (413)
T COG0112 228 HKTLRGPR---GGIILTNDEELAKKI 250 (413)
T ss_pred ccCCCCCC---ceEEEeccHHHHHHh
Confidence 99999986 699999886665543
No 275
>PLN00144 acetylornithine transaminase
Probab=99.53 E-value=3.2e-13 Score=118.79 Aligned_cols=227 Identities=16% Similarity=0.123 Sum_probs=144.6
Q ss_pred CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
..+.++++|.++ +..+|...|.+..+..-+.... .+ ++.. .++...++.+.+.+..+.+.+.+.+||++|+.
T Consensus 12 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~~-~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e 86 (382)
T PLN00144 12 VEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTL----AH-VSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANE 86 (382)
T ss_pred CCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhc----CC-ccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHH
Confidence 345789999643 4469998888777765333221 11 1111 34567788888888776677889999999885
Q ss_pred -HHHHh---cC------C------CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCCCHHHHHhhcC-C
Q 024619 85 -AVTHL---LG------T------GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTCDLDEVASAIG-P 138 (265)
Q Consensus 85 -~~~~~---~~------~------g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~d~~~l~~~~~-~ 138 (265)
++... .. + ..+|+....+|++............ + ..+..++..|++.+++.+. .
T Consensus 87 ~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 166 (382)
T PLN00144 87 AAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG 166 (382)
T ss_pred HHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC
Confidence 33322 11 0 2568888888888754322211110 0 1134556668999998885 5
Q ss_pred CceEEEEecCCCCccccc--c--HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccCCCc
Q 024619 139 WTKLVWVESPTNPRQQIC--D--IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGHSDV 208 (265)
Q Consensus 139 ~~~~i~~~~~~np~G~~~--~--l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~~g~ 208 (265)
++++|+++..+||.|... . +++|.++|++||+++|+||+|.. +..+. ......| +.+++|.++ + |+
T Consensus 167 ~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD--i~t~sK~l~-~-G~ 242 (382)
T PLN00144 167 KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD--IMTLAKPLA-G-GL 242 (382)
T ss_pred CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC--EEEeccccc-C-Cc
Confidence 688999998899955543 3 79999999999999999999862 22221 2334567 557899994 3 58
Q ss_pred eeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHH
Q 024619 209 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 244 (265)
Q Consensus 209 ~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (265)
++|+++.+++.. +.+...........++..+....
T Consensus 243 pig~v~~~~~~~-~~~~~~~~~~T~~~~pl~~aaa~ 277 (382)
T PLN00144 243 PIGAVLVTEKVA-SAINPGDHGSTFAGGPLVCNAAL 277 (382)
T ss_pred ceEEEEEcHHHH-hccCCCCCCCCCCCCHHHHHHHH
Confidence 999999876543 32222122333444555555544
No 276
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.52 E-value=1.5e-13 Score=129.39 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=122.9
Q ss_pred CccCC---C-CCh-hHHHHHHHHHhHhCCCceEEec-chHHHH-HHHHHhc----C---C-CCEEEEcCCCCCChHHHHH
Q 024619 47 YDYTR---S-GNP-TRDALESLLAKLDKADRALCFT-SGMAAL-AAVTHLL----G---T-GEEIVAGDDLYGGTDRLLS 111 (265)
Q Consensus 47 ~~y~~---~-g~~-~~~~l~~~l~~~~g~~~~i~~~-~g~~al-~~~~~~~----~---~-g~~viv~~~~~~~~~~~~~ 111 (265)
..|.+ . |.. ...++++.+++++|.+.+-+.. +|+++- ..++++- . + .++|+++.-.|+++.
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp---- 605 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP---- 605 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH----
Confidence 45665 2 664 5999999999999999766655 566665 3444431 1 2 467889998887775
Q ss_pred hhcCCCCeEEEeecCC-----CHHHHHhhcC---CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCC
Q 024619 112 RVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVL 183 (265)
Q Consensus 112 ~~~~~~g~~~~~~~~~-----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~ 183 (265)
..+...|++++.++.+ |++++++.+. +++++|++.+|++-.+...++++|+++|+++|+++++|.++..+..
T Consensus 606 asa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~ 685 (954)
T PRK12566 606 ASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQV 685 (954)
T ss_pred HHHHHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhcc
Confidence 3356679999999874 8999999986 6788999999987655556799999999999999999999975444
Q ss_pred --cCCCCCCccEEEeccccccccCCCc
Q 024619 184 --SRPLELGADIVMHSATKFIAGHSDV 208 (265)
Q Consensus 184 --~~~~~~~~di~~~s~sK~~~g~~g~ 208 (265)
..+.+.|.|+++++++|||++|.|.
T Consensus 686 ~l~~Pg~~GADi~~~s~HKtf~~P~G~ 712 (954)
T PRK12566 686 GLARPADIGADVSHMNLHKTFCIPHGG 712 (954)
T ss_pred CCCChhhcCCCEEEecCCcccCcCccC
Confidence 4568899999999999999877764
No 277
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.52 E-value=2.4e-13 Score=121.38 Aligned_cols=229 Identities=17% Similarity=0.146 Sum_probs=142.3
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHH-
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALA- 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~- 84 (265)
.+.++++|.++ +.++|..+|.+..+..-.... ....|. ..+...++++++.+.+ +.+.+.++++|++|+.
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~----~~~~~~--~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~ 121 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK----GLSFGA--PTELEVELAELVIELVPSIEMVRMVNSGTEATMS 121 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh----CCcCCC--CCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHH
Confidence 45688999743 367899766666554322221 111111 3356778888888875 4567888899999986
Q ss_pred HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcC---------C-CCe------EEEeecCCCHHHHHhhcC---CCceEE
Q 024619 85 AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTP---------K-TGV------VVKRVNTCDLDEVASAIG---PWTKLV 143 (265)
Q Consensus 85 ~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~---------~-~g~------~~~~~~~~d~~~l~~~~~---~~~~~i 143 (265)
++... ...+++|+..+++|+++......... . .+. ....++..|++++++.+. +++++|
T Consensus 122 Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aai 201 (426)
T PRK00062 122 AIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAV 201 (426)
T ss_pred HHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEE
Confidence 44432 23367899999999997532211100 0 011 123344567888887774 468899
Q ss_pred EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEEE
Q 024619 144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLA 214 (265)
Q Consensus 144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~ 214 (265)
+++...+.+|.+.+ +++|.++|++||+++|+||+|.....+ .......|+ .+++|.++ .|+++|+++
T Consensus 202 ivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi--~~~gK~l~--~G~p~ga~~ 277 (426)
T PRK00062 202 IVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDL--TTLGKIIG--GGLPVGAFG 277 (426)
T ss_pred EEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcch--HhhhhHhh--CCCcceeee
Confidence 99988888999977 899999999999999999999622111 111223565 57899995 356678887
Q ss_pred eechhHHHHHHH---HHHhccCCCChhHHHHHHhccC
Q 024619 215 VKGERLAKELYF---LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 215 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.+++ +.+.+.. .........++..+...+..|+
T Consensus 278 ~~~~-i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~ 313 (426)
T PRK00062 278 GRRE-IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLK 313 (426)
T ss_pred EHHH-HHHhhccCCCceecccCcCCHHHHHHHHHHHH
Confidence 7654 4343321 1122233455555555444443
No 278
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.51 E-value=2.8e-13 Score=117.07 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=138.2
Q ss_pred ceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC-CceEEecchHHHHH-H
Q 024619 10 STLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA-DRALCFTSGMAALA-A 85 (265)
Q Consensus 10 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~-~~~i~~~~g~~al~-~ 85 (265)
++++|+|..++.. +|..+|++..+..-+.. .+..|+... ..--++.+.+.+++.. +.+-+++||++|.. +
T Consensus 52 Gn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~-----~G~~fg~Pt-e~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsA 125 (432)
T COG0001 52 GNEYIDYVLGWGPLILGHAHPAVVEAVQEQLE-----RGLSFGAPT-ELEVELAELLIERVPSIEKVRFVNSGTEATMSA 125 (432)
T ss_pred CCEeeehhccCcccccCCCCHHHHHHHHHHHH-----hcCCCCCCC-HHHHHHHHHHHHhcCcccEEEEecchhHHHHHH
Confidence 4678888644444 88888887777653332 234444331 2244566777777766 78999999998864 4
Q ss_pred HHHh--cCCCCEEEEcCCCCCChHHHHHhhcC----------CCC------eEEEeecCCCHHHHHhhcC---CCceEEE
Q 024619 86 VTHL--LGTGEEIVAGDDLYGGTDRLLSRVTP----------KTG------VVVKRVNTCDLDEVASAIG---PWTKLVW 144 (265)
Q Consensus 86 ~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~----------~~g------~~~~~~~~~d~~~l~~~~~---~~~~~i~ 144 (265)
++.. +...|+|+..+.+|+.....+.--+. ..| ..++.++.+|++.+++++. ++.++|+
T Consensus 126 iRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVI 205 (432)
T COG0001 126 IRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVI 205 (432)
T ss_pred HHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEE
Confidence 4332 55578999999999888755421111 011 1244455668999988886 4789999
Q ss_pred EecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCC-----CCcCCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619 145 VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 145 ~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~-----~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
++....-.|.+.| +++|.++|+++|+++|+||+.-.. -........+|+. ++.|.++| |+.+|++.+
T Consensus 206 vEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGG--GlP~ga~gG 281 (432)
T COG0001 206 VEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGG--GLPIGAFGG 281 (432)
T ss_pred eccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcC--Ccceeeecc
Confidence 9887666788865 799999999999999999997422 2223344567887 57999854 688999987
Q ss_pred echhHH
Q 024619 216 KGERLA 221 (265)
Q Consensus 216 ~~~~~~ 221 (265)
+.+.+.
T Consensus 282 r~eiM~ 287 (432)
T COG0001 282 RAEIME 287 (432)
T ss_pred HHHHHh
Confidence 775543
No 279
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.51 E-value=1.2e-12 Score=110.15 Aligned_cols=172 Identities=27% Similarity=0.402 Sum_probs=116.8
Q ss_pred hHHHHHHHHHhHhCCCceEE---ecchHHHHH-HHHHhcCCCCEEE-EcCCCCCChHHHH------HhhcCCCCeEEEee
Q 024619 56 TRDALESLLAKLDKADRALC---FTSGMAALA-AVTHLLGTGEEIV-AGDDLYGGTDRLL------SRVTPKTGVVVKRV 124 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~---~~~g~~al~-~~~~~~~~g~~vi-v~~~~~~~~~~~~------~~~~~~~g~~~~~~ 124 (265)
-|+.+++-+++.||+++.++ +.||+.|++ ++..+++|||+++ +...-|....... ...++.+|++...+
T Consensus 55 GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v 134 (403)
T PF06838_consen 55 GRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREV 134 (403)
T ss_dssp HHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE-
T ss_pred cHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEE
Confidence 49999999999999998877 558999997 8899999999988 4555666555443 12345688999999
Q ss_pred cCC-----CHHHHHhhcCCCceEEEEecCC----CCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCC-cCCCCCCcc
Q 024619 125 NTC-----DLDEVASAIGPWTKLVWVESPT----NPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGAD 192 (265)
Q Consensus 125 ~~~-----d~~~l~~~~~~~~~~i~~~~~~----np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~-~~~~~~~~d 192 (265)
++. |.+.+++++++++++|++--.. -|+=.+.+++++++++|+. ++++++|.+|+...- ..|.+.|.|
T Consensus 135 ~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGAD 214 (403)
T PF06838_consen 135 PLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGAD 214 (403)
T ss_dssp -B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-S
T ss_pred eecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchh
Confidence 854 8999999999999999984331 1222335678888888875 789999999997654 578899999
Q ss_pred EEEeccccccccCCCceeeEEEeechhHHHHHHHH
Q 024619 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL 227 (265)
Q Consensus 193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~ 227 (265)
++.+|+=|..+|.----+|+++++++.+.....++
T Consensus 215 l~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RL 249 (403)
T PF06838_consen 215 LMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRL 249 (403)
T ss_dssp EEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHH
T ss_pred heeccceeCCCCCccCcCCEEechHHHHHHHHhhh
Confidence 99999999876543334799999987765544333
No 280
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.51 E-value=1.3e-13 Score=124.88 Aligned_cols=160 Identities=20% Similarity=0.179 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhHhCC-------------C--ceEEecchHHHH-HHHHH----hcC----------------------C
Q 024619 55 PTRDALESLLAKLDKA-------------D--RALCFTSGMAAL-AAVTH----LLG----------------------T 92 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~-------------~--~~i~~~~g~~al-~~~~~----~~~----------------------~ 92 (265)
..-+.+.++++++++. + ..+++++|++|+ .++.. .+. +
T Consensus 129 ~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 208 (522)
T TIGR03799 129 PLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYD 208 (522)
T ss_pred HHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCC
Confidence 4466677888888641 1 257777888664 33322 121 1
Q ss_pred CCEEEEcCCCCCChHHHHHhhcCCCCe---EEEeecCC-----CHHHHHhhcC----CCceEEEEe--cCCCCccccccH
Q 024619 93 GEEIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PWTKLVWVE--SPTNPRQQICDI 158 (265)
Q Consensus 93 g~~viv~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~~~----~~~~~i~~~--~~~np~G~~~~l 158 (265)
+..|++++-+|.+.. +.++..|+ +++.++.+ |++++++++. ++++.+.+. ..++.+|.+.|+
T Consensus 209 ~~~v~~S~~~H~S~~----kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl 284 (522)
T TIGR03799 209 GLAILVSERGHYSLG----KAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPL 284 (522)
T ss_pred ceEEEECCCchHHHH----HHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCH
Confidence 346888888988876 44444555 56666654 7899988875 455544444 556789999999
Q ss_pred HHHHHHHHHcCCEEEEeCCcCCCCCcCC------CC-CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 159 RKIAEMAHAHGALLLVDNSIMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D~~~~~~~~~~~------~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
++|.++|+++|+++++|.+|+.+....+ .. .++|.++.|.|||+.+|.| +|+++.++...
T Consensus 285 ~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~ 351 (522)
T TIGR03799 285 DEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPAL 351 (522)
T ss_pred HHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHH
Confidence 9999999999999999999986654322 22 2689999999999999988 58888887554
No 281
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.51 E-value=8.1e-13 Score=107.89 Aligned_cols=179 Identities=21% Similarity=0.321 Sum_probs=121.1
Q ss_pred CCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHhc----CCCC--EEE-EcCCCCCChHHHH--
Q 024619 46 PYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLL----GTGE--EIV-AGDDLYGGTDRLL-- 110 (265)
Q Consensus 46 ~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~~----~~g~--~vi-v~~~~~~~~~~~~-- 110 (265)
-..|... |.. +.+++...+.+.+|-+ ..+.+|+|+ .+...+..++ ..|+ .|+ --.|.|.+|....
T Consensus 67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~ 146 (417)
T COG3977 67 LCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLE 146 (417)
T ss_pred HhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccC
Confidence 3456555 774 6999999999998754 588888887 5555444443 2343 344 4678888774221
Q ss_pred HhhcCCCCeEEEeec------CCCHHHHHhhcCCCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 111 SRVTPKTGVVVKRVN------TCDLDEVASAIGPWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 111 ~~~~~~~g~~~~~~~------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
.+.+-...-++..++ ..|++++. +.+++.+|+++.|.||||.+. .+.+|-++|++||+++++|.+|+.+
T Consensus 147 ~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P 224 (417)
T COG3977 147 EDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP 224 (417)
T ss_pred ccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC
Confidence 011111111111111 23677764 457899999999999999883 5889999999999999999999976
Q ss_pred CCc------CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHH
Q 024619 182 VLS------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 229 (265)
Q Consensus 182 ~~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~ 229 (265)
... .+.-.+.-+.|.|+||. |.||.|+|.++...+ +.+.+..++.
T Consensus 225 FP~iifsd~~~~w~~NiilC~SLSK~--GLPG~R~GIiIane~-viqaitnmn~ 275 (417)
T COG3977 225 FPGIIFSDATPLWNENIILCMSLSKL--GLPGSRCGIIIANEK-VIQAITNMNG 275 (417)
T ss_pred CCceecccccccCCCCEEEEeehhhc--CCCCcceeEEEccHH-HHHHHHhccc
Confidence 543 23344567999999994 788999999987664 4454555443
No 282
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.2e-14 Score=118.97 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=147.4
Q ss_pred CcceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC--CC-hhHHHHHHHHHhHhCCCceEEecchHHHHH
Q 024619 8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS--GN-PTRDALESLLAKLDKADRALCFTSGMAALA 84 (265)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~--g~-~~~~~l~~~l~~~~g~~~~i~~~~g~~al~ 84 (265)
..+..++||. +++|+|....+.+-............ +.+-+|. |+ ..+-.+++.+++++|+++.++++.|.+++.
T Consensus 91 i~G~~~~N~a-S~NfL~l~~~~~ike~a~~~lrkyGv-GsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~ 168 (467)
T KOG1358|consen 91 IDGKDVLNFA-SANFLGLIENEEIKEEASFTLRKYGV-GSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIE 168 (467)
T ss_pred ecCceeeccc-chhhhhhcccHHHHHHHHHHHHHhCC-CCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhh
Confidence 3456799999 99999998776655443221111111 1222222 44 468899999999999999999999998885
Q ss_pred -HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCC-------------ceEEEEecCCC
Q 024619 85 -AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPW-------------TKLVWVESPTN 150 (265)
Q Consensus 85 -~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~-------------~~~i~~~~~~n 150 (265)
++.++.+.||.|.+++....... .-.+...-++.++...|.++++..+.+. .+.|+++...-
T Consensus 169 S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~ 244 (467)
T KOG1358|consen 169 SAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYA 244 (467)
T ss_pred hcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeecc
Confidence 89999999999988877665444 3334455577788888888887665422 24678899988
Q ss_pred CccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC----------CCCccEEEeccccccccCCCceeeEEEeec
Q 024619 151 PRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 151 p~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~----------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
++|.+.|+++|+++..++...+|.||.++.|..+... ..+.|++++|+.-.+++. +|+.+++.
T Consensus 245 N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~----GgFc~G~~ 317 (467)
T KOG1358|consen 245 NTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASG----GGFCAGKS 317 (467)
T ss_pred CCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccccc----Cceeecce
Confidence 8999999999999999999999999999988775211 135799999999988543 46666544
No 283
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=99.50 E-value=4.5e-13 Score=114.32 Aligned_cols=202 Identities=27% Similarity=0.313 Sum_probs=155.6
Q ss_pred eEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHH
Q 024619 12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAA 82 (265)
Q Consensus 12 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~a 82 (265)
.+.+|- +..|++..-||++.+.....+ . +...|+|+ |... .-+.+..++++.|.+ +.-.+..++++
T Consensus 75 ~~~sfi-G~GyY~~~~P~vI~rnile~p-e---wyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAa 149 (450)
T COG0403 75 VFTSFI-GAGYYDTYTPPVILRNILENP-E---WYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAA 149 (450)
T ss_pred hhhhhc-cCcccCCcCcHHHHHHhhcCc-c---ccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHH
Confidence 455666 778999999998886543322 2 44456655 3333 677888999999988 56666666533
Q ss_pred H-HHHH--Hhc-CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcc-cccc
Q 024619 83 L-AAVT--HLL-GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ-QICD 157 (265)
Q Consensus 83 l-~~~~--~~~-~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G-~~~~ 157 (265)
- ++++ ..- ++.++++++...|+.+...++..++-.|++++.++.+|.+++++....++.++++..|+ ..| ...|
T Consensus 150 AEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~-~~G~~~~d 228 (450)
T COG0403 150 AEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPN-TFGIVEED 228 (450)
T ss_pred HHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCC-CCCccchh
Confidence 3 2333 332 33689999999999999999999999999999999999999999833578999999996 477 6678
Q ss_pred HHHHHHHHHHcCCEEEEe-CCcCCCCCcCCCCCCccEEEecccc-----ccccCCCceeeEEEeechhHHH
Q 024619 158 IRKIAEMAHAHGALLLVD-NSIMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D-~~~~~~~~~~~~~~~~di~~~s~sK-----~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
+++|.+.+|++|.++++= |.-+.+.+..|.++|.||++++.+. .|+||. .|+..++++..++
T Consensus 229 ~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPh---ag~fA~~~~~~R~ 296 (450)
T COG0403 229 LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPH---AGYFAVKDEFKRQ 296 (450)
T ss_pred HHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcc---eeeeeEhHhHhhc
Confidence 999999999999876654 6677888889999999999999887 676665 6899888866543
No 284
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.50 E-value=7.8e-13 Score=117.17 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=139.3
Q ss_pred CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHH
Q 024619 8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALA 84 (265)
Q Consensus 8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~ 84 (265)
..+.++++|.++ +..+|...|.+..+..-+... ..+......++...++.+.+.+... .+.+.+.+||++|+.
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e 112 (408)
T PRK04612 37 DQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGK----LWHTSNVFYSAPPLKLAEELVTASRFAEKVFLCNSGTEANE 112 (408)
T ss_pred CCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHh----ccccccccCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHH
Confidence 345688998643 455898888887775433222 1111111234556778888887763 356888889999985
Q ss_pred -HHHHh--c----C--C-CCEEEEcCCCCCChHHHHHhhcC----CCC-----eEEEeecCCCHHHHHhhcCC-CceEEE
Q 024619 85 -AVTHL--L----G--T-GEEIVAGDDLYGGTDRLLSRVTP----KTG-----VVVKRVNTCDLDEVASAIGP-WTKLVW 144 (265)
Q Consensus 85 -~~~~~--~----~--~-g~~viv~~~~~~~~~~~~~~~~~----~~g-----~~~~~~~~~d~~~l~~~~~~-~~~~i~ 144 (265)
++... . . + ..+|+....+|++.......... ..+ ..+..++.+|.+.+++.+.+ ++.+|+
T Consensus 113 ~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi 192 (408)
T PRK04612 113 AAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVM 192 (408)
T ss_pred HHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEE
Confidence 43322 1 1 1 24688888888887543211111 011 12345566789999988863 566666
Q ss_pred EecCCCCcccccc-----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC---CCCCccEEEeccccccccCCCceeeEEEe
Q 024619 145 VESPTNPRQQICD-----IRKIAEMAHAHGALLLVDNSIM-SPVLSRP---LELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 145 ~~~~~np~G~~~~-----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~---~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
++.. +++|.+.+ +++|.++|++||+++|+||+|. .+..+.. ...+.+..+.+++|.++ +|++.|+++.
T Consensus 193 ~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~--~G~piga~~~ 269 (408)
T PRK04612 193 LEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALG--GGFPIGAMLA 269 (408)
T ss_pred ECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhc--CCCceEEEEE
Confidence 6654 55555522 8999999999999999999986 2222211 12244555668899994 3588999987
Q ss_pred echhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 216 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+++. .+.+...........++..+....+.|+
T Consensus 270 ~~~~-~~~~~~~~~~~t~~~~p~~~aaa~a~L~ 301 (408)
T PRK04612 270 GPKV-AETMQFGAHGTTFGGNPLAAAVARVALR 301 (408)
T ss_pred CHHH-HhhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 7643 3333222222233345666555444443
No 285
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.49 E-value=4.3e-14 Score=119.87 Aligned_cols=162 Identities=28% Similarity=0.392 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCC---CChHHHHHhhcCCCCeEEEeecC---CCHH
Q 024619 57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLY---GGTDRLLSRVTPKTGVVVKRVNT---CDLD 130 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~---~~~~~~~~~~~~~~g~~~~~~~~---~d~~ 130 (265)
...+++.++++.|+++.+++++.++|+.+++.-+.+|.+|+++...- +..++ +.+..+..|.++++|-. ..++
T Consensus 49 ~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~~EvIvsRGelVeiGgsFR-ip~vm~~sGa~lvEVGttN~t~~~ 127 (367)
T PF03841_consen 49 YAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFR-IPDVMRQSGARLVEVGTTNRTHLS 127 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 56678888999999999999999999876666556788899887643 33322 23677889999998853 4689
Q ss_pred HHHhhcCCCceEEEEecCCCCc--ccc--ccHHHHHHHHHHcCCEEEEeCCcC---------C---CCCcCCCCCCccEE
Q 024619 131 EVASAIGPWTKLVWVESPTNPR--QQI--CDIRKIAEMAHAHGALLLVDNSIM---------S---PVLSRPLELGADIV 194 (265)
Q Consensus 131 ~l~~~~~~~~~~i~~~~~~np~--G~~--~~l~~i~~~a~~~~~~li~D~~~~---------~---~~~~~~~~~~~di~ 194 (265)
++++++.++|.+++-.+++|.. |.. .+++++++++++||+++++|..-+ . +........|.|++
T Consensus 128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV 207 (367)
T PF03841_consen 128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV 207 (367)
T ss_dssp ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred cccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence 9999999999999888887764 434 478999999999999999997642 1 22234556799999
Q ss_pred EeccccccccCCCceeeEEEeechhHHH
Q 024619 195 MHSATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
++|..|.++||. .|+++++++.+..
T Consensus 208 ~fSGdKlLGGPQ---aGiI~Gkk~lI~~ 232 (367)
T PF03841_consen 208 TFSGDKLLGGPQ---AGIIVGKKELIEK 232 (367)
T ss_dssp EEETTSSSSS-S----EEEEEEHHHHHH
T ss_pred EEECCCcCCCCC---eEEEEeCHHHHHH
Confidence 999999998875 7999999877654
No 286
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.49 E-value=8.7e-13 Score=108.14 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHhcCCCCEEEEc-CCCCCChHHHHHhhcCCCCeEEEeecCC---
Q 024619 56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHLLGTGEEIVAG-DDLYGGTDRLLSRVTPKTGVVVKRVNTC--- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~~~~g~~viv~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 127 (265)
..+++.+-++..|... ..++-++|..++. ++..++.|||.|++. ...| -+.+.+.+++.|++|..++.+
T Consensus 51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~w---g~ra~D~~~r~ga~V~~v~~~~G~ 127 (385)
T KOG2862|consen 51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTW---GQRAADCARRYGAEVDVVEADIGQ 127 (385)
T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechH---HHHHHHHHHhhCceeeEEecCccc
Confidence 3667777777777554 3555667778886 677899999998864 3344 333468889999999998754
Q ss_pred --CHHHHHhhcC-CCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecccccc
Q 024619 128 --DLDEVASAIG-PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI 202 (265)
Q Consensus 128 --d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~sK~~ 202 (265)
.+|.+.+.+. .++++|++++..+.||.+.| ++.+-++|++|++++++|.+-+.|... .-.++++|+......|.+
T Consensus 128 ~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL 207 (385)
T KOG2862|consen 128 AVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKAL 207 (385)
T ss_pred CccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhc
Confidence 7899999887 57899999999999999999 688899999999999999998887764 455789999999999999
Q ss_pred ccCCCceeeEEEeechhHH
Q 024619 203 AGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~~~~ 221 (265)
++|+|+ +.+.++++.+.
T Consensus 208 ~aP~GL--siisfS~ka~~ 224 (385)
T KOG2862|consen 208 GAPAGL--SIISFSDKALE 224 (385)
T ss_pred CCCCCc--ceeecCHHHHH
Confidence 999997 77877765543
No 287
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.48 E-value=1.1e-12 Score=114.29 Aligned_cols=229 Identities=16% Similarity=0.138 Sum_probs=150.3
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV 86 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~ 86 (265)
.+.++++|.++ ...+|...|++..+..-+.... .+......++...++++.++++.+.+.+++++||++|+.+.
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~A 97 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKL----VVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAA 97 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhc----CCccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHH
Confidence 45788998642 4569998888887654333221 11111124567888999999998878899999999998633
Q ss_pred HHh--cCCC-CEEEEcCCCCCChHHHHHhhcC----CCC-----eEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccc
Q 024619 87 THL--LGTG-EEIVAGDDLYGGTDRLLSRVTP----KTG-----VVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQ 154 (265)
Q Consensus 87 ~~~--~~~g-~~viv~~~~~~~~~~~~~~~~~----~~g-----~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~ 154 (265)
+.+ ..+| ++|+..+.+|++.......... ..+ ..+..++.+|.+.+++.+.+++++|++++.....|.
T Consensus 98 lklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~ 177 (364)
T PRK04013 98 LKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGI 177 (364)
T ss_pred HHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCC
Confidence 332 2234 8899999888887533211100 011 123455667899999999888999999998877776
Q ss_pred cc-c---HHHHHHHHHHcCCEEEEeCCcCC---CCCc--CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHH
Q 024619 155 IC-D---IRKIAEMAHAHGALLLVDNSIMS---PVLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 225 (265)
Q Consensus 155 ~~-~---l~~i~~~a~~~~~~li~D~~~~~---~~~~--~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~ 225 (265)
.. | ++++.++|++||+++|+||++.. |... ......+|+++ ++|.+++ |+..+.++.+.+. ..
T Consensus 178 ~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~--~gK~lgg--G~P~~a~~~~~~~-~~--- 249 (364)
T PRK04013 178 VPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVT--MGKGIGN--GVPVSLTLTNFDV-ER--- 249 (364)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEE--ecccccC--CceeEEEEecccc-cC---
Confidence 64 4 89999999999999999999862 2221 12244578875 5999964 4677877776543 11
Q ss_pred HHHHhccCCCChhHHHHHHhccCch
Q 024619 226 FLQNAEGSGLAPFDCWICLRGVKTM 250 (265)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (265)
.....+..-+|..++..+..|+.+
T Consensus 250 -~~~~~T~~gnp~~~aaa~a~l~~i 273 (364)
T PRK04013 250 -GKHGSTFGGNPLACKAVAVTLRIL 273 (364)
T ss_pred -CCcCCCCCcCHHHHHHHHHHHHHH
Confidence 112334455566666655555543
No 288
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.48 E-value=5.1e-13 Score=127.84 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=135.6
Q ss_pred EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CCh-hHHHHHHHHHhHhCCC--ceEEecchHHHH
Q 024619 13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNP-TRDALESLLAKLDKAD--RALCFTSGMAAL 83 (265)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~-~~~~l~~~l~~~~g~~--~~i~~~~g~~al 83 (265)
..+|. +..+++...|+.+....... .. ....|++. |.. ...++++.++++.|.+ ++-++.+++++.
T Consensus 104 ~~~fi-G~G~y~~~~P~~v~~~i~~~-~~---~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaa 178 (993)
T PLN02414 104 FKSYI-GMGYYNTHVPPVILRNILEN-PG---WYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAA 178 (993)
T ss_pred ccccc-CCCCCCccCCHHHHHHHHhC-hH---HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHH
Confidence 33444 45555555555553332221 11 22334444 333 3778899999999998 455666666666
Q ss_pred H-HHHHh-cCC--CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619 84 A-AVTHL-LGT--GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 159 (265)
Q Consensus 84 ~-~~~~~-~~~--g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~ 159 (265)
. ++++. .++ +++|++++..|+++...|...++..|++++.++.++.+ ...+.+..+++..| |.+|.+.|++
T Consensus 179 ea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~----~~~~~v~~vlvq~P-~~~G~v~dv~ 253 (993)
T PLN02414 179 EAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD----YSSGDVCGVLVQYP-ATDGEVLDYA 253 (993)
T ss_pred HHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc----cccCceEEEEEecC-CCCeEEcCHH
Confidence 5 44444 454 47899999999999999988899999999999975422 12334556665566 4599999999
Q ss_pred HHHHHHHHcCCEEEEeCCcCCCC--CcCCCCCCccEEEecccccc-----ccCCCceeeEEEeechhH
Q 024619 160 KIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFI-----AGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 160 ~i~~~a~~~~~~li~D~~~~~~~--~~~~~~~~~di~~~s~sK~~-----~g~~g~~~G~v~~~~~~~ 220 (265)
+|+++||++|+++++ .++..+. +..+.+.|+||++++.+||. +||. .|+++++++..
T Consensus 254 ~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~---aGflavr~~~~ 317 (993)
T PLN02414 254 EFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPH---AAFLATSQEYK 317 (993)
T ss_pred HHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCC---eeEEEECHHHH
Confidence 999999999999999 6665443 33578899999999999997 4443 69999888654
No 289
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.48 E-value=2.4e-13 Score=118.71 Aligned_cols=158 Identities=12% Similarity=0.042 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHhHhCCC--c-eEEecc-hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCH
Q 024619 55 PTRDALESLLAKLDKAD--R-ALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDL 129 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~-~i~~~~-g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~ 129 (265)
...+++++.++++++++ . ++++++ |+.++. ++..++.+ +.+++....|..............+ ++..++.+..
T Consensus 41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~ 118 (361)
T TIGR01366 41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG 118 (361)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence 45889999999999973 2 444444 678886 66677643 4445556666555443323221223 4555554444
Q ss_pred HHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccccccCCCce
Q 024619 130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM 209 (265)
Q Consensus 130 ~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g~~ 209 (265)
+.+...+.+++++|.+++..|.||.+.|+++| ++++|+++++|.+++.|......+. .|++++|.+|++++|+|
T Consensus 119 ~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-~D~~~~s~~K~lg~~~G-- 192 (361)
T TIGR01366 119 SAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-TDVYYFAPQKNFASDGG-- 192 (361)
T ss_pred CCCCCccCCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-CCEEEEEchhhcCCCCc--
Confidence 45555566789999999999999999999888 5889999999999999998755553 89999999999987776
Q ss_pred eeEEEeechhH
Q 024619 210 AGVLAVKGERL 220 (265)
Q Consensus 210 ~G~v~~~~~~~ 220 (265)
.++++.+++.+
T Consensus 193 l~~~~~s~~~~ 203 (361)
T TIGR01366 193 LWLAIMSPAAL 203 (361)
T ss_pred eEEEEECHHHH
Confidence 36666676554
No 290
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.47 E-value=1.1e-12 Score=117.19 Aligned_cols=233 Identities=13% Similarity=0.110 Sum_probs=138.4
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCC-CCChhHHHHHHHHHhHhCC---CceEEecchHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA---DRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~a 82 (265)
.+.++++|.+ ++..+|..+|.+.++...+... ..+.+.. .+++...++.+++.+..+. +.+++++||++|
T Consensus 39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea 114 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK----LSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEA 114 (425)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhh----CCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHH
Confidence 3467888853 2344788877777665432221 1222222 2456677899999887753 368899999987
Q ss_pred HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCC-----CC-------eEEEeecCC--------CHHHHHhhcC--
Q 024619 83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TG-------VVVKRVNTC--------DLDEVASAIG-- 137 (265)
Q Consensus 83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~-----~g-------~~~~~~~~~--------d~~~l~~~~~-- 137 (265)
+. ++... ...+..|+..+++|++........... .+ .....++.+ +++.+++.+.
T Consensus 115 ~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~ 194 (425)
T PRK08088 115 VENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKND 194 (425)
T ss_pred HHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhc
Confidence 74 33221 223455666699998886543222110 01 111112211 1445766663
Q ss_pred ---CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCCC---CCCccEEEeccccccccCC
Q 024619 138 ---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRPL---ELGADIVMHSATKFIAGHS 206 (265)
Q Consensus 138 ---~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~~---~~~~di~~~s~sK~~~g~~ 206 (265)
+++++|+++......|.+.+ +++|.++|+++|+++|+||+|.. +..+... ..+.+.-+.||||.++ +
T Consensus 195 ~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~--~ 272 (425)
T PRK08088 195 AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIA--G 272 (425)
T ss_pred cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEecccc--C
Confidence 46788999887766676644 89999999999999999999873 2222111 2233344689999994 4
Q ss_pred CceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 207 DVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 207 g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|+++|+++.+.+.+ +.+...........++..+..+...|+
T Consensus 273 G~rig~v~~~~~~~-~~~~~~~~~~t~~~~~~~~~a~~~~l~ 313 (425)
T PRK08088 273 GFPLAGVTGRAEVM-DAIAPGGLGGTYAGNPIACAAALAVLK 313 (425)
T ss_pred CCcceeeEecHHHH-hhcCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 69999999876544 333222233334455555555444433
No 291
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.47 E-value=8.2e-13 Score=118.23 Aligned_cols=232 Identities=17% Similarity=0.111 Sum_probs=137.4
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-C-CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-K-ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g-~~~~i~~~~g~~al~ 84 (265)
.+.++++|.++ +..+|...|.+..+..-+.... .........++...+++++++++. + .+.+.+.+||++|+.
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e 117 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKL---MHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIE 117 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHH
Confidence 35678998654 5679977777776654322211 111111124467889999999988 3 234566689999985
Q ss_pred HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-----CCe-----EEEeecCC-----------------CHHHHHh
Q 024619 85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TGV-----VVKRVNTC-----------------DLDEVAS 134 (265)
Q Consensus 85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-----~g~-----~~~~~~~~-----------------d~~~l~~ 134 (265)
..+.+ ......|+..+.+|++.......+... .+. .+..++.+ +++++++
T Consensus 118 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (433)
T PRK08117 118 GALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197 (433)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence 33333 233467887788887765332111100 000 01122211 3444554
Q ss_pred hcC-----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC-----CCCCccEEEeccc
Q 024619 135 AIG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP-----LELGADIVMHSAT 199 (265)
Q Consensus 135 ~~~-----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~-----~~~~~di~~~s~s 199 (265)
.+. .++.+|+++......|.+.+ ++++.++|++||+++|+||+|.. +..+.. .....|+ .+++
T Consensus 198 ~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~s 275 (433)
T PRK08117 198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIA 275 (433)
T ss_pred HHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCE--eehh
Confidence 432 46889999999998999877 99999999999999999999972 121211 1223565 5899
Q ss_pred cccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|.++ +|+++|+++.+++.. +.+...........++..+...+..|+
T Consensus 276 K~lg--~G~pigav~~~~~i~-~~~~~~~~~~T~~~np~~~aaa~a~L~ 321 (433)
T PRK08117 276 KGIA--SGLPLSAVVASKELM-EQWPLGSHGTTFGGNPVACAAALATLE 321 (433)
T ss_pred hhcc--CCCcceeEEEcHHHH-hhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 9995 468889988876543 322221122223345555555444444
No 292
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.47 E-value=2.8e-12 Score=114.75 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=139.1
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~ 84 (265)
.+.++++|.++ +..+|...|.+..+..-+.... .........++...++.+.+.+.... +.+.+++||++|+.
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve 115 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKL---IHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDAND 115 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhc---cCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHH
Confidence 45678888643 5669998888877755333221 11111111245677888889888754 35778889999986
Q ss_pred HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----C--CC--eEEEeecCC-----------------CHHHHHhh
Q 024619 85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----K--TG--VVVKRVNTC-----------------DLDEVASA 135 (265)
Q Consensus 85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~--~g--~~~~~~~~~-----------------d~~~l~~~ 135 (265)
+.+.+ ......|+....+|++.......... . .+ ..+.+++.+ +.+.+++.
T Consensus 116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (443)
T PRK08360 116 GAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEK 195 (443)
T ss_pred HHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHH
Confidence 33333 23346788777788776422111111 0 01 112222211 12334444
Q ss_pred cC-----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEecccc
Q 024619 136 IG-----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATK 200 (265)
Q Consensus 136 ~~-----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK 200 (265)
+. +++++|+++..+|++|.+.+ +++|.++|++||+++|+||+|.. +..+. ......|++ +++|
T Consensus 196 l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK 273 (443)
T PRK08360 196 FEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGK 273 (443)
T ss_pred HHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE--Eecc
Confidence 42 56899999988899998854 89999999999999999999862 22221 123356766 6799
Q ss_pred ccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.++ +|+++|+++++++.. +.+...........++..+...+..++
T Consensus 274 ~l~--~G~pigav~~~~~i~-~~~~~~~~~~T~~~~p~~~aaa~a~l~ 318 (443)
T PRK08360 274 PLG--GGLPISATIGRAEIM-DSLPPLAHAFTLSGNPVASAAALAVIE 318 (443)
T ss_pred ccc--CCceeEEEEEcHHHH-hhhcCCCCCCCCCcCHHHHHHHHHHHH
Confidence 995 468899998876543 333222222334445555554444443
No 293
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.45 E-value=5.5e-12 Score=109.84 Aligned_cols=150 Identities=23% Similarity=0.216 Sum_probs=94.7
Q ss_pred HHHHHHhHhCCC----c-eEEecchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC-------CCeEEEeecC
Q 024619 60 LESLLAKLDKAD----R-ALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK-------TGVVVKRVNT 126 (265)
Q Consensus 60 l~~~l~~~~g~~----~-~i~~~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~ 126 (265)
..++++++||++ . .+=.-||+.|. .++.++++|||+|+..+..+.+....- ..... ...+.+..++
T Consensus 71 a~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg-~~~~~~~~~~~~~~~~~~~y~~ 149 (399)
T PF00464_consen 71 AIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHG-SSVNFKKISASGLYFESVPYPV 149 (399)
T ss_dssp HHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT--TTSHSBSSHHHHHSEEEEEEB
T ss_pred HHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccc-ccccccccccccceEEEEeeee
Confidence 345667889988 4 55566888776 588999999999998777665443110 10011 1123444332
Q ss_pred C------CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCCCcCCCCCCccEE
Q 024619 127 C------DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPVLSRPLELGADIV 194 (265)
Q Consensus 127 ~------d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~~~~~~~~~~di~ 194 (265)
+ |.+++++.+. .++++|++.....| ...|.+++.++|++.|++|+.|.+|- .|.+++|... .|++
T Consensus 150 d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvv 226 (399)
T PF00464_consen 150 DPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVV 226 (399)
T ss_dssp -TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEE
T ss_pred ecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEE
Confidence 2 8889888876 57999988766554 45789999999999999999999995 5566788877 9999
Q ss_pred EeccccccccCCCceeeEEEee
Q 024619 195 MHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
++|.+|+|.||. +|+|.++
T Consensus 227 t~sThKtl~GPr---ggiI~~~ 245 (399)
T PF00464_consen 227 TGSTHKTLRGPR---GGIILTN 245 (399)
T ss_dssp EEESSGGG-SSS----EEEEES
T ss_pred EeeccccccccC---ceEEEEc
Confidence 999999999986 6999998
No 294
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.44 E-value=7.9e-13 Score=105.98 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=112.6
Q ss_pred ceEEecchH-HHHH-HHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcC--CCce
Q 024619 72 RALCFTSGM-AALA-AVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIG--PWTK 141 (265)
Q Consensus 72 ~~i~~~~g~-~al~-~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~--~~~~ 141 (265)
+.+++..|+ +.+. .++..+.|| ++|+.-.|+|.-|. -.+...+++++-++.. +.|++.+.+. .+++
T Consensus 87 dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK 162 (375)
T KOG0633|consen 87 DNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIK 162 (375)
T ss_pred cceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCCCCccccHHHHHHHHhccccce
Confidence 688888888 7775 677789999 78999999998774 5567889999999854 7888888876 4689
Q ss_pred EEEEecCCCCccccccHHHHHHHHHHc-CCEEEEeCCcCCCC-C----cCCCCCCccEEEeccccccccCCCceeeEEEe
Q 024619 142 LVWVESPTNPRQQICDIRKIAEMAHAH-GALLLVDNSIMSPV-L----SRPLELGADIVMHSATKFIAGHSDVMAGVLAV 215 (265)
Q Consensus 142 ~i~~~~~~np~G~~~~l~~i~~~a~~~-~~~li~D~~~~~~~-~----~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~ 215 (265)
++++++|.||||.+...+.|.++..-- |.++++||+|-... . .-...+..-+++.++||.| |..|+|.|+-..
T Consensus 163 ~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~ 241 (375)
T KOG0633|consen 163 CIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAF 241 (375)
T ss_pred EEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccc
Confidence 999999999999997666666665543 79999999984211 1 2233456679999999999 889999999987
Q ss_pred echh
Q 024619 216 KGER 219 (265)
Q Consensus 216 ~~~~ 219 (265)
+...
T Consensus 242 ~~~i 245 (375)
T KOG0633|consen 242 PLSI 245 (375)
T ss_pred cHHH
Confidence 7643
No 295
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.43 E-value=4.6e-12 Score=113.70 Aligned_cols=204 Identities=16% Similarity=0.167 Sum_probs=132.0
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al 83 (265)
.+.++++|.++ ...+|...|.+..+..-+.... . .+++. .++...++.+.+.++... +.+.+.+||++|+
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l----~-~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAv 154 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQ----P-LHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESV 154 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhC----c-ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHH
Confidence 45688898644 5669998888887765333221 1 11222 356788889999888643 4578888999998
Q ss_pred HHHHHhc---C--C-CCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCCHHHHHhhcC------CCceE
Q 024619 84 AAVTHLL---G--T-GEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCDLDEVASAIG------PWTKL 142 (265)
Q Consensus 84 ~~~~~~~---~--~-g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d~~~l~~~~~------~~~~~ 142 (265)
.+.+.+. . + ...|+....+|++............. ..+..++.+|.+++++.+. +++.+
T Consensus 155 e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAa 234 (459)
T PRK11522 155 EAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAA 234 (459)
T ss_pred HHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEE
Confidence 6333331 1 2 34688888888887533212111110 1133455567777777664 35789
Q ss_pred EEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCCceeeE
Q 024619 143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGV 212 (265)
Q Consensus 143 i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g~~~G~ 212 (265)
|+++......|.+.+ ++++.++|++||+++|+||++. .|..+. .....+|++ +++|.+++. -+..|.
T Consensus 235 vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv--t~gK~lggG-~~Piga 311 (459)
T PRK11522 235 VILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDIL--CLAKALGGG-VMPIGA 311 (459)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEE--EechhhhCC-Ccccee
Confidence 999999988898876 8999999999999999999984 332321 123357877 679999641 123566
Q ss_pred EEeechhH
Q 024619 213 LAVKGERL 220 (265)
Q Consensus 213 v~~~~~~~ 220 (265)
++.+++..
T Consensus 312 v~~~~~i~ 319 (459)
T PRK11522 312 TIATEEVF 319 (459)
T ss_pred EEEcHHHH
Confidence 66665443
No 296
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.42 E-value=1.1e-12 Score=114.41 Aligned_cols=152 Identities=22% Similarity=0.182 Sum_probs=107.4
Q ss_pred hHHHHHHHHHhHhCCC--c-eEEecc-hHHHHH-HHHHhcC---CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC
Q 024619 56 TRDALESLLAKLDKAD--R-ALCFTS-GMAALA-AVTHLLG---TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~--~-~i~~~~-g~~al~-~~~~~~~---~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (265)
..+++++.+++++|++ + ++++++ |++++. ++..++. +|+.|++ ..+...+...++..|++++.++.+
T Consensus 45 ~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-----g~~~~~~~~~a~~~g~~~~~~~~~ 119 (355)
T cd00611 45 IVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-----GAWSAKAAKEAKRYGGVVVIVAAK 119 (355)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-----CHHHHHHHHHHHhcCCCcEEEecc
Confidence 4788999999999963 3 455545 679986 6677776 4555544 222222235667888888877643
Q ss_pred ------C-HHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecccc
Q 024619 128 ------D-LDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 200 (265)
Q Consensus 128 ------d-~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK 200 (265)
+ ++..+..+.+++++|.+++..|.||...+ ++++.+|+++++|.+++.|..+...+. .++.+.|.+|
T Consensus 120 ~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~-~~~~~ss~~K 193 (355)
T cd00611 120 EEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSK-FGVIYAGAQK 193 (355)
T ss_pred cccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHH-hCEEEeeccc
Confidence 3 33333456688999999999999999832 445569999999999999998743322 3466677999
Q ss_pred ccccCCCceeeEEEeechhHH
Q 024619 201 FIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 201 ~~~g~~g~~~G~v~~~~~~~~ 221 (265)
++ ||+|+ |+++.+++.+.
T Consensus 194 ~l-GP~G~--g~l~~~~~~~~ 211 (355)
T cd00611 194 NL-GPAGV--TVVIVRKDLLG 211 (355)
T ss_pred cc-CCCce--EEEEECHHHHh
Confidence 88 79995 88888886653
No 297
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.42 E-value=8.6e-12 Score=111.29 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=143.9
Q ss_pred CcceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619 8 GVSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLDKA--DRALCFTSGMAA 82 (265)
Q Consensus 8 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a 82 (265)
..+.++++|.++ ...+|...|.+..+..-+.... . ..++. .++...++.+++.++... +.+.+++||++|
T Consensus 72 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l----~-~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA 146 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQ----P-LHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTES 146 (442)
T ss_pred CCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhC----C-CcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHH
Confidence 345788998644 5569998888887765333221 1 11222 456788899999988743 347788899999
Q ss_pred HHHHHHh---c---CCCCEEEEcCCCCCChHHHHHhhcCC------C---CeEEEeecCCCHHHHHhhcC------CCce
Q 024619 83 LAAVTHL---L---GTGEEIVAGDDLYGGTDRLLSRVTPK------T---GVVVKRVNTCDLDEVASAIG------PWTK 141 (265)
Q Consensus 83 l~~~~~~---~---~~g~~viv~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~d~~~l~~~~~------~~~~ 141 (265)
+.+.+.+ . ..+..|+....+|++........... + ...+..+|.+|.+.+++.+. .++.
T Consensus 147 ~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vA 226 (442)
T TIGR03372 147 VEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVA 226 (442)
T ss_pred HHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEE
Confidence 8633332 1 12357888888888875332121111 1 11235566678877766653 4588
Q ss_pred EEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccCCC-cee
Q 024619 142 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSD-VMA 210 (265)
Q Consensus 142 ~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~~g-~~~ 210 (265)
+|+++......|.+.+ ++++.++|++||+++|+||++. .|..+. .....+|+++ ++|.+++ | +.+
T Consensus 227 avIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg~--G~~Pi 302 (442)
T TIGR03372 227 AIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC--LAKALGG--GVMPI 302 (442)
T ss_pred EEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeee--ehhhhcC--Ccccc
Confidence 9999999988888877 8999999999999999999983 333332 1233578875 7999954 3 235
Q ss_pred eEEEeechhHHHHHHHH--HHhccCCCChhHHHHHHhccC
Q 024619 211 GVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 211 G~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|.++.+++ +.+.+... ....+..-+|..++..+..|+
T Consensus 303 gavv~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~ 341 (442)
T TIGR03372 303 GATIATEA-VFSVLFDNPFLHTTTFGGNPLACAAALATIN 341 (442)
T ss_pred eEEEecHH-HHHhhhccCccccCCCCCCHHHHHHHHHHHH
Confidence 77766654 43333111 112222335655555444444
No 298
>PLN02263 serine decarboxylase
Probab=99.42 E-value=5.7e-12 Score=111.78 Aligned_cols=159 Identities=13% Similarity=0.099 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhHhCCC----ceEEecchHHHH-HHHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 56 TRDALESLLAKLDKAD----RALCFTSGMAAL-AAVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~----~~i~~~~g~~al-~~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
.-.++-+++++++|.+ ...++++|++++ .++...- .+...+++++-+|.+.. ++++..|++++.++.+
T Consensus 134 ~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~----KAa~llgi~~~~Vp~d~ 209 (470)
T PLN02263 134 FEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDTLV 209 (470)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH----HHHHhcCCcceEeccCC
Confidence 3667788999999864 267888888776 3443331 23346778888888886 6677888888888864
Q ss_pred ----CHHHHHhhcCCC---ceEEEEecCCCCccccccHHHHHHHHHHcCC-----EEEEeCCcCCCCCc---C----CCC
Q 024619 128 ----DLDEVASAIGPW---TKLVWVESPTNPRQQICDIRKIAEMAHAHGA-----LLLVDNSIMSPVLS---R----PLE 188 (265)
Q Consensus 128 ----d~~~l~~~~~~~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~-----~li~D~~~~~~~~~---~----~~~ 188 (265)
|+++|++++.++ +.+|+.+..+.++|.+.|+++|.++|+++|+ ++++|.+|+...++ . ...
T Consensus 210 ~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~ 289 (470)
T PLN02263 210 SGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK 289 (470)
T ss_pred CCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCC
Confidence 899999888643 4566778888999999999999999999997 99999999754442 1 111
Q ss_pred CCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 189 LGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 189 ~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
..+|=+..++|||++.|-+ +|+++.++..+
T Consensus 290 ~~vDSIsvD~HK~l~~P~~--cgvll~R~~~~ 319 (470)
T PLN02263 290 KPIGSVSVSGHKFVGCPMP--CGVQITRMEHI 319 (470)
T ss_pred cCccEEEECCccccCCCcC--EEEEEEehhhH
Confidence 2378899999999988876 79998887543
No 299
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.42 E-value=8.2e-13 Score=122.08 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=118.8
Q ss_pred hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619 56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------ 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------ 127 (265)
...+.++..++.||++...++++|+ .++ .++++++.+||.|++++.+|-+.. ..+...|+++++++..
T Consensus 196 ~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----haLilsga~PVYl~P~rn~~Gi 271 (714)
T PRK15400 196 PHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLT----HLMMMSDVTPIYFRPTRNAYGI 271 (714)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeEEEecccccccCC
Confidence 4889999999999999888888886 666 478889999999999999998876 4557789999998632
Q ss_pred ---------CHHHHHhhcCC--Cce---EEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC-----CCc--CC
Q 024619 128 ---------DLDEVASAIGP--WTK---LVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP-----VLS--RP 186 (265)
Q Consensus 128 ---------d~~~l~~~~~~--~~~---~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~-----~~~--~~ 186 (265)
+.+.+++++.+ +.+ .+++++| +-.|.+.++++|++.|+.++ |++||||+.= .+. ++
T Consensus 272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sa 348 (714)
T PRK15400 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG 348 (714)
T ss_pred ccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcCh
Confidence 37888888852 333 6888888 44899999999999999887 7999998632 121 22
Q ss_pred CCCCc---c--EEEeccccccccCCCceeeEEEeech
Q 024619 187 LELGA---D--IVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 187 ~~~~~---d--i~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
...+. | +++.|.||.+.+.. +++++..+..
T Consensus 349 m~~ga~~~~~i~vtQStHKtL~alT--QaS~LHvkg~ 383 (714)
T PRK15400 349 MSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGD 383 (714)
T ss_pred hhcCCCCCCceEEEEchhhcccchh--HHhHHHHcCC
Confidence 33333 4 99999999987654 4566666543
No 300
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.40 E-value=2.5e-12 Score=111.71 Aligned_cols=152 Identities=20% Similarity=0.118 Sum_probs=114.6
Q ss_pred hHHHHHHHHHhHhCC-C--ceEEecc-hHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-----
Q 024619 56 TRDALESLLAKLDKA-D--RALCFTS-GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----- 125 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~-~--~~i~~~~-g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~----- 125 (265)
..+++++.++++++. + +++++++ |+.|+. ++..++.+|+++++...... -..|...++..|+ +..+.
T Consensus 38 ~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~f--g~r~~~~a~~~g~-~~~~~~~~~~ 114 (349)
T TIGR01364 38 VANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAW--SKKAAKEAKKYGV-VNVVASGKEG 114 (349)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHH--HHHHHHHHHHhCC-cEEEeccccC
Confidence 488899999999995 2 3666655 679996 77888889998876544432 3334678888888 55444
Q ss_pred ----CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccc
Q 024619 126 ----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201 (265)
Q Consensus 126 ----~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~ 201 (265)
..++++++ +++++++|.+++..+.||...+ ++++.+++++++|.+++.|..+...+ +.|++++|.+|+
T Consensus 115 ~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~-~~d~~~~ssqK~ 186 (349)
T TIGR01364 115 NYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVS-KFGLIYAGAQKN 186 (349)
T ss_pred CCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHH-HccEEEEecccc
Confidence 22455444 3468999999999999999876 66777899999999999998874333 256999999999
Q ss_pred cccCCCceeeEEEeechhHH
Q 024619 202 IAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~ 221 (265)
+ ||+|+ |+++.+++.+.
T Consensus 187 l-gP~Gl--g~l~~s~~~~~ 203 (349)
T TIGR01364 187 I-GPAGL--TVVIVRKDLLG 203 (349)
T ss_pred c-CCCce--EEEEECHHHHh
Confidence 9 69995 99988887654
No 301
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.40 E-value=5.3e-12 Score=108.05 Aligned_cols=156 Identities=26% Similarity=0.291 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcCCCCEEEEcC-----CCCCChHHHHHhhcCCCCeEEEeec---C
Q 024619 56 TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGD-----DLYGGTDRLLSRVTPKTGVVVKRVN---T 126 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~~g~~viv~~-----~~~~~~~~~~~~~~~~~g~~~~~~~---~ 126 (265)
....+.+..+...|++++.++++.+.|+. ++.++.+ +.+|+++. +.+++.. +.++..|.+++++. .
T Consensus 69 R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~----d~~~~aG~~l~EvG~tn~ 143 (395)
T COG1921 69 RLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAFRVP----DIIRLAGAKLVEVGTTNR 143 (395)
T ss_pred HHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCCChh----HHHHHcCCEEEEecccCc
Confidence 35577788888888999999999998876 5555555 55554432 3444454 77788999999986 4
Q ss_pred CCHHHHHhhcCCCceEEEEecCCCCcccc--ccHHHHHHHHHHcCCEEEEeCCcCCC-----CCcCCCCCCccEEEeccc
Q 024619 127 CDLDEVASAIGPWTKLVWVESPTNPRQQI--CDIRKIAEMAHAHGALLLVDNSIMSP-----VLSRPLELGADIVMHSAT 199 (265)
Q Consensus 127 ~d~~~l~~~~~~~~~~i~~~~~~np~G~~--~~l~~i~~~a~~~~~~li~D~~~~~~-----~~~~~~~~~~di~~~s~s 199 (265)
.+..+++.++.+++++++-.+.+|. |.. .+.++++++|+++|+++++|.+.+.. ........|+|++++|..
T Consensus 144 t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~Sgd 222 (395)
T COG1921 144 THLKDYELAINENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGD 222 (395)
T ss_pred CCHHHHHHHhccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecc
Confidence 4799999999999999887777664 555 46789999999999999999986543 223445679999999999
Q ss_pred cccccCCCceeeEEEeechhH
Q 024619 200 KFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~ 220 (265)
|.|+||. .|+++++++.+
T Consensus 223 KllgGPq---aGii~GkKelI 240 (395)
T COG1921 223 KLLGGPQ---AGIIVGKKELI 240 (395)
T ss_pred hhcCCCc---cceEechHHHH
Confidence 9998885 79999988766
No 302
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.39 E-value=5.2e-12 Score=116.84 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=117.6
Q ss_pred hHHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC------
Q 024619 56 TRDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------ 127 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------ 127 (265)
...+.++..++.||++...++++|+ .++ .++++++.+||.|++++.+|-+.. ..+...|+++++++..
T Consensus 196 ~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~----~aLilsga~PVYl~P~~n~~Gi 271 (713)
T PRK15399 196 PHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLA----HLLMMSDVVPIWLKPTRNALGI 271 (713)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHH----HHHHHcCCeeEEecccccccCC
Confidence 4888999999999999888888886 666 478889999999999999998876 4557789999998632
Q ss_pred ----C-----HHHHHhhcCC--C---ceEEEEecCCCCccccccHHHHHHHHHHcCCEE-EEeCCcCCCC-----Cc--C
Q 024619 128 ----D-----LDEVASAIGP--W---TKLVWVESPTNPRQQICDIRKIAEMAHAHGALL-LVDNSIMSPV-----LS--R 185 (265)
Q Consensus 128 ----d-----~~~l~~~~~~--~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~l-i~D~~~~~~~-----~~--~ 185 (265)
+ .+.+++++.+ + ++++++++| +..|.+.|+++|++.| |+.+ ++||||+.=. +. .
T Consensus 272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~s 347 (713)
T PRK15399 272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKS 347 (713)
T ss_pred cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcC
Confidence 2 3888888752 2 368888988 4489999999999999 6766 6999986211 21 2
Q ss_pred CCCC--CccEE---EeccccccccCCCceeeEEEeech
Q 024619 186 PLEL--GADIV---MHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 186 ~~~~--~~di~---~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
+... +.|.+ +.|.||.+.+.. +++++..+..
T Consensus 348 am~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~ 383 (713)
T PRK15399 348 GMSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGE 383 (713)
T ss_pred hhhCCCCCCeeeeeeeehhccccccc--hheeeeecCC
Confidence 2222 35665 999999997764 5788888664
No 303
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.39 E-value=1.2e-11 Score=110.20 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=129.9
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-C--CceEEecchHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A--DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~--~~~i~~~~g~~al 83 (265)
.+.++++|.+ ++..+|...|.+.++...+... .....+....++...++.+.+.+... . +.+.+++||++|+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~ 114 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQ---FTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAV 114 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHh---ccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHH
Confidence 4567888853 3345898887777775533322 11122222244667788888888763 2 4688889999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecCC----------CHHHHHhhcC---
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC----------DLDEVASAIG--- 137 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~~----------d~~~l~~~~~--- 137 (265)
...+.+ .....+|+....+|++.......... ..+. .+..++.+ +.+.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~ 194 (421)
T PRK09792 115 ENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDI 194 (421)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcc
Confidence 633332 22345788888888887533212111 1110 12233322 2366766653
Q ss_pred --CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccC
Q 024619 138 --PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGH 205 (265)
Q Consensus 138 --~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~ 205 (265)
+++++|+++..++++|... | +++|.++|++||+++|+||++.. +..+. ......|+ .+++|.++
T Consensus 195 ~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~-- 270 (421)
T PRK09792 195 EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLA-- 270 (421)
T ss_pred CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE--EEeehhhc--
Confidence 4688999999999999764 5 89999999999999999999762 22221 11234675 57899994
Q ss_pred CCceeeEEEeechhH
Q 024619 206 SDVMAGVLAVKGERL 220 (265)
Q Consensus 206 ~g~~~G~v~~~~~~~ 220 (265)
+|++.|+++.+++..
T Consensus 271 ~G~pigav~~~~~i~ 285 (421)
T PRK09792 271 GGMPLSGVVGNANIM 285 (421)
T ss_pred CCCceEEEEEcHHHH
Confidence 358899998876543
No 304
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.39 E-value=4.4e-12 Score=108.42 Aligned_cols=160 Identities=22% Similarity=0.267 Sum_probs=125.4
Q ss_pred CCh-hHHHHHHHHHhHhCCCce-EEecchHHH----HHHHHHhc-C----CCCEEEEcCCCCCChHHHHHhhcCCCCeEE
Q 024619 53 GNP-TRDALESLLAKLDKADRA-LCFTSGMAA----LAAVTHLL-G----TGEEIVAGDDLYGGTDRLLSRVTPKTGVVV 121 (265)
Q Consensus 53 g~~-~~~~l~~~l~~~~g~~~~-i~~~~g~~a----l~~~~~~~-~----~g~~viv~~~~~~~~~~~~~~~~~~~g~~~ 121 (265)
|.. ...+|+++|+++.|.|++ +-.++|+++ +.++.... . ..+.++|++-+|.... ..+...|.+|
T Consensus 106 G~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP----ASAam~G~~V 181 (496)
T COG1003 106 GYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP----ASAAMAGFKV 181 (496)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh----hhHhhcCceE
Confidence 554 488999999999999964 445566554 33444432 2 2457999999999887 6778899999
Q ss_pred EeecCC-----CHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCC--cCCCCCCccE
Q 024619 122 KRVNTC-----DLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADI 193 (265)
Q Consensus 122 ~~~~~~-----d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~--~~~~~~~~di 193 (265)
+.|+.+ |+++|++.+.+++.++++++|+. .|.. .++.+|+++.+++|..|..|++.--..+ ..|.+.|+|+
T Consensus 182 V~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 182 VVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred EEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 999865 89999999999999999999955 7777 4799999999999999999999765544 3688999999
Q ss_pred EEeccccccccCCCc---eeeEEEeec
Q 024619 194 VMHSATKFIAGHSDV---MAGVLAVKG 217 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~---~~G~v~~~~ 217 (265)
+-..+||+|+.|.|- -.|-|..++
T Consensus 261 ~HlNLHKTF~iPHGGGGPG~GPvgVk~ 287 (496)
T COG1003 261 VHLNLHKTFCIPHGGGGPGAGPVGVKA 287 (496)
T ss_pred EEeecccccccCCCCCCCCCCceehHh
Confidence 999999999755442 024555554
No 305
>PLN02880 tyrosine decarboxylase
Probab=99.38 E-value=2.7e-12 Score=116.00 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHhHhCCCc---------eEEecchHHHH-HHHHHh----cCC------CC-EEEEcCCCCCChHHHHHhh
Q 024619 55 PTRDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LGT------GE-EIVAGDDLYGGTDRLLSRV 113 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~---------~i~~~~g~~al-~~~~~~----~~~------g~-~viv~~~~~~~~~~~~~~~ 113 (265)
..-+++-+++++++|.++ .+++++|++++ .++... ++. .. .|++++-+|.+.. ++
T Consensus 122 ~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~----Ka 197 (490)
T PLN02880 122 ELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ----KA 197 (490)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH----HH
Confidence 346678899999998653 56777778765 333221 111 22 3556777877775 55
Q ss_pred cCCCCeE---EEeecC-------CCHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCC
Q 024619 114 TPKTGVV---VKRVNT-------CDLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177 (265)
Q Consensus 114 ~~~~g~~---~~~~~~-------~d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~ 177 (265)
+...|+. ++.++. -|+++|++++.+ .+-+|+.+.....+|.+.|+++|.++|+++|+++++|.+
T Consensus 198 a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA 277 (490)
T PLN02880 198 CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAA 277 (490)
T ss_pred HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehh
Confidence 5666663 444443 278888888852 245677777888999999999999999999999999999
Q ss_pred cCCCCCcCC------CC-CCccEEEeccccccccCCCceeeEEEeechh
Q 024619 178 IMSPVLSRP------LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 178 ~~~~~~~~~------~~-~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
|+.+....+ .. .++|.++.++|||+..|-+ +|+++.++..
T Consensus 278 ~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~--~g~llvr~~~ 324 (490)
T PLN02880 278 YAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD--CSLLWVKDRN 324 (490)
T ss_pred hHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc--EEEEEEeCHH
Confidence 997755321 12 3579999999999998877 6988888643
No 306
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.38 E-value=1.4e-11 Score=111.65 Aligned_cols=233 Identities=16% Similarity=0.151 Sum_probs=138.3
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCC-C-CChhHHHHHHHHHhHhC-C--CceEEecchHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTR-S-GNPTRDALESLLAKLDK-A--DRALCFTSGMA 81 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~-g~~~~~~l~~~l~~~~g-~--~~~i~~~~g~~ 81 (265)
.+.++|+|.+ ++.++|...|.+..+...+... ..+.... . .++...++++.|.+.+. . +.+.+++||++
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~----~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsE 162 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNK----LPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSE 162 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhh----ccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHH
Confidence 3578999974 4789997777766665433222 1111111 1 33567888899888753 3 24778899999
Q ss_pred HHHHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcC------CCCeE---EEeecCCC---------------
Q 024619 82 ALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTP------KTGVV---VKRVNTCD--------------- 128 (265)
Q Consensus 82 al~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~------~~g~~---~~~~~~~d--------------- 128 (265)
|+.+.+.+. .+ .++|+..+.+|++.......+.. .++.. +..++.++
T Consensus 163 A~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 242 (504)
T PLN02760 163 ANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFS 242 (504)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHH
Confidence 986333322 12 35788888888877532111111 11100 22222111
Q ss_pred ---HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCc
Q 024619 129 ---LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGA 191 (265)
Q Consensus 129 ---~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~ 191 (265)
.+++++.+. .++++|+++......|.+.+ +++|.++|++||+++|+||++ +.|..+. .....+
T Consensus 243 ~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~P 322 (504)
T PLN02760 243 TRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKP 322 (504)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCC
Confidence 133555442 45889999999888888877 999999999999999999998 5655542 223357
Q ss_pred cEEEeccccccccCCCceeeEEEeechhHHHHHHH-------HHHhccCCCChhHHHHHHhccCc
Q 024619 192 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 192 di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
|++ +++|.+++ +.+..|.++++++ +.+.+.. +....+..-+|..++..++.|+.
T Consensus 323 Div--tlgK~lgg-G~~PigAv~~~~~-i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~ 383 (504)
T PLN02760 323 DLV--SLAKALSS-AYMPIGAVLVSPE-ISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI 383 (504)
T ss_pred cEE--EecccccC-CccccceEeecHH-HHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH
Confidence 875 57999954 2223566767654 3343321 11122333456666665555543
No 307
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.38 E-value=3e-12 Score=114.22 Aligned_cols=154 Identities=25% Similarity=0.322 Sum_probs=124.1
Q ss_pred HHHHHHHHHhHhCCCceEEecchH-HHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-------
Q 024619 57 RDALESLLAKLDKADRALCFTSGM-AAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC------- 127 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~~~i~~~~g~-~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------- 127 (265)
..+.++..++.+|++...++.+|+ .++ .++++++.+||.|++++++|-+.... .-..|+.++++...
T Consensus 72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~g----lilaGa~Pvyl~p~~np~~gi 147 (557)
T COG1982 72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHG----LILAGATPVYLEPSRNPLYGI 147 (557)
T ss_pred HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHH----HHHcCCceEEecCCCCccccc
Confidence 889999999999999888888886 777 58899999999999999999888743 46688898887632
Q ss_pred ----CHHHHHhhcC--CCc-eEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCC-----Cc-CCCCCCccEE
Q 024619 128 ----DLDEVASAIG--PWT-KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPV-----LS-RPLELGADIV 194 (265)
Q Consensus 128 ----d~~~l~~~~~--~~~-~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~-----~~-~~~~~~~di~ 194 (265)
+.+.+.+++. +.. +++++.+|.. .|.++++++|++.+++.++++.+|++|..-. .+ +..+.+.|++
T Consensus 148 ~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~ 226 (557)
T COG1982 148 IGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFV 226 (557)
T ss_pred cCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEE
Confidence 6788888764 345 7888888855 7999999999999999999999999986322 22 2334678999
Q ss_pred EeccccccccCCCceeeEEEeec
Q 024619 195 MHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
+.|.||.+++.. ++.++..++
T Consensus 227 tqS~HK~l~alS--QaS~iHv~~ 247 (557)
T COG1982 227 TQSTHKLLAALS--QASMIHVKD 247 (557)
T ss_pred Eechhhhhhhhh--hhHHHhhCC
Confidence 999999986653 567887775
No 308
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.38 E-value=2.8e-11 Score=108.51 Aligned_cols=232 Identities=14% Similarity=0.114 Sum_probs=137.9
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al 83 (265)
.+.++++|.++ +..+|...|.+..+..-+... ..........++...++.+.+.+.... +.+.+++||++|+
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~---~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~ 116 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADK---FIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDAN 116 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHH
Confidence 45678998543 445899877777665432221 111111112456788899999998743 3566778999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCCC-----------------HHHHH
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTCD-----------------LDEVA 133 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~d-----------------~~~l~ 133 (265)
...+.+ .....+|+..+.+|++.......+... .+ ..+..++.++ +++++
T Consensus 117 e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
T PRK08593 117 DGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLK 196 (445)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHH
Confidence 633332 223456888888888875332111110 00 1122233221 13344
Q ss_pred hhc-----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCccEEEecc
Q 024619 134 SAI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADIVMHSA 198 (265)
Q Consensus 134 ~~~-----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~di~~~s~ 198 (265)
+.+ .+++++|+++...+..|.+.+ +++|.++|++||+++|+||++ +.|..+. .....+|++ ++
T Consensus 197 ~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~ 274 (445)
T PRK08593 197 EMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SF 274 (445)
T ss_pred HHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEe--ee
Confidence 333 256899999999988888765 899999999999999999998 3443321 123346766 67
Q ss_pred ccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+|.+++ |+.+|+++++++.+ +.+.......+...++..++..+..|+
T Consensus 275 gK~l~~--G~p~gav~~~~~i~-~~~~~~~~~~T~~~~pl~~aaa~a~l~ 321 (445)
T PRK08593 275 GKSLAG--GMPMSAIVGRKEIM-ESLEAPAHLFTTGANPVSCAAALATID 321 (445)
T ss_pred cccccC--CcccEEEEEcHHHH-hhhccCCCCCCCCCCHHHHHHHHHHHH
Confidence 999953 46789988876543 333211222344455655554444443
No 309
>PRK07046 aminotransferase; Validated
Probab=99.38 E-value=2.6e-11 Score=108.80 Aligned_cols=201 Identities=17% Similarity=0.109 Sum_probs=134.8
Q ss_pred ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCCceEEecchHHHHH-HH
Q 024619 10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AV 86 (265)
Q Consensus 10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~ 86 (265)
+.++|+|.++ ...+|...|.+..+..-+... .. .+ ...++...++.+.+.+..+.+.+.+.+||++|.. ++
T Consensus 74 G~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~----~~-~~-~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~Al 147 (453)
T PRK07046 74 GHRYDDFCLGDTGAMFGHSPAPVARALAEQARR----GL-TT-MLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVL 147 (453)
T ss_pred CCEEEEecccccccccCCCCHHHHHHHHHHHHh----CC-CC-CCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
Confidence 4678888532 344888888877776533221 11 11 1134567778888888888778999999998875 43
Q ss_pred HHh--cCCCCEEEEcCCCCCChHHHHHhhc---------CCCCe------EEEeecCCCHHHHHhhcC-CCceEEEEecC
Q 024619 87 THL--LGTGEEIVAGDDLYGGTDRLLSRVT---------PKTGV------VVKRVNTCDLDEVASAIG-PWTKLVWVESP 148 (265)
Q Consensus 87 ~~~--~~~g~~viv~~~~~~~~~~~~~~~~---------~~~g~------~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~ 148 (265)
... ....++|+....+|++......... ...|. .+..++..|++.+++.+. .++.+|+++..
T Consensus 148 rlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi 227 (453)
T PRK07046 148 RWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPA 227 (453)
T ss_pred HHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCC
Confidence 322 3345778888888988742211110 00111 234455668999998885 56889999998
Q ss_pred CCCcccccc----HHHHHHHHHHcCCEEEEeCCcC----CCCCcCCCCCCccEEEeccccccccCCCceeeEEEeechhH
Q 024619 149 TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM----SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 149 ~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~----~~~~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
....|.+.+ ++++.++|++||+++|+||++. .|-........+|+++ ++|.++| |+.+|.++++++.+
T Consensus 228 ~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t--~gK~lgg--G~Pi~av~g~~~i~ 303 (453)
T PRK07046 228 MTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLV--VGKPIAG--GVPCAVYGFSAELA 303 (453)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCcccee--ehhhhcC--CCcceeeeehHHHH
Confidence 877787754 7999999999999999999984 3322222344678885 7999964 47788888877544
No 310
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.37 E-value=2.7e-11 Score=108.10 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=128.2
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++++|.++ +..+|...|.+..+..-+... .....+....++...++.+.+.+... .+.+.+.+||++|+.
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e 116 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDR---LDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVE 116 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhh---CCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence 45678888643 556898887777665422221 11111111234567788899988874 456888899999986
Q ss_pred HHHHhc---------CCCCEEEEcCCCCCChHHHHHhhcCC-----------CCeEEEeecCCC-----HHHHHhhcC--
Q 024619 85 AVTHLL---------GTGEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVNTCD-----LDEVASAIG-- 137 (265)
Q Consensus 85 ~~~~~~---------~~g~~viv~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~d-----~~~l~~~~~-- 137 (265)
....+. ....+|+....+|++....+..+... .+...+..+..| .+++++.+.
T Consensus 117 ~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~ 196 (423)
T PRK05964 117 VALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence 333321 12367888888898875443222111 112222233334 677777773
Q ss_pred -CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccccccC
Q 024619 138 -PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGH 205 (265)
Q Consensus 138 -~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~~g~ 205 (265)
+++++|+++. .+...|...+ +++|.++|++||+++|+||+|. .|..+. .....+|++ +++|++++
T Consensus 197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~g- 273 (423)
T PRK05964 197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIM--CLSKGLTG- 273 (423)
T ss_pred CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCee--eeehhhhc-
Confidence 4678899987 5777777653 8999999999999999999984 332221 123356775 56899953
Q ss_pred CCceeeEEEeechh
Q 024619 206 SDVMAGVLAVKGER 219 (265)
Q Consensus 206 ~g~~~G~v~~~~~~ 219 (265)
+.+..|+++.+++.
T Consensus 274 G~~p~~av~~~~~i 287 (423)
T PRK05964 274 GYLPLAATLCTAEI 287 (423)
T ss_pred CcccceEEEEcHHH
Confidence 33567887776543
No 311
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.37 E-value=6.5e-12 Score=112.06 Aligned_cols=158 Identities=23% Similarity=0.254 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhHhCCC---ceEEecchHHHHH-HHHHh---cC------CC----C-EEEEcCCCCCChHHHHHhhcCCC
Q 024619 56 TRDALESLLAKLDKAD---RALCFTSGMAALA-AVTHL---LG------TG----E-EIVAGDDLYGGTDRLLSRVTPKT 117 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~~i~~~~g~~al~-~~~~~---~~------~g----~-~viv~~~~~~~~~~~~~~~~~~~ 117 (265)
.-+++..+++++++.+ ...++++|++|+. ++++. .. .+ . .|+++.-.|.++. +.+...
T Consensus 102 ~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~----Kaa~~l 177 (460)
T COG0076 102 LEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFE----KAARYL 177 (460)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHH----HHHHHh
Confidence 3667778888888874 4778888887753 44332 10 11 1 5888888888886 666777
Q ss_pred CeEEEeecCC------CHHHHHhhcCCCceE--EEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc--CC-
Q 024619 118 GVVVKRVNTC------DLDEVASAIGPWTKL--VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS--RP- 186 (265)
Q Consensus 118 g~~~~~~~~~------d~~~l~~~~~~~~~~--i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~--~~- 186 (265)
|+++..++.. |++++++++.+++.. |+......++|.+.|+++|.++|+++++++++|.+++....+ .+
T Consensus 178 G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 178 GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 8777777643 799999999877766 888888899999999999999999999999999999865542 11
Q ss_pred -----CCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 187 -----LELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 187 -----~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
...++|-++.++|||+..|.| +|+++.++++
T Consensus 258 ~~~~f~l~~vdSIt~d~HK~g~aP~~--~G~il~rd~e 293 (460)
T COG0076 258 GRWDFGLEGVDSITVDGHKYGLAPIG--CGVVLFRDEE 293 (460)
T ss_pred chhhcCCCCceEEEECcccccCCCCC--ceEEEEECHH
Confidence 122578899999999999988 6999899884
No 312
>PRK06541 hypothetical protein; Provisional
Probab=99.37 E-value=2.1e-11 Score=109.64 Aligned_cols=232 Identities=18% Similarity=0.126 Sum_probs=139.3
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA--DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al 83 (265)
.+.++|+|.+ ++..+|...|.+.++..-+... ..+... ...++...++.+++.+.... +.+.+++||++|+
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~----~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAv 125 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGT----LAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAV 125 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhh----CcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHH
Confidence 4567888863 2456999888888776533322 111111 12446677888888887643 4688888999998
Q ss_pred HHHHHh---c---C---CCCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC----------C-------
Q 024619 84 AAVTHL---L---G---TGEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC----------D------- 128 (265)
Q Consensus 84 ~~~~~~---~---~---~g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~----------d------- 128 (265)
...+.+ . . ...+|+....+|++............ + ..+..++.+ +
T Consensus 126 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (460)
T PRK06541 126 ESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRW 205 (460)
T ss_pred HHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHH
Confidence 533322 1 1 24678888888887754321111100 0 011222211 1
Q ss_pred -HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCC-----CCCCccE
Q 024619 129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADI 193 (265)
Q Consensus 129 -~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~-----~~~~~di 193 (265)
++.+++.+. .++.+|+++..+++.|.+.+ +++|.++|++||+++|+||+| +.|..+.. .....|+
T Consensus 206 ~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDi 285 (460)
T PRK06541 206 AADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDI 285 (460)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCE
Confidence 245666553 45778899988999999877 999999999999999999999 55544422 2335787
Q ss_pred EEeccccccccCCCc-eeeEEEeechhHHHHHHHH---HHhccCCCChhHHHHHHhccC
Q 024619 194 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+ +++|.+++ |+ ..|.++.+++......... ........+|..++..++.++
T Consensus 286 v--t~gK~l~~--G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~ 340 (460)
T PRK06541 286 I--TCAKGITS--GYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLD 340 (460)
T ss_pred E--EecccccC--CccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 7 48999953 33 5777777775543322110 111233445566555544444
No 313
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.37 E-value=1e-11 Score=110.67 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=138.8
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-C--CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-A--DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~--~~~i~~~~g~~al 83 (265)
.+.++++|.++ +..+|...|.+..+..-+..+ .....+....++...++.+.+.+... . +.+.+.+||++|+
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~ 107 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAE---FTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAV 107 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHh---ccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHH
Confidence 35678888543 455888888877775433222 11222222344567788888888763 2 4688889999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecCC----------------CHHHHHh
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC----------------DLDEVAS 134 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~~----------------d~~~l~~ 134 (265)
.+.+.+ .....+|+....+|++.......+.. ..+. .+..++.+ +++.+++
T Consensus 108 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (420)
T TIGR00700 108 ENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARA 187 (420)
T ss_pred HHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHH
Confidence 633332 23346688888888887543222111 1111 11222221 1345555
Q ss_pred hc-----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc-----CCCCCCccEEEeccc
Q 024619 135 AI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS-----RPLELGADIVMHSAT 199 (265)
Q Consensus 135 ~~-----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~-----~~~~~~~di~~~s~s 199 (265)
.+ .+++.+|+++.....+|.+.+ +++|.++|++||+++|+||+|.. +..+ .......|++ +++
T Consensus 188 ~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~--~ls 265 (420)
T TIGR00700 188 IFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI--TTA 265 (420)
T ss_pred HHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE--Eee
Confidence 44 256889999998888888765 89999999999999999999863 2222 1223346765 589
Q ss_pred cccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHh
Q 024619 200 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 245 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (265)
|.++ +|+++|+++.+++.+ +.............++..++..+.
T Consensus 266 K~l~--~G~pig~v~~~~~i~-~~~~~~~~~~T~~~~pl~~aaa~a 308 (420)
T TIGR00700 266 KSLA--DGLPLSGVTGRAEIM-DAPAPGGLGGTYAGNPLACAAALA 308 (420)
T ss_pred cccc--CCcceEEEEecHHHH-hhcCCCCcCCCCCcCHHHHHHHHH
Confidence 9994 469999999876543 322211222333445555555433
No 314
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.37 E-value=2.1e-11 Score=109.17 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=127.0
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++++|.+ ++..+|...|.+.++...+......... + ...++...++.+++.++.. .+.+.+.+||++|+.
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~--~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e 120 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA--F-QMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVD 120 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc--C-CcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHH
Confidence 3467888853 2345888888888776533322110011 1 1135667788888988863 456888899999986
Q ss_pred HHHHh---c-----CC-CCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC------------------C
Q 024619 85 AVTHL---L-----GT-GEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC------------------D 128 (265)
Q Consensus 85 ~~~~~---~-----~~-g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~------------------d 128 (265)
..+.+ . .+ ..+|+....+|++.......+... ++ ..+..++.. .
T Consensus 121 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (442)
T PRK13360 121 TALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAEL 200 (442)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHH
Confidence 33322 1 12 357888888888864321111100 01 112222221 1
Q ss_pred HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCC-----CCCCccEE
Q 024619 129 LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIV 194 (265)
Q Consensus 129 ~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~-----~~~~~di~ 194 (265)
.+++++.+. +++.+|+++..+...|.+.+ +++|.++|++||+++|+||++ +.|..+.. ....+|++
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv 280 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL 280 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee
Confidence 345666653 46889999999988899877 999999999999999999998 55544322 23356876
Q ss_pred EeccccccccCCCceeeEEEeechh
Q 024619 195 MHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+++|.+++ +.+..|.++++++.
T Consensus 281 --t~gK~l~g-G~~P~gav~~~~~i 302 (442)
T PRK13360 281 --TCAKGLTN-GAIPMGAVFVSSEI 302 (442)
T ss_pred --eeeecccc-CccceEEEEEcHHH
Confidence 67999954 22345667666643
No 315
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.37 E-value=2.7e-11 Score=107.66 Aligned_cols=204 Identities=15% Similarity=0.138 Sum_probs=129.6
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHh--C--CC-ceEEe-cc
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD--K--AD-RALCF-TS 78 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~--g--~~-~~i~~-~~ 78 (265)
..+.++|+|.+ ++..+|..+|.+..+..-+... ..+..+.. .++...++.+++.+.. + .. .+.++ +|
T Consensus 32 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~----~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~s 107 (412)
T TIGR02407 32 EDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLAD----DGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPT 107 (412)
T ss_pred CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh----ccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCC
Confidence 34578899854 3445899988888775432221 11111111 3456778888888763 2 22 34454 79
Q ss_pred hHHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC------CCC---eEEEeecCC--------CHHHHHhhcC-
Q 024619 79 GMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP------KTG---VVVKRVNTC--------DLDEVASAIG- 137 (265)
Q Consensus 79 g~~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~------~~g---~~~~~~~~~--------d~~~l~~~~~- 137 (265)
|++|+...+.+ ...+.+|+....+|++.......... ..+ ..+..+|.+ +++.+++.+.
T Consensus 108 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~ 187 (412)
T TIGR02407 108 GTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLED 187 (412)
T ss_pred chHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHh
Confidence 99998643333 23346788888888887644322211 111 122334432 3566776664
Q ss_pred -----CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEecccccc
Q 024619 138 -----PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFI 202 (265)
Q Consensus 138 -----~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~ 202 (265)
+++++|+++...+..|.+. | +++|.++|++||+++|+||++. .|..+ ......+|+++ ++|++
T Consensus 188 ~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~l 265 (412)
T TIGR02407 188 SSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSI 265 (412)
T ss_pred ccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhc
Confidence 3578999999999888863 2 7999999999999999999985 33222 22344678774 68998
Q ss_pred ccCCCceeeEEEeech
Q 024619 203 AGHSDVMAGVLAVKGE 218 (265)
Q Consensus 203 ~g~~g~~~G~v~~~~~ 218 (265)
++.|++.|+++.+++
T Consensus 266 -g~~G~pigav~~~~~ 280 (412)
T TIGR02407 266 -SGYGLPLALTLIKPE 280 (412)
T ss_pred -cCCccceeEEEEchh
Confidence 554688999998765
No 316
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.36 E-value=2.1e-11 Score=108.71 Aligned_cols=232 Identities=12% Similarity=0.109 Sum_probs=139.9
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al 83 (265)
.+.++++|.++ +..+|...|.+..+..-+..+ .....+....++...++.+.+.++.. .+.+.+++||++|+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~ 114 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQ---FTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAV 114 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhh---cccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHH
Confidence 45678888632 345888888777665433222 11122222244667788888888764 35688899999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-----CCe-----EEEeecCC----------CHHHHHhhcC---
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-----TGV-----VVKRVNTC----------DLDEVASAIG--- 137 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-----~g~-----~~~~~~~~----------d~~~l~~~~~--- 137 (265)
...+.+ .....+|+....+|++.......+... .+. .+..++.+ +++.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~ 194 (421)
T PRK06777 115 ENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI 194 (421)
T ss_pred HHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc
Confidence 633332 233467888888888876443221110 000 01122211 2455666553
Q ss_pred --CCceEEEEecCCCCcccc-cc---HHHHHHHHHHcCCEEEEeCCcCC-CCCcC-----CCCCCccEEEeccccccccC
Q 024619 138 --PWTKLVWVESPTNPRQQI-CD---IRKIAEMAHAHGALLLVDNSIMS-PVLSR-----PLELGADIVMHSATKFIAGH 205 (265)
Q Consensus 138 --~~~~~i~~~~~~np~G~~-~~---l~~i~~~a~~~~~~li~D~~~~~-~~~~~-----~~~~~~di~~~s~sK~~~g~ 205 (265)
+++++|+++...+..|.. .+ +++|.++|++||+++|+||+|.. +..+. ......|++ +++|.++
T Consensus 195 ~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~-- 270 (421)
T PRK06777 195 APDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLG-- 270 (421)
T ss_pred CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEE--eeehhhc--
Confidence 468899999998888864 44 89999999999999999999862 22221 112246765 6899994
Q ss_pred CCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 206 ~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+|+++|+++.+++.+ +.+...........++..+...+..|+
T Consensus 271 ~G~pigav~~~~~i~-~~~~~~~~~~T~~~~p~~~aaa~a~L~ 312 (421)
T PRK06777 271 GGMPISAVVGRAEVM-DAPAPGGLGGTYAGNPLAVAAALAVLD 312 (421)
T ss_pred CCCceEEEEEcHHHH-hccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 568999998876433 322222222333445665555444443
No 317
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.35 E-value=6.2e-12 Score=109.74 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHhHhCC-C--ceEEec-chHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--
Q 024619 55 PTRDALESLLAKLDKA-D--RALCFT-SGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~-~--~~i~~~-~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 127 (265)
...+++++.++++++. + ++++++ +|+.++. ++..++.+|+++++..... +-..|...+++.|.. ..+..+
T Consensus 48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~--fg~r~~~~a~~~g~~-~~~~~~~~ 124 (360)
T PRK05355 48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGS--WSKKAIKEAKKYGEV-NVAASSED 124 (360)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCH--HHHHHHHHHHHhCCc-eEEecccc
Confidence 3588999999999996 3 355554 4457886 7788999998877654433 233345777888865 333221
Q ss_pred ----CHHHHHh-hcCCCceEEEEecCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccc
Q 024619 128 ----DLDEVAS-AIGPWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201 (265)
Q Consensus 128 ----d~~~l~~-~~~~~~~~i~~~~~~np~G~~~-~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~ 201 (265)
+..++++ ++++++++|.+++..+.||.+. |+++| +|+++++|.+++.|..+...+ +.|++++|.+|+
T Consensus 125 ~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~-~~d~~~~ssqK~ 197 (360)
T PRK05355 125 DGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVS-KFGLIYAGAQKN 197 (360)
T ss_pred cCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHH-HccEEEEecccc
Confidence 2233434 6777899999999999999998 77766 899999999999998864433 246999999999
Q ss_pred cccCCCceeeEEEeechhHHH
Q 024619 202 IAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~ 222 (265)
+ ||+|+ |+++.+++.+..
T Consensus 198 l-gP~Gl--g~l~~s~~~l~~ 215 (360)
T PRK05355 198 I-GPAGL--TIVIVREDLLGR 215 (360)
T ss_pred c-cCCce--EEEEECHHHHhh
Confidence 9 69995 999888876533
No 318
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.33 E-value=5e-12 Score=106.57 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=119.5
Q ss_pred ccCCC-CChh-HHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHh-c-CCCCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619 48 DYTRS-GNPT-RDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL-L-GTGEEIVAGDDLYGGTDRLLSRVTPKTGV 119 (265)
Q Consensus 48 ~y~~~-g~~~-~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~-~-~~g~~viv~~~~~~~~~~~~~~~~~~~g~ 119 (265)
.|+.+ |-+. |+.+++.+.++-|.. +.|++|+|+ .|+..++.+ + .+++-|+++-|-||-|... ....|.
T Consensus 108 aYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAt----i~l~~~ 183 (475)
T KOG0258|consen 108 AYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSAT----ISLLGG 183 (475)
T ss_pred ccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHH----HHHhCC
Confidence 47777 8875 999999999998842 567777775 888755554 3 4568899999999988633 233444
Q ss_pred EEEeecC-------CCHHHHHhhcC-----CCceEEEEecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCc
Q 024619 120 VVKRVNT-------CDLDEVASAIG-----PWTKLVWVESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLS 184 (265)
Q Consensus 120 ~~~~~~~-------~d~~~l~~~~~-----~~~~~i~~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~ 184 (265)
..+..-+ .|.+++++.+. -+++++++-+|.||||.+. .+++|+..|++++++++-||+|-.-.+.
T Consensus 184 ~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~ 263 (475)
T KOG0258|consen 184 TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYT 263 (475)
T ss_pred cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccC
Confidence 4433322 27777777664 2578999999999999994 5899999999999999999998533322
Q ss_pred ----------------CCCCCC-ccEEEeccccccccCCCceeeEEEee
Q 024619 185 ----------------RPLELG-ADIVMHSATKFIAGHSDVMAGVLAVK 216 (265)
Q Consensus 185 ----------------~~~~~~-~di~~~s~sK~~~g~~g~~~G~v~~~ 216 (265)
.+.... .-+.+.|.||.+.|-.|-|+|++=.-
T Consensus 264 ~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~ 312 (475)
T KOG0258|consen 264 TGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESL 312 (475)
T ss_pred CCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecc
Confidence 111111 23677889999889999999987543
No 319
>PLN02590 probable tyrosine decarboxylase
Probab=99.33 E-value=1.4e-11 Score=111.88 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhHhCCCc---------eEEecchHHHH-HHHHHh----cC-------CCCEEEEcCCCCCChHHHHHhhc
Q 024619 56 TRDALESLLAKLDKADR---------ALCFTSGMAAL-AAVTHL----LG-------TGEEIVAGDDLYGGTDRLLSRVT 114 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~---------~i~~~~g~~al-~~~~~~----~~-------~g~~viv~~~~~~~~~~~~~~~~ 114 (265)
.-+++-+++++++|.++ .+++++|++|. .++... .+ +.-.|.+++.+|.+.. +.+
T Consensus 171 lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~----KAa 246 (539)
T PLN02590 171 LEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR----KAC 246 (539)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH----HHH
Confidence 46677889999998653 57777888765 333321 11 1123456777887765 555
Q ss_pred CCCCe---EEEeecCC-------CHHHHHhhcCC------CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619 115 PKTGV---VVKRVNTC-------DLDEVASAIGP------WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178 (265)
Q Consensus 115 ~~~g~---~~~~~~~~-------d~~~l~~~~~~------~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~ 178 (265)
+..|+ .++.++.+ |+++|++++.+ .+-+|+.+.....+|.+.|+++|.++|++||+++++|.+|
T Consensus 247 ~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~ 326 (539)
T PLN02590 247 LIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAY 326 (539)
T ss_pred HHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecch
Confidence 66665 35555543 78999988853 2556777878888999999999999999999999999999
Q ss_pred CCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 179 MSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 179 ~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+......+. -..+|-+..++|||+..|-+ +|++++++..
T Consensus 327 GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~--cg~llvr~~~ 372 (539)
T PLN02590 327 AGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT--CSPLWVKDRY 372 (539)
T ss_pred hhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC--EEEEEecCHH
Confidence 876543221 12368999999999988866 7988888753
No 320
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.33 E-value=4.8e-11 Score=107.34 Aligned_cols=200 Identities=16% Similarity=0.172 Sum_probs=130.4
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAA 85 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~~ 85 (265)
.+.++|+|.++ ...+|...|++.++..-+... .. .+. ..++...++.+.+.+.. +.+.+.+.+||++|...
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~---~~--~~~-~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~ 170 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKK---GT--SFG-APCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMG 170 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhh---CC--CCC-CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHH
Confidence 35678888543 345898888888776533322 11 121 13355677888888776 45678889999999863
Q ss_pred HHHh---cCCCCEEEEcCCCCCChHHHHHhh----------cCCCCe------EEEeecCCCHHHHHhhcC---CCceEE
Q 024619 86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRV----------TPKTGV------VVKRVNTCDLDEVASAIG---PWTKLV 143 (265)
Q Consensus 86 ~~~~---~~~g~~viv~~~~~~~~~~~~~~~----------~~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i 143 (265)
.+.+ ....++|+....+|++....+... ....|. .+..++..|++++++.+. .++++|
T Consensus 171 AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAav 250 (474)
T PLN02482 171 VLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAV 250 (474)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEE
Confidence 3333 333467888888898864221000 001111 234455568888887774 468899
Q ss_pred EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCCCccEEEeccccccccCCCceeeEE
Q 024619 144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKFIAGHSDVMAGVL 213 (265)
Q Consensus 144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~~~di~~~s~sK~~~g~~g~~~G~v 213 (265)
+++......|.+.| +++|.++|++||+++|+||++. |... ......+|++ +++|.+++ |+..|.+
T Consensus 251 I~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~--t~gK~lgg--G~Pigav 325 (474)
T PLN02482 251 ILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLT--TLGKVIGG--GLPVGAY 325 (474)
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEE--EecchhhC--CCceEEE
Confidence 99999888898865 6799999999999999999984 3321 1123357875 67999953 4667877
Q ss_pred Eeechh
Q 024619 214 AVKGER 219 (265)
Q Consensus 214 ~~~~~~ 219 (265)
.++++.
T Consensus 326 ~g~~ei 331 (474)
T PLN02482 326 GGRREI 331 (474)
T ss_pred EEcHHH
Confidence 776543
No 321
>PRK12403 putative aminotransferase; Provisional
Probab=99.32 E-value=7.8e-11 Score=106.00 Aligned_cols=235 Identities=14% Similarity=0.074 Sum_probs=133.8
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++|+|.+ ++..+|...|.+..+..-+.... .... .+....++...+++++++++++ .+.+++++||++|+.
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~-~~~~-~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e 129 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQL-PYYN-MFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANE 129 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhC-CCee-cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHH
Confidence 3467888753 23459997766666654332221 1000 0101134668899999999986 357889999999986
Q ss_pred -HHHHhc-------CCCCE-EEEcCCCCCChHHHHHhhcCCC-----C---eEEEeecCC-------C----------HH
Q 024619 85 -AVTHLL-------GTGEE-IVAGDDLYGGTDRLLSRVTPKT-----G---VVVKRVNTC-------D----------LD 130 (265)
Q Consensus 85 -~~~~~~-------~~g~~-viv~~~~~~~~~~~~~~~~~~~-----g---~~~~~~~~~-------d----------~~ 130 (265)
++.... ++++. |+....+|++.....-...... + -.+..++.+ + .+
T Consensus 130 ~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 209 (460)
T PRK12403 130 VLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAAL 209 (460)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHH
Confidence 443321 23333 4455557776643211111100 0 012222211 0 23
Q ss_pred HHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEe
Q 024619 131 EVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMH 196 (265)
Q Consensus 131 ~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~ 196 (265)
++++.+ .+++++|+++......|.+.+ +++|.++|++||+++|+||++. .|..+ ......+||++
T Consensus 210 ~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~- 288 (460)
T PRK12403 210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS- 288 (460)
T ss_pred HHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE-
Confidence 444444 246789999999888888876 9999999999999999999984 33333 12234578886
Q ss_pred ccccccccCCCceeeEEEeechhHHHHHHH----HHHhccCCCChhHHHHHHhccCc
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
++|.+++. -+..|.++++++ +.+.+.. +....+...+|..++..++.|+.
T Consensus 289 -~gK~lggG-~~Piga~v~~~~-i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~ 342 (460)
T PRK12403 289 -IAKGLTSG-YVPMGGLVLSKR-IAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA 342 (460)
T ss_pred -Eccccccc-ccceEEEEECHH-HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence 79999642 123566666654 4343321 11122334556666665555543
No 322
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.31 E-value=5e-11 Score=106.42 Aligned_cols=203 Identities=18% Similarity=0.135 Sum_probs=127.5
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHh----CCC-ceEEe-cch
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD----KAD-RALCF-TSG 79 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~----g~~-~~i~~-~~g 79 (265)
.+.++++|.++ +..+|...|.+..+..-+.... .+..... .++...++.+++.+.. +.+ .+.++ +||
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~----~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sG 112 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRD----GITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTG 112 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhc----ccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCH
Confidence 45788998543 3458998888877764322211 1111111 3456778888888764 223 24454 699
Q ss_pred HHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC------CCCe---EEEeecC--------CCHHHHHhhcC--
Q 024619 80 MAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNT--------CDLDEVASAIG-- 137 (265)
Q Consensus 80 ~~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~------~~g~---~~~~~~~--------~d~~~l~~~~~-- 137 (265)
++|+...+.+ .....+|+....+|++.......... ..+. .+..+|. .|++++++.+.
T Consensus 113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~ 192 (425)
T PRK09264 113 TNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDS 192 (425)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhc
Confidence 9998633333 23346788888888887533212111 1111 2333443 25667777663
Q ss_pred ----CCceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccc
Q 024619 138 ----PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIA 203 (265)
Q Consensus 138 ----~~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~ 203 (265)
+++.+|+++......|.+. .+++|.++|++||+++|+||+|. .|..+ .......|++ +++|.+
T Consensus 193 ~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l- 269 (425)
T PRK09264 193 SSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIV--TLSKSI- 269 (425)
T ss_pred cCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEE--Eecccc-
Confidence 2578999999988778653 48999999999999999999985 22221 1223457876 568999
Q ss_pred cCCCceeeEEEeech
Q 024619 204 GHSDVMAGVLAVKGE 218 (265)
Q Consensus 204 g~~g~~~G~v~~~~~ 218 (265)
++.|+++|+++.+++
T Consensus 270 ~~~G~pigav~~~~~ 284 (425)
T PRK09264 270 SGYGLPMALVLIKPE 284 (425)
T ss_pred CCCccceEEEEEchh
Confidence 555788999988765
No 323
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.31 E-value=4.6e-11 Score=105.07 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=143.1
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHH
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAA 82 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~a 82 (265)
-.+.++|+|.+ ..-.+|...|.++.+..-+... .....+.|..+ +...++.++|.+.... +.+.+.+||++|
T Consensus 53 vdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~-~~h~~~~~~~~--e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA 129 (447)
T COG0160 53 VDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAK-LNHTHTRDLYY--EPYVELAEKLTALAPGSGLKKVFFGNSGAEA 129 (447)
T ss_pred CCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHH-hhcccCCcccc--hhHHHHHHHHHHhCCcccCCeEEecCCcHHH
Confidence 34578899974 2334888887777776533322 11112222222 4567777777776543 468899999999
Q ss_pred HHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC----------CeEEEeecCC-----------------CHHHH
Q 024619 83 LAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT----------GVVVKRVNTC-----------------DLDEV 132 (265)
Q Consensus 83 l~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~-----------------d~~~l 132 (265)
+.....+ ...+..|+....+|++.....-.+.... ...+..+|.+ ..+.+
T Consensus 130 ~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~ 209 (447)
T COG0160 130 VEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYI 209 (447)
T ss_pred HHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHH
Confidence 9644333 3345678888888877654421221111 1113344422 12233
Q ss_pred HhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEe
Q 024619 133 ASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMH 196 (265)
Q Consensus 133 ~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~ 196 (265)
+..+. .++++++++..+.-.|.+.+ ++++.++|++||+++|.||++. .|..+ ......+||++
T Consensus 210 e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt- 288 (447)
T COG0160 210 ERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT- 288 (447)
T ss_pred HHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE-
Confidence 33221 36889999999998998854 7999999999999999999985 23332 22233589985
Q ss_pred ccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++|.+++ |+..|.++.+.+... +..........-+|..++..+..|+
T Consensus 289 -~aK~ig~--G~Pl~avv~r~ei~~--~~~g~~~~Tf~GNpva~Aaa~AvL~ 335 (447)
T COG0160 289 -LAKSLGG--GLPLSAVVGRAEIMD--WPPGGHGGTFGGNPVACAAALAVLD 335 (447)
T ss_pred -ecccccC--CCceeEEeccHHhcc--cCCcccCCCCCcCHHHHHHHHHHHH
Confidence 6999965 788999988876543 3343344445555666655544444
No 324
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.31 E-value=5.8e-11 Score=106.77 Aligned_cols=226 Identities=14% Similarity=0.125 Sum_probs=131.9
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al 83 (265)
.+.++|+|.++ +-.+|...|.+..+..-+.... .........++...++.+.+.++... +.+.+++||++|.
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~ 128 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQY---IHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAV 128 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhc---cCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHH
Confidence 45678888543 3458888877777654332221 11111111346678888999888742 3578888999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCCC-----------------HHHHH
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTCD-----------------LDEVA 133 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~d-----------------~~~l~ 133 (265)
.+.+.+ .....+|+....+|++........... ++ ..+..++.++ .+.++
T Consensus 129 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (451)
T PRK06918 129 ENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFK 208 (451)
T ss_pred HHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHH
Confidence 633332 233467888888888876432221110 00 0122222110 11233
Q ss_pred hhc----C-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCcCC---C--CCCccEEEecc
Q 024619 134 SAI----G-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLSRP---L--ELGADIVMHSA 198 (265)
Q Consensus 134 ~~~----~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~~~---~--~~~~di~~~s~ 198 (265)
+.+ . +++.+|+++..+.-.|.+.+ +++|.++|++||+++|+||+|.. +..+.. . ....|++ |+
T Consensus 209 ~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~ 286 (451)
T PRK06918 209 NFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TV 286 (451)
T ss_pred HHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEE--ee
Confidence 222 2 46888999887665576542 89999999999999999999852 222211 1 2236744 79
Q ss_pred ccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
+|.++ +|++.|+++.+++.+ +.+...........++..+..
T Consensus 287 sK~l~--~G~pig~v~~~~~i~-~~~~~~~~~~T~~g~~l~~aa 327 (451)
T PRK06918 287 SKSLG--AGVPISGVIGRKEIM-DESAPGELGGTYAGSPLGCAA 327 (451)
T ss_pred ehhhc--CCCccEEEEEcHHHH-hccCCCCcCcCCCcCHHHHHH
Confidence 99994 469999999876543 322222222334445555444
No 325
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.31 E-value=9.8e-11 Score=104.60 Aligned_cols=229 Identities=16% Similarity=0.167 Sum_probs=144.0
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CCCceEEecchHHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KADRALCFTSGMAALAA 85 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~~~~i~~~~g~~al~~ 85 (265)
.+.++|+|.+ ++..+|...|.+..+..-+... ... + ...++...++.+.+.+.. +.+.+.+++||++|+..
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~----~~~-~-~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~ 124 (428)
T PRK12389 51 DGNKYIDYLAAYGPIITGHAHPHITKAITEAAEN----GVL-Y-GTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMT 124 (428)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHh----CCc-c-CCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH
Confidence 3567888853 3445888888887776433221 111 1 124466778888888776 34568888999999864
Q ss_pred HHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----------CC------eEEEeecCCCHHHHHhhcC---CCceEE
Q 024619 86 VTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TG------VVVKRVNTCDLDEVASAIG---PWTKLV 143 (265)
Q Consensus 86 ~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g------~~~~~~~~~d~~~l~~~~~---~~~~~i 143 (265)
.+.+ .....+|+....+|++........... .+ ..+..++..|++.+++.+. .++.+|
T Consensus 125 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaav 204 (428)
T PRK12389 125 TIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAV 204 (428)
T ss_pred HHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEE
Confidence 3333 233467888888888865332111110 01 1334455668888887774 468899
Q ss_pred EEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCCCc-----CCCCCCccEEEeccccccccCCCceeeEEE
Q 024619 144 WVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLA 214 (265)
Q Consensus 144 ~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~v~ 214 (265)
+++...+..|.+.+ +++|.++|+++|+++|+||++...-.. ......+|++ +++|.+++ |+..|.++
T Consensus 205 i~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDiv--t~gK~lgg--G~Pi~av~ 280 (428)
T PRK12389 205 LVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLT--ALGKIIGG--GLPIGAYG 280 (428)
T ss_pred EEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCee--eechhhcC--CCceeEEe
Confidence 99999888898876 899999999999999999998632111 1123457876 67999954 46678777
Q ss_pred eechhHHHHHHH---HHHhccCCCChhHHHHHHhccC
Q 024619 215 VKGERLAKELYF---LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 215 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++++ +.+.+.. .....+...+|..++..+..|+
T Consensus 281 ~~~~-i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~ 316 (428)
T PRK12389 281 GRKD-IMEQVAPLGPAYQAGTMAGNPASMAAGIACLE 316 (428)
T ss_pred EHHH-HHhhhccCCCcccccCCccCHHHHHHHHHHHH
Confidence 7664 4343321 1122233455666655444444
No 326
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.30 E-value=1.6e-11 Score=106.41 Aligned_cols=232 Identities=19% Similarity=0.130 Sum_probs=142.0
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC-CChhHHHHHHHHHhHh--CCCceEEecchHHH
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS-GNPTRDALESLLAKLD--KADRALCFTSGMAA 82 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~-g~~~~~~l~~~l~~~~--g~~~~i~~~~g~~a 82 (265)
..+.++++|.+ ++..+|...|++..+....... ..+..... ..+...++.+++.+.. +.+.+.+.+||++|
T Consensus 13 ~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~----~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseA 88 (339)
T PF00202_consen 13 VDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANK----LNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEA 88 (339)
T ss_dssp TTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHH----CSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred CCCCEEEECCCCccceecCCCccccchhHHHHhhh----cccccccceeccchhhhhhhhhhccccccceeeeccCchHH
Confidence 34578999953 4667999888877776533221 12222122 3467899999999998 44578888999999
Q ss_pred HHHHHHh-c--------CCCCEEEEcCCCCCChHHHHHhh---------cCCCCeEEEeecCCCHHH----------HH-
Q 024619 83 LAAVTHL-L--------GTGEEIVAGDDLYGGTDRLLSRV---------TPKTGVVVKRVNTCDLDE----------VA- 133 (265)
Q Consensus 83 l~~~~~~-~--------~~g~~viv~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~~d~~~----------l~- 133 (265)
+...+.+ . ....+|+....+|++.......+ .......+..+|.++... ++
T Consensus 89 ve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (339)
T PF00202_consen 89 VEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEE 168 (339)
T ss_dssp HHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHH
Confidence 8633332 2 13468888888888654321111 112222346667666555 22
Q ss_pred ---hhcCCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEecccc
Q 024619 134 ---SAIGPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATK 200 (265)
Q Consensus 134 ---~~~~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK 200 (265)
+.-.+++.+|+++......|.+.+ +++|.++|++||+++|.||++. .|-.+. .....+|+++. +|
T Consensus 169 ~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK 246 (339)
T PF00202_consen 169 LIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GK 246 (339)
T ss_dssp HHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EG
T ss_pred HHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccccc--cc
Confidence 222467889999998877776642 7999999999999999999985 333332 23446899876 69
Q ss_pred ccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.+++ |+..+.++.+++.. +.........+..-++..+...++.|+
T Consensus 247 ~l~g--G~p~sav~~~~~i~-~~~~~~~~~~T~~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 247 GLGG--GLPISAVLGSEEIM-EAFQPGSHGSTFGGNPLSCAAALATLE 291 (339)
T ss_dssp GGGT--TSSEEEEEEEHHHH-TTSCTTSSTCTTTT-HHHHHHHHHHHH
T ss_pred chhh--hhhcccccccchhh-ccccccccccccccchHhhhhhhhHHH
Confidence 9965 37788888877543 322222222333444565555444444
No 327
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.30 E-value=8.2e-11 Score=105.44 Aligned_cols=204 Identities=17% Similarity=0.199 Sum_probs=124.6
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC--CCceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al 83 (265)
.+.++++|.++ +..+|...|.+..+..-+.... .+... ...++...++.+++.++.. .+.+.+.+||++|+
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l----~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAv 122 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATL----DYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESV 122 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence 35678888532 3558888888777654332221 11111 1245667788899988873 35688889999998
Q ss_pred HHHHHh---c----C-C-CCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCCC-----------------
Q 024619 84 AAVTHL---L----G-T-GEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTCD----------------- 128 (265)
Q Consensus 84 ~~~~~~---~----~-~-g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~d----------------- 128 (265)
...+.+ . . + ..+|+....+|++........... ++ ..+..++.+.
T Consensus 123 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
T PRK09221 123 DTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAE 202 (445)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHH
Confidence 633322 1 1 1 357888888888764321111100 00 0112222110
Q ss_pred -HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCccE
Q 024619 129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADI 193 (265)
Q Consensus 129 -~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~di 193 (265)
.+++++.+. +++.+|+++......|.+.+ +++|.++|++||+++|+||++ +.|..+. .....+|+
T Consensus 203 ~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi 282 (445)
T PRK09221 203 LADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDI 282 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCE
Confidence 245555553 46889999999988899877 999999999999999999998 4443332 12334687
Q ss_pred EEeccccccccCCCceeeEEEeechh
Q 024619 194 VMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+ +++|.+++ +.+..|.++.+++.
T Consensus 283 ~--~~gK~l~g-G~~Pi~av~~~~~i 305 (445)
T PRK09221 283 I--TFAKGLTN-GAIPMGAVIASDEI 305 (445)
T ss_pred E--Eecccccc-CcccceeeEEcHHH
Confidence 6 57998853 22335777666543
No 328
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.30 E-value=6.6e-11 Score=105.46 Aligned_cols=228 Identities=12% Similarity=0.046 Sum_probs=133.6
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al 83 (265)
.+.++++|.++ +-.+|...|.+..+..-+.... .........++...++.+++.+.... +.+.+.+||++|+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l---~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~ 114 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRF---THTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAV 114 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhc---cCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHH
Confidence 45678888632 3458998888877754332221 11111122345677888889888743 3578888999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhc-----CCCC-----eEEEeecCCC----------HHHHHhhcC---
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVT-----PKTG-----VVVKRVNTCD----------LDEVASAIG--- 137 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~-----~~~g-----~~~~~~~~~d----------~~~l~~~~~--- 137 (265)
...+.+ .....+|+....+|++.......+. ...+ ..+..++.++ .+++++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~ 194 (425)
T PRK07495 115 ENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADV 194 (425)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhcc
Confidence 633332 2335678888888888753321111 0111 1223333322 344455542
Q ss_pred --CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCcCC---CCCCccEEEeccccccccCCC
Q 024619 138 --PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLSRP---LELGADIVMHSATKFIAGHSD 207 (265)
Q Consensus 138 --~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~~~---~~~~~di~~~s~sK~~~g~~g 207 (265)
.++++|+++....-+|.+. | +++|.++|++||+++|+||+|. .+..+.. ...+...-+.+++|.++ +|
T Consensus 195 ~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~--~G 272 (425)
T PRK07495 195 DPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLA--GG 272 (425)
T ss_pred CCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhc--CC
Confidence 4688999988776677553 2 7999999999999999999985 2222211 11222223457899994 35
Q ss_pred ceeeEEEeechhHHHHHHHHHHhccCCCChhHHHH
Q 024619 208 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 242 (265)
Q Consensus 208 ~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (265)
+++|+++.+++.. +.+...........++..++.
T Consensus 273 ~pigav~~~~~i~-~~~~~~~~~~T~~~~pl~~aa 306 (425)
T PRK07495 273 FPLAAVTGRAEIM-DAPGPGGLGGTYGGNPLGIAA 306 (425)
T ss_pred ccceEEEEcHHHH-hccCCCCcCCCCCCCHHHHHH
Confidence 8899998876543 322221222334445555553
No 329
>PRK06105 aminotransferase; Provisional
Probab=99.29 E-value=1.1e-10 Score=104.96 Aligned_cols=233 Identities=14% Similarity=0.100 Sum_probs=139.8
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCC--ccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPY--DYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a 82 (265)
.+.++++|.+ ++..+|...|.+.++..-+... ..+ .++...++...+++++|.+++.. +.+.+.+||++|
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA 121 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKK----LPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEA 121 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHh----CCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 4578999864 3466999988877776533221 111 11122345678899999988743 457788899999
Q ss_pred HHHHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcCC------CCe---EEEeecCCC----------------
Q 024619 83 LAAVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTPK------TGV---VVKRVNTCD---------------- 128 (265)
Q Consensus 83 l~~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~~------~g~---~~~~~~~~d---------------- 128 (265)
+.+.+.+. . + ..+|+....+|++.......+... ++. .+..++.++
T Consensus 122 ve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 201 (460)
T PRK06105 122 NDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFAT 201 (460)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHH
Confidence 86433331 1 2 357888788887775321111110 110 112222211
Q ss_pred --HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCcc
Q 024619 129 --LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGAD 192 (265)
Q Consensus 129 --~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~d 192 (265)
.+++++.+. .++.+|+++..+...|.+.+ ++++.++|++||+++|+||++ +.|..+. .....+|
T Consensus 202 ~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PD 281 (460)
T PRK06105 202 RLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPD 281 (460)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCC
Confidence 244555552 46889999998887888765 899999999999999999998 5555431 2234578
Q ss_pred EEEeccccccccCCCceeeEEEeechhHHHHHHHH-------HHhccCCCChhHHHHHHhccCc
Q 024619 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
++ +++|.+++ +.+.+|.++.+++ +.+.+... ....+...+|..+...+..|+.
T Consensus 282 i~--~~gK~lgg-G~~P~~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~ 341 (460)
T PRK06105 282 IL--VMSKQLSS-SYQPLSAVLMNEK-VYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAI 341 (460)
T ss_pred ee--eeeccccc-CcccceEEEEcHH-HHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 77 56999964 2234688877764 33333211 1123344556666554444443
No 330
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.29 E-value=9.5e-11 Score=105.37 Aligned_cols=231 Identities=17% Similarity=0.168 Sum_probs=134.6
Q ss_pred cceeEeeccCCCCC--CCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619 9 VSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~ 84 (265)
.+.++|+|. ++.+ +|...|.+..+..-+... ..+......++...+++++++++.+. +.+.+.+||++|+.
T Consensus 70 dG~~ylD~~-g~~~~~lGh~~p~v~~Ai~~ql~~----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve 144 (459)
T PRK06082 70 DGKKYMDFH-GNNVHQLGYGHPHVIEKVKEQMAK----LPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIG 144 (459)
T ss_pred CCCEEEEcc-cHhhcccCCCCHHHHHHHHHHHHh----CCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHH
Confidence 456889997 4444 888777666665422221 11111222456788999999998853 45777788899986
Q ss_pred HHHHhc---CCCCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeec--------CCC--------HHHHHhhc
Q 024619 85 AVTHLL---GTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVN--------TCD--------LDEVASAI 136 (265)
Q Consensus 85 ~~~~~~---~~g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~--------~~d--------~~~l~~~~ 136 (265)
+...+. ....+|+....+|++.......+... .+ ..+..++ ..+ ++.+++.+
T Consensus 145 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 224 (459)
T PRK06082 145 MALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVI 224 (459)
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHH
Confidence 444432 33467887778887764221111110 00 0111222 111 24466655
Q ss_pred C--CCceEEEEecCCCCcccccc---HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccC
Q 024619 137 G--PWTKLVWVESPTNPRQQICD---IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGH 205 (265)
Q Consensus 137 ~--~~~~~i~~~~~~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~ 205 (265)
. .++.+|+++...+..+.+.| ++++.++|++||+++|.||++. .|..+ ......+|+++ ++|.+++
T Consensus 225 ~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~g- 301 (459)
T PRK06082 225 EKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGG- 301 (459)
T ss_pred hcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEE--ecccccC-
Confidence 4 46889999998876433445 8999999999999999999975 23332 12234578886 7999964
Q ss_pred CCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 206 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 206 ~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+.+..|.++.+++ +...............+|..++..+..|+
T Consensus 302 G~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 343 (459)
T PRK06082 302 GLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIE 343 (459)
T ss_pred CCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 2235677777664 32221100001233445665555444444
No 331
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.29 E-value=7.5e-11 Score=112.00 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=137.7
Q ss_pred CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHH
Q 024619 19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAALA-AVTH 88 (265)
Q Consensus 19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~ 88 (265)
...|++..-||.+.+..+..+ . +...|+|. |..+ .-++++.++++.|.+ +.-+...++++-. ++++
T Consensus 70 g~G~y~~~~p~~i~r~v~~~p-~---~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a 145 (939)
T TIGR00461 70 GMGYYGTILPPVIQRNLLENP-G---WYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALS 145 (939)
T ss_pred CCCcCCCcCChHHHHHHHhCc-h---hhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHH
Confidence 455666666677765433222 1 23345444 4433 778899999999998 4466666654443 3333
Q ss_pred h-c--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHH
Q 024619 89 L-L--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMA 165 (265)
Q Consensus 89 ~-~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a 165 (265)
. . +++++|++++-.||.+...++..++..|++++.++ .+++++.+ ++.++++.+|+ ..|.+.|+++|++++
T Consensus 146 ~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~l~~~~--~~~~v~~q~Pn-~~G~ied~~~i~~~~ 219 (939)
T TIGR00461 146 FNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSDIKKAV--DVFGCLLQYPA-TDGSILDYKQLIDAL 219 (939)
T ss_pred HHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHHHhhcC--CEEEEEEECCC-CCeEEecHHHHHHHH
Confidence 2 2 23488999999999999898888899999999986 45566555 57888889894 589999999999999
Q ss_pred HHcCCEEEEeCC-cCCCCCcCCCCCCccEEEeccccc-----cccCCCceeeEEEeechhHH
Q 024619 166 HAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATKF-----IAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 166 ~~~~~~li~D~~-~~~~~~~~~~~~~~di~~~s~sK~-----~~g~~g~~~G~v~~~~~~~~ 221 (265)
+++|.+++++.- .+.+.+..|.++|.||++++..+| ++||. .|++.++++...
T Consensus 220 h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~---aG~~a~~~~l~r 278 (939)
T TIGR00461 220 HSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPH---AAFFAVKDEYNR 278 (939)
T ss_pred HHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCc---eeeeeecHhhHh
Confidence 999999999743 355666789999999999887774 33554 689988876543
No 332
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.28 E-value=3.4e-11 Score=105.03 Aligned_cols=154 Identities=15% Similarity=0.074 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHhHhCCC--c-eEE-ecchHHHHH-HHHHhc-CCCCEEEEcCCCCCChHHHHH-hhcCCCCe-EEEeecC
Q 024619 55 PTRDALESLLAKLDKAD--R-ALC-FTSGMAALA-AVTHLL-GTGEEIVAGDDLYGGTDRLLS-RVTPKTGV-VVKRVNT 126 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~--~-~i~-~~~g~~al~-~~~~~~-~~g~~viv~~~~~~~~~~~~~-~~~~~~g~-~~~~~~~ 126 (265)
...+++.+.++++++.+ . +++ .+||+.++. ++..++ ++|++|++.. . +-..|. +.++..|+ ++..++.
T Consensus 39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~---FG~r~~~eia~~~g~~~v~~l~~ 114 (374)
T TIGR01365 39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-S---FGKGWVTDVTKQLKLPDVRVLEA 114 (374)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-H---HHHHHHHHHHHhcCCCCcEEEcC
Confidence 34788899999999864 2 444 455678886 778888 5888888753 3 333444 77788888 4555543
Q ss_pred -----CCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccccc
Q 024619 127 -----CDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 201 (265)
Q Consensus 127 -----~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~sK~ 201 (265)
.++++++. . +.|++++....||...|+++++... +++++++|.+.+.|..+...+ ++|+++.|.+|+
T Consensus 115 ~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK~ 186 (374)
T TIGR01365 115 EYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-KLDVVTFSWQKV 186 (374)
T ss_pred CCCCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh-HCcEEEEechhc
Confidence 37777763 1 2267888888999999998766433 489999999999888775555 499999999999
Q ss_pred cccCCCceeeEEEeechhHHH
Q 024619 202 IAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~ 222 (265)
+++|||+ ++++.+++.+..
T Consensus 187 L~~ppGl--s~v~vs~~Al~~ 205 (374)
T TIGR01365 187 LGGEGAH--GMLILSPRAVAR 205 (374)
T ss_pred cCCCCce--EEEEECHHHHHH
Confidence 9999996 888888876644
No 333
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.27 E-value=1.7e-10 Score=103.48 Aligned_cols=230 Identities=15% Similarity=0.068 Sum_probs=136.3
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCC-CCChhHHHHHHHHHhHhCC----CceEEe-cchH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA----DRALCF-TSGM 80 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~----~~~i~~-~~g~ 80 (265)
.+.++|+|.++ +..+|...|.+..+..-+... ..+.++. ..++...++.+.+.++... ...+++ +||+
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~----~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGs 112 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQS----GLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGA 112 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHh----ccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHH
Confidence 45688998643 455899888877776432221 1112121 2446788899999988743 234454 7999
Q ss_pred HHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----CC-----eEEEeecCCC-------------H----HH
Q 024619 81 AALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----TG-----VVVKRVNTCD-------------L----DE 131 (265)
Q Consensus 81 ~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----~g-----~~~~~~~~~d-------------~----~~ 131 (265)
+|....+.+ .....+|+....+|++........... .+ ..+..++.++ . +.
T Consensus 113 EA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (442)
T TIGR00709 113 DAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEY 192 (442)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHH
Confidence 998633333 233467888888888886443222211 00 1122222221 1 11
Q ss_pred HHhhcC------CCceEEEEecCCCCccccc-c---HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEE
Q 024619 132 VASAIG------PWTKLVWVESPTNPRQQIC-D---IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVM 195 (265)
Q Consensus 132 l~~~~~------~~~~~i~~~~~~np~G~~~-~---l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~ 195 (265)
+++.+. .++++|+++...+..|.+. | ++++.++|++||+++|.||++. .|..+. .....+|+++
T Consensus 193 ~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~ 272 (442)
T TIGR00709 193 FENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV 272 (442)
T ss_pred HHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE
Confidence 222221 4688999988887777763 2 7999999999999999999985 333321 1234578887
Q ss_pred eccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 196 ~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++|.+++ |++.|+++.+++ . .............-++..+...+..|+
T Consensus 273 --~gK~l~~--G~Pigav~~~~~-~-~~~~~~~~~~T~~gnpla~aaa~a~L~ 319 (442)
T TIGR00709 273 --MSKAVGG--GLPLAVLLIAPE-F-DAWQPAGHTGTFRGNQLAMVTGTEALN 319 (442)
T ss_pred --EcccccC--CcccEEEEEchH-H-hccCCCcCCCCCCcCHHHHHHHHHHHH
Confidence 7999954 588999988765 3 211111112233444555555444443
No 334
>PRK06149 hypothetical protein; Provisional
Probab=99.27 E-value=1.6e-10 Score=112.62 Aligned_cols=231 Identities=16% Similarity=0.121 Sum_probs=140.2
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh--CCCceEEecchHHHHHHH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAV 86 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~--g~~~~i~~~~g~~al~~~ 86 (265)
.+.++++|.++...+|...|.+..+..-+... .. ..++..++...++++++++++ +.+.+.+++||++|+.+.
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~----l~-~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~A 657 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSL----LN-TNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLA 657 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHh----cc-ccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHH
Confidence 35788999744445787777776665422221 11 112234567888999999987 456788999999998633
Q ss_pred HHh---cCCCCEEEEcCCCCCChHHHHHhhcC----C--------CCeEEEeec------C--CC-----HHHHHhhc--
Q 024619 87 THL---LGTGEEIVAGDDLYGGTDRLLSRVTP----K--------TGVVVKRVN------T--CD-----LDEVASAI-- 136 (265)
Q Consensus 87 ~~~---~~~g~~viv~~~~~~~~~~~~~~~~~----~--------~g~~~~~~~------~--~d-----~~~l~~~~-- 136 (265)
+.+ ......|+..+.+|++.......+.. . .+...+..+ . .+ .+++++.+
T Consensus 658 lklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 658 IRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 332 23346688888888865422111100 0 011111111 1 11 12332222
Q ss_pred ----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCC------CCCCccEEEeccccc
Q 024619 137 ----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRP------LELGADIVMHSATKF 201 (265)
Q Consensus 137 ----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~------~~~~~di~~~s~sK~ 201 (265)
..++.+|+++......|.+.+ ++++.++|++||+++|.||++ +.|..+.. ....+||+ +++|.
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~ 815 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKG 815 (972)
T ss_pred HhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--Eeccc
Confidence 246889999998888888876 899999999999999999998 56655531 23457888 67999
Q ss_pred cccCCCceeeEEEeechhHHHHHHH-HHHhccCCCChhHHHHHHhccCc
Q 024619 202 IAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 202 ~~g~~g~~~G~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
+++ |+..|+++++++. .+.+.. .....+...+|..+...+..|+.
T Consensus 816 lg~--G~Pl~av~~~~~i-~~~~~~~~~~~sT~~gnP~~~aaala~L~~ 861 (972)
T PRK06149 816 MGN--GHPLGAVITRREI-AEALEAEGYFFSSTGGSPVSCRIGMAVLDV 861 (972)
T ss_pred ccC--CeeeEEEEEcHHH-HhhhccCCcccCCCCCCHHHHHHHHHHHHH
Confidence 954 3667888887644 333321 11123345567666665555543
No 335
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.27 E-value=2.8e-10 Score=101.97 Aligned_cols=204 Identities=15% Similarity=0.101 Sum_probs=127.8
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC---CCceEEecchHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK---ADRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~a 82 (265)
.+.++++|.++ +..+|...|.+..+..-+... ..+... ...++...++.+.+.+... .+.+.+.+||++|
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA 127 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEK----FLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTES 127 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHh----ccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHH
Confidence 35678888643 445888888877775533222 111111 1234667888999988874 3567788899999
Q ss_pred HH-HHHHh--cCCCCEEEEcCCCCCChHHHHHhhcCC-----C-----CeEEEeecCC----------C--------HHH
Q 024619 83 LA-AVTHL--LGTGEEIVAGDDLYGGTDRLLSRVTPK-----T-----GVVVKRVNTC----------D--------LDE 131 (265)
Q Consensus 83 l~-~~~~~--~~~g~~viv~~~~~~~~~~~~~~~~~~-----~-----g~~~~~~~~~----------d--------~~~ 131 (265)
+. ++... ....++|+....+|++.......+... . ...+..++.+ + .+.
T Consensus 128 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (441)
T PRK05769 128 NEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDF 207 (441)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHH
Confidence 85 33321 233467888888888876432222110 0 0012222221 1 123
Q ss_pred HHh-hc-----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEE
Q 024619 132 VAS-AI-----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVM 195 (265)
Q Consensus 132 l~~-~~-----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~ 195 (265)
+++ .+ .+++.+|+++......|.+.+ +++|.++|++||+++|+||++. .|..+. ......|+++
T Consensus 208 le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt 287 (441)
T PRK05769 208 IEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT 287 (441)
T ss_pred HHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE
Confidence 444 11 246889999999888898877 9999999999999999999986 222221 1123468874
Q ss_pred eccccccccCCCceeeEEEeechhH
Q 024619 196 HSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 196 ~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
++|.+++ |+.+|+++.+++..
T Consensus 288 --~~K~l~~--G~p~gav~~~~~i~ 308 (441)
T PRK05769 288 --LAKAIAG--GLPLGAVIGRAELM 308 (441)
T ss_pred --EcccccC--CcccEEEEEehhhh
Confidence 7899953 47788888776543
No 336
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.27 E-value=8.4e-11 Score=102.93 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=108.5
Q ss_pred HHHHHHHHHhHhCCC---------ceEEecchHHHH-HHHHHh----c----CCC-----C-EEEEcCCCCCChHHHHHh
Q 024619 57 RDALESLLAKLDKAD---------RALCFTSGMAAL-AAVTHL----L----GTG-----E-EIVAGDDLYGGTDRLLSR 112 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~---------~~i~~~~g~~al-~~~~~~----~----~~g-----~-~viv~~~~~~~~~~~~~~ 112 (265)
-.++.+++++++|.+ ..+++++|++++ .++... . ..| + .|++++-+|.+.. +
T Consensus 81 E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~----K 156 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIE----K 156 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHH----H
T ss_pred hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHH----H
Confidence 556667888888876 367888888775 333322 1 112 2 4566777887775 6
Q ss_pred hcCCCCeEEEeecCC-----CHHHHHhhcCC---C---ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 113 VTPKTGVVVKRVNTC-----DLDEVASAIGP---W---TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 113 ~~~~~g~~~~~~~~~-----d~~~l~~~~~~---~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
.+...|+.++.++.+ |++++++++.+ + +-+|+.+.....+|.+.|+++|.++|+++++++++|.+|+..
T Consensus 157 aa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~ 236 (373)
T PF00282_consen 157 AARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGS 236 (373)
T ss_dssp HHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGG
T ss_pred hcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccc
Confidence 667788888888755 67888877642 2 335666778889999999999999999999999999999864
Q ss_pred CCcCC----C---CCCccEEEeccccccccCCCceeeEEEeechhHH
Q 024619 182 VLSRP----L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 182 ~~~~~----~---~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
.+..+ . -..+|=+..++|||++.|-+ +|+++.+++...
T Consensus 237 ~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~--~~~~l~r~~~~l 281 (373)
T PF00282_consen 237 ALLSPEYRHLLFGIERADSITIDPHKWLGVPYG--CGVLLVRDKSDL 281 (373)
T ss_dssp GGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGH
T ss_pred ccccccccccccccccccccccchhhhhcCCcc--ceeEEeecccch
Confidence 43211 1 12468899999999988865 699988887543
No 337
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.27 E-value=2.8e-10 Score=102.13 Aligned_cols=232 Identities=16% Similarity=0.180 Sum_probs=139.6
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC---CceEEecchHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~---~~~i~~~~g~~al 83 (265)
.+.++|+|.+ ++..+|...|.+.++..-+... ...+.+....++...++.+++.+.+.. +.+.+++||++|+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~---~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~ 130 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVAR---FTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAV 130 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHh---ccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHH
Confidence 4567889864 2456999888888776533322 111222222346678899999888742 3578889999998
Q ss_pred HHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecC----CC---------------HHH
Q 024619 84 AAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNT----CD---------------LDE 131 (265)
Q Consensus 84 ~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~----~d---------------~~~ 131 (265)
...+.+ ....++|+...++|++.......... ..+. .+..++. .+ .+.
T Consensus 131 e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK06058 131 ENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITV 210 (443)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHH
Confidence 633332 33457899889999888644222111 0010 1112221 11 222
Q ss_pred HHhhcC-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEecccc
Q 024619 132 VASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATK 200 (265)
Q Consensus 132 l~~~~~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK 200 (265)
+++.+. +++++|+++..+...|.+.+ +++|.++|++||+++|.||++. .+..+ .......|+++. +|
T Consensus 211 l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK 288 (443)
T PRK06058 211 IEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITT--AK 288 (443)
T ss_pred HHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEE--cc
Confidence 334443 57889999877665666643 8999999999999999999985 33222 122345688755 79
Q ss_pred ccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 201 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.++ +|++.|+++.+++.. +.+.......+..-++..++..++.|+
T Consensus 289 ~l~--~G~Pi~av~~~~~i~-~~~~~~~~~~T~~gnpl~~aaa~a~L~ 333 (443)
T PRK06058 289 GIA--GGLPLSAVTGRAEIM-DAPHPGGLGGTYGGNPVACAAALAAIE 333 (443)
T ss_pred ccc--CCCccEEEEEcHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 995 368899998876543 323222222334455666555555444
No 338
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=99.26 E-value=2.7e-11 Score=101.36 Aligned_cols=183 Identities=20% Similarity=0.216 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHhHh---C---CC-ceEEecchH-HHHH-HHHHhc----CC--CCEEEEcCCCCCChHHHHHhhcCCCCe
Q 024619 55 PTRDALESLLAKLD---K---AD-RALCFTSGM-AALA-AVTHLL----GT--GEEIVAGDDLYGGTDRLLSRVTPKTGV 119 (265)
Q Consensus 55 ~~~~~l~~~l~~~~---g---~~-~~i~~~~g~-~al~-~~~~~~----~~--g~~viv~~~~~~~~~~~~~~~~~~~g~ 119 (265)
....+|++.+.+++ | ++ .-|++++|+ |-+. ++-++- .+ --.|+...|-|+.|.... ..++....
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s~~y 121 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDSRLY 121 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-BTTE
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-HhccccCc
Confidence 34667777776665 3 23 578888886 6665 444442 11 236899999999997553 44444444
Q ss_pred EEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619 120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA 198 (265)
Q Consensus 120 ~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~ 198 (265)
++.- |...+...-.+.+-+=++++||||.|.+. -.+.+.-+..+|.|-+|..+.+. .+...+.||+++|+
T Consensus 122 ~w~G----da~~~~~~~~~~~~IElVTSPNNPDG~lr-----~~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~ 192 (363)
T PF04864_consen 122 KWAG----DASNFKNSDNPSPYIELVTSPNNPDGQLR-----EAVLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTL 192 (363)
T ss_dssp EEEE----ECCCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEEH
T ss_pred cccc----cHHhhccCCCCCCeEEEEeCCCCCccccc-----chhcCCCCcceeeeeeeecccccccCCCCCCceEEEEE
Confidence 4432 22222211112233448999999999984 12234456678999999999885 45566789999999
Q ss_pred ccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 199 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
||.- |+.|.|.||.+.+++.+.++...+......+++...+..+++-|+
T Consensus 193 SK~T-GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk 241 (363)
T PF04864_consen 193 SKLT-GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILK 241 (363)
T ss_dssp HHHC-S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHH
T ss_pred eccc-CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 9987 899999999999999999888888888888888776655444443
No 339
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.26 E-value=2.7e-10 Score=101.66 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=139.5
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~ 84 (265)
.+.++|+|.++ ...+|...|.+.++..-+.... . .+ ...++...++.+.+.+..+. +.+.+.+||++|..
T Consensus 51 dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~--~~-~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e 124 (433)
T PRK00615 51 LGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERG---T--SY-GLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATM 124 (433)
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC---C--CC-CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHH
Confidence 35678888643 3458988888887764333221 1 11 11345677888888888754 36888899999986
Q ss_pred HHHHh---cCCCCEEEEcCCCCCChHHH-HHh--hcC--------CC-----CeEEEeecCCCHHHHHhhcC---CCceE
Q 024619 85 AVTHL---LGTGEEIVAGDDLYGGTDRL-LSR--VTP--------KT-----GVVVKRVNTCDLDEVASAIG---PWTKL 142 (265)
Q Consensus 85 ~~~~~---~~~g~~viv~~~~~~~~~~~-~~~--~~~--------~~-----g~~~~~~~~~d~~~l~~~~~---~~~~~ 142 (265)
..+.+ .....+|+....+|++.... +.. ... .. ......++..|.+++++.+. +++++
T Consensus 125 ~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aa 204 (433)
T PRK00615 125 TAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG 204 (433)
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEE
Confidence 33333 22346788888888885311 000 000 00 00112234457788877763 46789
Q ss_pred EEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCC-Cc-----CCCCCCccEEEeccccccccCCCceeeE
Q 024619 143 VWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV-LS-----RPLELGADIVMHSATKFIAGHSDVMAGV 212 (265)
Q Consensus 143 i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~-~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G~ 212 (265)
|+++......|.+.| +++|.++|++||+++|+||++. |. .+ .......|+++ ++|.+++ |+.+|+
T Consensus 205 vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~--~gK~lgg--G~p~~a 279 (433)
T PRK00615 205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITV--YGKILGG--GLPAAA 279 (433)
T ss_pred EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEE--EcccccC--Ccceee
Confidence 999999888898866 5799999999999999999983 33 21 11233578864 7999953 355788
Q ss_pred EEeechhHHHHHHHH---HHhccCCCChhHHHHHHhccC
Q 024619 213 LAVKGERLAKELYFL---QNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 213 v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++++++.+ +.+... ....+...+|..++..+..|+
T Consensus 280 v~~~~~i~-~~~~~~~~~~~~~T~~g~p~~~aa~la~L~ 317 (433)
T PRK00615 280 VVAHKSIM-DHLAPEGTIFQAGTLSGNPLAMAAGKASIN 317 (433)
T ss_pred eeecHHHH-hhhcCCCCcccCCCCcccHHHHHHHHHHHH
Confidence 88876543 322211 112233345666655544444
No 340
>PRK07678 aminotransferase; Validated
Probab=99.23 E-value=6.6e-10 Score=99.85 Aligned_cols=233 Identities=16% Similarity=0.105 Sum_probs=137.9
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-ceEEecchHHHHH-
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-RALCFTSGMAALA- 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-~~i~~~~g~~al~- 84 (265)
.+.++|+|.+ ++..+|...|.+..+..-+.... .+......++...++.+.+.+..+.. .+.+.+||++|+.
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~----~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~ 120 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTL----SYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANET 120 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhc----CccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHH
Confidence 3567888853 23458988888877654332221 11111124566778889998887554 5677789999885
Q ss_pred HHHHh---c----CCC-CEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCCC-----------------HH
Q 024619 85 AVTHL---L----GTG-EEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTCD-----------------LD 130 (265)
Q Consensus 85 ~~~~~---~----~~g-~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~d-----------------~~ 130 (265)
++... . ++| .+|+....+|++............ + ..+..++.++ .+
T Consensus 121 AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK07678 121 AFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVK 200 (451)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHH
Confidence 33322 1 123 578888888888753321111100 0 0112222111 12
Q ss_pred HHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCc-----CCCCCCccEEEe
Q 024619 131 EVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLS-----RPLELGADIVMH 196 (265)
Q Consensus 131 ~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~-----~~~~~~~di~~~ 196 (265)
.+++.+ .+++.+|+++....-.|.+.+ ++++.++|++||+++|+||++ +.|..+ ......+|+++
T Consensus 201 ~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt- 279 (451)
T PRK07678 201 EIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT- 279 (451)
T ss_pred HHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE-
Confidence 244444 256899999998877777754 899999999999999999998 444433 12344689884
Q ss_pred ccccccccCCCceeeEEEeechhHHHHHHH------HHHhccCCCChhHHHHHHhccCc
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
++|.+++ +.+..|.++.+++.. +.+.. +....+...+|..++..+..|+.
T Consensus 280 -~gK~lgg-G~~Pi~av~~~~~i~-~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~ 335 (451)
T PRK07678 280 -MAKGITS-AYLPLSATAVKKEIY-EAFKGKGEYEHFRHVNTFGGNPAACALALKNLEI 335 (451)
T ss_pred -eeccccc-CCcceeEEEEcHHHH-HHHhccCcccccccCCCCCcCHHHHHHHHHHHHH
Confidence 5999964 235678887877543 32321 11233344556666655554443
No 341
>PRK06062 hypothetical protein; Provisional
Probab=99.22 E-value=6.2e-10 Score=99.96 Aligned_cols=232 Identities=13% Similarity=0.131 Sum_probs=139.8
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++|+|.+ ++..+|...|.+..+..-+... ..+......++...++.+++.++.. .+.+.+.+||++|..
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve 126 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAAR----LCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANE 126 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHh----cCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHH
Confidence 4567888864 2455899888888775533222 1111122245678889999988874 356888889999986
Q ss_pred HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC----------CCeEEEeecC---------CC-------HHHHHhh
Q 024619 85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK----------TGVVVKRVNT---------CD-------LDEVASA 135 (265)
Q Consensus 85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~---------~d-------~~~l~~~ 135 (265)
..+.+ ...+.+|+....+|++........... .|+.....+. .+ ++.+++.
T Consensus 127 ~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~ 206 (451)
T PRK06062 127 HAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERV 206 (451)
T ss_pred HHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHH
Confidence 33332 233467888888888875332121110 1111111110 12 4556666
Q ss_pred cC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccc
Q 024619 136 IG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKF 201 (265)
Q Consensus 136 ~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~ 201 (265)
+. +++.+|+++......|.+.+ +++|.++|++||+++|+||++. .|..+ ......+|++ +++|.
T Consensus 207 l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~--t~gK~ 284 (451)
T PRK06062 207 IELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI--TFAKG 284 (451)
T ss_pred HHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee--eechh
Confidence 63 45789999999888888876 9999999999999999999986 33332 1223457876 57999
Q ss_pred cccCCCc-eeeEEEeechhHHHHHHHH--HHhccCCCChhHHHHHHhccCc
Q 024619 202 IAGHSDV-MAGVLAVKGERLAKELYFL--QNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 202 ~~g~~g~-~~G~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
+++ |+ ..|.++.+++ +.+.+... .......-+|..++..+..|+.
T Consensus 285 lgg--G~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 332 (451)
T PRK06062 285 VNS--GYVPLGGVAISEA-IAATFADRPYPGGLTYSGHPLACAAAVATINA 332 (451)
T ss_pred hhc--CCcCcEEEEEcHH-HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 964 32 3566666664 44433211 1111223345566555554443
No 342
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.19 E-value=4.6e-10 Score=99.97 Aligned_cols=232 Identities=12% Similarity=0.060 Sum_probs=135.0
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++++|.+ ++..+|...|.+.++..-+.... ....+....++...++.+.+.+... .+.+.+.+||++|+.
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e 114 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTM---SHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVE 114 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhC---CCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHH
Confidence 4567888864 35558998888887765333221 1111111234567888888988864 456888899999986
Q ss_pred HHHHhcC--------C-CCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCC-----C-------HHHHH
Q 024619 85 AVTHLLG--------T-GEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTC-----D-------LDEVA 133 (265)
Q Consensus 85 ~~~~~~~--------~-g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~-----d-------~~~l~ 133 (265)
..+.+.. + +.+|+....+|++........... .+ ..+..++.+ + .+.++
T Consensus 115 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 194 (422)
T PRK05630 115 VAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLE 194 (422)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHH
Confidence 3333211 2 357888888888764322111110 00 011222211 1 23444
Q ss_pred hhcCCCceEEEEecC-CCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEecccccc
Q 024619 134 SAIGPWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFI 202 (265)
Q Consensus 134 ~~~~~~~~~i~~~~~-~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~ 202 (265)
+.+.+++.+|+++.. ..-.|.+. .++++.++|++||+++|+||++. .|..+. .....+||+ +++|.+
T Consensus 195 ~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l 272 (422)
T PRK05630 195 LLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIM--CVGKAL 272 (422)
T ss_pred HHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCee--eeechh
Confidence 445568999999984 76667663 37999999999999999999983 222221 123357888 679998
Q ss_pred ccCCC-ceeeEEEeechhHHHHHHH------HHHhccCCCChhHHHHHHhccC
Q 024619 203 AGHSD-VMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 203 ~g~~g-~~~G~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+| | ..+|+++++++. .+.+.. +....+...+|..+...+..|+
T Consensus 273 ~g--G~~p~~av~~~~~i-~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~ 322 (422)
T PRK05630 273 TG--GFMSFAATLCTDKV-AQLISTPNGGGALMHGPTFMANPLACAVAHASLE 322 (422)
T ss_pred hc--CccccceeeccHHH-HHHHhccCCCCccccCCCCcCCHHHHHHHHHHHH
Confidence 54 2 236777776643 332221 0112333455666555444444
No 343
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.18 E-value=1e-09 Score=98.66 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=137.2
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~ 84 (265)
.+.++++|.++ +..+|...|.+..+..-+.... ......|. .++...++.+.+.+.... +.+.+.+||++|+.
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~-~~~~~~~~--~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e 127 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALI-QHSMIGYT--HSERAIRVAEKLAEISPIENPKVLFGLSGSDAVD 127 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhc-cccccCcc--CCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHH
Confidence 45788899643 4569998888877765332221 01111111 235677888999888753 46888889999986
Q ss_pred HHHHh---cCCCCEEEEcCCCCCChHHHHHhhcC-----CCCe-----EEEeecCC-------------CHH--------
Q 024619 85 AVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTP-----KTGV-----VVKRVNTC-------------DLD-------- 130 (265)
Q Consensus 85 ~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~-----~~g~-----~~~~~~~~-------------d~~-------- 130 (265)
..+.+ ...+.+|+....+|++.......... ..+. .+..++.+ +.+
T Consensus 128 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (457)
T PRK05639 128 MAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLD 207 (457)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHH
Confidence 33332 23346788888888886543222111 1111 12233322 122
Q ss_pred HHHhhc------CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEE
Q 024619 131 EVASAI------GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIV 194 (265)
Q Consensus 131 ~l~~~~------~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~ 194 (265)
.+++.+ ..++.+|+++......|.+.+ +++|.++|++||+++|+||++. .|..+ ......+|++
T Consensus 208 ~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv 287 (457)
T PRK05639 208 YLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLI 287 (457)
T ss_pred HHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEE
Confidence 233332 357899999998887777643 7999999999999999999986 22222 1223468988
Q ss_pred EeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 195 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+ ++|.+++ |+..|+++.+++.. +... .........+|..+...+..|+
T Consensus 288 ~--~gK~l~g--G~pi~av~~~~~i~-~~~~-~~~~~T~~g~p~~~aaa~a~l~ 335 (457)
T PRK05639 288 I--FGKGVAS--GMGLSGVIGRKELM-DLTS-GSALLTPAANPVISAAAEATLE 335 (457)
T ss_pred E--echhhcC--CCcceeEEehHHHH-hhcC-CCcccCCCcCHHHHHHHHHHHH
Confidence 7 7999964 35568887776544 3211 1112233455655555444443
No 344
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.17 E-value=5.2e-10 Score=99.69 Aligned_cols=232 Identities=12% Similarity=0.060 Sum_probs=133.2
Q ss_pred ceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHHH
Q 024619 10 STLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAA 85 (265)
Q Consensus 10 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~~ 85 (265)
+.++++|.+ ++..+|...|.+.++...+.... ....+....++...++.+++.++... +.+.+.+||++|+..
T Consensus 42 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~---~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~ 118 (428)
T PRK07986 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM---SHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEV 118 (428)
T ss_pred CCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhc---CCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHH
Confidence 467888853 34568888877777764332221 11111112446688888999888743 467888899999863
Q ss_pred HHHh---c-----CCCCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecC-----------CCHHHHHhhc
Q 024619 86 VTHL---L-----GTGEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNT-----------CDLDEVASAI 136 (265)
Q Consensus 86 ~~~~---~-----~~g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~-----------~d~~~l~~~~ 136 (265)
.+.+ . .+..+|+....+|++.......+... ++ ..+..++. .|.+++++.+
T Consensus 119 AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l 198 (428)
T PRK07986 119 AMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLM 198 (428)
T ss_pred HHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHH
Confidence 3322 1 23467888888888754321111110 00 01112221 2445666666
Q ss_pred C---CCceEEEEecC-CCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEecccccc
Q 024619 137 G---PWTKLVWVESP-TNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFI 202 (265)
Q Consensus 137 ~---~~~~~i~~~~~-~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~~ 202 (265)
. +++.+|+++.. +.-.|.+. .+++|.++|++||+++|+||++. .|..+. .....+|+++ ++|.+
T Consensus 199 ~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l 276 (428)
T PRK07986 199 AAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC--LGKAL 276 (428)
T ss_pred HhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEE--echhh
Confidence 4 46788999885 55445442 28999999999999999999983 222221 2233578874 79998
Q ss_pred ccCCC-ceeeEEEeechhHHHHHHHH-----HHhccCCCChhHHHHHHhccCc
Q 024619 203 AGHSD-VMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 203 ~g~~g-~~~G~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
+| | +..|.++++++ +.+.+... ........+|..++..+..|+.
T Consensus 277 ~g--G~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~ 326 (428)
T PRK07986 277 TG--GTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAVANASLSL 326 (428)
T ss_pred hC--CcccCcchhchHH-HHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHH
Confidence 53 4 34666666654 43433221 1122233446666555554443
No 345
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=99.16 E-value=5.7e-10 Score=97.76 Aligned_cols=164 Identities=24% Similarity=0.277 Sum_probs=107.8
Q ss_pred CCh-hHHHHHHHHHhHhCCC--ceEEecchHHHH-HHHHH--h-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec
Q 024619 53 GNP-TRDALESLLAKLDKAD--RALCFTSGMAAL-AAVTH--L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN 125 (265)
Q Consensus 53 g~~-~~~~l~~~l~~~~g~~--~~i~~~~g~~al-~~~~~--~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (265)
|.. ...+++..++++.|.+ +.-+...++++- .++++ . -+++++|+++...||.+...++..+...|++++.++
T Consensus 107 G~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~ 186 (429)
T PF02347_consen 107 GRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP 186 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred HHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence 443 3778999999999999 234455544222 22222 2 333469999999999999888888999999999998
Q ss_pred CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCC--cCCCCCcCCCCCCccEEEeccccccc
Q 024619 126 TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNS--IMSPVLSRPLELGADIVMHSATKFIA 203 (265)
Q Consensus 126 ~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~--~~~~~~~~~~~~~~di~~~s~sK~~~ 203 (265)
..+..... .+++.+|++.+|+. .|.+.++++|+++++++|.++++ .+ .+.+.+..|.++|.||++++ +|.|+
T Consensus 187 ~~~~~~~d---~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg 260 (429)
T PF02347_consen 187 LDEDGTTD---DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFG 260 (429)
T ss_dssp BBTTCSB----STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT
T ss_pred ccccCCcc---ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCc
Confidence 65321111 67899999999954 89999999999999999999877 44 35666778999999999877 67443
Q ss_pred cCCCc---eeeEEEeechhHHH
Q 024619 204 GHSDV---MAGVLAVKGERLAK 222 (265)
Q Consensus 204 g~~g~---~~G~v~~~~~~~~~ 222 (265)
-|.|. -.|++.++++....
T Consensus 261 ~p~~~GGP~~G~~a~~~~l~r~ 282 (429)
T PF02347_consen 261 IPMGFGGPGAGFFAVREDLVRQ 282 (429)
T ss_dssp ---CCC-S--EEEEE-GGGGGG
T ss_pred ccCCCCCCCeeeEEEhhhhhhh
Confidence 22111 15899888875543
No 346
>PRK07480 putative aminotransferase; Validated
Probab=99.15 E-value=1e-09 Score=98.65 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=135.3
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC--CCCChhHHHHHHHHHhHhCC--CceEEecchHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT--RSGNPTRDALESLLAKLDKA--DRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~a 82 (265)
.+.++|+|.+ ++..+|...|.+.++..-+... ..+... ...++...++.+++.+.... +.+.+.+||++|
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA 123 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRE----LPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEA 123 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHh----cCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHH
Confidence 3467888853 2345888888877775433222 111111 12346788899999988743 468888999998
Q ss_pred HH-HHHHh--c----C-C-CCEEEEcCCCCCChHHHHHhhc------CCCCe---EEEeecCC---------C-------
Q 024619 83 LA-AVTHL--L----G-T-GEEIVAGDDLYGGTDRLLSRVT------PKTGV---VVKRVNTC---------D------- 128 (265)
Q Consensus 83 l~-~~~~~--~----~-~-g~~viv~~~~~~~~~~~~~~~~------~~~g~---~~~~~~~~---------d------- 128 (265)
.. ++... . . + ..+|+....+|++......... +..+. .+..++.+ +
T Consensus 124 ~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 203 (456)
T PRK07480 124 NDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLA 203 (456)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHH
Confidence 85 33322 1 1 3 3468888888887642211110 00110 11122211 1
Q ss_pred -HHHHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccE
Q 024619 129 -LDEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADI 193 (265)
Q Consensus 129 -~~~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di 193 (265)
.+.+++.+ .+++.+|+++..+...|.+.+ +++|.++|++||+++|+||++. .|..+. .....+|+
T Consensus 204 ~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDi 283 (456)
T PRK07480 204 AARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDL 283 (456)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCe
Confidence 24554444 256889999998887787754 8999999999999999999983 444331 22345788
Q ss_pred EEeccccccccCCCc-eeeEEEeechhHHHHHH----HHHHhccCCCChhHHHHHHhccCc
Q 024619 194 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELY----FLQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
+ +++|.+++ |+ ..|.++.+++ +.+.+. .+....+..-+|..++..++.|+.
T Consensus 284 v--~~gK~l~g--G~~Pi~av~~~~~-i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 339 (456)
T PRK07480 284 M--TIAKGLTS--GYIPMGAVGVGDR-VAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339 (456)
T ss_pred e--eeehhhcc--CCccceEEEEcHH-HHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 7 56999864 32 3566666654 434331 012223344556666665555543
No 347
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.14 E-value=3e-10 Score=107.51 Aligned_cols=195 Identities=18% Similarity=0.195 Sum_probs=138.8
Q ss_pred EeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHH--
Q 024619 13 LMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMA-- 81 (265)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~-- 81 (265)
..+|- +..|++..-|++++...+.. .. +...|+|+ |... .-+++..++++.|.+ +.-+...+++
T Consensus 80 ~~~fi-G~G~y~~~~P~vi~~~i~~~-~~---~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~a 154 (954)
T PRK12566 80 WTSLI-GMGYHGTVTPTVILRNVLEN-PG---WYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAA 154 (954)
T ss_pred ccccc-cccccCCcCcHHHHHHHHhC-ch---hhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHH
Confidence 33454 56677777777774443222 22 33445555 4433 778889999999998 5566666653
Q ss_pred -HHHHHHHhcC-CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHH
Q 024619 82 -ALAAVTHLLG-TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIR 159 (265)
Q Consensus 82 -al~~~~~~~~-~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~ 159 (265)
|+.+.....+ +..+|+|++..||.+...++..++..|++++. +++++.+..++.+|++.+|+ ..|.+.|++
T Consensus 155 EA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~~~~~v~vq~P~-~~G~i~d~~ 227 (954)
T PRK12566 155 EAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAHAVFGALLQYPD-THGEIRDLR 227 (954)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCCCEEEEEEECCC-CceEEccHH
Confidence 3332222222 25689999999999999999999999999886 33444555679999999995 589999999
Q ss_pred HHHHHHHHcCCEEEEe-CCcCCCCCcCCCCCCccEEEecccc-----ccccCCCceeeEEEeechhHHH
Q 024619 160 KIAEMAHAHGALLLVD-NSIMSPVLSRPLELGADIVMHSATK-----FIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 160 ~i~~~a~~~~~~li~D-~~~~~~~~~~~~~~~~di~~~s~sK-----~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
+|.++++++|.++++- +..+.+.+..|.++|.||++++... .|+||. .|++.++++...+
T Consensus 228 ~i~~~~h~~gal~~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~---ag~~a~~~~~~R~ 293 (954)
T PRK12566 228 PLIDQLHGQQALACVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPH---AAYFACRDDYKRA 293 (954)
T ss_pred HHHHHHHHcCCEEEEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCC---eeeeeehHHHHhh
Confidence 9999999999885533 4456777888999999999987554 676664 5999888765443
No 348
>PRK05965 hypothetical protein; Provisional
Probab=99.13 E-value=3e-09 Score=95.78 Aligned_cols=231 Identities=13% Similarity=0.147 Sum_probs=136.7
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC--CCCChhHHHHHHHHHhHhC--CCceEEecchHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT--RSGNPTRDALESLLAKLDK--ADRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~--~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~a 82 (265)
.+.++|+|.+ ++..+|...|.+..+..-+... ..+... ...++...++.+++.+... .+.+.+.+||++|
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~----~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEA 119 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRE----LPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDA 119 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHh----cCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHH
Confidence 3467888853 3556888887777776533322 111111 1134567788889988873 3457777889999
Q ss_pred HH-HHHHh--c----C-C-CCEEEEcCCCCCChHHHHHhhcC------CCCe---EEEeecC---------CC-------
Q 024619 83 LA-AVTHL--L----G-T-GEEIVAGDDLYGGTDRLLSRVTP------KTGV---VVKRVNT---------CD------- 128 (265)
Q Consensus 83 l~-~~~~~--~----~-~-g~~viv~~~~~~~~~~~~~~~~~------~~g~---~~~~~~~---------~d------- 128 (265)
+. ++... . . + ..+|+....+|++.......... ..+. .+..++. .|
T Consensus 120 ve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (459)
T PRK05965 120 VDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA 199 (459)
T ss_pred HHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHH
Confidence 86 43322 1 1 2 35788888888887532111111 1110 0112221 12
Q ss_pred -HHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619 129 -LDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI 193 (265)
Q Consensus 129 -~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di 193 (265)
++++++.+. +++.+|+++..+...|.+.+ ++++.++|++||+++|.||++. .|-.+ ......+||
T Consensus 200 ~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDi 279 (459)
T PRK05965 200 SVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDL 279 (459)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCe
Confidence 245666553 46899999998887787643 7999999999999999999974 33332 223446899
Q ss_pred EEeccccccccCCC-ceeeEEEeechhHHHHHHH-------HHHhccCCCChhHHHHHHhccC
Q 024619 194 VMHSATKFIAGHSD-VMAGVLAVKGERLAKELYF-------LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 194 ~~~s~sK~~~g~~g-~~~G~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++ ++|.++| | +..|.++.+++.. +.+.. +....+..-+|..++..++.|+
T Consensus 280 v~--~gKgl~g--G~~Pi~av~~~~~i~-~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~ 337 (459)
T PRK05965 280 MT--VAKGLTS--GYVPMGAVLMSDHVY-QGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLR 337 (459)
T ss_pred EE--echhhcc--CCcceeEEEEcHHHH-HHHhccccccccccccCCCCCCHHHHHHHHHHHH
Confidence 96 5999854 4 3578887776543 32221 1122233445666655444444
No 349
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.13 E-value=3.8e-10 Score=98.61 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=114.2
Q ss_pred CChhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHhcC-CCCEEEEcCC----CCCChHHHHHhhcCCCCeEEEeec-
Q 024619 53 GNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLG-TGEEIVAGDD----LYGGTDRLLSRVTPKTGVVVKRVN- 125 (265)
Q Consensus 53 g~~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~~~-~g~~viv~~~----~~~~~~~~~~~~~~~~g~~~~~~~- 125 (265)
|.|...+|++.+++++|.+..+.+.+|..+-. ++..+++ +|+++++..+ .+..+.......+...|+.++.++
T Consensus 72 gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~ 151 (467)
T TIGR02617 72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYT 151 (467)
T ss_pred cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccc
Confidence 44889999999999999999999999987764 6677777 6887775553 222222211234566777766642
Q ss_pred --------------CCCHHHHHhhcCC----CceEEEEecCCCCc-ccccc---HHHHHHHHHHcCCEEEEeCCcCC---
Q 024619 126 --------------TCDLDEVASAIGP----WTKLVWVESPTNPR-QQICD---IRKIAEMAHAHGALLLVDNSIMS--- 180 (265)
Q Consensus 126 --------------~~d~~~l~~~~~~----~~~~i~~~~~~np~-G~~~~---l~~i~~~a~~~~~~li~D~~~~~--- 180 (265)
..|++++++++++ +...+...-.+|.. |+..+ ++++.++|++||+.++.|.+--.
T Consensus 152 ~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA 231 (467)
T TIGR02617 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENA 231 (467)
T ss_pred hhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHh
Confidence 1289999999873 34455444445544 45544 68999999999999999987421
Q ss_pred --------CCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 181 --------PVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 181 --------~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+....+. ....|.+..|++|.+++|- +|+++++++.
T Consensus 232 ~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApv---Gg~Lag~d~~ 282 (467)
T TIGR02617 232 YFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCFKDDS 282 (467)
T ss_pred hhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcc---cceEEecchh
Confidence 1111111 1358999999999998774 6899999883
No 350
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.12 E-value=2.6e-09 Score=95.96 Aligned_cols=205 Identities=13% Similarity=0.092 Sum_probs=126.6
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC--ceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~ 84 (265)
.+.++|+|.++ +..+|...|.+..+..-+.... .........++...++.+++.+..+.. .+.+++||++|+.
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve 128 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTL---EHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVE 128 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhc---CCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHH
Confidence 35678888643 5568988888887764332221 111111123466778889998887643 5788889999986
Q ss_pred HHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC-----------------CH
Q 024619 85 AVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC-----------------DL 129 (265)
Q Consensus 85 ~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~-----------------d~ 129 (265)
..+.+. .+ ..+|+....+|++.......+.... + ..+..++.+ ++
T Consensus 129 ~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 208 (453)
T PRK06943 129 IALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARAL 208 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHH
Confidence 333332 12 3678888888888642211111100 0 011112211 23
Q ss_pred HHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEE
Q 024619 130 DEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVM 195 (265)
Q Consensus 130 ~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~ 195 (265)
+++++.+. +++.+|+++. .+...|.+.+ ++++.++|++||+++|.||++. .|..+ ......+|+++
T Consensus 209 ~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt 288 (453)
T PRK06943 209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC 288 (453)
T ss_pred HHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe
Confidence 56666663 5789999998 4776777643 7999999999999999999974 44433 22344689986
Q ss_pred eccccccccCCC-ceeeEEEeechhH
Q 024619 196 HSATKFIAGHSD-VMAGVLAVKGERL 220 (265)
Q Consensus 196 ~s~sK~~~g~~g-~~~G~v~~~~~~~ 220 (265)
. +|.++| | +..|.++.+++..
T Consensus 289 ~--gKgl~g--G~~Pi~av~~~~ei~ 310 (453)
T PRK06943 289 L--SKGISG--GYLPLSLVLSRDAIF 310 (453)
T ss_pred e--ehhhcc--CcccceEEEEcHHHH
Confidence 4 999854 4 3578777776543
No 351
>PRK07482 hypothetical protein; Provisional
Probab=99.12 E-value=2.1e-09 Score=96.78 Aligned_cols=205 Identities=14% Similarity=0.062 Sum_probs=126.0
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCC-ccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPY-DYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al 83 (265)
.+.++|+|.+ ++..+|...|.+.++..-+.... ..+ .+....++...++.+.+.+... .+.+.+.+||++|+
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~---~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAv 124 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL---AYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDAN 124 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc---CccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence 4567888864 34568988888887765433221 111 1111234668888999988874 34677889999998
Q ss_pred HHHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcC------CCC---eEEEeecCC------------------
Q 024619 84 AAVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTP------KTG---VVVKRVNTC------------------ 127 (265)
Q Consensus 84 ~~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~------~~g---~~~~~~~~~------------------ 127 (265)
.+.+.+. . + ..+|+....+|++.......+.. ..+ ..+..++.+
T Consensus 125 e~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 204 (461)
T PRK07482 125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAY 204 (461)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHH
Confidence 6333322 1 2 35788888888886432111110 001 011111111
Q ss_pred CHHHHHhhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619 128 DLDEVASAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI 193 (265)
Q Consensus 128 d~~~l~~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di 193 (265)
+++.+++.+. +++.+|+++......|.+.+ +++|.++|++||+++|.||++. .|-.+ ......+|+
T Consensus 205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDi 284 (461)
T PRK07482 205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDL 284 (461)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCE
Confidence 2456666652 46899999998877777743 7999999999999999999974 33332 223446899
Q ss_pred EEeccccccccCCCceeeEEEeechh
Q 024619 194 VMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
++ ++|.++|. -+..|.++.+++.
T Consensus 285 v~--~gKgl~gG-~~Pi~av~~~~~i 307 (461)
T PRK07482 285 IT--VAKGLTSA-YAPLSGSIVGEKV 307 (461)
T ss_pred EE--EccccccC-ccccceeeecHHH
Confidence 96 59998542 1235666666643
No 352
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.12 E-value=2.1e-09 Score=95.96 Aligned_cols=232 Identities=13% Similarity=0.085 Sum_probs=133.6
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++++|.+ ++..+|...|.+..+..-+.... .........++...++.+.+.+... .+.+.+.+||++|+.
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve 118 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKM---SHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVE 118 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhc---CCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHH
Confidence 3567888853 35568888877777654332211 1111111134567788888888763 356888899999986
Q ss_pred HHHHh---c-----CC-CCEEEEcCCCCCChHHHHHhhcCC-------CC---eEEEeecCC-----------CHHHHHh
Q 024619 85 AVTHL---L-----GT-GEEIVAGDDLYGGTDRLLSRVTPK-------TG---VVVKRVNTC-----------DLDEVAS 134 (265)
Q Consensus 85 ~~~~~---~-----~~-g~~viv~~~~~~~~~~~~~~~~~~-------~g---~~~~~~~~~-----------d~~~l~~ 134 (265)
+.+.+ . ++ ..+|+....+|++........... ++ ..+..++.+ +++.+++
T Consensus 119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~ 198 (429)
T PRK06173 119 VAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQD 198 (429)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHH
Confidence 33332 1 13 357888888888853211111000 00 011222211 2455566
Q ss_pred hcC---CCceEEEEecC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcCCCC--CcC-----CCCCCccEEEeccc
Q 024619 135 AIG---PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIMSPV--LSR-----PLELGADIVMHSAT 199 (265)
Q Consensus 135 ~~~---~~~~~i~~~~~-~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~~~--~~~-----~~~~~~di~~~s~s 199 (265)
.+. +++.+|+++.. +.-.|.+.+ ++++.++|++||+++|+||++ .|. .+. .....+||++ ++
T Consensus 199 ~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~g 275 (429)
T PRK06173 199 LLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IG 275 (429)
T ss_pred HHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--ee
Confidence 653 56899999985 776676632 799999999999999999998 442 221 1233578886 79
Q ss_pred cccccCCCc-eeeEEEeechhHHHHHHH-----HHHhccCCCChhHHHHHHhccCc
Q 024619 200 KFIAGHSDV-MAGVLAVKGERLAKELYF-----LQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 200 K~~~g~~g~-~~G~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
|.++| |+ .++.++.+++ +.+.+.. +....+...+|..++..++.|+.
T Consensus 276 K~l~g--G~~p~~a~~~~~~-i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~ 328 (429)
T PRK06173 276 KALTG--GYLTLSATITTEA-IAQTICSGEAKCFMHGPTFMANPLACAIAAESIRL 328 (429)
T ss_pred hhhhC--CccccceEEecHH-HHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHH
Confidence 99853 43 4666766664 3333221 11222334556666655555443
No 353
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.11 E-value=3.1e-09 Score=95.74 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=135.3
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC-----ceEEe-cchH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD-----RALCF-TSGM 80 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~-----~~i~~-~~g~ 80 (265)
.+.++++|.++ +..+|...|.+..+..-+... ...+......++...++.+.+.+....+ ...++ +||+
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~---~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGS 137 (464)
T PRK06938 61 EGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLAD---ELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGT 137 (464)
T ss_pred CCCEEEEccCCccccccCCCCHHHHHHHHHHHHh---hhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcH
Confidence 45688888533 455898888877775533221 1111111124466777888888775322 34455 6999
Q ss_pred HHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC-----------------CHHH
Q 024619 81 AALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC-----------------DLDE 131 (265)
Q Consensus 81 ~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~-----------------d~~~ 131 (265)
+|....+.+ .....+|+....+|++........... ++ ..+..++.+ +.+.
T Consensus 138 EAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 217 (464)
T PRK06938 138 DAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHY 217 (464)
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHH
Confidence 998643333 223467888888888875432221110 00 012233321 1455
Q ss_pred HHhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEE
Q 024619 132 VASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVM 195 (265)
Q Consensus 132 l~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~ 195 (265)
+++.+. +++.+|+++....-.|.+.+ ++++.++|++||+++|.||++. .|..+ ......+|+++
T Consensus 218 l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~ 297 (464)
T PRK06938 218 LENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV 297 (464)
T ss_pred HHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE
Confidence 666654 25889999988776677643 7999999999999999999974 33332 22344689986
Q ss_pred eccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 196 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 196 ~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
. +|.++| |+..|.++.+++ + +.+.......+..-++..++..++.|+
T Consensus 298 ~--gKglgg--G~PlsAv~~~~~-~-~~~~~~~~~~T~~gnpla~Aaa~a~L~ 344 (464)
T PRK06938 298 L--SKAIGG--SLPLAVVVYREW-L-DTWQPGAHAGTFRGNQMAMAAGSATLR 344 (464)
T ss_pred e--eccccC--CCceEEEeehhH-h-hccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 4 999853 477888887764 3 222111112233344555555555444
No 354
>PRK07481 hypothetical protein; Provisional
Probab=99.11 E-value=4.7e-09 Score=94.30 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=124.1
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC---CCceEEecchHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK---ADRALCFTSGMAA 82 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~a 82 (265)
.+.++++|.+ ++..+|...|.+..+..-+.... ...... ...++...++.+++.++++ .+.+.+.+||++|
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~---~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEA 116 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDEL---EYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDS 116 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhc---cceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHH
Confidence 3567888853 34569998888877654332221 111111 1134678889999998873 3457788889999
Q ss_pred HHHHHHh---c-----CC-CCEEEEcCCCCCChHHHHHhhcCC-----------CCeEEEeec------CC--CHHHH--
Q 024619 83 LAAVTHL---L-----GT-GEEIVAGDDLYGGTDRLLSRVTPK-----------TGVVVKRVN------TC--DLDEV-- 132 (265)
Q Consensus 83 l~~~~~~---~-----~~-g~~viv~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~------~~--d~~~l-- 132 (265)
+.+.+.+ . ++ ..+|+....+|++.......+... .|......+ .. |.+.+
T Consensus 117 ve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~ 196 (449)
T PRK07481 117 VETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELAR 196 (449)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHH
Confidence 8633332 1 12 357888888888865321111110 111111111 11 33333
Q ss_pred ------Hhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCcc
Q 024619 133 ------ASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGAD 192 (265)
Q Consensus 133 ------~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~d 192 (265)
++.+ .+++.+|+++..+...|.+.+ ++++.++|++||+++|.||++. .|..+ ......+|
T Consensus 197 ~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PD 276 (449)
T PRK07481 197 ICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPD 276 (449)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCC
Confidence 3323 256899999998887787754 8999999999999999999974 33332 22344588
Q ss_pred EEEeccccccccCCCceeeEEEeechh
Q 024619 193 IVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 193 i~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
+++ ++|.+++ +-+..|.++.+++.
T Consensus 277 iv~--~gKgl~g-G~~Pi~av~~~~~i 300 (449)
T PRK07481 277 IMC--LAKGITS-GYVPLGATMVNARI 300 (449)
T ss_pred EEE--EeecccC-CCcCceEEEEcHHH
Confidence 875 5999854 21346777777653
No 355
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.10 E-value=5.4e-09 Score=94.24 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=124.1
Q ss_pred ceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 10 STLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 10 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
+.++++|.++ +..+|...|.+..+..-+... ..+... ...++...++.+.+.++.. .+.+.+.+||++|..
T Consensus 46 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~----l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve 121 (466)
T PRK07030 46 GKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQ----LEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIE 121 (466)
T ss_pred CCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHh----cCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHH
Confidence 4678888543 445888888777765432222 111111 1134567888888888763 346788889999986
Q ss_pred HHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC-----------------CH
Q 024619 85 AVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC-----------------DL 129 (265)
Q Consensus 85 ~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~-----------------d~ 129 (265)
..+.+. . + +.+|+....+|++.......+... ++ ..+..+|.+ ++
T Consensus 122 ~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l 201 (466)
T PRK07030 122 VALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMF 201 (466)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHH
Confidence 333321 1 2 357888888888765332111111 00 011222211 13
Q ss_pred HHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEE
Q 024619 130 DEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVM 195 (265)
Q Consensus 130 ~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~ 195 (265)
+.+++.+. +++.+|+++. .+.-.|.+.+ ++++.++|++||+++|.||++. .|..+ ......+|+++
T Consensus 202 ~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~ 281 (466)
T PRK07030 202 AHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC 281 (466)
T ss_pred HHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe
Confidence 44555553 5788999998 5666677643 7999999999999999999974 33332 23344689986
Q ss_pred eccccccccCCC-ceeeEEEeechhH
Q 024619 196 HSATKFIAGHSD-VMAGVLAVKGERL 220 (265)
Q Consensus 196 ~s~sK~~~g~~g-~~~G~v~~~~~~~ 220 (265)
. +|.++| | +..|.++.+++..
T Consensus 282 ~--gKgl~g--G~~Pi~av~~~~ei~ 303 (466)
T PRK07030 282 L--SKALTG--GYLPLAAVLTTDTVY 303 (466)
T ss_pred e--ehhccC--CcccceEEEecHHHH
Confidence 5 999854 4 3578787776543
No 356
>PRK06148 hypothetical protein; Provisional
Probab=99.09 E-value=2.3e-09 Score=104.74 Aligned_cols=230 Identities=20% Similarity=0.139 Sum_probs=138.1
Q ss_pred cceeEeeccCCCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHHHH
Q 024619 9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAV 86 (265)
Q Consensus 9 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~~~ 86 (265)
.+.++++|.++...+|...|.+..+..-+.... + ..+...++...++.+++.+.+.. +.+.+++||++|..+.
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l--~---~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~A 696 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARL--N---TNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLA 696 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhc--C---CcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHH
Confidence 457888987555568988877777765333221 0 11122456788889999888743 4578889999998643
Q ss_pred HHh---cCCCCEEEEcCCCCCChHHHHHhhc-----CCCC----eEEEee--------cCC--C-------HHHHHhhcC
Q 024619 87 THL---LGTGEEIVAGDDLYGGTDRLLSRVT-----PKTG----VVVKRV--------NTC--D-------LDEVASAIG 137 (265)
Q Consensus 87 ~~~---~~~g~~viv~~~~~~~~~~~~~~~~-----~~~g----~~~~~~--------~~~--d-------~~~l~~~~~ 137 (265)
+.+ ...+.+|+....+|++......... +..+ ..+..+ +.. + .+.+++.+.
T Consensus 697 lklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 776 (1013)
T PRK06148 697 LRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA 776 (1013)
T ss_pred HHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence 333 2334678888888887753211110 0001 011111 111 1 123433332
Q ss_pred ------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC------CCCCCccEEEecccc
Q 024619 138 ------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR------PLELGADIVMHSATK 200 (265)
Q Consensus 138 ------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~------~~~~~~di~~~s~sK 200 (265)
.++++|+++......|.+.+ ++++.++|++||+++|.||++ +.|..+. .....+||++ ++|
T Consensus 777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK 854 (1013)
T PRK06148 777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGK 854 (1013)
T ss_pred hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecc
Confidence 46889999998887787765 899999999999999999998 3444432 1234678875 599
Q ss_pred ccccCCCceeeEEEeechhHHHHHHHH-HHhccCCCChhHHHHHHhccC
Q 024619 201 FIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 201 ~~~g~~g~~~G~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 248 (265)
.+++ |+..|.++++++. .+.+... ....+..-++..+...++.|+
T Consensus 855 ~lgg--G~Plgav~~~~ei-~~~~~~g~~~~~Tf~gnpla~aaa~a~L~ 900 (1013)
T PRK06148 855 PIGN--GHPMGAVVTTREI-ADSFDNGMEYFNTFGGNPVSCAIGLAVLD 900 (1013)
T ss_pred cccC--CcceEEEEEcHHH-HhhccCCCccccCCCCCHHHHHHHHHHHH
Confidence 9954 4678888887644 3322211 112333445666665544444
No 357
>PRK07036 hypothetical protein; Provisional
Probab=99.06 E-value=1.2e-08 Score=92.02 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=123.1
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++++|.++ +..+|...|.+..+..-+...... ...+....++...++.+++.+... .+.+.+.+||++|+.
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve 126 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPY--YTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVD 126 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcc--cccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHH
Confidence 34678888532 345888887777665432221100 011111234567888888888764 346778888999986
Q ss_pred HHHHhc-------C-C-CCEEEEcCCCCCChHHHHHhhcCCCC---------eEEEeecCCC-----------------H
Q 024619 85 AVTHLL-------G-T-GEEIVAGDDLYGGTDRLLSRVTPKTG---------VVVKRVNTCD-----------------L 129 (265)
Q Consensus 85 ~~~~~~-------~-~-g~~viv~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~d-----------------~ 129 (265)
..+.+. . + ..+|+....+|++............. ..+..++.++ .
T Consensus 127 ~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07036 127 SALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLV 206 (466)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHH
Confidence 333321 1 2 35788888888886533211111100 0122222111 1
Q ss_pred HHHHhhc----CCCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC------CCCCCccEE
Q 024619 130 DEVASAI----GPWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR------PLELGADIV 194 (265)
Q Consensus 130 ~~l~~~~----~~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~------~~~~~~di~ 194 (265)
+.+++.+ .+++.+|+++......|.+.+ ++++.++|++||+++|+||++ +.|..+. .....+||+
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDiv 286 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDII 286 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEE
Confidence 2333333 256889999999887888765 899999999999999999998 3444331 224467887
Q ss_pred EeccccccccCCC-ceeeEEEeechhH
Q 024619 195 MHSATKFIAGHSD-VMAGVLAVKGERL 220 (265)
Q Consensus 195 ~~s~sK~~~g~~g-~~~G~v~~~~~~~ 220 (265)
+ ++|.+++ | +..|.++.+++..
T Consensus 287 t--~gK~l~g--G~~Pi~av~~~~~i~ 309 (466)
T PRK07036 287 T--FAKGLTS--GYQPLGAVIISERLL 309 (466)
T ss_pred E--Ecccccc--CccccEEEEEcHHHH
Confidence 4 6999854 3 2467777766443
No 358
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.06 E-value=4.2e-09 Score=94.88 Aligned_cols=205 Identities=12% Similarity=0.083 Sum_probs=124.8
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDKA--DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al 83 (265)
.+.++|+|.++ +..+|...|.+..+...+.... .+... ...++...++.+.|.++... +.+.+.+||++|+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAv 129 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKI----AHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAV 129 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhC----CCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHH
Confidence 35678888532 4458888888877765333221 11111 11346678888999888743 4688888999998
Q ss_pred HHHHHh-c-------CC-CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC-----------------C
Q 024619 84 AAVTHL-L-------GT-GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC-----------------D 128 (265)
Q Consensus 84 ~~~~~~-~-------~~-g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~-----------------d 128 (265)
.+.+.+ . .+ ..+|+....+|++.......+.... + ..+..++.+ +
T Consensus 130 e~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~ 209 (460)
T PRK06916 130 EIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKH 209 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHH
Confidence 633332 1 23 3678888888888653321111100 0 011122111 2
Q ss_pred HHHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEE
Q 024619 129 LDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIV 194 (265)
Q Consensus 129 ~~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~ 194 (265)
++.+++.+. +++.+|+++. +..-.|.+.+ ++++.++|+++|+++|.||++. .|..+ ......+|++
T Consensus 210 ~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv 289 (460)
T PRK06916 210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIM 289 (460)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCee
Confidence 344555553 5789999998 5776777642 7999999999999999999973 33332 1223457887
Q ss_pred EeccccccccCCCceeeEEEeechhH
Q 024619 195 MHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
+ ++|.++| +-+..|.++.+++..
T Consensus 290 ~--~gK~l~g-G~~Pi~av~~~~ei~ 312 (460)
T PRK06916 290 T--AGKGLTG-GYLPIAITVTTDEIY 312 (460)
T ss_pred e--eehhhhc-CccccceeeecHHHH
Confidence 4 6998853 213578787776543
No 359
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=99.06 E-value=3.4e-09 Score=86.93 Aligned_cols=165 Identities=27% Similarity=0.367 Sum_probs=122.5
Q ss_pred HHHHHHHHHhHhCCCceE---EecchHHHHH-HHHHhcCCCCEEEE-cCCCCCChHHHH------HhhcCCCCeEEEeec
Q 024619 57 RDALESLLAKLDKADRAL---CFTSGMAALA-AVTHLLGTGEEIVA-GDDLYGGTDRLL------SRVTPKTGVVVKRVN 125 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~~~i---~~~~g~~al~-~~~~~~~~g~~viv-~~~~~~~~~~~~------~~~~~~~g~~~~~~~ 125 (265)
|+.|++-.++.+|++..+ -+-||+.|+. ++..+++|||+++. ..--|....+.. ...++.+|++..-++
T Consensus 67 RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~ 146 (416)
T COG4100 67 RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVP 146 (416)
T ss_pred hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecc
Confidence 888889999999999644 4668999996 78899999999874 333343333221 122345677777777
Q ss_pred CC-----CHHHHHhhcCCCceEEEEecC----CCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCC-cCCCCCCccE
Q 024619 126 TC-----DLDEVASAIGPWTKLVWVESP----TNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL-SRPLELGADI 193 (265)
Q Consensus 126 ~~-----d~~~l~~~~~~~~~~i~~~~~----~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~-~~~~~~~~di 193 (265)
+. |.+.++.++++++++|.+-.. .-|+=.+.++++++...|+. |+++++|.+|+...- ..|...+.|+
T Consensus 147 Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDl 226 (416)
T COG4100 147 LTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADL 226 (416)
T ss_pred cccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhh
Confidence 54 889999999999999987432 12444456788888888885 789999999987654 4688889999
Q ss_pred EEeccccccccCCCceeeEEEeechhHH
Q 024619 194 VMHSATKFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~~~G~v~~~~~~~~ 221 (265)
+-+|+-|.-+|.---.+|++.++.+.+.
T Consensus 227 iAGSLIKNpGGgiaktGGYiaGk~~~ve 254 (416)
T COG4100 227 IAGSLIKNPGGGIAKTGGYIAGKAELVE 254 (416)
T ss_pred hccceeeCCCCceeeccceeechHHHHH
Confidence 9999999775543334789988876554
No 360
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.06 E-value=1.3e-09 Score=97.57 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=119.0
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC-CCceEEecchHHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK-ADRALCFTSGMAALAA 85 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g-~~~~i~~~~g~~al~~ 85 (265)
.+.++|+|.+ ++..+|...|.+.++..-+.... . .++ .......++.+.+.++.. .+.+.+.+||++|...
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~----~-~~~-~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~ 119 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG----C-NFT-RPSAIELDAAESFLELIDGADMVKFCKNGSDATSA 119 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC----c-CCC-CCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHH
Confidence 4567888853 33559999888887765333321 1 122 112334567888888763 4568888999999863
Q ss_pred HHHh---cCCCCEEEEc-CCCCCChHHHHH-hhcCCCCe------EEEeecCCCHHHHHhhcC---CCceEEEEecCCCC
Q 024619 86 VTHL---LGTGEEIVAG-DDLYGGTDRLLS-RVTPKTGV------VVKRVNTCDLDEVASAIG---PWTKLVWVESPTNP 151 (265)
Q Consensus 86 ~~~~---~~~g~~viv~-~~~~~~~~~~~~-~~~~~~g~------~~~~~~~~d~~~l~~~~~---~~~~~i~~~~~~np 151 (265)
.+.+ ......|+.. ...|++...... ......+. .+..++..|++++++.+. .++++|+++.....
T Consensus 120 AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~ 199 (431)
T PRK06209 120 AVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD 199 (431)
T ss_pred HHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC
Confidence 3332 2223445543 233332110000 00001111 133445568888888774 35778898877654
Q ss_pred ccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC------CCCCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 152 RQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 152 ~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
.+....+++|.++|++||+++|+||++ .|.... .....+|+ .+++|.+++ |+.+|+++.+++.
T Consensus 200 ~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi--~t~gK~lgg--G~p~~av~~~~~i 268 (431)
T PRK06209 200 EPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDL--SCFGKALGN--GFAVSALAGKREY 268 (431)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcce--eeehhhhcC--CcccEEEEEHHHH
Confidence 333445999999999999999999998 333211 12335677 467999964 3557888776643
No 361
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.06 E-value=6e-09 Score=88.41 Aligned_cols=194 Identities=16% Similarity=0.143 Sum_probs=123.3
Q ss_pred eeEeeccCCCCC-CCCCCCCeeeccccccCCCC-CCCCCccCCC-CChh-HHHHHHHHHhHhCCC---------ceEEec
Q 024619 11 TLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT-ENGPYDYTRS-GNPT-RDALESLLAKLDKAD---------RALCFT 77 (265)
Q Consensus 11 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~y~~~-g~~~-~~~l~~~l~~~~g~~---------~~i~~~ 77 (265)
..-||++ ..-| ...-..|++++...+..... ....-.|-+. |.+. .+++.+.+ ||.+ ..+-..
T Consensus 26 ~~KVNLg-IGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ll---FG~d~~~l~~~Rv~t~Qt~ 101 (396)
T COG1448 26 PNKVNLG-IGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLL---FGADSPALAEDRVATVQTL 101 (396)
T ss_pred cCeeeee-eeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHh---cCCCcHHHHhhhHhheecC
Confidence 4466776 4444 22335677777654433322 2244556666 7764 54444433 3432 356667
Q ss_pred chHHHHHHHHH---hcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcC--CCceEEEE
Q 024619 78 SGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIG--PWTKLVWV 145 (265)
Q Consensus 78 ~g~~al~~~~~---~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~--~~~~~i~~ 145 (265)
+|+.|+..... -..+...|.+++|+|+.+. ...+..|.++...+. .|.+.+.+.+. ++..+|++
T Consensus 102 GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~----~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLL 177 (396)
T COG1448 102 GGTGALRVAADFLARFFPDATVWISDPTWPNHK----AIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLL 177 (396)
T ss_pred CcchHHHHHHHHHHHhCCCceEEeCCCCcHhHH----HHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEEEE
Confidence 88899864333 3456677999999999997 445678888887763 26777777765 34445555
Q ss_pred -ecCCCCccccccH---HHHHHHHHHcCCEEEEeCCcC---CCCCcC------CCCC-CccEEEeccccccccCCCceee
Q 024619 146 -ESPTNPRQQICDI---RKIAEMAHAHGALLLVDNSIM---SPVLSR------PLEL-GADIVMHSATKFIAGHSDVMAG 211 (265)
Q Consensus 146 -~~~~np~G~~~~l---~~i~~~a~~~~~~li~D~~~~---~~~~~~------~~~~-~~di~~~s~sK~~~g~~g~~~G 211 (265)
.-+|||||.-... ++|+++.++.+.+-++|-+|- .|.-.+ .... ..-+++.|+||.|+ .=|=|+|
T Consensus 178 H~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfg-LYgERVG 256 (396)
T COG1448 178 HGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFG-LYGERVG 256 (396)
T ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhh-hhhhccc
Confidence 5588999988654 778999999999999999974 221111 1111 12689999999994 4445666
Q ss_pred EE
Q 024619 212 VL 213 (265)
Q Consensus 212 ~v 213 (265)
..
T Consensus 257 a~ 258 (396)
T COG1448 257 AL 258 (396)
T ss_pred ee
Confidence 43
No 362
>PRK06917 hypothetical protein; Provisional
Probab=99.05 E-value=9.9e-09 Score=92.16 Aligned_cols=231 Identities=11% Similarity=0.068 Sum_probs=135.0
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCC-CCChhHHHHHHHHHhHhCC--CceEEecchHHHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTR-SGNPTRDALESLLAKLDKA--DRALCFTSGMAAL 83 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~-~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al 83 (265)
.+.++|+|.++ +..+|...|.+..+..-+... ..+.+.. ..++...++.+.+.+.+.. +.+.+++||++|+
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~----~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAv 104 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEE----VSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEAN 104 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhh----CcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHH
Confidence 35678898643 455899988888776533322 1222221 2456678899999988743 3577788999998
Q ss_pred HHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcCCC-----------CeEEEeecC------C---------C
Q 024619 84 AAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRVNT------C---------D 128 (265)
Q Consensus 84 ~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~------~---------d 128 (265)
.+.+.+. .+ ..+|+....+|++............ +......|. . +
T Consensus 105 e~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 184 (447)
T PRK06917 105 ETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLAC 184 (447)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHH
Confidence 6433332 12 3678888888888754321211110 111111110 0 2
Q ss_pred HHHHHhhcC----CCceEEEEecCCCC-cccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619 129 LDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI 193 (265)
Q Consensus 129 ~~~l~~~~~----~~~~~i~~~~~~np-~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di 193 (265)
.+.+++.+. +++.+|+++....- .|.+.+ ++++.++|++||+++|.||++. .|..+ ......+|+
T Consensus 185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi 264 (447)
T PRK06917 185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDI 264 (447)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCE
Confidence 345555553 46899999987653 345533 7999999999999999999975 22222 122335788
Q ss_pred EEeccccccccCCCc-eeeEEEeechhHHHHHHH----HHHhccCCCChhHHHHHHhccC
Q 024619 194 VMHSATKFIAGHSDV-MAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+ +++|.+++ |+ ..|.++.+++. .+.+.. +....+...++..++..++.|+
T Consensus 265 ~--~~gK~l~~--G~~Pi~a~~~~~~i-~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~ 319 (447)
T PRK06917 265 M--TLGKGLGA--GYTPIAATVVSDRV-MEPILRGSRSIMSGHTLSANPLSAATALAVLE 319 (447)
T ss_pred E--Eeeehhcc--CCcceEEEEEcHHH-HHHHhccCcccccccCCCCCHHHHHHHHHHHH
Confidence 6 56999954 33 46777776644 333321 1112233445665555444444
No 363
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.03 E-value=9.6e-09 Score=91.78 Aligned_cols=202 Identities=13% Similarity=0.037 Sum_probs=116.3
Q ss_pred ceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCC--CceEEecchHHHHH-
Q 024619 10 STLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALA- 84 (265)
Q Consensus 10 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~--~~~i~~~~g~~al~- 84 (265)
+.++++|.+ ++.++|...|.+..+...+... .........-++...++.+.+.++.+. +.+.++++|++|+.
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~ 120 (427)
T TIGR00508 44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDK---MSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEV 120 (427)
T ss_pred CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHh---cCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHH
Confidence 467888863 2347887766666554322211 011111111235567788888887643 46888889998875
Q ss_pred HHHHhc-------CC-CCEEEEcCCCCCChHHHHHhhcCCC-------C---eEEEeecC-----------CCHHHHHhh
Q 024619 85 AVTHLL-------GT-GEEIVAGDDLYGGTDRLLSRVTPKT-------G---VVVKRVNT-----------CDLDEVASA 135 (265)
Q Consensus 85 ~~~~~~-------~~-g~~viv~~~~~~~~~~~~~~~~~~~-------g---~~~~~~~~-----------~d~~~l~~~ 135 (265)
++.... .+ ..+|+....+|++............ + ..+..++. .|.+++++.
T Consensus 121 AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~ 200 (427)
T TIGR00508 121 ALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKL 200 (427)
T ss_pred HHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHH
Confidence 333221 12 3678888888887643221111100 0 00111110 134555555
Q ss_pred cC---CCceEEEEecC-CCCcccc----ccHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccccc
Q 024619 136 IG---PWTKLVWVESP-TNPRQQI----CDIRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKF 201 (265)
Q Consensus 136 ~~---~~~~~i~~~~~-~np~G~~----~~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~sK~ 201 (265)
+. +++++|++++. +.-.|.+ ..+++|.++|++||+++|+||+|. .|..+. ......|+++ ++|.
T Consensus 201 l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~ 278 (427)
T TIGR00508 201 MELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKA 278 (427)
T ss_pred HHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEE--echh
Confidence 53 46789999986 5544443 358999999999999999999983 222221 1233578775 7999
Q ss_pred cccCCCc-eeeEEEeech
Q 024619 202 IAGHSDV-MAGVLAVKGE 218 (265)
Q Consensus 202 ~~g~~g~-~~G~v~~~~~ 218 (265)
++| |+ .++.++.+++
T Consensus 279 l~g--G~~p~~a~~~~~~ 294 (427)
T TIGR00508 279 LTG--GYMTLSATVTTDK 294 (427)
T ss_pred hhc--CcccceEEEEcHH
Confidence 843 43 3566666554
No 364
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.02 E-value=1e-08 Score=87.36 Aligned_cols=186 Identities=19% Similarity=0.180 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhHhCCC-c-eEEecchH-HHHH-HH-HHh----cC---C-----CCEEEEcCCCCCChHHHHHhhcCCCC
Q 024619 56 TRDALESLLAKLDKAD-R-ALCFTSGM-AALA-AV-THL----LG---T-----GEEIVAGDDLYGGTDRLLSRVTPKTG 118 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~-~-~i~~~~g~-~al~-~~-~~~----~~---~-----g~~viv~~~~~~~~~~~~~~~~~~~g 118 (265)
-.-++++.+++++|.+ + +++..+++ .-+. ++ .++ .. | .=+.+.+.|.|.-.+ ..++.+|
T Consensus 70 Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHF----ai~E~~G 145 (425)
T PF12897_consen 70 GIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHF----AITEHFG 145 (425)
T ss_dssp --HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHH----HHHHHCT
T ss_pred ChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHH----HHHHhhC
Confidence 3667788889999987 3 44544555 3333 33 222 11 1 125788999985554 7778999
Q ss_pred eEEEeecCC----CHHHHHhhcC--CCceEEE-EecCCCCcccccc---HHHHHHH-HHHcCCEEEEeCCcCCCCC-cC-
Q 024619 119 VVVKRVNTC----DLDEVASAIG--PWTKLVW-VESPTNPRQQICD---IRKIAEM-AHAHGALLLVDNSIMSPVL-SR- 185 (265)
Q Consensus 119 ~~~~~~~~~----d~~~l~~~~~--~~~~~i~-~~~~~np~G~~~~---l~~i~~~-a~~~~~~li~D~~~~~~~~-~~- 185 (265)
++.+.||+. |.+.+++.+. +.+|.|+ ++--+||||.++. +++++++ +...+..|++|++|+.-.+ ..
T Consensus 146 iemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~ 225 (425)
T PF12897_consen 146 IEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEE 225 (425)
T ss_dssp -EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSS
T ss_pred cEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccc
Confidence 999999853 8999999874 5678875 4667799999976 4555555 2456999999999986554 11
Q ss_pred C--------------CCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 186 P--------------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 186 ~--------------~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+ ...+..+.+.|+||......| ++++..+...+......+.. ...+..-..+....+-++
T Consensus 226 ~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG--va~~aaS~~Nl~~~~~~~~~-~tIgpdKvNQLRHvrff~ 299 (425)
T PF12897_consen 226 PRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG--VAFFAASEANLAWIKKHLSV-QTIGPDKVNQLRHVRFFK 299 (425)
T ss_dssp S------HHHHHHHTT-TTSEEEEEESTTTS-TTSS---EEEEE-HHHHHHHHHHHHH-H-S---HHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc--eeeeecCHHHHHHHHHHhcC-ceeCccHHHHHHHHHHhc
Confidence 1 122467999999995544445 58888887766554443333 223333333444433333
No 365
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.02 E-value=4.3e-09 Score=96.80 Aligned_cols=122 Identities=17% Similarity=0.072 Sum_probs=87.7
Q ss_pred EEEEcCCCCCChHHHHHhhcCCCCe---EEEeecCC-----CHHHHHhhcC----CC--ceEEEEecCCCCccccccHHH
Q 024619 95 EIVAGDDLYGGTDRLLSRVTPKTGV---VVKRVNTC-----DLDEVASAIG----PW--TKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 95 ~viv~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~-----d~~~l~~~~~----~~--~~~i~~~~~~np~G~~~~l~~ 160 (265)
.++++.-.|.+.. +.+...|+ .++.+|.+ |+++|++.+. ++ +-+|+.+.....+|.+.|+++
T Consensus 224 ~vl~s~~aHyS~~----KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~e 299 (608)
T TIGR03811 224 KWLVPQTKHYSWL----KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDK 299 (608)
T ss_pred EEEECCCccHHHH----HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHH
Confidence 4667777777775 55566666 46777654 7888887774 22 445666777788999999999
Q ss_pred HHHHH---HHcCC--EEEEeCCcCCCC---CcC------C------------------------------CCCCccEEEe
Q 024619 161 IAEMA---HAHGA--LLLVDNSIMSPV---LSR------P------------------------------LELGADIVMH 196 (265)
Q Consensus 161 i~~~a---~~~~~--~li~D~~~~~~~---~~~------~------------------------------~~~~~di~~~ 196 (265)
|+++| +++|+ ++++|.+|+... +.+ | .-..+|=++.
T Consensus 300 I~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItv 379 (608)
T TIGR03811 300 IVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTI 379 (608)
T ss_pred HHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEe
Confidence 99998 67887 699999998532 111 0 0124788899
Q ss_pred ccccccccCCCceeeEEEeechhHHH
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
++||++..|-+ +|+++.++..+..
T Consensus 380 DpHK~g~~Py~--~G~ll~Rd~~~~~ 403 (608)
T TIGR03811 380 DPHKMGYIPYS--AGGIVIQDIRMRD 403 (608)
T ss_pred CcccccccCCC--eEEEEEeCHHHHH
Confidence 99999887765 6888888876544
No 366
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.02 E-value=1.2e-08 Score=92.04 Aligned_cols=204 Identities=11% Similarity=0.056 Sum_probs=123.5
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccC-CCCChhHHHHHHHHHhHhC-------CCceEEecc
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYT-RSGNPTRDALESLLAKLDK-------ADRALCFTS 78 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~-~~g~~~~~~l~~~l~~~~g-------~~~~i~~~~ 78 (265)
.+.++|+|.++ +..+|...|.+..+...+.... .+... ...++...++.+.+.+... .+.+.+.+|
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l----~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s 137 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGEL----EQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN 137 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhC----CCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC
Confidence 34678888543 4558888887776654332211 11111 1134567888888888763 246888899
Q ss_pred hHHHHHHHHHhc--------CC-CCEEEEcCCCCCChHHHHHhhcCCC------C---eEEEeecCC-------------
Q 024619 79 GMAALAAVTHLL--------GT-GEEIVAGDDLYGGTDRLLSRVTPKT------G---VVVKRVNTC------------- 127 (265)
Q Consensus 79 g~~al~~~~~~~--------~~-g~~viv~~~~~~~~~~~~~~~~~~~------g---~~~~~~~~~------------- 127 (265)
|++|+.+.+.+. ++ ..+|+....+|++............ + ..+..++.+
T Consensus 138 GSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~ 217 (472)
T PRK08742 138 GSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAED 217 (472)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHH
Confidence 999885333221 12 3678888888888753321111100 0 011222221
Q ss_pred ----CHHHHHhhcC---CCceEEEEec-CCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCC
Q 024619 128 ----DLDEVASAIG---PWTKLVWVES-PTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLEL 189 (265)
Q Consensus 128 ----d~~~l~~~~~---~~~~~i~~~~-~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~ 189 (265)
+++.+++.+. +++.+|+++. ...-.|.+.+ ++++.++|++||+++|.||++. .|..+ .....
T Consensus 218 ~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv 297 (472)
T PRK08742 218 YALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV 297 (472)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC
Confidence 1345555553 5788999998 4666677643 7999999999999999999974 34332 22244
Q ss_pred CccEEEeccccccccCCCceeeEEEeechh
Q 024619 190 GADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 190 ~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
.+|+++. +|.++|. -+..|.++.+++.
T Consensus 298 ~PDiv~~--gKgl~gG-~~Plaav~~~~ei 324 (472)
T PRK08742 298 MPDLLCL--SKGLTGG-FLPLSAVLATQQL 324 (472)
T ss_pred CCCEEEE--cccccCC-CCCcceeeccHHH
Confidence 6899864 9998542 1246777676654
No 367
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.99 E-value=2.6e-08 Score=89.73 Aligned_cols=231 Identities=18% Similarity=0.117 Sum_probs=133.7
Q ss_pred cceeEeeccCC--CCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhCCC----ceEEe-cchHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKAD----RALCF-TSGMA 81 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g~~----~~i~~-~~g~~ 81 (265)
.+.++|+|.++ +..+|...|.+.++..-+... ...+......++...++.+.+.+..... ..+++ +||++
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~---~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsE 132 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTS---GLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGAD 132 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhh---hccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHH
Confidence 45688999643 345898888887775432221 1111111124567788888998887422 24454 79999
Q ss_pred HHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC---------CeEEEeecCCC-------------HHHH----
Q 024619 82 ALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT---------GVVVKRVNTCD-------------LDEV---- 132 (265)
Q Consensus 82 al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~d-------------~~~l---- 132 (265)
|....+.+ ....++|+....+|++.......+.... ...+..++.++ .+.+
T Consensus 133 Ave~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (459)
T PRK06931 133 AVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYF 212 (459)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHH
Confidence 98633332 3345678888888888864432221110 01122233221 2222
Q ss_pred HhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEe
Q 024619 133 ASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMH 196 (265)
Q Consensus 133 ~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~ 196 (265)
++.+. +++.+|+++....-.|.+.+ ++++.++|++||+++|.||++. .|..+ ......+|+++
T Consensus 213 ~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt- 291 (459)
T PRK06931 213 ENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV- 291 (459)
T ss_pred HHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE-
Confidence 22221 35889999988877777643 7999999999999999999974 33332 22344689885
Q ss_pred ccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 197 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++|.+++ |+..|.++.++. + +.+.......+..-+|..+...++.|+
T Consensus 292 -~gK~l~g--G~Pi~av~~~~~-~-~~~~~~~~~~T~~gnpla~aaala~L~ 338 (459)
T PRK06931 292 -MSKAVGG--GLPLAVLGIKKE-F-DAWQPGGHTGTFRGNQLAMATGLTTLK 338 (459)
T ss_pred -ecccccC--CcceeeeeeHHH-H-hhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5999854 477788776543 3 222111122223344555555444443
No 368
>PRK07483 hypothetical protein; Provisional
Probab=98.98 E-value=2.1e-08 Score=89.99 Aligned_cols=204 Identities=13% Similarity=0.137 Sum_probs=124.3
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC--CCceEEecchHHHHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALA 84 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g--~~~~i~~~~g~~al~ 84 (265)
.+.++++|.+ ++..+|...|.+..+..-+.... .........++...++.+.+.++.. .+.+.+.+||++|+.
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~---~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve 104 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRL---AYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVE 104 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhc---cCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHH
Confidence 4568899964 35669998888887755333221 1111111245667888899988763 356888889999885
Q ss_pred -HHHHh--c-----CCC-CEEEEcCCCCCChHHHHHhhcCC------CC---eEEEeecCC----C--------------
Q 024619 85 -AVTHL--L-----GTG-EEIVAGDDLYGGTDRLLSRVTPK------TG---VVVKRVNTC----D-------------- 128 (265)
Q Consensus 85 -~~~~~--~-----~~g-~~viv~~~~~~~~~~~~~~~~~~------~g---~~~~~~~~~----d-------------- 128 (265)
++... . ++| .+|+....+|++........... .+ ..+..++.+ +
T Consensus 105 ~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (443)
T PRK07483 105 AALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRL 184 (443)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHH
Confidence 33321 2 133 56888888888775322111100 00 011122211 1
Q ss_pred HHHHHhhcC----CCceEEEEecCCC-Ccccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccE
Q 024619 129 LDEVASAIG----PWTKLVWVESPTN-PRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADI 193 (265)
Q Consensus 129 ~~~l~~~~~----~~~~~i~~~~~~n-p~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di 193 (265)
++++++.+. +++.+|+++.... -.|.+.+ ++.+.++|++||+++|.||++. .|..+ ......+|+
T Consensus 185 ~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDi 264 (443)
T PRK07483 185 ADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDL 264 (443)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCe
Confidence 245555442 5688999998875 3466643 8999999999999999999974 33332 122446898
Q ss_pred EEeccccccccCCCc-eeeEEEeechh
Q 024619 194 VMHSATKFIAGHSDV-MAGVLAVKGER 219 (265)
Q Consensus 194 ~~~s~sK~~~g~~g~-~~G~v~~~~~~ 219 (265)
++ ++|.+++ |+ ..|.++.+++.
T Consensus 265 v~--~gK~l~g--G~~Pi~av~~~~~i 287 (443)
T PRK07483 265 VT--IAKGLGA--GYQPIGAVLASDRI 287 (443)
T ss_pred ee--ehhhhcc--CccccEEEEEcHHH
Confidence 85 5999854 33 56777777654
No 369
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.95 E-value=1.6e-08 Score=84.11 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=118.9
Q ss_pred hHHHHHHHHHhHhCCCceEEecchHHHHHHHHHhcC---------C-CC-EEEEcCCCCCChHH-HHH-----hhcCCCC
Q 024619 56 TRDALESLLAKLDKADRALCFTSGMAALAAVTHLLG---------T-GE-EIVAGDDLYGGTDR-LLS-----RVTPKTG 118 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g~~al~~~~~~~~---------~-g~-~viv~~~~~~~~~~-~~~-----~~~~~~g 118 (265)
...+.++++.+++|.+.++-.++|.+|......+.+ | .. .|+.....|++... ... +.-+.+|
T Consensus 102 ~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fg 181 (427)
T KOG1402|consen 102 VLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFG 181 (427)
T ss_pred hHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccC
Confidence 456677888888999999999999988864433322 3 22 23333333332210 000 0001122
Q ss_pred e----EEEeecCCCHHHHHhhcC-CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcCC-CCCc----
Q 024619 119 V----VVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIMS-PVLS---- 184 (265)
Q Consensus 119 ~----~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~~-~~~~---- 184 (265)
- .+..++..|.++++.++. ++.++++++..+-..|.+.| +++..++|++||+++|.||++.. +..+
T Consensus 182 p~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la 261 (427)
T KOG1402|consen 182 PFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLA 261 (427)
T ss_pred CCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEE
Confidence 1 134455679999999987 67899999999999998854 89999999999999999999852 2222
Q ss_pred -CCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHHHHHhccCCCChhHHHHHHhccC
Q 024619 185 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 185 -~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
+.....+|+++. .|.++| +-+....+.+.++.+.. ........+.+-+|..+.....+|+
T Consensus 262 ~d~env~PDivil--gKalSG-G~~Pvsavl~~~~im~~-~~pgeHgsTyggNpLg~~vaiAale 322 (427)
T KOG1402|consen 262 CDYENVRPDIVIL--GKALSG-GVYPVSAVLADDDIMLN-IKPGEHGSTYGGNPLGCAVAIAALE 322 (427)
T ss_pred eehhhcCCCeEEE--eccccC-CeeeeEEEEecHHHHhc-cCCCccccccCCChHHHHHHHHHHH
Confidence 222335788874 898854 33555666665554433 3344444444445555555555554
No 370
>PLN02452 phosphoserine transaminase
Probab=98.91 E-value=1.4e-08 Score=88.69 Aligned_cols=152 Identities=15% Similarity=0.072 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec----
Q 024619 55 PTRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN---- 125 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~---- 125 (265)
...+++++.++++++.+ +++++.+| +.++. +++.++.+|+++++....+ +-.-+.+.++..|...+...
T Consensus 52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~--fg~r~~~~a~~~g~~~~~~~~~~~ 129 (365)
T PLN02452 52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGS--WSKKAAKEAKKYCKTNVIASGKDE 129 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCH--HHHHHHHHHHHhCCCcEEEecCCC
Confidence 35888999999999864 35666444 57785 7788999999877654332 33334566677775444331
Q ss_pred ----CCCHHHHHhhcCCCceEEEEecCCCCcccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCcC-CCCCCccEEEeccc
Q 024619 126 ----TCDLDEVASAIGPWTKLVWVESPTNPRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSAT 199 (265)
Q Consensus 126 ----~~d~~~l~~~~~~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~~-~~~~~~di~~~s~s 199 (265)
.+++++++ ..++.+.|.+++....||.. .|++++.+ +++++|.+.+.+..+. ..+++.|+ .|.+
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~~~v~~--~saq 199 (365)
T PLN02452 130 KYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSKYGVIY--AGAQ 199 (365)
T ss_pred CCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHHcCEEE--Eecc
Confidence 23555542 24578899999999999995 78877753 8999999999888763 33445444 6999
Q ss_pred cccccCCCceeeEEEeechhHH
Q 024619 200 KFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~ 221 (265)
|.+ ||+|+ |+++.+++.+.
T Consensus 200 K~l-GP~Gl--~~v~vr~~~l~ 218 (365)
T PLN02452 200 KNV-GPSGV--TIVIIRKDLIG 218 (365)
T ss_pred ccc-CCCCe--EEEEEcHHHHh
Confidence 999 69995 88888887653
No 371
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.91 E-value=2.4e-08 Score=85.26 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=128.0
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh---CCCceEEecchHHH
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD---KADRALCFTSGMAA 82 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~---g~~~~i~~~~g~~a 82 (265)
....++++|.+ +..-+|..+|.+.++....... .....+.|.. -+.-++++.+.+.. ..+.+.+.+||++|
T Consensus 53 ~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k-~~hs~~~~~t---~eav~l~~~l~~~~~~~~~~rvff~nsGTeA 128 (433)
T KOG1401|consen 53 PDGKEYIDFTSSWAVTILGHANPEVARALAEQAKK-LGHSSNGYFT---LEAVELEEVLSAVLGKGSAERVFFCNSGTEA 128 (433)
T ss_pred CCcceeeeeccceeccccCCCCHHHHHHHHHHHhh-heeccCcccc---HHHHHHHHHHHhcccCCCccEEEEecCCcHH
Confidence 44578888844 4445888866655554322211 1111111111 12555666776666 56679999999999
Q ss_pred HHHHHHh----cCC---CC--EEEEcCCCCCChHHHHHhhcCC--CCe-------EEEeecCCCHHHHHhhcCC---Cce
Q 024619 83 LAAVTHL----LGT---GE--EIVAGDDLYGGTDRLLSRVTPK--TGV-------VVKRVNTCDLDEVASAIGP---WTK 141 (265)
Q Consensus 83 l~~~~~~----~~~---g~--~viv~~~~~~~~~~~~~~~~~~--~g~-------~~~~~~~~d~~~l~~~~~~---~~~ 141 (265)
+.+++.+ ... -+ .+|....+|++........... .+. .++.....|..++++.+.. +..
T Consensus 129 ne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~Ia 208 (433)
T KOG1401|consen 129 NETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIA 208 (433)
T ss_pred HHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceE
Confidence 8633332 111 12 3888888887765443232222 222 1233334588899888863 368
Q ss_pred EEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCCCceee
Q 024619 142 LVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAG 211 (265)
Q Consensus 142 ~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~g~~~G 211 (265)
+|+++...--.|.+.. ++.|.++|+++|+++|.||++- .+..+ ......+||.+ +.|.++| |+..|
T Consensus 209 AVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~g--GlPig 284 (433)
T KOG1401|consen 209 AVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITT--VAKPLGG--GLPIG 284 (433)
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCccee--ehhhccC--CceeE
Confidence 9999998876666632 7899999999999999999974 23332 23345688885 5999954 48899
Q ss_pred EEEeechhH
Q 024619 212 VLAVKGERL 220 (265)
Q Consensus 212 ~v~~~~~~~ 220 (265)
+...+++..
T Consensus 285 A~~v~~kV~ 293 (433)
T KOG1401|consen 285 ATGVRDKVA 293 (433)
T ss_pred EEeehHHHH
Confidence 998887644
No 372
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.84 E-value=1.5e-07 Score=84.53 Aligned_cols=191 Identities=13% Similarity=0.065 Sum_probs=115.0
Q ss_pred cceeEeeccCC--CCCCCCCCCCeee--ccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHhC---CCceEEecchHH
Q 024619 9 VSTLLMNFSNE--FDPYGALSTPLYQ--TATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMA 81 (265)
Q Consensus 9 ~~~~~~~~~~~--~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~ 81 (265)
.+.++++|.++ +..+|...|.+.. +..-+....... .........+...++.+.+.++.+ .+.+.+++||++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~-~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsE 121 (443)
T PRK08297 43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALN-KPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGAL 121 (443)
T ss_pred CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhh-ccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHH
Confidence 46788898543 5568999988887 544222211100 000111123556778888888762 346888999999
Q ss_pred HHHHHHHhc---------CC------CCEEEEcCCCCCChHHHHHhhcCC-------CC------eEEEee--cC-----
Q 024619 82 ALAAVTHLL---------GT------GEEIVAGDDLYGGTDRLLSRVTPK-------TG------VVVKRV--NT----- 126 (265)
Q Consensus 82 al~~~~~~~---------~~------g~~viv~~~~~~~~~~~~~~~~~~-------~g------~~~~~~--~~----- 126 (265)
|+...+.+. .. ..+|+....+|++........... .. +....+ +.
T Consensus 122 Ave~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK08297 122 AVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL 201 (443)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence 986433332 01 256888888888875432222110 00 000001 10
Q ss_pred C--------CHHHHHhhcC---CCceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----
Q 024619 127 C--------DLDEVASAIG---PWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR----- 185 (265)
Q Consensus 127 ~--------d~~~l~~~~~---~~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~----- 185 (265)
. +++++++.+. +++.+|+++......|.+. .+++|.++|++||+++|.||++. .|..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~ 281 (443)
T PRK08297 202 EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQ 281 (443)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHH
Confidence 0 1234444453 5789999999888778773 38999999999999999999984 444331
Q ss_pred CCCCCccEEEecccccc
Q 024619 186 PLELGADIVMHSATKFI 202 (265)
Q Consensus 186 ~~~~~~di~~~s~sK~~ 202 (265)
.....+|+++ ++|.+
T Consensus 282 ~~gv~PDiv~--~gK~l 296 (443)
T PRK08297 282 QLGVRPDIVA--FGKKT 296 (443)
T ss_pred hcCCCCCEEE--ecccc
Confidence 2234689885 69987
No 373
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.82 E-value=6.4e-08 Score=83.95 Aligned_cols=151 Identities=14% Similarity=0.059 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhHhCCC---ceEEecch-HHHHH-HHHHhcCCCCEEE--EcCCCCCChHHHHHhhcCCCCeEEEeec---
Q 024619 56 TRDALESLLAKLDKAD---RALCFTSG-MAALA-AVTHLLGTGEEIV--AGDDLYGGTDRLLSRVTPKTGVVVKRVN--- 125 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~---~~i~~~~g-~~al~-~~~~~~~~g~~vi--v~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 125 (265)
..+++++.++++++.+ +++++++| +.++. +.+.++++|++++ +....| -.-|...++..| ++..+.
T Consensus 50 i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~f---g~r~~~ea~~~g-~v~~~~~~~ 125 (364)
T PRK12462 50 LLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYW---SRKAIGEASRVA-AMRVVWDGA 125 (364)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHH---HHHHHHHHHhcC-CceEecCcC
Confidence 4788999999999873 36666665 47776 7788999999654 444444 223345556665 333332
Q ss_pred ------CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEeccc
Q 024619 126 ------TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 199 (265)
Q Consensus 126 ------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~s 199 (265)
.++++++ .+.++.+.|.+++....+|...+ ++.+.++.++|+|.+.+.+..+...+ +.|+++.+..
T Consensus 126 ~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~-~~dvi~agsQ 197 (364)
T PRK12462 126 ASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVE-AYGMVYAHAQ 197 (364)
T ss_pred CCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChH-HccEEEeecc
Confidence 2244554 23456888999998889999986 33334689999999988766653333 2599999999
Q ss_pred cccccCCCceeeEEEeechhHH
Q 024619 200 KFIAGHSDVMAGVLAVKGERLA 221 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~ 221 (265)
|.++ |+|+ ++++.+++.+.
T Consensus 198 Knlg-P~Gl--tvvivs~~al~ 216 (364)
T PRK12462 198 KNLG-PAGV--TVAIIRRALLE 216 (364)
T ss_pred ccCC-CCce--EEEEECHHHHh
Confidence 9995 9996 78888887653
No 374
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.81 E-value=1.1e-07 Score=85.11 Aligned_cols=191 Identities=12% Similarity=0.052 Sum_probs=112.5
Q ss_pred cceeEeeccC--CCCCCCCCCCCee--eccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh---CCCceEEecchHH
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLY--QTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD---KADRALCFTSGMA 81 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~---g~~~~i~~~~g~~ 81 (265)
.+.++|+|.+ ++..+|...|.+. .+..-+..... .....+.....+...++.+++.++. +.+.+.+.+||++
T Consensus 36 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsE 114 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAA-VNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGAL 114 (431)
T ss_pred CCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhh-hcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHH
Confidence 4567888854 3455898888887 44332221110 0001111123455667777777764 2346788899999
Q ss_pred HHHHHHHhcC---------C------CCEEEEcCCCCCChHHHHHhhcCCCCeE-------------EEe--ecC-----
Q 024619 82 ALAAVTHLLG---------T------GEEIVAGDDLYGGTDRLLSRVTPKTGVV-------------VKR--VNT----- 126 (265)
Q Consensus 82 al~~~~~~~~---------~------g~~viv~~~~~~~~~~~~~~~~~~~g~~-------------~~~--~~~----- 126 (265)
|+.+.+.+.. . +.+|+....+|++............... ... .+.
T Consensus 115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 194 (431)
T TIGR03251 115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL 194 (431)
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence 9863333220 1 3678888888887753321211110000 000 010
Q ss_pred C--------CHHHHHhhc---CCCceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCc-----C
Q 024619 127 C--------DLDEVASAI---GPWTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLS-----R 185 (265)
Q Consensus 127 ~--------d~~~l~~~~---~~~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~ 185 (265)
. +++++++.+ .+++.+|+++......|.+. .+++|.++|++||+++|+||++. .|..+ .
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~ 274 (431)
T TIGR03251 195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQ 274 (431)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHH
Confidence 0 133344444 36789999999988888774 38999999999999999999986 34332 1
Q ss_pred CCCCCccEEEecccccc
Q 024619 186 PLELGADIVMHSATKFI 202 (265)
Q Consensus 186 ~~~~~~di~~~s~sK~~ 202 (265)
.....+|+++ ++|.+
T Consensus 275 ~~gv~PDi~~--~gK~~ 289 (431)
T TIGR03251 275 QLGVQPDIVA--FGKKT 289 (431)
T ss_pred hcCCCCCEEE--ecccC
Confidence 2234689885 58876
No 375
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.81 E-value=5.9e-08 Score=87.12 Aligned_cols=189 Identities=16% Similarity=0.109 Sum_probs=113.5
Q ss_pred cceeEeeccC--CCCCCCCCCCCeeecccccc-CCCCCCCCCccCCCCChhHHHHHHHHHh----HhC--CCceEEecch
Q 024619 9 VSTLLMNFSN--EFDPYGALSTPLYQTATFKQ-PSATENGPYDYTRSGNPTRDALESLLAK----LDK--ADRALCFTSG 79 (265)
Q Consensus 9 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~y~~~g~~~~~~l~~~l~~----~~g--~~~~i~~~~g 79 (265)
.+.++++|.+ ++..+|...|.+.++...+. .... .+.. ...++...++.+.+.+ +.. .+.+.+.+||
T Consensus 56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l---~~~~-~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SG 131 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTL---INRP-ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSG 131 (464)
T ss_pred CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhh---cccc-cCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCc
Confidence 4568899864 45558988888888865321 1100 0111 1244445566666543 442 3467888899
Q ss_pred HHHHHHHHHhc----C-----------------------C---CCEEEEcCCCCCChHHHHHhhcCCC-----Ce---EE
Q 024619 80 MAALAAVTHLL----G-----------------------T---GEEIVAGDDLYGGTDRLLSRVTPKT-----GV---VV 121 (265)
Q Consensus 80 ~~al~~~~~~~----~-----------------------~---g~~viv~~~~~~~~~~~~~~~~~~~-----g~---~~ 121 (265)
++|+.+.+.+. . + ..+|+....+|++............ +. .+
T Consensus 132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~ 211 (464)
T TIGR00699 132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW 211 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence 99986333322 0 1 1268888888888764422221110 11 11
Q ss_pred EeecCC-------------------CHHHHHhhcC---CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEe
Q 024619 122 KRVNTC-------------------DLDEVASAIG---PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 122 ~~~~~~-------------------d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D 175 (265)
..+|.+ +++.+++.+. .++.+|+++......|.+.+ ++++.++|++||+++|+|
T Consensus 212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~D 291 (464)
T TIGR00699 212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVD 291 (464)
T ss_pred eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 111111 2344555553 46899999999888888876 899999999999999999
Q ss_pred CCcC-CCCCcC-----CCCC--CccEEEeccccccc
Q 024619 176 NSIM-SPVLSR-----PLEL--GADIVMHSATKFIA 203 (265)
Q Consensus 176 ~~~~-~~~~~~-----~~~~--~~di~~~s~sK~~~ 203 (265)
|++. .|..+. .... .+|++ +++|.++
T Consensus 292 EV~tGfGrtG~~fa~e~~gv~~~PDi~--t~gK~lg 325 (464)
T TIGR00699 292 EVQTGVGATGKFWAHEHWNLDDPPDMV--TFSKKFQ 325 (464)
T ss_pred eeeeCCCCCcchhHHHhcCCCCCCCEE--Eehhhhc
Confidence 9973 332221 1122 38886 5699984
No 376
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=98.74 E-value=9.1e-08 Score=81.34 Aligned_cols=232 Identities=16% Similarity=0.105 Sum_probs=127.6
Q ss_pred CcceeEeeccC--CCCCCCCCCCCeeeccccccCCCCCCCCCccCCCCChhHHHHHHHHHhHh-CC-CceEEecchHHHH
Q 024619 8 GVSTLLMNFSN--EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD-KA-DRALCFTSGMAAL 83 (265)
Q Consensus 8 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~l~~~l~~~~-g~-~~~i~~~~g~~al 83 (265)
..+.++++|-. ..-.+|.+.|.+..+...+.... -.....| -++-..++++.|.+.+ +. +.+.+++||++|.
T Consensus 47 e~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l-~H~t~~~---~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEAN 122 (442)
T KOG1404|consen 47 EEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKL-YHTTSGY---LNPPIHDLAEALVSKLPGDLKVVFFVNSGSEAN 122 (442)
T ss_pred CCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhh-EEeeccc---cCCcHHHHHHHHHHhCCCCceEEEEecCCchHH
Confidence 34456666521 33447887777777765443221 1111111 2233455555555554 32 2577888899998
Q ss_pred HHHHH---hcCCCCEEEEcCCCCCChHHHHHhhcCCC-----------CeEEEeecCC-------C---------HHHHH
Q 024619 84 AAVTH---LLGTGEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRVNTC-------D---------LDEVA 133 (265)
Q Consensus 84 ~~~~~---~~~~g~~viv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~-------d---------~~~l~ 133 (265)
.+.+. +....-.+|-...+|++.......+.... |......|.+ + .++++
T Consensus 123 elal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~ 202 (442)
T KOG1404|consen 123 ELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELE 202 (442)
T ss_pred HHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHH
Confidence 53322 23333467777778876643211111111 1111111100 1 13333
Q ss_pred hhcC----CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcC-----CCCCCccEEEeccc
Q 024619 134 SAIG----PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSAT 199 (265)
Q Consensus 134 ~~~~----~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~-----~~~~~~di~~~s~s 199 (265)
+.+. +.+++++.+..+...|.+.+ +++.-++|+++|.++|.||++. +|..+. ..+.-+||+ |++
T Consensus 203 d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmA 280 (442)
T KOG1404|consen 203 DLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMA 280 (442)
T ss_pred HHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHH--HHH
Confidence 3332 45778899999988888853 7999999999999999999985 343332 112235776 789
Q ss_pred cccccCCCceeeEEEeechhHHHHHHH-HHHhccCCCChhHHHHHHhccC
Q 024619 200 KFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 200 K~~~g~~g~~~G~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
|.+++ |...|.++..++ +.+.+.. .+...+..-.|..++..+..|+
T Consensus 281 KgiGn--G~Pl~AVvtt~E-Ia~v~~~~~~~fnTyggnP~a~avg~aVL~ 327 (442)
T KOG1404|consen 281 KGIGN--GFPLGAVVTTPE-IADVLNQKSSHFNTYGGNPVACAVGLAVLK 327 (442)
T ss_pred hhccC--CCcceeeecCHH-HHHHHHhccccccccCCCchhHHHHHHHHH
Confidence 99953 366788877664 4443332 2234444445555555444444
No 377
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=98.70 E-value=2e-07 Score=82.04 Aligned_cols=232 Identities=15% Similarity=0.091 Sum_probs=133.0
Q ss_pred ceeEeec--cCCCCCCCCCCCCeeeccccccCCCCCCCCC-ccCCCCChhHHHHHHHHHhHhC---CCceEEecchHHHH
Q 024619 10 STLLMNF--SNEFDPYGALSTPLYQTATFKQPSATENGPY-DYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAAL 83 (265)
Q Consensus 10 ~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~y~~~g~~~~~~l~~~l~~~~g---~~~~i~~~~g~~al 83 (265)
+.++++- |+++...|...+.+..+...+..+. ..+ .+.-++.| ..+|+++|+++.. .+.+.+.+||++|+
T Consensus 43 G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l---~~~~~~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAv 118 (449)
T COG0161 43 GRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKL---PHVMFGGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAV 118 (449)
T ss_pred CCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhC---CchhhcccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHH
Confidence 3455554 3356667777777777765443321 111 22222557 8899999999986 34677778889998
Q ss_pred HHHHHh-c-------CCC-CEEEEcCCCCCChHHHHHhhcC----------CCCeEEEeecCC-----------C-----
Q 024619 84 AAVTHL-L-------GTG-EEIVAGDDLYGGTDRLLSRVTP----------KTGVVVKRVNTC-----------D----- 128 (265)
Q Consensus 84 ~~~~~~-~-------~~g-~~viv~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~-----------d----- 128 (265)
.+.+.+ . +|. .++|.-..+|++.....-.+.. ..-..+..++.+ +
T Consensus 119 EtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~ 198 (449)
T COG0161 119 ETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE 198 (449)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHH
Confidence 644332 1 232 3477777888766422111111 000011122211 1
Q ss_pred -HHHHHhhcC----CCceEEEEecCCCC-cccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcC-----CCCCCcc
Q 024619 129 -LDEVASAIG----PWTKLVWVESPTNP-RQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGAD 192 (265)
Q Consensus 129 -~~~l~~~~~----~~~~~i~~~~~~np-~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~-----~~~~~~d 192 (265)
.+++++.+. +++.+++++....- .|.+.+ ++++.++|++||+++|.||+- ++|-.+. -....+|
T Consensus 199 ~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PD 278 (449)
T COG0161 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPD 278 (449)
T ss_pred HHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCC
Confidence 344555543 56889999987766 566643 799999999999999999995 3444432 2234579
Q ss_pred EEEeccccccccCCCceeeEEEeechhHHHHHHHH-H--HhccC--CCChhHHHHHHhccCc
Q 024619 193 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q--NAEGS--GLAPFDCWICLRGVKT 249 (265)
Q Consensus 193 i~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~l~~ 249 (265)
|++ ++|.+.+ +-+..|.++++++ +.+.+..- . ...+. .-.|..++..++.|+-
T Consensus 279 i~~--~aKGLT~-GY~Pl~a~l~~~~-I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i 336 (449)
T COG0161 279 ILC--LAKGLTG-GYLPLSAVLTSDR-IYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDI 336 (449)
T ss_pred eee--ecccccc-cchhhHhHhhhHH-HHHHHhcccCCeeccCCccccCHHHHHHHHHHHHH
Confidence 985 5898843 4455666655554 43422221 1 11222 2336777776666654
No 378
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=98.63 E-value=5.7e-08 Score=87.26 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=124.6
Q ss_pred CCCCCCCCCCCeeeccccccCCCCCCCCCccCCC------CChh-HHHHHHHHHhHhCCC--ceEEecchHHHH-HHHHH
Q 024619 19 EFDPYGALSTPLYQTATFKQPSATENGPYDYTRS------GNPT-RDALESLLAKLDKAD--RALCFTSGMAAL-AAVTH 88 (265)
Q Consensus 19 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~------g~~~-~~~l~~~l~~~~g~~--~~i~~~~g~~al-~~~~~ 88 (265)
+-.|++..-|+.+++..+..+ .+..+|+++ |+.+ .-..+..++++.|.+ +.-++.-|++|- +..+.
T Consensus 124 GmGYyn~~vP~~I~RNilenp----~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~ 199 (1001)
T KOG2040|consen 124 GMGYYNTHVPAVILRNILENP----GWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALC 199 (1001)
T ss_pred ccccccccCcHHHHHHhhhCC----cceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHH
Confidence 344777777777777654433 366677777 3332 445667778888877 577777787554 33333
Q ss_pred h-cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH
Q 024619 89 L-LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA 167 (265)
Q Consensus 89 ~-~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~ 167 (265)
. ..++.+.+++..+|+.....++..++-+|+++...+ +++... ..+++..+++-.|.. .|.+.|..++++.+++
T Consensus 200 ~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---~~~~~~-s~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~ 274 (1001)
T KOG2040|consen 200 NRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---IKEADY-SSKDVSGVLVQYPDT-EGSVLDFDELVELAHA 274 (1001)
T ss_pred HhhcccceEEecCCCCcchhhhhhccccccceeEEecC---HHHhhc-cccceeEEEEEcCCC-CCcccCHHHHHHHhhc
Confidence 3 566777999999999999888777788888865444 333322 234688889888854 7999999999999999
Q ss_pred cCCEEEEe-CCcCCCCCcCCCCCCccEEEecccc
Q 024619 168 HGALLLVD-NSIMSPVLSRPLELGADIVMHSATK 200 (265)
Q Consensus 168 ~~~~li~D-~~~~~~~~~~~~~~~~di~~~s~sK 200 (265)
.|..++.- +-.+.-.+..|.++|.||.++|...
T Consensus 275 ~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQR 308 (1001)
T KOG2040|consen 275 NGSLVVMATDLLALTILRPPGEFGADIAVGSSQR 308 (1001)
T ss_pred cCceEEEeehhhHHHccCChhhcCceeeeccccc
Confidence 98876543 5456666778999999999999887
No 379
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=98.61 E-value=8.3e-08 Score=79.22 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=120.3
Q ss_pred HHHHHHHhHhCCC-ceEEecch-HHHHH-HHHHhcCC---CCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-------
Q 024619 59 ALESLLAKLDKAD-RALCFTSG-MAALA-AVTHLLGT---GEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN------- 125 (265)
Q Consensus 59 ~l~~~l~~~~g~~-~~i~~~~g-~~al~-~~~~~~~~---g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~------- 125 (265)
-+-..++.+.|+. +.+.+.+. +..++ ++.++.+| .-+|+.+.-+|++-...+..-++..|+.+...=
T Consensus 115 ~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePRE 194 (465)
T KOG3846|consen 115 PILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPRE 194 (465)
T ss_pred hhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccc
Confidence 3445556666766 45555554 45565 67778877 346999999999998888888888887754321
Q ss_pred ---CCCHHHHHhhcC---CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCc-CCCCCCccEEEecc
Q 024619 126 ---TCDLDEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSA 198 (265)
Q Consensus 126 ---~~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~-~~~~~~~di~~~s~ 198 (265)
....+++.+-+. ...++|+++..+.-||+..|+.+|...-+..|+++-+|-+|+.|..+ ..-++++|+.+...
T Consensus 195 GEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCS 274 (465)
T KOG3846|consen 195 GEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCS 274 (465)
T ss_pred cccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEee
Confidence 113455555554 45788999999999999999999998888889999999999999887 34578999999999
Q ss_pred ccccccCCCceeeEEEeec
Q 024619 199 TKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~ 217 (265)
.|++++.+|-++|..+..+
T Consensus 275 YKYlnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 275 YKYLNAGAGGIGGLFVHEK 293 (465)
T ss_pred ecccccCCCccceeeeehh
Confidence 9999977777788776544
No 380
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.61 E-value=6.7e-07 Score=85.23 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=68.7
Q ss_pred CCceEEEEecC-CCCcccccc----HHHHHHHHHHcCCEEEEeCCcC-CCCCc-----CCCCCCccEEEeccccccccCC
Q 024619 138 PWTKLVWVESP-TNPRQQICD----IRKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHS 206 (265)
Q Consensus 138 ~~~~~i~~~~~-~np~G~~~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~-----~~~~~~~di~~~s~sK~~~g~~ 206 (265)
+++.+|+++.. +.-.|.+.+ ++.+.++|++||+++|.||++. .|-.+ +.....+||++ ++|.++|.
T Consensus 583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~--~gKgLtgG- 659 (817)
T PLN02974 583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIAC--YAKLLTGG- 659 (817)
T ss_pred CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEe--ecccccCC-
Confidence 46889999984 666677743 7999999999999999999974 33333 22344689996 59998542
Q ss_pred CceeeEEEeechhHHHHHHH------HHHhccCCCChhHHHHHHhccCc
Q 024619 207 DVMAGVLAVKGERLAKELYF------LQNAEGSGLAPFDCWICLRGVKT 249 (265)
Q Consensus 207 g~~~G~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~ 249 (265)
-+..|.++++++ +.+.+.. +.......-+|..++..++.|+.
T Consensus 660 ~~Plaa~l~~~~-I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~ 707 (817)
T PLN02974 660 LVPLAATLATEE-VFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQW 707 (817)
T ss_pred CCccEEEEEcHH-HHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 135677777664 4443321 11122233446666665555543
No 381
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=98.47 E-value=1.7e-06 Score=77.99 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=115.5
Q ss_pred CCccCCC----CCh-hHHHHHHHHHhHhCCCc-eEEecchHHH----HHHHHHhc-CCCC----EEEEcCCCCCChHHHH
Q 024619 46 PYDYTRS----GNP-TRDALESLLAKLDKADR-ALCFTSGMAA----LAAVTHLL-GTGE----EIVAGDDLYGGTDRLL 110 (265)
Q Consensus 46 ~~~y~~~----g~~-~~~~l~~~l~~~~g~~~-~i~~~~g~~a----l~~~~~~~-~~g~----~viv~~~~~~~~~~~~ 110 (265)
...|.+. |+. ..+++++.++++.|.|. .+-.++|+++ +.++++.. .+|+ .-+++.-+|....
T Consensus 568 IHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNP--- 644 (1001)
T KOG2040|consen 568 IHPFAPVEQAQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNP--- 644 (1001)
T ss_pred CCCCCchHHHhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCCh---
Confidence 3445555 554 48899999999999995 5556667544 45566543 3333 3456777787776
Q ss_pred HhhcCCCCeEEEeecCC-----CHHHHHhhcC---CCceEEEEecCCCCccccc-cHHHHHHHHHHcCCEEEEeCCcCCC
Q 024619 111 SRVTPKTGVVVKRVNTC-----DLDEVASAIG---PWTKLVWVESPTNPRQQIC-DIRKIAEMAHAHGALLLVDNSIMSP 181 (265)
Q Consensus 111 ~~~~~~~g~~~~~~~~~-----d~~~l~~~~~---~~~~~i~~~~~~np~G~~~-~l~~i~~~a~~~~~~li~D~~~~~~ 181 (265)
..+...|.+++.|..+ |..++++... ++..+++++.|+. .|... .+++++++.++||.-+..|++.--.
T Consensus 645 -ASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNA 722 (1001)
T KOG2040|consen 645 -ASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNA 722 (1001)
T ss_pred -hhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccc
Confidence 6678899999998865 6777776654 5678999999966 57774 6999999999999999999986443
Q ss_pred C--CcCCCCCCccEEEeccccccccCC
Q 024619 182 V--LSRPLELGADIVMHSATKFIAGHS 206 (265)
Q Consensus 182 ~--~~~~~~~~~di~~~s~sK~~~g~~ 206 (265)
. +..|.+.|.|+.--.++|+|+-|.
T Consensus 723 qVGlc~pGd~GaDV~HLNLHKTFcIPH 749 (1001)
T KOG2040|consen 723 QVGLCRPGDIGADVCHLNLHKTFCIPH 749 (1001)
T ss_pred eecccCCccccccceeecccceeeecC
Confidence 3 346889999999999999886443
No 382
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.29 E-value=5.7e-06 Score=71.42 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=95.2
Q ss_pred HHHhHhCCC---ceEEecchH-HHHH-HHHHhc--CCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--------
Q 024619 63 LLAKLDKAD---RALCFTSGM-AALA-AVTHLL--GTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-------- 127 (265)
Q Consensus 63 ~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~--~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------- 127 (265)
.+-+..|.. .+++++-.+ +++. +++++- ..++.|+.+.-.+-+-. .+....|.+++.++..
T Consensus 64 d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~----kai~~AGl~~~vV~~~~~~d~l~t 139 (389)
T PF05889_consen 64 DALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCF----KAIERAGLEPVVVENVLEGDELIT 139 (389)
T ss_dssp HHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHH----HHHHHTT-EEEEE-EEEETTEEEE
T ss_pred HHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchH----HHHHhcCCeEEEeeccCCCCeeec
Confidence 333445654 467776655 5554 444442 45788998887765554 4556679998888731
Q ss_pred CHHHHHhhcC---CCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCC-CccEEEe
Q 024619 128 DLDEVASAIG---PWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-GADIVMH 196 (265)
Q Consensus 128 d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~-~~di~~~ 196 (265)
|.+.+++.+. ++..+.+++.++..-+...| +++|.++|+++|++.++-.+|+.-... ..... ..|+.+.
T Consensus 140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vq 219 (389)
T PF05889_consen 140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQ 219 (389)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEE
T ss_pred cHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeee
Confidence 4566666553 55677788888888888887 999999999999999999999863221 11122 3689999
Q ss_pred ccccccccCCCceeeEEEeechh
Q 024619 197 SATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 197 s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
|+.|.|..|.| ++.+...++.
T Consensus 220 S~dkNF~VPvG--gai~As~~~~ 240 (389)
T PF05889_consen 220 STDKNFMVPVG--GAIMASFDPS 240 (389)
T ss_dssp EHHHHHCEESS--HEEEEESSHH
T ss_pred ecCCCEEecCC--CcEEEecCHH
Confidence 99998888876 4566555543
No 383
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.25 E-value=2.1e-05 Score=66.71 Aligned_cols=157 Identities=22% Similarity=0.227 Sum_probs=98.5
Q ss_pred CChhHHHHHHH----HHhHhCCC---c--eEEecchHHH-HHHHHHhcCCCCEEEE-cCC--CCCChHHHHHhhcCCCCe
Q 024619 53 GNPTRDALESL----LAKLDKAD---R--ALCFTSGMAA-LAAVTHLLGTGEEIVA-GDD--LYGGTDRLLSRVTPKTGV 119 (265)
Q Consensus 53 g~~~~~~l~~~----l~~~~g~~---~--~i~~~~g~~a-l~~~~~~~~~g~~viv-~~~--~~~~~~~~~~~~~~~~g~ 119 (265)
|+...++++.. .-+.|+.+ . .+-.-||+.| +.+..++++|+++|+- +-| .|-+.-.. .-.+....
T Consensus 80 Gne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~--T~~kkISa 157 (477)
T KOG2467|consen 80 GNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ--TPTKKISA 157 (477)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc--cCCceeee
Confidence 55445554433 33557766 1 3444577755 5688899999999883 333 33222100 11122122
Q ss_pred EEEeec-----------CCCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC-----CCC
Q 024619 120 VVKRVN-----------TCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM-----SPV 182 (265)
Q Consensus 120 ~~~~~~-----------~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~-----~~~ 182 (265)
.-+++. ..|.|.+++... =++++|+- ..+. --...|...+.++|.+.|++++.|.+|- .+.
T Consensus 158 ~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iia-G~Sa-Y~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~v 235 (477)
T KOG2467|consen 158 TSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIA-GTSA-YSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGV 235 (477)
T ss_pred eeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEe-cccc-chhhccHHHHHHHHHhcCceeehhhhhHHHHHhccc
Confidence 222221 127788877654 35665553 3322 1245788999999999999999999984 455
Q ss_pred CcCCCCCCccEEEeccccccccCCCceeeEEEeec
Q 024619 183 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG 217 (265)
Q Consensus 183 ~~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~ 217 (265)
+++|.+. .||+..+.+|.+-||. +|+|..++
T Consensus 236 ipsPFey-~DiVTTTTHKsLRGPR---g~mIFyRk 266 (477)
T KOG2467|consen 236 IPSPFEY-CDIVTTTTHKSLRGPR---GAMIFYRK 266 (477)
T ss_pred CCCcccc-cceeeccccccccCCc---ceeEEEec
Confidence 6678777 8999999999999885 58887775
No 384
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=98.18 E-value=3.3e-05 Score=64.22 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=87.2
Q ss_pred eEEecchHHHHHH----HHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC----eEEEeecC----CCHHHHHhhcCCC-
Q 024619 73 ALCFTSGMAALAA----VTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG----VVVKRVNT----CDLDEVASAIGPW- 139 (265)
Q Consensus 73 ~i~~~~g~~al~~----~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g----~~~~~~~~----~d~~~l~~~~~~~- 139 (265)
.+-.-||+.|+.+ +..+++ ...|.+++|+|......+ +..| ....+++. .|.+.+...+...
T Consensus 102 ~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if----~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP 176 (410)
T KOG1412|consen 102 GVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIF----EKAGFTTVATYPYWDAENKCVDLEGFLSDLESAP 176 (410)
T ss_pred ceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHH----HHcCCceeeeeeeecCCCceecHHHHHHHHhhCC
Confidence 3444567777643 233344 566999999999987544 5555 23334442 3888888887632
Q ss_pred -ceEEEEecC-CCCcccccc---HHHHHHHHHHcCCEEEEeCCcCCCCCcCCC----------CCCc-cEEEeccccccc
Q 024619 140 -TKLVWVESP-TNPRQQICD---IRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELGA-DIVMHSATKFIA 203 (265)
Q Consensus 140 -~~~i~~~~~-~np~G~~~~---l~~i~~~a~~~~~~li~D~~~~~~~~~~~~----------~~~~-di~~~s~sK~~~ 203 (265)
-.++++..+ |||||.-.- -.+|++..++.+.+.++|-+|-..+.+++. +.+. -+++.||+|.+
T Consensus 177 e~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNf- 255 (410)
T KOG1412|consen 177 EGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNF- 255 (410)
T ss_pred CCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhc-
Confidence 334555554 899997643 357888888899999999998544444332 1222 48999999988
Q ss_pred cCCCceeeE
Q 024619 204 GHSDVMAGV 212 (265)
Q Consensus 204 g~~g~~~G~ 212 (265)
|.-+=|.|.
T Consensus 256 GlYneRvGn 264 (410)
T KOG1412|consen 256 GLYNERVGN 264 (410)
T ss_pred ccccccccc
Confidence 444556664
No 385
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=98.08 E-value=2.9e-05 Score=67.85 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=107.5
Q ss_pred HHHHHHHHHhHhCCC-c--eEEecchHHH-HHHHHH---h-cC-CC-C--EEEEcCCCCCChHHHHHhhcCCCCeEEEee
Q 024619 57 RDALESLLAKLDKAD-R--ALCFTSGMAA-LAAVTH---L-LG-TG-E--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRV 124 (265)
Q Consensus 57 ~~~l~~~l~~~~g~~-~--~i~~~~g~~a-l~~~~~---~-~~-~g-~--~viv~~~~~~~~~~~~~~~~~~~g~~~~~~ 124 (265)
..+....++.+++.+ + ...+++|+++ +..-.. . .+ +| + .++..... ...|...++.+++++..+
T Consensus 122 e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v----~~a~eK~a~yf~v~l~~V 197 (491)
T KOG1383|consen 122 EAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNV----HAAFEKAARYFEVELREV 197 (491)
T ss_pred HHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHH----HHHHHHHHhhEEEEEEee
Confidence 445556677777655 2 2344445666 322221 1 11 12 1 23333323 334568888899999999
Q ss_pred cCC------CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHH-cCCEEEEeCCcCCCCCc--C----CCCC--
Q 024619 125 NTC------DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHA-HGALLLVDNSIMSPVLS--R----PLEL-- 189 (265)
Q Consensus 125 ~~~------d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~-~~~~li~D~~~~~~~~~--~----~~~~-- 189 (265)
+++ |+.++.+.+++++.+++.+-|+.|+|.+.|+++|.++..+ +++++.+|.+-+....+ . +.+.
T Consensus 198 ~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~ 277 (491)
T KOG1383|consen 198 PLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRV 277 (491)
T ss_pred eccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCC
Confidence 876 8999999999999999999999999999999999999999 99999999997643331 1 1111
Q ss_pred -CccEEEeccccccccCCCceeeEEEeechhH
Q 024619 190 -GADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 190 -~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
++.=+..+.||+-..|.|+ ++++-+++.+
T Consensus 278 p~V~Sisa~~HKYGl~~~G~--~~vl~r~k~~ 307 (491)
T KOG1383|consen 278 PGVTSISADGHKYGLAPAGS--SWVLYRNKEL 307 (491)
T ss_pred CCceeEeeccceeeeeecCc--EEEEEccccc
Confidence 2334666789987789985 6655555443
No 386
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=97.99 E-value=6e-05 Score=65.21 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCCccCCC-CCh-hHHHHHHHHHhHhCCC---ceEEecchH-HHHHHHHHh---c-----CCC-----CEEE-EcCCCCC
Q 024619 45 GPYDYTRS-GNP-TRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHL---L-----GTG-----EEIV-AGDDLYG 104 (265)
Q Consensus 45 ~~~~y~~~-g~~-~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~~~~~~---~-----~~g-----~~vi-v~~~~~~ 104 (265)
..+.|.-. .-- .-+++-..+.+..|-+ +.|+.++|+ +.+.++... . ..| +-|+ .++-+|.
T Consensus 129 n~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHY 208 (510)
T KOG0629|consen 129 NMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHY 208 (510)
T ss_pred CCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchh
Confidence 34555444 222 2555666677776533 688888888 555443322 1 112 2344 4666776
Q ss_pred ChHHHHHhhcCCCC---eEEEeecCC-----CHHHHHhhcC---CC---ceEEEEecCCCCccccccHHHHHHHHHHcCC
Q 024619 105 GTDRLLSRVTPKTG---VVVKRVNTC-----DLDEVASAIG---PW---TKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170 (265)
Q Consensus 105 ~~~~~~~~~~~~~g---~~~~~~~~~-----d~~~l~~~~~---~~---~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~ 170 (265)
+.. ..+...| -.++.++.+ +++++++.+. .+ +..|..+.-...-|...|++.|+++|++|++
T Consensus 209 Si~----kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~l 284 (510)
T KOG0629|consen 209 SIK----KAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKL 284 (510)
T ss_pred hHH----HHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCE
Confidence 665 3334444 455556544 6777777764 23 4556666666677888999999999999999
Q ss_pred EEEEeCCcCCCCCcCCC-------CCCccEEEeccccccccCCCceeeEEEeechh
Q 024619 171 LLLVDNSIMSPVLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGER 219 (265)
Q Consensus 171 ~li~D~~~~~~~~~~~~-------~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~ 219 (265)
++++|.+++.|.+-+.. -...+-+..+.||++++| ++++....+.+.
T Consensus 285 WmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap--lqCsa~l~r~~g 338 (510)
T KOG0629|consen 285 WMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP--LQCSAFLTREEG 338 (510)
T ss_pred EEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc--chhhHHHHHHHH
Confidence 99999999987764221 223678888999999655 567776666544
No 387
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=97.97 E-value=8.9e-06 Score=67.25 Aligned_cols=176 Identities=17% Similarity=0.164 Sum_probs=101.4
Q ss_pred HhHhCCCceEEecchHHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHhhcCCC-----------CeEEEee-cCC--
Q 024619 65 AKLDKADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLSRVTPKT-----------GVVVKRV-NTC-- 127 (265)
Q Consensus 65 ~~~~g~~~~i~~~~g~~al~~~~~~---~~~g~~viv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~-~~~-- 127 (265)
+.+-+.+-+++++||++|..+.+.+ +.+...||+.+.+|++.... ..+.. .-+++++ |.+
T Consensus 97 stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s---~mE~SPYKF~~g~~v~kpd~VHVAPcPDv 173 (452)
T KOG1403|consen 97 STLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQS---VMEVSPYKFNQGGGVAKPDYVHVAPCPDV 173 (452)
T ss_pred hcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceee---eeeccceeccCCCCcCCCceeEecCCccc
Confidence 3334555688999999997544443 33444566667778766421 11211 1122222 211
Q ss_pred -------------C-----HHHHHhhcC------CCceEEEEecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-
Q 024619 128 -------------D-----LDEVASAIG------PWTKLVWVESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI- 178 (265)
Q Consensus 128 -------------d-----~~~l~~~~~------~~~~~i~~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~- 178 (265)
| .+.+++.+. .++.+.+.++-++-.|++.| .+++.+..+.+|.+.|.||++
T Consensus 174 yrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQv 253 (452)
T KOG1403|consen 174 YRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQV 253 (452)
T ss_pred cccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhh
Confidence 1 122333221 35667777888888888865 689999999999999999997
Q ss_pred CCCCCcC------CCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH--HHHhccCCCChhHHHHHHhccC
Q 024619 179 MSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVK 248 (265)
Q Consensus 179 ~~~~~~~------~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 248 (265)
++|.++. ....=+||+ ++.|-++ . |-..+.++..+ ++.+.+.. +.+....+-+|..++..+.-|+
T Consensus 254 GFGRvG~hyWafq~y~fiPDIV--tmgKpmG-N-GhPVa~Vattk-eIA~Af~atgv~YFNTyGGnPVsCAv~laVm~ 326 (452)
T KOG1403|consen 254 GFGRVGSHYWAFQTYNFIPDIV--TMGKPMG-N-GHPVAAVATTK-EIAQAFHATGVEYFNTYGGNPVSCAVGLAVMR 326 (452)
T ss_pred cccccchhhhhhhhhccccchh--eecccCC-C-CCeeeEEeccH-HHHHHhccccceehhccCCCchhHHHHHHHHH
Confidence 3454442 112335777 5688884 2 34578887665 45443332 2233334455666666554444
No 388
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=97.96 E-value=4.3e-05 Score=64.82 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchHHHHH-HHHHh-----cCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC-
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL-----LGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC- 127 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~~al~-~~~~~-----~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 127 (265)
.....|++.+++.+|-+..+.+..|..|=. ++..+ ..||.+.++.+..|..+. +...+.+|..++.++.+
T Consensus 79 rs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTT---r~h~~~ng~~~~n~~~~e 155 (471)
T COG3033 79 RSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTT---RGHIQINGATPRNVYVDE 155 (471)
T ss_pred ccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecch---hHHHHhcCCccccccccc
Confidence 456788888999999988888888865533 22222 345656666666665554 35567788888776643
Q ss_pred --------------CHHHHHhhcC----CCceEEEEecCCCCcc-cc---ccHHHHHHHHHHcCCEEEEeCCcC-CCCCc
Q 024619 128 --------------DLDEVASAIG----PWTKLVWVESPTNPRQ-QI---CDIRKIAEMAHAHGALLLVDNSIM-SPVLS 184 (265)
Q Consensus 128 --------------d~~~l~~~~~----~~~~~i~~~~~~np~G-~~---~~l~~i~~~a~~~~~~li~D~~~~-~~~~~ 184 (265)
|++.+++.+. +++..|++.-.+|..| +- ..++++.++|++|+++++.|.+.. .-++.
T Consensus 156 a~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYF 235 (471)
T COG3033 156 AFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYF 235 (471)
T ss_pred cccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhh
Confidence 7888888875 4677888777766555 33 468999999999999999998742 11211
Q ss_pred ----CC--CCC-----------CccEEEeccccccccCCCceeeEEEeechhH
Q 024619 185 ----RP--LEL-----------GADIVMHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 185 ----~~--~~~-----------~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
.+ .++ -.|-++.|.-|--..+ ++|++..+++..
T Consensus 236 Ik~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~ 285 (471)
T COG3033 236 IKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSF 285 (471)
T ss_pred hhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccH
Confidence 00 011 2578888999954444 379999999853
No 389
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=97.95 E-value=3.1e-05 Score=59.12 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=46.4
Q ss_pred ccCCC-CCh-hHHHHHHHHHhHhC--C--C-ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCC
Q 024619 48 DYTRS-GNP-TRDALESLLAKLDK--A--D-RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGG 105 (265)
Q Consensus 48 ~y~~~-g~~-~~~~l~~~l~~~~g--~--~-~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~ 105 (265)
.|++. |.+ +++++++++.+.+| . + +.|++++|+ +++. ++..++++||.|++++|.|+.
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 37776 786 59999999999877 2 2 466666665 8886 778889999999999999973
No 390
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00045 Score=58.41 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=87.6
Q ss_pred chHHHHH---HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC-------CCHHHHHhhcCC---CceEEE
Q 024619 78 SGMAALA---AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT-------CDLDEVASAIGP---WTKLVW 144 (265)
Q Consensus 78 ~g~~al~---~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~---~~~~i~ 144 (265)
||+.|+. .++..+-++..|.+++|+|.... ...+..|+.+..... .|.+.+.+.+.+ +..+++
T Consensus 128 SGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~----~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilL 203 (427)
T KOG1411|consen 128 SGTGALRVGAEFLARFYPSRDIYIPDPTWGNHK----NIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILL 203 (427)
T ss_pred cCcchhhHHHHHHHhhccccceeecCCcccccC----ccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEe
Confidence 5676663 34555566888999999999886 555778887765542 266666555542 222333
Q ss_pred EecCCCCccccc---cHHHHHHHHHHcCCEEEEeCCcCCCCCcCCC----------CCC-ccEEEeccccccccCCCcee
Q 024619 145 VESPTNPRQQIC---DIRKIAEMAHAHGALLLVDNSIMSPVLSRPL----------ELG-ADIVMHSATKFIAGHSDVMA 210 (265)
Q Consensus 145 ~~~~~np~G~~~---~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~----------~~~-~di~~~s~sK~~~g~~g~~~ 210 (265)
-.-.|||||.-. .-++|.++.++.+.+-++|.+|-....++.. +.+ .-+++.|+.|.++ .=|=|+
T Consensus 204 haCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMG-LYgERv 282 (427)
T KOG1411|consen 204 HACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMG-LYGERV 282 (427)
T ss_pred ehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcc-hhhhcc
Confidence 344789999764 3577889999999999999998655444222 112 3478899999984 444456
Q ss_pred eEE
Q 024619 211 GVL 213 (265)
Q Consensus 211 G~v 213 (265)
|.+
T Consensus 283 Ga~ 285 (427)
T KOG1411|consen 283 GAL 285 (427)
T ss_pred cee
Confidence 643
No 391
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0012 Score=58.03 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=78.8
Q ss_pred EE-EcCCCCCChHHHHHhhcCCCCeEEEeecCC-----CHHHHHhhcCCC-----ceEEEEecCCCCcccc--ccHHHHH
Q 024619 96 IV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTC-----DLDEVASAIGPW-----TKLVWVESPTNPRQQI--CDIRKIA 162 (265)
Q Consensus 96 vi-v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~~~~~-----~~~i~~~~~~np~G~~--~~l~~i~ 162 (265)
|+ .++.+|.+. +..+...+++++.++.+ +.+.|++++.++ +..+++. ....||.+ .++.+|.
T Consensus 184 V~Y~SDqahssv----eka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~a-t~GTT~~ca~D~l~elg 258 (511)
T KOG0628|consen 184 VAYCSDQAHSSV----EKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCA-TLGTTSSCAFDELEELG 258 (511)
T ss_pred eEEecCcccchH----HHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEE-eecCccccccccHHHhc
Confidence 44 466666555 46778888898888865 678888887643 2233332 22335544 5799999
Q ss_pred HHHHHcCCEEEEeCCcCCCCCcCCC----CC---CccEEEeccccccccCCCceeeEEEeech
Q 024619 163 EMAHAHGALLLVDNSIMSPVLSRPL----EL---GADIVMHSATKFIAGHSDVMAGVLAVKGE 218 (265)
Q Consensus 163 ~~a~~~~~~li~D~~~~~~~~~~~~----~~---~~di~~~s~sK~~~g~~g~~~G~v~~~~~ 218 (265)
.+|+++|+++++|.+|+..+...+. -. .+|=+.+..|||+...-. +..++.++.
T Consensus 259 ~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfD--Cs~lWvkd~ 319 (511)
T KOG0628|consen 259 PVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFD--CSPLWVKDG 319 (511)
T ss_pred chhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeee--eecceeecC
Confidence 9999999999999999966654221 11 257777889998865533 566666664
No 392
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=96.97 E-value=0.0011 Score=56.69 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec----
Q 024619 55 PTRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN---- 125 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~---- 125 (265)
...++.++.++++++.+ .++++.+|. .... +.+.++.++..-.+....|..... ..++..+.++...+
T Consensus 50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~---~eA~~~~~~~~~~~~~~~ 126 (365)
T COG1932 50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAI---KEAKKVGKQPKLIDARIE 126 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhHH---HHHHHhccccccccccee
Confidence 35888999999999876 367777776 4454 667787665421333345544432 33343332211111
Q ss_pred ------CCCHHHHHhhcCCCceEEEEecCCCCcccccc-HHHHHHHHHHcCCEEEEeCCcCCCCCcCCCCCCccEEEecc
Q 024619 126 ------TCDLDEVASAIGPWTKLVWVESPTNPRQQICD-IRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSA 198 (265)
Q Consensus 126 ------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~-l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~~~~di~~~s~ 198 (265)
+++++... +.++...|.+++-..-+|.-.+ ...+. . +.+++.|.+......... -.+.|++.+|.
T Consensus 127 ~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr~iD-vsk~dviyaga 198 (365)
T COG1932 127 EAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVEVPELPDIG---S--DGLLVADASSAILSRPID-VSKYDVIYAGA 198 (365)
T ss_pred ccCccCCCChhhcc--cCCCccEEEEecCCcccceEccCCCCCC---C--CceEEEecccHHhcCCCC-hhHcceEEEeh
Confidence 22333322 2334445777766666676643 12111 1 278999988665554422 23579999999
Q ss_pred ccccccCCCceeeEEEeechhHHH
Q 024619 199 TKFIAGHSDVMAGVLAVKGERLAK 222 (265)
Q Consensus 199 sK~~~g~~g~~~G~v~~~~~~~~~ 222 (265)
.|.+ ||.| .++++.+++.+.+
T Consensus 199 QKnl-GpaG--ltvvIvr~~~l~r 219 (365)
T COG1932 199 QKNL-GPAG--LTVVIVRPDLLER 219 (365)
T ss_pred hhcc-Cccc--eEEEEEcHHHHhc
Confidence 9999 7888 4888888866543
No 393
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0093 Score=50.92 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=46.9
Q ss_pred CceEEEEecCCCCccccc----cHHHHHHHHHHcCCEEEEeCCcC-CCCCcC-------CCCCCccEEEeccccccc
Q 024619 139 WTKLVWVESPTNPRQQIC----DIRKIAEMAHAHGALLLVDNSIM-SPVLSR-------PLELGADIVMHSATKFIA 203 (265)
Q Consensus 139 ~~~~i~~~~~~np~G~~~----~l~~i~~~a~~~~~~li~D~~~~-~~~~~~-------~~~~~~di~~~s~sK~~~ 203 (265)
.+.+|+++..++..|.-. -++.+.+++++||+.+|+||++- .|..+. .+....|++ +|||=|.
T Consensus 271 pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~v--TFSKK~q 345 (484)
T KOG1405|consen 271 PVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVV--TFSKKFQ 345 (484)
T ss_pred CeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccce--ehhhhhh
Confidence 467899999999888763 27999999999999999999984 333331 223346777 5688664
No 394
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=92.48 E-value=0.29 Score=40.46 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=79.8
Q ss_pred HHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHh--cCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC---
Q 024619 58 DALESLLAKLDKAD---RALCFTSGM-AALA-AVTHL--LGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--- 126 (265)
Q Consensus 58 ~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~--~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 126 (265)
.++....-.+.|.. ++++++-.+ ..+. ++.++ -+|. +.|+-..-.--+.. ...-..|.+++.+..
T Consensus 60 ne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~----ksi~~agfepiiie~i~d 135 (432)
T KOG3843|consen 60 NEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCF----KSIIHAGFEPIIIENILD 135 (432)
T ss_pred HHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHH----HHHHhcCCCceeeecccc
Confidence 34444444455543 566666554 4453 55554 3444 33443333222222 222345777666541
Q ss_pred -----CCHHHHHhhcCC-Cce-EEEEecCCC-Ccccc-ccHHHHHHHHHHcCCEEEEeCCcCCCCCc------CCCCC-C
Q 024619 127 -----CDLDEVASAIGP-WTK-LVWVESPTN-PRQQI-CDIRKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-G 190 (265)
Q Consensus 127 -----~d~~~l~~~~~~-~~~-~i~~~~~~n-p~G~~-~~l~~i~~~a~~~~~~li~D~~~~~~~~~------~~~~~-~ 190 (265)
.|++.+++.+.+ ... .+++-+..+ ..-.. ..+++|..+|..|+++-++..+|+.-.-. ..... .
T Consensus 136 ~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~gr 215 (432)
T KOG3843|consen 136 GDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGR 215 (432)
T ss_pred chHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhcc
Confidence 267777666642 222 333322211 11112 34899999999999999999999754321 11222 2
Q ss_pred ccEEEeccccccccCCC
Q 024619 191 ADIVMHSATKFIAGHSD 207 (265)
Q Consensus 191 ~di~~~s~sK~~~g~~g 207 (265)
.|.++.|+.|.|.-|-|
T Consensus 216 ida~vqsldknf~vpvg 232 (432)
T KOG3843|consen 216 IDAFVQSLDKNFMVPVG 232 (432)
T ss_pred HHHHHHHhhhcceeecc
Confidence 68899999999988754
No 395
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.95 E-value=1.2 Score=36.23 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhcCCCCEEE-EcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 78 SGMAALAAVTHLLGTGEEIV-AGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 78 ~g~~al~~~~~~~~~g~~vi-v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
+|..+-.++..+++++..|. +.++.-.... ..++..|++++..+.+|.+.|.++++. ...|++..+........
T Consensus 7 tG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~----~~l~~~g~~vv~~d~~~~~~l~~al~g-~d~v~~~~~~~~~~~~~ 81 (233)
T PF05368_consen 7 TGNQGRSVVRALLSAGFSVRALVRDPSSDRA----QQLQALGAEVVEADYDDPESLVAALKG-VDAVFSVTPPSHPSELE 81 (233)
T ss_dssp TSHHHHHHHHHHHHTTGCEEEEESSSHHHHH----HHHHHTTTEEEES-TT-HHHHHHHHTT-CSEEEEESSCSCCCHHH
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEeccchhhh----hhhhcccceEeecccCCHHHHHHHHcC-CceEEeecCcchhhhhh
Confidence 35555556666665665544 4444411111 333457899999999999999999974 44444444433233444
Q ss_pred cHHHHHHHHHHcCCEEEE
Q 024619 157 DIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~ 174 (265)
-...+++.|++.|+-.++
T Consensus 82 ~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 82 QQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHHHHHHHHHT-SEEE
T ss_pred hhhhHHHhhhccccceEE
Confidence 467899999999976554
No 396
>PLN00191 enolase
Probab=86.21 E-value=6.1 Score=35.87 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=69.4
Q ss_pred chHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619 78 SGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 78 ~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~ 155 (265)
+..+++..+..++++-+.+.+++|........|..+.+...+.+..=+. .+++.+++.+..+..=++..-+ |..|.+
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl-~qiGGI 374 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKV-NQIGTV 374 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecc-cccCCH
Confidence 3346667777777766777899998877777776766665554443332 4689999888765443333334 557999
Q ss_pred ccHHHHHHHHHHcCCEEEEe
Q 024619 156 CDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 156 ~~l~~i~~~a~~~~~~li~D 175 (265)
.+..+++++|+++|..+++-
T Consensus 375 Tea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 375 TESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred HHHHHHHHHHHHCCCEEEeC
Confidence 99999999999999998764
No 397
>PLN02672 methionine S-methyltransferase
Probab=85.18 E-value=31 Score=35.00 Aligned_cols=180 Identities=16% Similarity=0.107 Sum_probs=100.6
Q ss_pred CCCCCccCCC-CCh-hHHHHHHHHHhHhCC----CceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC
Q 024619 43 ENGPYDYTRS-GNP-TRDALESLLAKLDKA----DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK 116 (265)
Q Consensus 43 ~~~~~~y~~~-g~~-~~~~l~~~l~~~~g~----~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~ 116 (265)
++..+.|.+. |.. .|..+...+..+++. ++++++.+-..|+.-++.++.|.-.+ ++..---.....|...+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 494 (1082)
T PLN02672 416 GLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAI-VDEHLTRWLPKKWLTSLAI 494 (1082)
T ss_pred cCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHh-hhhhhhccCCHHHHhHhhh
Confidence 4456667777 775 588888899888864 46778888888886555554442111 1110000001111111111
Q ss_pred ----------CCeEEEeecCCCHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCC-----
Q 024619 117 ----------TGVVVKRVNTCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMS----- 180 (265)
Q Consensus 117 ----------~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~----- 180 (265)
..+++++.|..+. .+.+.++ =|+++|+..-.....-.-.-++.|.+.+++.|+.++.|..-..
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1082)
T PLN02672 495 ENATSDSKSDDVITVIEAPRQSD-LVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSL 573 (1082)
T ss_pred hcccccCccCCeEEEEeCCCcch-HHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccC
Confidence 3456666665542 4444443 2577777554433222223578999999999999999976321
Q ss_pred ----CCC----cCCCCCCccEEEeccccccccCCCceeeEEEeechhHHHHHHH
Q 024619 181 ----PVL----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 226 (265)
Q Consensus 181 ----~~~----~~~~~~~~di~~~s~sK~~~g~~g~~~G~v~~~~~~~~~~~~~ 226 (265)
|.+ ..+... ...++.++-|.- -.+.+-.++++.-++.+.+.+..
T Consensus 574 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 625 (1082)
T PLN02672 574 PGSNGVLKYLAGHPLPS-HAAIICGLVKNQ-VYSDLEVAFVISENEAVLKALSK 625 (1082)
T ss_pred CCcccHHHHhcCCCCCc-chhHhhhhhhcc-ccccceEEEEecCcHHHHHHHHH
Confidence 111 012222 223444677754 45667788888777666664443
No 398
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.49 E-value=16 Score=28.04 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 79 GMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 79 g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
|.-+-.++..+++.|-+|....-.-.... . ..+++++..+..|.+.+.+++.. ...|+.+.+..+. .....
T Consensus 8 G~vG~~l~~~L~~~~~~V~~~~R~~~~~~----~---~~~~~~~~~d~~d~~~~~~al~~-~d~vi~~~~~~~~-~~~~~ 78 (183)
T PF13460_consen 8 GFVGRALAKQLLRRGHEVTALVRSPSKAE----D---SPGVEIIQGDLFDPDSVKAALKG-ADAVIHAAGPPPK-DVDAA 78 (183)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSGGGHH----H---CTTEEEEESCTTCHHHHHHHHTT-SSEEEECCHSTTT-HHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEecCchhcc----c---ccccccceeeehhhhhhhhhhhh-cchhhhhhhhhcc-ccccc
Confidence 44556677888888876654332222221 2 67899999999999999999984 4555444332222 34457
Q ss_pred HHHHHHHHHcCCE
Q 024619 159 RKIAEMAHAHGAL 171 (265)
Q Consensus 159 ~~i~~~a~~~~~~ 171 (265)
+.+++.|++.++.
T Consensus 79 ~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 79 KNIIEAAKKAGVK 91 (183)
T ss_dssp HHHHHHHHHTTSS
T ss_pred ccccccccccccc
Confidence 8899999998873
No 399
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=80.71 E-value=15 Score=30.98 Aligned_cols=151 Identities=22% Similarity=0.269 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHhHhCCC---ceEEecchH-HHHH-HHHHhc--CCC---CEEEEcCCCCCChHHHHHhhcCCCCeE-EEe
Q 024619 55 PTRDALESLLAKLDKAD---RALCFTSGM-AALA-AVTHLL--GTG---EEIVAGDDLYGGTDRLLSRVTPKTGVV-VKR 123 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~---~~i~~~~g~-~al~-~~~~~~--~~g---~~viv~~~~~~~~~~~~~~~~~~~g~~-~~~ 123 (265)
...++.+..+.++++.. .+++..+|. ...+ +.+.++ +.| |-|+. .+|..- .+ .-+++.|.. .+.
T Consensus 52 kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVT--GsWS~K--A~-~EAkk~~~~~~V~ 126 (370)
T KOG2790|consen 52 KIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVT--GSWSAK--AA-EEAKKYGTPNIVI 126 (370)
T ss_pred HHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccCCccceEEe--ccccHH--HH-HHHHhhCCceEEe
Confidence 35788888999999876 366666654 4343 344454 445 33443 334221 22 223444433 333
Q ss_pred ec--------CCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCCCC-CCccEE
Q 024619 124 VN--------TCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRPLE-LGADIV 194 (265)
Q Consensus 124 ~~--------~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~~~-~~~di~ 194 (265)
.+ ++|.+..+ .+++.+.++.|.-....|.-.+--- .-.-+|.+++.|-..-+ +..+.+ ...+++
T Consensus 127 ~~~k~y~ygkvPd~~~w~--~~~da~yvyyCaNETVHGVEf~~~P---~~~~~~~vlVaDmSSnf--lSrpvDvsk~gvi 199 (370)
T KOG2790|consen 127 PKLKSYTYGKVPDPSTWE--LNPDASYVYYCANETVHGVEFDFIP---VNDPKGAVLVADMSSNF--LSRPVDVSKFGVI 199 (370)
T ss_pred ccccccccCcCCChhhcc--cCCCccEEEEecCceeeceecCCCC---CCCCCCceEEEecccch--hcCCccchhcceE
Confidence 33 34555443 2456667777776666676542111 22345888899976432 222332 246789
Q ss_pred EeccccccccCCCceeeEEEeechhH
Q 024619 195 MHSATKFIAGHSDVMAGVLAVKGERL 220 (265)
Q Consensus 195 ~~s~sK~~~g~~g~~~G~v~~~~~~~ 220 (265)
+.+..|.+ ||.|+ -+++.+++.+
T Consensus 200 ~aGAQKN~-G~aG~--Tvvivr~dll 222 (370)
T KOG2790|consen 200 FAGAQKNV-GPAGV--TVVIVRKDLL 222 (370)
T ss_pred Eecccccc-Ccccc--EEEEEehhhh
Confidence 99999999 78886 4455566554
No 400
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=80.21 E-value=23 Score=28.57 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=58.5
Q ss_pred ceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCC
Q 024619 72 RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP 151 (265)
Q Consensus 72 ~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np 151 (265)
.++++++|..|..=+..+++.|..|.+-.|...+-. ..+.+..+++++. ...+.+.+. +..+|++. .+++
T Consensus 14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el---~~~~~~~~i~~~~-~~~~~~~~~-----~~~lviaA-t~d~ 83 (210)
T COG1648 14 KVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPEL---KALIEEGKIKWIE-REFDAEDLD-----DAFLVIAA-TDDE 83 (210)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHH---HHHHHhcCcchhh-cccChhhhc-----CceEEEEe-CCCH
Confidence 588999999999888889999999998888873333 3444555544433 222333333 23344433 3332
Q ss_pred ccccccHHHHHHHHHHcCCEE-EEeCC
Q 024619 152 RQQICDIRKIAEMAHAHGALL-LVDNS 177 (265)
Q Consensus 152 ~G~~~~l~~i~~~a~~~~~~l-i~D~~ 177 (265)
. -=++|.+.|+++++++ ++|+.
T Consensus 84 ~----ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 84 E----LNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred H----HHHHHHHHHHHhCCceeccCCc
Confidence 1 2278999999999875 55554
No 401
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=80.12 E-value=9.7 Score=31.83 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=53.1
Q ss_pred EEecchH--HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-----CC-ceEEEE
Q 024619 74 LCFTSGM--AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PW-TKLVWV 145 (265)
Q Consensus 74 i~~~~g~--~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-----~~-~~~i~~ 145 (265)
+++++++ .+-.++..+.+.|..|.+..-.-.. ....+++++..+..|.+.+.++++ .. ...+++
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~--------~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSS--------SAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcc--------ccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 3455544 3445667777778766543211100 122466677778889999988873 23 566666
Q ss_pred ecCCCCccccccHHHHHHHHHHcCC
Q 024619 146 ESPTNPRQQICDIRKIAEMAHAHGA 170 (265)
Q Consensus 146 ~~~~np~G~~~~l~~i~~~a~~~~~ 170 (265)
..+..+ ........+++.|++.|+
T Consensus 74 ~~~~~~-~~~~~~~~~i~aa~~~gv 97 (285)
T TIGR03649 74 VAPPIP-DLAPPMIKFIDFARSKGV 97 (285)
T ss_pred eCCCCC-ChhHHHHHHHHHHHHcCC
Confidence 655332 233456788999999886
No 402
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=80.07 E-value=11 Score=33.88 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC--CeEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~--g~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
+++..+..++++-+.+.+++|....-...|..+.+.. .+.+..=+. .+++.+++.+..+..=++..-+ |..|.+.
T Consensus 266 eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~-~~iGGIt 344 (425)
T TIGR01060 266 EMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKP-NQIGTLT 344 (425)
T ss_pred HHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecc-cccCCHH
Confidence 4555555566655667899998877667776666665 344433332 2588888888755433333334 5589999
Q ss_pred cHHHHHHHHHHcCCEEE
Q 024619 157 DIRKIAEMAHAHGALLL 173 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li 173 (265)
+..+++++|+++|+.++
T Consensus 345 ea~~ia~lA~~~Gi~~v 361 (425)
T TIGR01060 345 ETLDAVELAKKAGYTAV 361 (425)
T ss_pred HHHHHHHHHHHcCCcEE
Confidence 99999999999999755
No 403
>PTZ00081 enolase; Provisional
Probab=79.23 E-value=12 Score=33.77 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC--eEEEeec--CCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVN--TCDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g--~~~~~~~--~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
+.+.....++++-+.+.+++|....-...|..+.+..| +.+..=+ ..+++.+++.+..+..=++..-+ |..|.+.
T Consensus 285 eli~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKv-nqiGGIT 363 (439)
T PTZ00081 285 ELVELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKV-NQIGTVT 363 (439)
T ss_pred HHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEecc-ccccCHH
Confidence 33445556677666778999998877777777766663 3333323 24689999888765443444434 5579999
Q ss_pred cHHHHHHHHHHcCCEEEEe
Q 024619 157 DIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li~D 175 (265)
+..+++++|+++|..+++=
T Consensus 364 e~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 364 EAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred HHHHHHHHHHHcCCcEEEe
Confidence 9999999999999887763
No 404
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=78.49 E-value=12 Score=33.49 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCC--CeEEEeec--CCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKT--GVVVKRVN--TCDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~--g~~~~~~~--~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
+++..+..++++-+.+.+++|........|..+.+.. .+.+..=+ ..+++.+++.+..+..=++..-+ |..|.+.
T Consensus 265 eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~-~~iGGit 343 (408)
T cd03313 265 ELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKV-NQIGTLT 343 (408)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcc-cccCCHH
Confidence 5555666777666677899998877777776766665 33333223 23688999888755443343434 4578899
Q ss_pred cHHHHHHHHHHcCCEEE
Q 024619 157 DIRKIAEMAHAHGALLL 173 (265)
Q Consensus 157 ~l~~i~~~a~~~~~~li 173 (265)
+..+++++|+++|+.++
T Consensus 344 e~~~ia~lA~~~G~~~~ 360 (408)
T cd03313 344 ETIEAIKLAKKNGYGVV 360 (408)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 99999999999999886
No 405
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.11 E-value=12 Score=33.17 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=59.9
Q ss_pred HHHHHHHhHhCCCceEEecchH-HH-HHHHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC------CCH
Q 024619 59 ALESLLAKLDKADRALCFTSGM-AA-LAAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT------CDL 129 (265)
Q Consensus 59 ~l~~~l~~~~g~~~~i~~~~g~-~a-l~~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~ 129 (265)
.+...++.+ |+...++--.|. ++ -.+...+-..+ +.=++..+..+... +...-..+-++..+|. .+.
T Consensus 55 NVa~NiasL-Ga~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~---K~Rv~s~nQQllRvD~Ee~~~~~~~ 130 (467)
T COG2870 55 NVAKNIASL-GANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIV---KLRVLSRNQQLLRLDFEEKFPIEDE 130 (467)
T ss_pred HHHHHHHHc-CCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCcee---eeeeecccceEEEecccccCcchhH
Confidence 444555544 566555555554 33 22222221111 22234444444432 1111222334555542 244
Q ss_pred HHHHhhcC---CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 130 DEVASAIG---PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 130 ~~l~~~~~---~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
+.+.+.+. ++.++++++.- + -|.+.+.+.++++||++|+++++|
T Consensus 131 ~~ll~~~~~~l~~~~~vVLSDY-~-KG~L~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 131 NKLLEKIKNALKSFDALVLSDY-A-KGVLTNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred HHHHHHHHHHhhcCCEEEEecc-c-cccchhHHHHHHHHHHcCCcEEEC
Confidence 55555544 45677776643 3 588888999999999999999999
No 406
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.00 E-value=32 Score=27.51 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=57.3
Q ss_pred ceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCC
Q 024619 72 RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNP 151 (265)
Q Consensus 72 ~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np 151 (265)
.++++.+|..|..-+..+++.|-.|.+-+|...... ..+.+..+++++.=+. +.+.+ .+..+|+ ..+.++
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l---~~l~~~~~i~~~~~~~-~~~dl-----~~~~lVi-~at~d~ 80 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESEL---TLLAEQGGITWLARCF-DADIL-----EGAFLVI-AATDDE 80 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHH---HHHHHcCCEEEEeCCC-CHHHh-----CCcEEEE-ECCCCH
Confidence 588999999998888888888888887777665333 2333433444433222 22333 2344444 334332
Q ss_pred ccccccHHHHHHHHHHcCCEE-EEeCCc
Q 024619 152 RQQICDIRKIAEMAHAHGALL-LVDNSI 178 (265)
Q Consensus 152 ~G~~~~l~~i~~~a~~~~~~l-i~D~~~ 178 (265)
..-+.+.+.|++.++++ +.|+..
T Consensus 81 ----~ln~~i~~~a~~~~ilvn~~d~~e 104 (205)
T TIGR01470 81 ----ELNRRVAHAARARGVPVNVVDDPE 104 (205)
T ss_pred ----HHHHHHHHHHHHcCCEEEECCCcc
Confidence 22368999999999887 456553
No 407
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.43 E-value=4.4 Score=29.04 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=57.5
Q ss_pred HHHHHhhcCCCCeEEEeecCC-CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCC
Q 024619 107 DRLLSRVTPKTGVVVKRVNTC-DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPV 182 (265)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~ 182 (265)
...+...++..|.++..++.. +.+++.+.+. .++.+|.++... +.......++++..|+. ++.+++=+.+....
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence 333456677789999988765 4577766654 578888886543 33456678888888887 78898888765433
Q ss_pred CcCCCC--CCccEEEe
Q 024619 183 LSRPLE--LGADIVMH 196 (265)
Q Consensus 183 ~~~~~~--~~~di~~~ 196 (265)
....+. .+.|+++.
T Consensus 95 ~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 95 PEEILREYPGIDYVVR 110 (121)
T ss_dssp HHHHHHHHHTSEEEEE
T ss_pred hHHHhccCcCcceecC
Confidence 332222 45666554
No 408
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=76.14 E-value=20 Score=30.44 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE--eecCCCHHHHHhhcCCCceEEEEecCCCCcccc--c
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK--RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI--C 156 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~--~ 156 (265)
-+...+..+.+.|.-||++=-+-......+ ...-..| ++. .++..|.+.++++.....-+|-+-.-..+|+.. .
T Consensus 73 lGryvvnklak~GSQviiPyR~d~~~~r~l-kvmGdLG-Qvl~~~fd~~DedSIr~vvk~sNVVINLIGrd~eTknf~f~ 150 (391)
T KOG2865|consen 73 LGRYVVNKLAKMGSQVIIPYRGDEYDPRHL-KVMGDLG-QVLFMKFDLRDEDSIRAVVKHSNVVINLIGRDYETKNFSFE 150 (391)
T ss_pred ccHHHHHHHhhcCCeEEEeccCCccchhhe-eeccccc-ceeeeccCCCCHHHHHHHHHhCcEEEEeeccccccCCcccc
Confidence 334577788888999998644444444332 2223333 344 445669999999998666667666677778766 3
Q ss_pred c-----HHHHHHHHHHcCCE
Q 024619 157 D-----IRKIAEMAHAHGAL 171 (265)
Q Consensus 157 ~-----l~~i~~~a~~~~~~ 171 (265)
| -+.|+.+|++.|+-
T Consensus 151 Dvn~~~aerlAricke~GVe 170 (391)
T KOG2865|consen 151 DVNVHIAERLARICKEAGVE 170 (391)
T ss_pred cccchHHHHHHHHHHhhChh
Confidence 3 38999999999874
No 409
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=75.32 E-value=45 Score=28.45 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=57.4
Q ss_pred ceEEecchHHHHH-HHHHhcCCC--CEEEEcC--CCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619 72 RALCFTSGMAALA-AVTHLLGTG--EEIVAGD--DLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE 146 (265)
Q Consensus 72 ~~i~~~~g~~al~-~~~~~~~~g--~~viv~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 146 (265)
+++++.+.+..+. .+....++| -.|+|.+ |.+.+ +......+ ..|++...++ |. ++-+.+.+-.++|+-.
T Consensus 164 EviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qg-H~~Ak~la-~~giettVI~--da-aVfA~MsrVnKVIigt 238 (353)
T KOG1465|consen 164 EVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQG-HELAKPLA-QAGIETTVIP--DA-AVFAMMSRVNKVIIGT 238 (353)
T ss_pred ceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccc-hHhhHHHH-HcCCeeEEec--cH-HHHHHhhhcceEEEEe
Confidence 4555555455554 444445553 3466644 33333 22222333 5678876665 43 3444555556666666
Q ss_pred cCCCCcccc---ccHHHHHHHHHHcCCEEEEeC
Q 024619 147 SPTNPRQQI---CDIRKIAEMAHAHGALLLVDN 176 (265)
Q Consensus 147 ~~~np~G~~---~~l~~i~~~a~~~~~~li~D~ 176 (265)
+..-+.|.+ .-...++..||+|-+++++=.
T Consensus 239 ~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlA 271 (353)
T KOG1465|consen 239 HAVLANGGLRAPSGVHTVALAAKHHSVPVIVLA 271 (353)
T ss_pred eeEecCCCeeccchHHHHHHHHHhcCCcEEEec
Confidence 666566655 236888999999999887764
No 410
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=73.88 E-value=7.4 Score=33.44 Aligned_cols=103 Identities=23% Similarity=0.198 Sum_probs=60.7
Q ss_pred eEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhc----CCCCeEEEeecCCCHHHHHhhcCC-CceEEE-
Q 024619 73 ALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVT----PKTGVVVKRVNTCDLDEVASAIGP-WTKLVW- 144 (265)
Q Consensus 73 ~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~- 144 (265)
.+++++|+.=+ ++.+.+++.|+.|++.+....++...+.... +..++.+...|+.|.+.|++.++. +...|+
T Consensus 4 ~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V~H 83 (343)
T KOG1371|consen 4 HVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAVMH 83 (343)
T ss_pred EEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceEEe
Confidence 45666665333 6888899999988877765555544332222 235578888889999999988763 222222
Q ss_pred E-------ecCCCCccccc----cHHHHHHHHHHcCCEEEEe
Q 024619 145 V-------ESPTNPRQQIC----DIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 145 ~-------~~~~np~G~~~----~l~~i~~~a~~~~~~li~D 175 (265)
+ ++..+|.-... ---.+.+.++++|..-++=
T Consensus 84 fa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~ 125 (343)
T KOG1371|consen 84 FAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVF 125 (343)
T ss_pred ehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEE
Confidence 1 12223321111 1235778888888654443
No 411
>PRK00077 eno enolase; Provisional
Probab=73.65 E-value=22 Score=32.03 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC--eEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
...+..++++-+.+.+++|..+.-...|..+.+..| +.+..=+. .+++.+++.+..+..=++..-+ |..|.+.+.
T Consensus 267 ~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~-~~~GGitea 345 (425)
T PRK00077 267 IDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKV-NQIGTLTET 345 (425)
T ss_pred HHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCc-cccCCHHHH
Confidence 345566677667788999998776666766666653 44433332 3688999888755443333334 457899999
Q ss_pred HHHHHHHHHcCCEEE
Q 024619 159 RKIAEMAHAHGALLL 173 (265)
Q Consensus 159 ~~i~~~a~~~~~~li 173 (265)
.+++++|+++|+.++
T Consensus 346 ~~ia~lA~~~gi~~~ 360 (425)
T PRK00077 346 LDAIELAKRAGYTAV 360 (425)
T ss_pred HHHHHHHHHcCCeEE
Confidence 999999999999665
No 412
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.09 E-value=35 Score=30.33 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=68.0
Q ss_pred ceEEecchHHHHHHHHHhcCCC-CEEEEcCCCCCChHHHHHhhcCC--CCeEEEeecCCCHHHHHhhcCCCceEEEEecC
Q 024619 72 RALCFTSGMAALAAVTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPK--TGVVVKRVNTCDLDEVASAIGPWTKLVWVESP 148 (265)
Q Consensus 72 ~~i~~~~g~~al~~~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~ 148 (265)
+++++.+|.-+..++..+.+.| ..|.+.+-+-..-. ++... .+++...+|..|.+++.+++++. .+|+-+.|
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~----~i~~~~~~~v~~~~vD~~d~~al~~li~~~-d~VIn~~p 77 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCA----RIAELIGGKVEALQVDAADVDALVALIKDF-DLVINAAP 77 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHH----HHHhhccccceeEEecccChHHHHHHHhcC-CEEEEeCC
Confidence 5788888887776666666666 46666555433332 22222 25778888889999999998765 55554444
Q ss_pred CCCcccc------------------ccHHHHHHHHHHcCCEEEEeCCcCCCC
Q 024619 149 TNPRQQI------------------CDIRKIAEMAHAHGALLLVDNSIMSPV 182 (265)
Q Consensus 149 ~np~G~~------------------~~l~~i~~~a~~~~~~li~D~~~~~~~ 182 (265)
.+.+=.+ .+..++-+.|++.|+..+.+.-.+.|.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi 129 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGI 129 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcch
Confidence 4322122 123567888888888888887666554
No 413
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.08 E-value=20 Score=31.05 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=72.3
Q ss_pred HHHHH-HHHHhcCCCCEEEEcCC-CC-CChHHHHHhhcCCCCeEEEeec-CCC-----HHHHHhhcCCCceEEEEecC--
Q 024619 80 MAALA-AVTHLLGTGEEIVAGDD-LY-GGTDRLLSRVTPKTGVVVKRVN-TCD-----LDEVASAIGPWTKLVWVESP-- 148 (265)
Q Consensus 80 ~~al~-~~~~~~~~g~~viv~~~-~~-~~~~~~~~~~~~~~g~~~~~~~-~~d-----~~~l~~~~~~~~~~i~~~~~-- 148 (265)
+..+. +..-+.+.|..|++... +| ....+.+..|.++.|++++.-+ -.| .++++.+..++..+|++...
T Consensus 153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGR 232 (340)
T COG0552 153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGR 232 (340)
T ss_pred HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCccc
Confidence 35566 66667788988876443 33 2234456788889999998854 224 46777777788888888653
Q ss_pred -CCCccccccHHHHHHHHHHcC------CEEEEeCCcCCCCC
Q 024619 149 -TNPRQQICDIRKIAEMAHAHG------ALLLVDNSIMSPVL 183 (265)
Q Consensus 149 -~np~G~~~~l~~i~~~a~~~~------~~li~D~~~~~~~~ 183 (265)
||-......|+.|..++++.. ++++.|...+.-.+
T Consensus 233 Lhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 233 LHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred ccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 455555567899999999875 67777998664433
No 414
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=72.01 E-value=19 Score=25.18 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=32.7
Q ss_pred EEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 120 VVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 120 ~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
.++-++.+..+.+..++....++++++.- ..+-+++.++|++.++.++.
T Consensus 42 ~lvIt~gdR~di~~~a~~~~i~~iIltg~------~~~~~~v~~la~~~~i~vi~ 90 (105)
T PF07085_consen 42 DLVITPGDREDIQLAAIEAGIACIILTGG------LEPSEEVLELAKELGIPVIS 90 (105)
T ss_dssp EEEEEETT-HHHHHHHCCTTECEEEEETT----------HHHHHHHHHHT-EEEE
T ss_pred eEEEEeCCcHHHHHHHHHhCCCEEEEeCC------CCCCHHHHHHHHHCCCEEEE
Confidence 44444455677788888878888888753 34558999999999988875
No 415
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=71.31 E-value=47 Score=27.59 Aligned_cols=101 Identities=21% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCceEEecchH--HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--CCHHHHHhhcCCCceEEEE
Q 024619 70 ADRALCFTSGM--AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--CDLDEVASAIGPWTKLVWV 145 (265)
Q Consensus 70 ~~~~i~~~~g~--~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~~~~~~~~i~~ 145 (265)
+..++..+||- +|+.....++.--..|+++..+=..- ....+.+|.++++++. .|-|.+.+.+.+++..+++
T Consensus 73 ~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~K----v~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i 148 (323)
T KOG1251|consen 73 AKGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICK----VAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLI 148 (323)
T ss_pred cCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHH----HHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEe
Confidence 34688888885 55655555555456677765442222 2556788999999984 4889999988888888777
Q ss_pred ecCCCCc---cccccHHHHHHHHHHcCCEEEE
Q 024619 146 ESPTNPR---QQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 146 ~~~~np~---G~~~~l~~i~~~a~~~~~~li~ 174 (265)
..-+.|. |+-.--.++.+..-+.+.+++-
T Consensus 149 ~Py~~p~vIaGqgTiA~ElleqVg~iDalfvp 180 (323)
T KOG1251|consen 149 HPYNHPSVIAGQGTIALELLEQVGEIDALFVP 180 (323)
T ss_pred CCCCCcceeeccchHHHHHHHhhCccceEEEe
Confidence 6444343 2112224444444455655554
No 416
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=70.95 E-value=61 Score=28.21 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=67.6
Q ss_pred eEEecchH--HHHHHHHHhcCC--CCEEEEcCCCCCChHHHHH--hhcCC-C-CeEEEeecCCCHHHHHhhcCCCceEEE
Q 024619 73 ALCFTSGM--AALAAVTHLLGT--GEEIVAGDDLYGGTDRLLS--RVTPK-T-GVVVKRVNTCDLDEVASAIGPWTKLVW 144 (265)
Q Consensus 73 ~i~~~~g~--~al~~~~~~~~~--g~~viv~~~~~~~~~~~~~--~~~~~-~-g~~~~~~~~~d~~~l~~~~~~~~~~i~ 144 (265)
.+.++.|+ +-..-+..+++. +-.+++-+.+|........ .+.+. . +..++-=++.++|..++++.....+|.
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ik 176 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVK 176 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEE
Confidence 45556665 335566666654 3334444455544433321 22222 2 344555557789999988887777776
Q ss_pred Ee--cCCCCcccc-----cc----HHHHHHHHHHcCCEEEEeCCcC-CCCCcCCCCCCccEEEe
Q 024619 145 VE--SPTNPRQQI-----CD----IRKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMH 196 (265)
Q Consensus 145 ~~--~~~np~G~~-----~~----l~~i~~~a~~~~~~li~D~~~~-~~~~~~~~~~~~di~~~ 196 (265)
+. +-++-++.. .| +.++++.++++++.+|.|+-.. .+-+...+..|.|.++.
T Consensus 177 VgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 177 VGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVML 240 (343)
T ss_pred EcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEE
Confidence 64 222333333 22 4566666777789999996543 33333344555554433
No 417
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=69.86 E-value=24 Score=29.22 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=60.5
Q ss_pred HHHHHHHHhHhCCCceEEecchH-HHHHHHHHhcCCCCEEE---EcCCCCCC-hHHHHHhhcCCCCeEEEeecCCCHHHH
Q 024619 58 DALESLLAKLDKADRALCFTSGM-AALAAVTHLLGTGEEIV---AGDDLYGG-TDRLLSRVTPKTGVVVKRVNTCDLDEV 132 (265)
Q Consensus 58 ~~l~~~l~~~~g~~~~i~~~~g~-~al~~~~~~~~~g~~vi---v~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~d~~~l 132 (265)
+.+...+.+.. .-.+.+++|. ..+.+.++.-.-|+.|+ +..|-.+. ........++..|++...++.+-.+ -
T Consensus 8 ~~l~~~ik~~~--kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~-~ 84 (269)
T COG1606 8 ERLKKAIKEKK--KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD-P 84 (269)
T ss_pred HHHHHHHhhcC--eEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc-h
Confidence 34444444443 3477788887 33333344333355543 34443333 2333445566778887777755333 1
Q ss_pred HhhcCCCceEEEEecCCCCccccc--cHHHHHHHHHHcCCEEEEeCCcC
Q 024619 133 ASAIGPWTKLVWVESPTNPRQQIC--DIRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 133 ~~~~~~~~~~i~~~~~~np~G~~~--~l~~i~~~a~~~~~~li~D~~~~ 179 (265)
. +..++.|++=.+. =...|.+.+++.|.-++.|++.+
T Consensus 85 ~----------~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 85 E----------FKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred h----------hccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 0 1123334443332 24789999999999999999864
No 418
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=68.34 E-value=72 Score=27.25 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=58.6
Q ss_pred ceEEecchH-HHHHHHHHhcCCCC--EEEE--cCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619 72 RALCFTSGM-AALAAVTHLLGTGE--EIVA--GDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE 146 (265)
Q Consensus 72 ~~i~~~~g~-~al~~~~~~~~~g~--~viv--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 146 (265)
+.|++.+-+ .++..+....+.|. +|++ +.|.+.+.. +...++..|+++..+.-.-.-.+. .++..|++-
T Consensus 121 ~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~--~ak~L~~~gI~~~~I~Dsa~~~~~----~~vd~VivG 194 (301)
T COG1184 121 DVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRI--MAKELRQSGIPVTVIVDSAVGAFM----SRVDKVLVG 194 (301)
T ss_pred CEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHH--HHHHHHHcCCceEEEechHHHHHH----HhCCEEEEC
Confidence 455555555 55567777777776 5665 556665432 346667788888776621122222 234444442
Q ss_pred c-CCCCcccccc---HHHHHHHHHHcCCEEEEe-CCcCCC
Q 024619 147 S-PTNPRQQICD---IRKIAEMAHAHGALLLVD-NSIMSP 181 (265)
Q Consensus 147 ~-~~np~G~~~~---l~~i~~~a~~~~~~li~D-~~~~~~ 181 (265)
. .---.|.+.. --.|+..||+++.++++= |+|-..
T Consensus 195 ad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~ 234 (301)
T COG1184 195 ADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFV 234 (301)
T ss_pred ccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeeccc
Confidence 1 1122344432 367888999999976554 666543
No 419
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.20 E-value=13 Score=32.12 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=49.2
Q ss_pred CCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619 101 DLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178 (265)
Q Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~ 178 (265)
-.|++|- .+++...++++++..+.+...+-... ++-|-|+++-|--. .+.+.++|.+.|+++| +.+.|+.+
T Consensus 59 k~y~syE----eLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~--n~~e~~~iveaA~~rg-v~~meg~~ 131 (351)
T KOG2741|consen 59 KAYGSYE----ELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAM--NVAEAEEIVEAAEARG-VFFMEGLW 131 (351)
T ss_pred ccccCHH----HHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccC--CHHHHHHHHHHHHHcC-cEEEeeee
Confidence 3677774 77788888889988776555443322 34445787776432 2567899999999998 66667665
Q ss_pred C
Q 024619 179 M 179 (265)
Q Consensus 179 ~ 179 (265)
.
T Consensus 132 ~ 132 (351)
T KOG2741|consen 132 W 132 (351)
T ss_pred e
Confidence 3
No 420
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=68.20 E-value=33 Score=27.06 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=60.2
Q ss_pred ccCCCCC--hhHHHHHHHHHhHhCCC--ceEEecchHHHHH-HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEE
Q 024619 48 DYTRSGN--PTRDALESLLAKLDKAD--RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVK 122 (265)
Q Consensus 48 ~y~~~g~--~~~~~l~~~l~~~~g~~--~~i~~~~g~~al~-~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~ 122 (265)
-|.|.-+ .+.+++++..+++-+.. -++=+.+|+..+. .+...+.++-..+..+ .-+...+.-...++.++.+..
T Consensus 18 VYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latD-iNp~A~~~Tl~TA~~n~~~~~ 96 (209)
T KOG3191|consen 18 VYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATD-INPEALEATLETARCNRVHID 96 (209)
T ss_pred ccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEec-CCHHHHHHHHHHHHhcCCccc
Confidence 5766633 45899999988887744 3555677776655 4444555554434333 233333333455566665544
Q ss_pred eecCCCHHHHHhhcCCCceEEEEecCCCCcccc
Q 024619 123 RVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI 155 (265)
Q Consensus 123 ~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~ 155 (265)
.+-.+=...++. +++.+++++.|+-||-..
T Consensus 97 ~V~tdl~~~l~~---~~VDvLvfNPPYVpt~~~ 126 (209)
T KOG3191|consen 97 VVRTDLLSGLRN---ESVDVLVFNPPYVPTSDE 126 (209)
T ss_pred eeehhHHhhhcc---CCccEEEECCCcCcCCcc
Confidence 443222233332 678889999998887443
No 421
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=68.17 E-value=46 Score=28.09 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=55.4
Q ss_pred hHhCCCceEEecchH-HHHHHHHHhcCCCC--EEEEcC--CCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCc
Q 024619 66 KLDKADRALCFTSGM-AALAAVTHLLGTGE--EIVAGD--DLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWT 140 (265)
Q Consensus 66 ~~~g~~~~i~~~~g~-~al~~~~~~~~~g~--~viv~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~ 140 (265)
++....+.+++.+.+ .++..+....+.|. +|++.+ |.+.+... ...+...|+++..+.-...-.+.+ ++
T Consensus 105 ~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~l--a~eL~~~GI~vtlI~Dsa~~~~m~----~v 178 (275)
T PRK08335 105 ELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLAL--ANELEFLGIEFEVITDAQLGLFAK----EA 178 (275)
T ss_pred HHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHH--HHHHHHCCCCEEEEeccHHHHHHH----hC
Confidence 333333455555544 56667776665554 566543 55544432 233456688887776333444332 24
Q ss_pred eEEEEec-CCCCcccccc---HHHHHHHHHHcCCEEEEe
Q 024619 141 KLVWVES-PTNPRQQICD---IRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 141 ~~i~~~~-~~np~G~~~~---l~~i~~~a~~~~~~li~D 175 (265)
..|++-. .-...|.+.. --.++-+|++|++++++=
T Consensus 179 d~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~ 217 (275)
T PRK08335 179 TLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVA 217 (275)
T ss_pred CEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 4444411 1122344322 245777889999987763
No 422
>PRK04296 thymidine kinase; Provisional
Probab=68.17 E-value=24 Score=27.73 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC---CCceEEEEecCCCCcccccc
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG---PWTKLVWVESPTNPRQQICD 157 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~~~np~G~~~~ 157 (265)
.++..+..+...|.+|++..|....... ....+...|+++........+++.+.+. .+..+|++...+... ...
T Consensus 18 ~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~--~~~ 94 (190)
T PRK04296 18 ELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLD--KEQ 94 (190)
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCC--HHH
Confidence 4445666666678888776553222110 1234555565544333334444444332 367788887774421 112
Q ss_pred HHHHHHHHHHcCCEEEEeCC
Q 024619 158 IRKIAEMAHAHGALLLVDNS 177 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~~ 177 (265)
+.++++.++..|+.+++=+-
T Consensus 95 v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 95 VVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 56677777778988777543
No 423
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=68.13 E-value=28 Score=24.68 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC---CHHHHHhhcCC--CceEEEEe-cCCCCcccccc
Q 024619 84 AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGP--WTKLVWVE-SPTNPRQQICD 157 (265)
Q Consensus 84 ~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~~~~--~~~~i~~~-~~~np~G~~~~ 157 (265)
..+..+.+.|-++..+..+ . .+++..|+++..+... .-.++.+.+.+ +..+|+-. .+.+......+
T Consensus 16 ~~a~~l~~~G~~i~AT~gT----a----~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~d 87 (112)
T cd00532 16 DLAPKLSSDGFPLFATGGT----S----RVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDED 87 (112)
T ss_pred HHHHHHHHCCCEEEECcHH----H----HHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCC
Confidence 4555555667766654332 2 3334467776665421 12445555654 45554432 22222223456
Q ss_pred HHHHHHHHHHcCCEEEEeC
Q 024619 158 IRKIAEMAHAHGALLLVDN 176 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~ 176 (265)
-..|...|.+++++++.+-
T Consensus 88 g~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 88 GTALLRLARLYKIPVTTPN 106 (112)
T ss_pred hHHHHHHHHHcCCCEEECH
Confidence 7899999999999998873
No 424
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=68.04 E-value=29 Score=24.78 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHhhcCCCCeEEEeecCC-CHHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHc---CCEEEEeCCcCCCCC
Q 024619 109 LLSRVTPKTGVVVKRVNTC-DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAH---GALLLVDNSIMSPVL 183 (265)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~-d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~---~~~li~D~~~~~~~~ 183 (265)
.+...++..|.+++..... .++++.+.+ ..++.+|.++.... .....+.++++.+++. ++.+++=+.+.....
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~--~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~ 95 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLT--THMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDF 95 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc--ccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhH
Confidence 3456678889998876543 456665555 46788888765522 2345678888888886 345555444332211
Q ss_pred cCCCCCCccEEEe
Q 024619 184 SRPLELGADIVMH 196 (265)
Q Consensus 184 ~~~~~~~~di~~~ 196 (265)
......+.|.++.
T Consensus 96 ~~~~~~G~D~~~~ 108 (119)
T cd02067 96 KFLKEIGVDAYFG 108 (119)
T ss_pred HHHHHcCCeEEEC
Confidence 1222345565544
No 425
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.70 E-value=15 Score=27.62 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=51.3
Q ss_pred EEEEcCC---CCCChHHHHHhhcCCCCeEEEeecCC-CHHH-HHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC
Q 024619 95 EIVAGDD---LYGGTDRLLSRVTPKTGVVVKRVNTC-DLDE-VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG 169 (265)
Q Consensus 95 ~viv~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~-l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~ 169 (265)
+|++..+ +|..-...+...++..|.+++..... ++++ +.+++.++..+|.+|+-+- |.....+++++.+++.|
T Consensus 14 rvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g--~h~~l~~~lve~lre~G 91 (143)
T COG2185 14 RVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDG--GHLTLVPGLVEALREAG 91 (143)
T ss_pred eEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccc--hHHHHHHHHHHHHHHhC
Confidence 4555444 33333444567788899999988754 4444 5566678899999887642 44556799999999987
Q ss_pred C
Q 024619 170 A 170 (265)
Q Consensus 170 ~ 170 (265)
.
T Consensus 92 ~ 92 (143)
T COG2185 92 V 92 (143)
T ss_pred C
Confidence 5
No 426
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=67.59 E-value=42 Score=29.27 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=43.0
Q ss_pred EcCCCCCChHH--HHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc--ccHHHHHHHHHHcCCEEE
Q 024619 98 AGDDLYGGTDR--LLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI--CDIRKIAEMAHAHGALLL 173 (265)
Q Consensus 98 v~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~--~~l~~i~~~a~~~~~~li 173 (265)
..++.+..-.. -+..+++..|+....+..+ .+.+.+....... ...+|.... .....+.++|+++|+.+|
T Consensus 91 t~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d-~~~~~~l~~~~~~-----~~~~pc~~c~~~~~~~l~~~A~~~gi~~I 164 (343)
T TIGR03573 91 TVDPGWNTELGVKNLNNLIKKLGFDLHTITIN-PETFRKLQRAYFK-----KVGDPEWPQDHAIFASVYQVALKFNIPLI 164 (343)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCCeEEEeCC-HHHHHHHHHHHHh-----ccCCCchhhhhHHHHHHHHHHHHhCCCEE
Confidence 44555543221 3456677788888777654 3333332221111 222333333 235788999999999999
Q ss_pred EeCCcC
Q 024619 174 VDNSIM 179 (265)
Q Consensus 174 ~D~~~~ 179 (265)
+.+..+
T Consensus 165 l~G~~~ 170 (343)
T TIGR03573 165 IWGENI 170 (343)
T ss_pred EeCCCH
Confidence 987654
No 427
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=67.24 E-value=30 Score=28.94 Aligned_cols=89 Identities=12% Similarity=0.146 Sum_probs=52.9
Q ss_pred HHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeec--CCCHHHHHhhcCCCceEEEEecCCCCcccc----ccH
Q 024619 86 VTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPWTKLVWVESPTNPRQQI----CDI 158 (265)
Q Consensus 86 ~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~~~l~~~~~~~~~~i~~~~~~np~G~~----~~l 158 (265)
+..+.+.| |-|++++--+..... +...++..|+.++.+= ..+.+.++.........|++.+....||.- ..+
T Consensus 112 ~~~~~~aGvdgviipDLP~ee~~~-~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~ 190 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLPYEESDY-LISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKL 190 (263)
T ss_pred HHHHHHcCCeEEEecCCCHHHHHH-HHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHH
Confidence 34444555 677776665433332 3356677787777653 224566665554444466665555678864 236
Q ss_pred HHHHHHHHHc-CCEEEEe
Q 024619 159 RKIAEMAHAH-GALLLVD 175 (265)
Q Consensus 159 ~~i~~~a~~~-~~~li~D 175 (265)
+++++..|++ +.++.+|
T Consensus 191 ~~~i~~ir~~t~~Pi~vG 208 (263)
T CHL00200 191 KKLIETIKKMTNKPIILG 208 (263)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 7777777765 6677765
No 428
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=66.60 E-value=6.3 Score=37.10 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=30.6
Q ss_pred EEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcC
Q 024619 143 VWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 143 i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~ 179 (265)
+..=.|++.-|.-.+++++++.|+++|+-||+|-+++
T Consensus 201 ~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~ 237 (628)
T COG0296 201 TGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPN 237 (628)
T ss_pred ceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 3444566666777889999999999999999999986
No 429
>PLN02476 O-methyltransferase
Probab=66.55 E-value=51 Score=27.83 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=27.5
Q ss_pred CceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 024619 139 WTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185 (265)
Q Consensus 139 ~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~ 185 (265)
...+|++... ......-++.+.++.+. |..+++|++...|.+..
T Consensus 194 ~FD~VFIDa~--K~~Y~~y~e~~l~lL~~-GGvIV~DNvL~~G~V~d 237 (278)
T PLN02476 194 SYDFAFVDAD--KRMYQDYFELLLQLVRV-GGVIVMDNVLWHGRVAD 237 (278)
T ss_pred CCCEEEECCC--HHHHHHHHHHHHHhcCC-CcEEEEecCccCCcccC
Confidence 4667777654 22223335566665554 77889999987776643
No 430
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=66.35 E-value=17 Score=26.96 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=46.8
Q ss_pred CCCChHHHHHhhcCCCCeEEEeecCC-CHHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCC
Q 024619 102 LYGGTDRLLSRVTPKTGVVVKRVNTC-DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA 170 (265)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~ 170 (265)
.|.--...+...++..|.+++..-.+ .++++.++. ..++.+|.+++-. +.....++++.+.+++.|.
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~--~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLY--GHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--ccCHHHHHHHHHHHHHCCC
Confidence 33333444556778899999998765 567766655 4688888887664 2334568999999999864
No 431
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=64.61 E-value=56 Score=28.04 Aligned_cols=97 Identities=23% Similarity=0.190 Sum_probs=60.9
Q ss_pred eEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCC-CceEEEE----
Q 024619 73 ALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGP-WTKLVWV---- 145 (265)
Q Consensus 73 ~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~-~~~~i~~---- 145 (265)
.+++++|+.=+ +++..+++.|..|++-+.-..+....+ ...-.++...|+.|-+.+.+.+.+ ++.+|+-
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v----~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~ 77 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIAL----LKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAAS 77 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHh----hhccCceEEeccccHHHHHHHHHhcCCCEEEECccc
Confidence 36677776444 578888889977776666555665333 222157788888898888888763 4544432
Q ss_pred ----ecCCCCccccc----cHHHHHHHHHHcCCEEE
Q 024619 146 ----ESPTNPRQQIC----DIRKIAEMAHAHGALLL 173 (265)
Q Consensus 146 ----~~~~np~G~~~----~l~~i~~~a~~~~~~li 173 (265)
++..+|.=... -...|++.++++|+.=+
T Consensus 78 ~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~ 113 (329)
T COG1087 78 ISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKF 113 (329)
T ss_pred cccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEE
Confidence 34444432221 13678999999997533
No 432
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=64.48 E-value=13 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=24.8
Q ss_pred HHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 130 DEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 130 ~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
+.+++.+..++.+|+++.-. .+.+.+.++|++++++|+.=
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~------~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGL------EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT---------HHHHHHHHHCT--EEEE
T ss_pred HHHHHHhCCCCCEEEEECcC------CCCHHHHHHHHHhCCcEEEc
Confidence 44555566788888887654 35689999999999988753
No 433
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=64.38 E-value=17 Score=28.88 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=30.5
Q ss_pred HHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 132 VASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 132 l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
|.++..=++..|+-+ .-|+.|.....+++.++|++||+.++.
T Consensus 149 LarlAGl~Pa~VicE-i~~~dG~mar~~~~~~fa~~h~l~~it 190 (203)
T COG0108 149 LARLAGLKPAGVICE-IMNDDGTMARLPELEEFAKEHGLPVIT 190 (203)
T ss_pred HHHHcCCCCcEEEEE-EeCCCccccChHHHHHHHHHcCCcEEE
Confidence 333333345555544 447799999999999999999998874
No 434
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=64.00 E-value=30 Score=29.44 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=43.2
Q ss_pred EcCCCCCChHHHHHhhcCC--CCeEEEeecCC-CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 98 AGDDLYGGTDRLLSRVTPK--TGVVVKRVNTC-DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 98 v~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~-d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
.--++|++.. ++-+. -..-++.+|.. -++.+++....+++.+++-+...+ ..+.++|.++|+++|+.++=
T Consensus 49 ~G~~~y~sv~----dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~---~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 49 LGLPVFNTVA----EAVEATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIP---VLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred eCeeccCCHH----HHhhccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCC---HHHHHHHHHHHHHcCCEEEC
Confidence 3445666664 33333 35555566644 356667666677877655433221 22335899999999998874
Q ss_pred eCC
Q 024619 175 DNS 177 (265)
Q Consensus 175 D~~ 177 (265)
=.+
T Consensus 122 PNc 124 (291)
T PRK05678 122 PNC 124 (291)
T ss_pred CCC
Confidence 433
No 435
>smart00642 Aamy Alpha-amylase domain.
Probab=63.93 E-value=7.1 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.3
Q ss_pred ccccccHHHHHHHHHHcCCEEEEeCCcC
Q 024619 152 RQQICDIRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 152 ~G~~~~l~~i~~~a~~~~~~li~D~~~~ 179 (265)
-|...+++++++.|+++|+.|+.|-+.-
T Consensus 66 ~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 66 FGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3667789999999999999999998743
No 436
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=63.92 E-value=74 Score=28.02 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=39.2
Q ss_pred EEecchHHHHHHHHHhcCCCC--EEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEec
Q 024619 74 LCFTSGMAALAAVTHLLGTGE--EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVES 147 (265)
Q Consensus 74 i~~~~g~~al~~~~~~~~~g~--~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 147 (265)
+++.+|..+-.++..+.+.++ .|++.+-.-....... ......+++...++..|.+++.+.+.+. .+|+-+.
T Consensus 2 lvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~l~~~~~~~-dvVin~~ 75 (386)
T PF03435_consen 2 LVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA-EKLLGDRVEAVQVDVNDPESLAELLRGC-DVVINCA 75 (386)
T ss_dssp EEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH-T--TTTTEEEEE--TTTHHHHHHHHTTS-SEEEE-S
T ss_pred EEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH-hhccccceeEEEEecCCHHHHHHHHhcC-CEEEECC
Confidence 566667655556666665553 6776554432222111 1114467888889999999988887654 6555443
No 437
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=63.69 E-value=33 Score=28.59 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=51.8
Q ss_pred EEecchH-HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-CCceEEEE-ecCCC
Q 024619 74 LCFTSGM-AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-PWTKLVWV-ESPTN 150 (265)
Q Consensus 74 i~~~~g~-~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-~~~~~i~~-~~~~n 150 (265)
|++.+|+ ++-.++..+.+.|..|+++.-+-... ......|...+.....|.+.+.+.+. .++.+|+- +||.
T Consensus 3 ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~-----~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPf- 76 (256)
T TIGR00715 3 VLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGK-----HLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPF- 76 (256)
T ss_pred EEEEechHHHHHHHHHHHhCCCeEEEEEccCCcc-----ccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHH-
Confidence 5566665 77667777777787777543322121 22233444455566667777877776 34665442 2232
Q ss_pred CccccccH-HHHHHHHHHcCCEEE
Q 024619 151 PRQQICDI-RKIAEMAHAHGALLL 173 (265)
Q Consensus 151 p~G~~~~l-~~i~~~a~~~~~~li 173 (265)
...+ +.+.+.|++.|+..+
T Consensus 77 ----A~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 77 ----AAQITTNATAVCKELGIPYV 96 (256)
T ss_pred ----HHHHHHHHHHHHHHhCCcEE
Confidence 1122 567788888887654
No 438
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.62 E-value=1e+02 Score=26.90 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=65.9
Q ss_pred eEEecchH--HHHHHHHHhcC--CCCEEEEcCCCCCChHHHH---HhhcCCC-CeEEEeecCCCHHHHHhhcCCCceEEE
Q 024619 73 ALCFTSGM--AALAAVTHLLG--TGEEIVAGDDLYGGTDRLL---SRVTPKT-GVVVKRVNTCDLDEVASAIGPWTKLVW 144 (265)
Q Consensus 73 ~i~~~~g~--~al~~~~~~~~--~g~~viv~~~~~~~~~~~~---~~~~~~~-g~~~~~~~~~d~~~l~~~~~~~~~~i~ 144 (265)
.+.++.|+ +-..-+..+++ +|-.+++-+.+|....... +..-+.+ +..++-=++.+.+..++++.....+|-
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 44556564 33455555654 4633444455554443332 1221222 345555567788888888875555443
Q ss_pred -------EecCCCCcccccc----HHHHHHHHHHcCCEEEEeCCc-CCCCCcCCCCCCcc
Q 024619 145 -------VESPTNPRQQICD----IRKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGAD 192 (265)
Q Consensus 145 -------~~~~~np~G~~~~----l~~i~~~a~~~~~~li~D~~~-~~~~~~~~~~~~~d 192 (265)
+|...-.+|.-.| +.+.++.|+++|+.+|.|+-. ..|.+...+..|.|
T Consensus 178 VGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd 237 (346)
T PRK05096 178 VGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGAD 237 (346)
T ss_pred EcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCC
Confidence 2333344554444 567778888999999999653 33333333344444
No 439
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=63.56 E-value=85 Score=26.00 Aligned_cols=79 Identities=9% Similarity=0.039 Sum_probs=47.3
Q ss_pred EEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCC-ceEEEEecCCCCccccccHHHHHHHHHHcCCEEE
Q 024619 96 IVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173 (265)
Q Consensus 96 viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~-~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li 173 (265)
-.++.|..+.....+..+.+..++.+..-. ..+++++++.+..+ ..+|.+. + ...|.+.+..+++++|+++|+.+.
T Consensus 158 ~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k-~-~~~GGi~~~~~~~~~A~~~gi~~~ 235 (265)
T cd03315 158 DYVEQPLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIK-T-AKTGGLTKAQRVLAVAEALGLPVM 235 (265)
T ss_pred CEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEe-c-ccccCHHHHHHHHHHHHHcCCcEE
Confidence 356667654444444444444444433222 33677777766533 4444433 3 346888888999999999998877
Q ss_pred EeC
Q 024619 174 VDN 176 (265)
Q Consensus 174 ~D~ 176 (265)
.=.
T Consensus 236 ~~~ 238 (265)
T cd03315 236 VGS 238 (265)
T ss_pred ecC
Confidence 653
No 440
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=63.18 E-value=78 Score=26.61 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCC--CEEEEcCCCCCChHHHHHhhcCCCCeE-EEeecCCCHHHHHhhcCCCceEEEEecCCCCccccc
Q 024619 80 MAALAAVTHLLGTG--EEIVAGDDLYGGTDRLLSRVTPKTGVV-VKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQIC 156 (265)
Q Consensus 80 ~~al~~~~~~~~~g--~~viv~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~ 156 (265)
.-+..++..|++.| ..|-+.+....... .......+.. ++..|+.|.+++.+++..-..++-+.++..+.|...
T Consensus 8 flG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~ 84 (280)
T PF01073_consen 8 FLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYP 84 (280)
T ss_pred HHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccCccc
Confidence 35556888899888 45554433222211 0112333333 788889999999999875333334444545555221
Q ss_pred ----------cHHHHHHHHHHcCCE
Q 024619 157 ----------DIRKIAEMAHAHGAL 171 (265)
Q Consensus 157 ----------~l~~i~~~a~~~~~~ 171 (265)
--+.|++.|+++++.
T Consensus 85 ~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 85 PEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 137899999999864
No 441
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=62.96 E-value=41 Score=24.29 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=52.1
Q ss_pred hhcCCCCeEEEeecCCCHHHHHhhcC--CCceEEEEecCCCCccccccHHHHHHHHHHcC--CEEEEeCCcCCCCCcC-C
Q 024619 112 RVTPKTGVVVKRVNTCDLDEVASAIG--PWTKLVWVESPTNPRQQICDIRKIAEMAHAHG--ALLLVDNSIMSPVLSR-P 186 (265)
Q Consensus 112 ~~~~~~g~~~~~~~~~d~~~l~~~~~--~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~--~~li~D~~~~~~~~~~-~ 186 (265)
..++..|.++...+....++..+.+. .++.+|.++.. +.......++++..|+.+ +.+++=+.+....... .
T Consensus 10 a~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~---~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~ 86 (127)
T cd02068 10 AVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLM---TSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEIL 86 (127)
T ss_pred HHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeec---cccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHh
Confidence 44556677777777666666555554 57888887642 334446788888888875 8888887776543332 2
Q ss_pred CCCCccEEEec
Q 024619 187 LELGADIVMHS 197 (265)
Q Consensus 187 ~~~~~di~~~s 197 (265)
.....|+++.+
T Consensus 87 ~~~~~D~vv~G 97 (127)
T cd02068 87 EEPGVDFVVIG 97 (127)
T ss_pred cCCCCCEEEEC
Confidence 23346666543
No 442
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=62.21 E-value=24 Score=27.54 Aligned_cols=91 Identities=8% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEee--cCCCHHHHHhhcCCCceEEEEecCCCCccccccHHH
Q 024619 83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRV--NTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
+..+..+-..|.+|++..|....... -.......|...... +..++.++.+.+..++.+|.+.-.+..+ .++.+
T Consensus 19 i~~~~~~~~~~~~v~~~kp~~D~R~~-~~~I~s~~g~~~~~~~~~~~~~~~~~~~~~~~~dvI~IDEaQFf~---~~i~~ 94 (176)
T PF00265_consen 19 IRRIHRYEIAGKKVLVFKPAIDTRYG-EDKIVSHDGISLEAIVDPIDNLFEIIDILENDYDVIGIDEAQFFD---EQIVQ 94 (176)
T ss_dssp HHHHHHHHHTT-EEEEEEESTSCCCC-SSEEEHTTSCEEEEESSEESSGGGGGGGCCTTCSEEEESSGGGST---TTHHH
T ss_pred HHHHHHHHhCCCeEEEEEecccCcCC-CCeEEecCCCcccccccchhhHHHHHHHhccCCCEEEEechHhhH---HHHHH
Confidence 34555555567888877665433210 002334456666666 5667777877777778999998777755 56788
Q ss_pred HHHHHHHcCCEEEEeCC
Q 024619 161 IAEMAHAHGALLLVDNS 177 (265)
Q Consensus 161 i~~~a~~~~~~li~D~~ 177 (265)
+++.+..+|+.|++-+-
T Consensus 95 l~~~~~~~g~~Vi~~GL 111 (176)
T PF00265_consen 95 LVEILANKGIPVICAGL 111 (176)
T ss_dssp HHHHHHHTT-EEEEEEE
T ss_pred HHHHHHhCCCeEEEEee
Confidence 89999999999987643
No 443
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=61.99 E-value=21 Score=28.64 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchH--HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe--EEEeecCCCHH
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGM--AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTCDLD 130 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~--~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~d~~ 130 (265)
+...++-..+.+..++..++-+++++ .++.....+-+ +.+|+.-+.. +......+...+..|. ++.....+-.+
T Consensus 31 ~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~-~g~i~tiE~~-~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 31 PETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPE-DGKITTIEID-PERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTT-TSEEEEEESS-HHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcc-cceEEEecCc-HHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 44556667777888888888887764 66655555544 4455543332 2223333344444443 22222222233
Q ss_pred HHHhhcC----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcCC
Q 024619 131 EVASAIG----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSRP 186 (265)
Q Consensus 131 ~l~~~~~----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~~ 186 (265)
.+.+... ....+|++... .......++.+.++.+ -|.+|++|++...|.+..+
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~-~ggvii~DN~l~~G~V~~~ 165 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDAD--KRNYLEYFEKALPLLR-PGGVIIADNVLWRGSVADP 165 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEEST--GGGHHHHHHHHHHHEE-EEEEEEEETTTGGGGGGST
T ss_pred hHHHHHhccCCCceeEEEEccc--ccchhhHHHHHhhhcc-CCeEEEEccccccceecCc
Confidence 3333332 24678888764 3333344566666554 3889999999877755433
No 444
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=61.96 E-value=26 Score=25.82 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCCeEEEeecCC-CHHHHHhhc-CCCceEEEEecCCCCccccccHHHHHHHHHHcCC---EEEEeCC
Q 024619 107 DRLLSRVTPKTGVVVKRVNTC-DLDEVASAI-GPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGA---LLLVDNS 177 (265)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~-d~~~l~~~~-~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~---~li~D~~ 177 (265)
.......++..|.+++..-.+ .++++.++. ..++.+|.+++-.. .....++++.+..++.|+ .+++=++
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t--~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYG--HGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccc--CCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 344456678899999988765 566665554 57888888876532 345567899999988754 4444443
No 445
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=61.77 E-value=1.1e+02 Score=26.62 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHHhHhCCCceEEe--cchH---HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHh
Q 024619 61 ESLLAKLDKADRALCF--TSGM---AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVAS 134 (265)
Q Consensus 61 ~~~l~~~~g~~~~i~~--~~g~---~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~ 134 (265)
-+.+.+.+|.+..+.+ +.+. +++..+..+ +.-+...++.|........+..+.+..++.+..-. ..+++++++
T Consensus 179 v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l-~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~ 257 (357)
T cd03316 179 VRAVREAVGPDVDLMVDANGRWDLAEAIRLARAL-EEYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRD 257 (357)
T ss_pred HHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHh-CccCCCeEcCCCCccCHHHHHHHHHhCCCCEEeccccccHHHHHH
Confidence 3445555665543333 2221 333333333 22233467777665444444344444444332222 336777777
Q ss_pred hcCCC-ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeC
Q 024619 135 AIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176 (265)
Q Consensus 135 ~~~~~-~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~ 176 (265)
.+..+ ..+|-+. + ...|.+.+..+++++|+++|+.++.=.
T Consensus 258 ~i~~~~~d~v~~k-~-~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 258 LLEAGAVDIIQPD-V-TKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHhCCCCEEecC-c-cccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 77543 3333322 2 446788888999999999999876644
No 446
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=61.49 E-value=81 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=26.7
Q ss_pred CHHHHH---hhcC-CCceEEEEecCCCCcccc-ccHHHHHHHHHH
Q 024619 128 DLDEVA---SAIG-PWTKLVWVESPTNPRQQI-CDIRKIAEMAHA 167 (265)
Q Consensus 128 d~~~l~---~~~~-~~~~~i~~~~~~np~G~~-~~l~~i~~~a~~ 167 (265)
|++... +++. ..+.+|+=.-..|+||.- .|-..++++|.+
T Consensus 121 dp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s 165 (232)
T KOG4589|consen 121 DPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDS 165 (232)
T ss_pred CHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHH
Confidence 554443 3343 345566666677999976 577888999876
No 447
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=61.28 E-value=14 Score=24.61 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=30.7
Q ss_pred CChh-HHHHHHHHHhHhCCCceEEecchH-HHHHHHHHh-cCCCCEEEEcCCCC
Q 024619 53 GNPT-RDALESLLAKLDKADRALCFTSGM-AALAAVTHL-LGTGEEIVAGDDLY 103 (265)
Q Consensus 53 g~~~-~~~l~~~l~~~~g~~~~i~~~~g~-~al~~~~~~-~~~g~~viv~~~~~ 103 (265)
|.|. +++|.+.+.+.||.+...-+.++. .....+..+ .++|+ ++..+..+
T Consensus 17 ~~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rgK-fi~~~~g~ 69 (78)
T PF10678_consen 17 GNPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERGK-FIPSDDGF 69 (78)
T ss_pred CCCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcCC-EeecCCCE
Confidence 4554 889999999999999666555543 223344444 45555 44444444
No 448
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=60.83 E-value=55 Score=33.13 Aligned_cols=80 Identities=8% Similarity=0.139 Sum_probs=52.1
Q ss_pred EEEEcCCCCCChHHHHHhhcCCC-CeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcccc------------------
Q 024619 95 EIVAGDDLYGGTDRLLSRVTPKT-GVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQI------------------ 155 (265)
Q Consensus 95 ~viv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~------------------ 155 (265)
.|.+.++.-.. ...+++.. +++.+.++..|.+++.+.+.+ ..+|+.+.|....-.+
T Consensus 608 lV~VaD~~~~~----a~~la~~~~~~~~v~lDv~D~e~L~~~v~~-~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~ 682 (1042)
T PLN02819 608 HVIVASLYLKD----AKETVEGIENAEAVQLDVSDSESLLKYVSQ-VDVVISLLPASCHAVVAKACIELKKHLVTASYVS 682 (1042)
T ss_pred EEEEECCCHHH----HHHHHHhcCCCceEEeecCCHHHHHHhhcC-CCEEEECCCchhhHHHHHHHHHcCCCEEECcCCH
Confidence 36666654222 22333333 667778888899999887765 7777777775432111
Q ss_pred ccHHHHHHHHHHcCCEEEEeCCcC
Q 024619 156 CDIRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 156 ~~l~~i~~~a~~~~~~li~D~~~~ 179 (265)
.+++++.+.|++.|+.++.+--+.
T Consensus 683 ~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 683 EEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred HHHHHHHHHHHHcCCEEEECCccC
Confidence 235788899999999998876543
No 449
>PRK05993 short chain dehydrogenase; Provisional
Probab=60.62 E-value=49 Score=27.44 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=36.2
Q ss_pred eEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC
Q 024619 73 ALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137 (265)
Q Consensus 73 ~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~ 137 (265)
.+++++|+..+ .++..+.+.|..|++..-.-.. .... ...+++...+|+.|.+++++.+.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~----~~~l-~~~~~~~~~~Dl~d~~~~~~~~~ 67 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEED----VAAL-EAEGLEAFQLDYAEPESIAALVA 67 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHH-HHCCceEEEccCCCHHHHHHHHH
Confidence 56666666555 4667778889887765432111 1122 22467777888888777666543
No 450
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=60.52 E-value=34 Score=28.44 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEe-ec-CCCHHHHHhhcCCCceEEEEecCCCCcccc----ccH
Q 024619 86 VTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKR-VN-TCDLDEVASAIGPWTKLVWVESPTNPRQQI----CDI 158 (265)
Q Consensus 86 ~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~-~~-~~d~~~l~~~~~~~~~~i~~~~~~np~G~~----~~l 158 (265)
+..+.+.| |-|++++-.+... ..+...++..|+.++. +. ..+.+.+++........|++.+.+..||.- .++
T Consensus 108 ~~~~~~aGvdgviipDlp~ee~-~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~ 186 (256)
T TIGR00262 108 YAKCKEVGVDGVLVADLPLEES-GDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASAL 186 (256)
T ss_pred HHHHHHcCCCEEEECCCChHHH-HHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhH
Confidence 34444444 5666655443222 2233555667766553 32 334566655554434355554444667753 245
Q ss_pred HHHHHHHHHc-CCEEEEeC
Q 024619 159 RKIAEMAHAH-GALLLVDN 176 (265)
Q Consensus 159 ~~i~~~a~~~-~~~li~D~ 176 (265)
.+.++..+++ +..+++|.
T Consensus 187 ~~~i~~lr~~~~~pi~vgf 205 (256)
T TIGR00262 187 NELVKRLKAYSAKPVLVGF 205 (256)
T ss_pred HHHHHHHHhhcCCCEEEeC
Confidence 5555555554 55666653
No 451
>CHL00194 ycf39 Ycf39; Provisional
Probab=59.64 E-value=62 Score=27.53 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=51.8
Q ss_pred EEecchH--HHHHHHHHhcCCCCEEEE-cCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619 74 LCFTSGM--AALAAVTHLLGTGEEIVA-GDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN 150 (265)
Q Consensus 74 i~~~~g~--~al~~~~~~~~~g~~viv-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n 150 (265)
+++++|+ -+-.++..+++.|.+|.+ .... . .. ......+++++..+..|.+.+.+++.. +.+|+-.....
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~-~-~~----~~l~~~~v~~v~~Dl~d~~~l~~al~g-~d~Vi~~~~~~ 75 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRNL-R-KA----SFLKEWGAELVYGDLSLPETLPPSFKG-VTAIIDASTSR 75 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcCh-H-Hh----hhHhhcCCEEEECCCCCHHHHHHHHCC-CCEEEECCCCC
Confidence 4455544 444577778888877664 3321 1 11 111234788888899999999888764 44444322211
Q ss_pred Ccc--ccc--c---HHHHHHHHHHcCC
Q 024619 151 PRQ--QIC--D---IRKIAEMAHAHGA 170 (265)
Q Consensus 151 p~G--~~~--~---l~~i~~~a~~~~~ 170 (265)
+.. ... + ...+++.|++.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~aa~~~gv 102 (317)
T CHL00194 76 PSDLYNAKQIDWDGKLALIEAAKAAKI 102 (317)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHcCC
Confidence 111 111 1 2578899999886
No 452
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.56 E-value=1.1e+02 Score=26.06 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=47.7
Q ss_pred CEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCC-ceEEEEecCCCCccccccHHHHHHHHHHcCCE
Q 024619 94 EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGAL 171 (265)
Q Consensus 94 ~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~-~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~ 171 (265)
+...+++|..+.....+..+.+..++++..-. ..+++++++.+... ..+|.+. + ...|.+.+..+++++|+++|+.
T Consensus 204 ~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~-~-~~~GGi~~~~~~~~~a~~~gi~ 281 (316)
T cd03319 204 GVELIEQPVPAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIK-L-MKTGGLTEALRIADLARAAGLK 281 (316)
T ss_pred CCCEEECCCCCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe-c-cccCCHHHHHHHHHHHHHcCCC
Confidence 33456777654433344444444444432222 34677777777644 4444433 4 3368888889999999999998
Q ss_pred EEEe
Q 024619 172 LLVD 175 (265)
Q Consensus 172 li~D 175 (265)
++.=
T Consensus 282 ~~~~ 285 (316)
T cd03319 282 VMVG 285 (316)
T ss_pred EEEE
Confidence 7765
No 453
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.29 E-value=86 Score=27.36 Aligned_cols=45 Identities=9% Similarity=0.010 Sum_probs=28.5
Q ss_pred CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEE
Q 024619 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173 (265)
Q Consensus 128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li 173 (265)
++.++.+.+..+..-++..-+ +..|.+.+..+++++|+++|+.+.
T Consensus 248 ~~~~~~~~i~~~~~d~i~~~~-~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 248 GPEEMFKALSAGACDLVMPDL-MKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred CHHHHHHHHHhCCCCeEecCH-hhhCCHHHHHHHHHHHHHcCCeec
Confidence 455555555433222222223 446778888999999999999875
No 454
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=58.29 E-value=83 Score=24.33 Aligned_cols=94 Identities=12% Similarity=0.181 Sum_probs=51.7
Q ss_pred HhHhCCCceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC-----CC
Q 024619 65 AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG-----PW 139 (265)
Q Consensus 65 ~~~~g~~~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~-----~~ 139 (265)
.+.||.. +++..+|++.-...+..+..-|+ .-.+-..+.+-..|+---|.+.++.+ ++
T Consensus 79 e~iyGKR-vIiiGGGAqVsqVA~GAIsEADR----------------HNiRGERISvDTiPlVGEE~laEAVkAV~rLpR 141 (218)
T COG1707 79 EEIYGKR-VIIIGGGAQVSQVARGAISEADR----------------HNIRGERISVDTIPLVGEEELAEAVKAVARLPR 141 (218)
T ss_pred HHHhCcE-EEEECCchhHHHHHHhhcchhhh----------------cccccceeeeecccccChHHHHHHHHHHhcccc
Confidence 3444443 77777877665555444433221 00122234455555555566666654 44
Q ss_pred ceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619 140 TKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSI 178 (265)
Q Consensus 140 ~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~ 178 (265)
+.++++. -+-+.|.+. +++-++-++||+++|.=...
T Consensus 142 v~iLVLA-GslMGGkIt--eaVk~lr~~hgI~VISL~M~ 177 (218)
T COG1707 142 VGILVLA-GSLMGGKIT--EAVKELREEHGIPVISLNMF 177 (218)
T ss_pred ceeEEEe-cccccchHH--HHHHHHHHhcCCeEEEeccC
Confidence 4444443 334556664 56667778899999987653
No 455
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=58.20 E-value=15 Score=31.32 Aligned_cols=93 Identities=11% Similarity=0.131 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCC--eEEEeecC--CCHHHHHhhcCCC-ceEEEEecCCCCcccc
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTG--VVVKRVNT--CDLDEVASAIGPW-TKLVWVESPTNPRQQI 155 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g--~~~~~~~~--~d~~~l~~~~~~~-~~~i~~~~~~np~G~~ 155 (265)
+-+.....+++.-..|.+.+|....-...|....+..| +.++--++ .+++.+++.+.++ +.++++- + |-.|.+
T Consensus 137 elid~y~~li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK-~-NQigTv 214 (295)
T PF00113_consen 137 ELIDYYKDLIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLK-P-NQIGTV 214 (295)
T ss_dssp HHHHHHHHHHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE--H-HHHSSH
T ss_pred HHHHHHHHHHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhh-h-hhhHHH
Confidence 33456667776656777999988877778877777766 67766553 4899999988755 3344442 3 457899
Q ss_pred ccHHHHHHHHHHcCCEEEEe
Q 024619 156 CDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 156 ~~l~~i~~~a~~~~~~li~D 175 (265)
.+.-+.+++|+++|..+++=
T Consensus 215 te~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 215 TETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp HHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHCCceeecc
Confidence 99999999999999877664
No 456
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=58.11 E-value=34 Score=27.48 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=47.7
Q ss_pred cchHHHH-HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCC----CCeEEEeecCCCHHHHHhhcC----CCceEEEEec
Q 024619 77 TSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPK----TGVVVKRVNTCDLDEVASAIG----PWTKLVWVES 147 (265)
Q Consensus 77 ~~g~~al-~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~d~~~l~~~~~----~~~~~i~~~~ 147 (265)
.+|+... +.++.++.+..+|+--+..-.... +...+. ..++++.-+..|++.+.+... .++-+|+..+
T Consensus 43 ~GGSli~~A~ml~~~~~~~~VigiDIdir~~~---~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs 119 (206)
T PF04989_consen 43 HGGSLIFWASMLELLGGKGKVIGIDIDIRPHN---RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDS 119 (206)
T ss_dssp TSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS
T ss_pred CCchHHHHHHHHHHhCCCceEEEEeCCcchhc---hHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECC
Confidence 3455444 356667755455553333211111 122233 678888777778888776532 3455777777
Q ss_pred CCCCccccccHHHHHHHHHHcCCEEEEeCC
Q 024619 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNS 177 (265)
Q Consensus 148 ~~np~G~~~~l~~i~~~a~~~~~~li~D~~ 177 (265)
-|...=.+..++....+...=+-+||+|-.
T Consensus 120 ~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 120 SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp ----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 766555556677777777764444566633
No 457
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=57.96 E-value=18 Score=23.94 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=29.9
Q ss_pred CChh-HHHHHHHHHhHhCCCceEEecchHHHH--HHHHH-hcCCCCEEEEcCCCC
Q 024619 53 GNPT-RDALESLLAKLDKADRALCFTSGMAAL--AAVTH-LLGTGEEIVAGDDLY 103 (265)
Q Consensus 53 g~~~-~~~l~~~l~~~~g~~~~i~~~~g~~al--~~~~~-~~~~g~~viv~~~~~ 103 (265)
|++. +++|++.+.+.||.+...-+.|. +.+ ..+.. +.++|+ ++-.+..+
T Consensus 15 ~~~~t~~~L~~~i~~~FG~~arFhTCSa-~~m~a~~Li~FL~~kgK-fi~~~~gf 67 (77)
T TIGR03853 15 GEPYTRESLKAAIEQKFGEDARFHTCSA-EGMTADELLQFLLKKGK-FIESDGGF 67 (77)
T ss_pred CCCcCHHHHHHHHHHHhCCCceEeeccc-ccCCHHHHHHHHHHCCC-EeecCCcE
Confidence 5554 88999999999998855444444 333 34444 455565 44334333
No 458
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=57.95 E-value=43 Score=30.85 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=53.4
Q ss_pred hhcCCCC-eEEEeecCC----CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHc--CCEEEEeCCcCCCCC
Q 024619 112 RVTPKTG-VVVKRVNTC----DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH--GALLLVDNSIMSPVL 183 (265)
Q Consensus 112 ~~~~~~g-~~~~~~~~~----d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~--~~~li~D~~~~~~~~ 183 (265)
..++..| .++..+|.. +.+++.+.+. .++.+|.++.. |.......++++.+|+. ++.+|+=+.|.....
T Consensus 30 a~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~---t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~ 106 (497)
T TIGR02026 30 GALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAI---TPAIYIACETLKFARERLPNAIIVLGGIHPTFMF 106 (497)
T ss_pred HHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecC---cccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCH
Confidence 4456677 577777632 5567766664 46888887643 44555678899999987 899999888865433
Q ss_pred cCCCC--CCccEEEec
Q 024619 184 SRPLE--LGADIVMHS 197 (265)
Q Consensus 184 ~~~~~--~~~di~~~s 197 (265)
...+. ..+|+++.+
T Consensus 107 ~~~l~~~p~vD~Vv~G 122 (497)
T TIGR02026 107 HQVLTEAPWIDFIVRG 122 (497)
T ss_pred HHHHhcCCCccEEEeC
Confidence 32221 245666554
No 459
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=57.95 E-value=59 Score=23.27 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=34.4
Q ss_pred CCeEEEeecC---CCHHHHHhhcCC-CceEEEEecCC--CCccccccHHHHHHHHHHcCCEEEE
Q 024619 117 TGVVVKRVNT---CDLDEVASAIGP-WTKLVWVESPT--NPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 117 ~g~~~~~~~~---~d~~~l~~~~~~-~~~~i~~~~~~--np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
.|+++..++. ..-.++.+.+.+ +..+|+ +.|+ ...+...|-..|...|-+++++++.
T Consensus 44 ~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VI-nt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 44 TGLTVNRMKSGPLGGDQQIGALIAEGEIDAVI-FFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hCCcEEEEecCCCCchhHHHHHHHcCceeEEE-EcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 5666665532 222446666654 445443 3332 3333356788999999999998875
No 460
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=57.61 E-value=42 Score=28.46 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=42.9
Q ss_pred EEcCCCCCChHHHHHhhcCC--CCeEEEeecCC-CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEE
Q 024619 97 VAGDDLYGGTDRLLSRVTPK--TGVVVKRVNTC-DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLL 173 (265)
Q Consensus 97 iv~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~-d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li 173 (265)
+.--|+|++.. ++.+. -..-++.+|.. -++.+++.....++.+++-+...+. .+.++|.++|+++|+.++
T Consensus 46 v~G~~~y~sv~----dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e---~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 46 VLGLPVFDSVK----EAVEETGANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPV---HDMLKVKRYMEESGTRLI 118 (286)
T ss_pred ecCeeccCCHH----HHhhccCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCH---HHHHHHHHHHHHcCCEEE
Confidence 33445666664 33232 24555555543 3566666666777766554332211 145799999999999887
Q ss_pred EeCC
Q 024619 174 VDNS 177 (265)
Q Consensus 174 ~D~~ 177 (265)
==.+
T Consensus 119 GPNc 122 (286)
T TIGR01019 119 GPNC 122 (286)
T ss_pred CCCC
Confidence 4333
No 461
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=57.55 E-value=62 Score=27.11 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=48.4
Q ss_pred HHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeecC--CCHHHHHhhcCCCceEEEEecCCCCcccccc----HH
Q 024619 87 THLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNT--CDLDEVASAIGPWTKLVWVESPTNPRQQICD----IR 159 (265)
Q Consensus 87 ~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~----l~ 159 (265)
..+.+.| |-+++++--..... .+...++..|+.++++-. .+.+.+++........|++.+.+-.||.-.+ +.
T Consensus 116 ~~~~~~GvdGlivpDLP~ee~~-~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~ 194 (265)
T COG0159 116 RRAKEAGVDGLLVPDLPPEESD-ELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVK 194 (265)
T ss_pred HHHHHcCCCEEEeCCCChHHHH-HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHH
Confidence 3344444 66776554332222 234666777877776532 2445555544444466666666667776644 67
Q ss_pred HHHHHHHHc-CCEEE
Q 024619 160 KIAEMAHAH-GALLL 173 (265)
Q Consensus 160 ~i~~~a~~~-~~~li 173 (265)
++++..|++ +.+++
T Consensus 195 ~~v~~vr~~~~~Pv~ 209 (265)
T COG0159 195 ELVKRVRKYTDVPVL 209 (265)
T ss_pred HHHHHHHHhcCCCeE
Confidence 777777775 34443
No 462
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=57.29 E-value=58 Score=24.39 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHhhcCC-CceEEEEe-cCCCCccccccHHHHHHHHHHcCCEEEEeCC
Q 024619 130 DEVASAIGP-WTKLVWVE-SPTNPRQQICDIRKIAEMAHAHGALLLVDNS 177 (265)
Q Consensus 130 ~~l~~~~~~-~~~~i~~~-~~~np~G~~~~l~~i~~~a~~~~~~li~D~~ 177 (265)
.++.+.+.+ +..+|+-. .|..+.+...|-..|...|-+|+++++..-.
T Consensus 65 ~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 446666654 45554432 2244444456788999999999999987643
No 463
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=57.20 E-value=48 Score=21.08 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=35.2
Q ss_pred HhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 111 SRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 111 ~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
...++..|.++..+... .+.+.. .+..+|++....+.+- -.+.++|.++.++=|-++|.|
T Consensus 11 ~~~L~~~g~~v~~~~~~-~~~l~~---~~~tll~i~~~~~~~~-~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 11 YQLLEEQGVKVERWRKP-YEALEA---DDGTLLVIGPDLRLSE-PEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred HHHHHHCCCeeEEeccc-HHHhCC---CCCEEEEEeCCCCCCc-hHHHHHHHHHHHcCCEEEEeC
Confidence 35566678888877754 454432 3444444443324322 245788888888656666654
No 464
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=57.00 E-value=70 Score=23.75 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHhhcCCCCeEEEeecCC-CHHHHHhhcC-CCceEEEEecCCCCccccccHHHHHHHHHHc---CCEEEEeC
Q 024619 108 RLLSRVTPKTGVVVKRVNTC-DLDEVASAIG-PWTKLVWVESPTNPRQQICDIRKIAEMAHAH---GALLLVDN 176 (265)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~-d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~---~~~li~D~ 176 (265)
..+...++..|.+++++-.. .++++.+++. .++.+|.++.... .....++++.+..++. ++.+++=+
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~vGG 92 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYVGG 92 (137)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 33456678889999988654 5677666654 6788888766543 2344567777887776 44444433
No 465
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=56.97 E-value=78 Score=27.26 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=56.4
Q ss_pred CEE-EEcCCCCCC---hHHHHHhhcCCCCeEEEeecCC---CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHH
Q 024619 94 EEI-VAGDDLYGG---TDRLLSRVTPKTGVVVKRVNTC---DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAH 166 (265)
Q Consensus 94 ~~v-iv~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~---d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~ 166 (265)
.+| ++-.|.... ..+.+...++..|+++++.... |.....+.+..++.+|++.--+. ...-.+.+...+.
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~---i~s~~~~l~~~a~ 236 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL---IVSAIESLLQVAN 236 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH---HHHHHHHHHHHHH
Confidence 445 555665522 2333567788899999999865 44445555567888888764332 2335688999999
Q ss_pred HcCCEEEEeCCc
Q 024619 167 AHGALLLVDNSI 178 (265)
Q Consensus 167 ~~~~~li~D~~~ 178 (265)
+.+++++.++.-
T Consensus 237 ~~kiPli~sd~~ 248 (322)
T COG2984 237 KAKIPLIASDTS 248 (322)
T ss_pred HhCCCeecCCHH
Confidence 999999998763
No 466
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.88 E-value=68 Score=28.88 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=54.6
Q ss_pred ceEEecchHHHHHHHHHhcCCCCEEEEcCCCC-CChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCC
Q 024619 72 RALCFTSGMAALAAVTHLLGTGEEIVAGDDLY-GGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTN 150 (265)
Q Consensus 72 ~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~n 150 (265)
.++++..|..++.+...+.+.|..|.+.+... ......... +...|+++...+..+ .. ..+..+|+.+ +
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~~--~~----~~~~d~vv~~-~-- 76 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEE-LGELGIELVLGEYPE--EF----LEGVDLVVVS-P-- 76 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHH-HHhcCCEEEeCCcch--hH----hhcCCEEEEC-C--
Confidence 46677777777888888889998888877653 222111112 234466655544433 11 1235555543 2
Q ss_pred CccccccHHHHHHHHHHcCCEEEEeCC
Q 024619 151 PRQQICDIRKIAEMAHAHGALLLVDNS 177 (265)
Q Consensus 151 p~G~~~~l~~i~~~a~~~~~~li~D~~ 177 (265)
|. .+...+...|+++|++++.+-.
T Consensus 77 --g~-~~~~~~~~~a~~~~i~~~~~~~ 100 (450)
T PRK14106 77 --GV-PLDSPPVVQAHKKGIEVIGEVE 100 (450)
T ss_pred --CC-CCCCHHHHHHHHCCCcEEeHHH
Confidence 22 2334578888889998887643
No 467
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.87 E-value=51 Score=24.33 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=48.1
Q ss_pred CCCChHHHHHhhcCCCCeEEEeecCC-CHHHH-HhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcC---CEEEE
Q 024619 102 LYGGTDRLLSRVTPKTGVVVKRVNTC-DLDEV-ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHG---ALLLV 174 (265)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~-d~~~l-~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~---~~li~ 174 (265)
.|.--.......++..|.+++..... +++++ +++...+..+|.+|+-. +.....++++++..++.+ +.++.
T Consensus 14 ~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 14 GHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred ccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 44444445567778899999998865 56665 44456788899987764 234445788888888864 45555
No 468
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=54.72 E-value=1.4e+02 Score=25.72 Aligned_cols=115 Identities=10% Similarity=0.102 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhHhCCCceEEecch----H-HHH-----HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcC----CCCeEE
Q 024619 56 TRDALESLLAKLDKADRALCFTSG----M-AAL-----AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTP----KTGVVV 121 (265)
Q Consensus 56 ~~~~l~~~l~~~~g~~~~i~~~~g----~-~al-----~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~----~~g~~~ 121 (265)
...++++.+.+.||..+++++.+. . ..+ ..+...+++|+.|-+ +|+.+.......+. ..++++
T Consensus 69 ~~~~Le~~L~~~fgLk~~iVvp~~~~~~~~~~vg~~aA~~L~~~l~~~~~IGv---swG~Tl~~~~~~l~~~~~~~~~~v 145 (318)
T PRK15418 69 GCLELENALRQHFSLQHIRVLPALADADIGGRLGIGAAHMLMSLLQPQQLLAV---GFGEATMNTLQHLSGFISSQQIRL 145 (318)
T ss_pred cHHHHHHHHHHHhCCCEEEEEeCCCcccHHHHHHHHHHHHHHHhcCCCCEEEE---cchHHHHHHHHhccccCCCCCCEE
Confidence 367799999999999988887653 1 112 234556788887777 45544433222221 223444
Q ss_pred Eeec--C-CCHHHHHhhcCCCceEEEEecCCCCcc-cc-------ccHHHHHHHHHHcCCEEEE
Q 024619 122 KRVN--T-CDLDEVASAIGPWTKLVWVESPTNPRQ-QI-------CDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 122 ~~~~--~-~d~~~l~~~~~~~~~~i~~~~~~np~G-~~-------~~l~~i~~~a~~~~~~li~ 174 (265)
+.+- + ...+.+. .+..+.+..++..|-.... .. ..++++.+++++.++.++-
T Consensus 146 V~l~Gg~~~~~~~~~-~~~~~~~~~~l~aP~~v~s~e~~~~l~~e~~i~~vl~~~~~~Dial~G 208 (318)
T PRK15418 146 VTLSGGVGPYMTGIG-QLDAACSVSIIPAPLRASSAEIARTLRNENSVRDVMLAAQAADVAIVG 208 (318)
T ss_pred EEcCCCCCcchhhHH-HHhccCCeEEeccCeecCCHHHHHHHHhChHHHHHHHHHHhCCEEEEE
Confidence 4332 1 1112222 2334455566666642111 11 1368888888888877654
No 469
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=54.56 E-value=1.2e+02 Score=26.46 Aligned_cols=78 Identities=12% Similarity=0.039 Sum_probs=43.8
Q ss_pred EEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCCHHHHHhhcCCC-ceEEEEecCCCCccccccHHHHHHHHHHcCCEE
Q 024619 95 EIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCDLDEVASAIGPW-TKLVWVESPTNPRQQICDIRKIAEMAHAHGALL 172 (265)
Q Consensus 95 ~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~-~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~l 172 (265)
...+++|........+..+.+..++.+..=. ..+++++.+.+..+ ..++.+. + ...|.+.+..+++++|+++|+.+
T Consensus 216 ~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d-~-~~~GGit~~~~~~~~a~~~gi~~ 293 (365)
T cd03318 216 VELIEQPVPRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLK-I-AKSGGLRRAQKVAAIAEAAGIAL 293 (365)
T ss_pred cceeeCCCCcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEe-e-cccCCHHHHHHHHHHHHHcCCce
Confidence 3456666554333333344333333322111 23566666666543 3344333 3 23588889999999999999987
Q ss_pred EE
Q 024619 173 LV 174 (265)
Q Consensus 173 i~ 174 (265)
+.
T Consensus 294 ~~ 295 (365)
T cd03318 294 YG 295 (365)
T ss_pred ee
Confidence 75
No 470
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.53 E-value=1.4e+02 Score=26.00 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=29.2
Q ss_pred CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
+++++...+..+..-++-.-+ ...|.+.+..+++++|+++|+.+..-
T Consensus 238 ~~~~~~~~~~~~~~d~v~~d~-~~~GGit~~~~~~~lA~~~gi~~~~h 284 (352)
T cd03325 238 SRWDFKELLEDGAVDIIQPDI-SHAGGITELKKIAAMAEAYDVALAPH 284 (352)
T ss_pred CHHHHHHHHHhCCCCEEecCc-cccCCHHHHHHHHHHHHHcCCcEecc
Confidence 445555554432221222222 44688888999999999999988754
No 471
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.45 E-value=29 Score=26.93 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=10.2
Q ss_pred CCCeEEEeecCCCHHHHHhhc
Q 024619 116 KTGVVVKRVNTCDLDEVASAI 136 (265)
Q Consensus 116 ~~g~~~~~~~~~d~~~l~~~~ 136 (265)
..|.++......+.++++..+
T Consensus 98 ll~~~i~~~~~~~~~e~~~~i 118 (176)
T PF06506_consen 98 LLGVDIKIYPYDSEEEIEAAI 118 (176)
T ss_dssp HHT-EEEEEEESSHHHHHHHH
T ss_pred HhCCceEEEEECCHHHHHHHH
Confidence 345555555555555554444
No 472
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=54.38 E-value=11 Score=31.55 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=24.4
Q ss_pred CccccccHHHHHHHHHHcCCEEEEeCCc
Q 024619 151 PRQQICDIRKIAEMAHAHGALLLVDNSI 178 (265)
Q Consensus 151 p~G~~~~l~~i~~~a~~~~~~li~D~~~ 178 (265)
.-|...+++++++.|+++|+.||.|-+.
T Consensus 47 ~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 47 RFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp TTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccchhhhhhhhhhccccccceEEEeeec
Confidence 3466678999999999999999999775
No 473
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=54.04 E-value=45 Score=26.45 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=27.5
Q ss_pred eEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 141 KLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 141 ~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
-+|+++--+|..|.+.|++.-.++++++|+.++.=
T Consensus 114 vvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytI 148 (191)
T cd01455 114 IVIVLSDANLERYGIQPKKLADALAREPNVNAFVI 148 (191)
T ss_pred EEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEE
Confidence 35566778777888888887889999999877553
No 474
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=53.77 E-value=1.3e+02 Score=24.95 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHhHhCCCceEEecchH--HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCe--EEEeecCCCHH
Q 024619 55 PTRDALESLLAKLDKADRALCFTSGM--AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGV--VVKRVNTCDLD 130 (265)
Q Consensus 55 ~~~~~l~~~l~~~~g~~~~i~~~~g~--~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~d~~ 130 (265)
+...++-..+.+..++..++=++++. .++.....+ .++.+|+..+.. +.+....+...+..|. ++..+.-+-.+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al-~~~g~v~tiE~~-~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAL-PEDGKILAMDIN-RENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhC-CCCCEEEEEeCC-HHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 44555556666667777766666543 555444443 334455544432 2223333344444442 22222222233
Q ss_pred HHHhhcC-----CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 024619 131 EVASAIG-----PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDNSIMSPVLSR 185 (265)
Q Consensus 131 ~l~~~~~-----~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~~~~~~~ 185 (265)
.+.+... ....+|++..- .......++.+.++.+. |.+|++|++...|.+..
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~-GGviv~DNvl~~G~v~~ 199 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKV-GGVIGYDNTLWNGSVVA 199 (247)
T ss_pred HHHHHHhccccCCcccEEEecCC--HHHhHHHHHHHHHhcCC-CeEEEEcCCCCCCcccC
Confidence 3333221 35678887654 33344456666666654 78899999987776543
No 475
>PRK04148 hypothetical protein; Provisional
Probab=53.64 E-value=84 Score=23.35 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHHHhHhCCC---ceEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCC--CHHHH
Q 024619 58 DALESLLAKLDKAD---RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTC--DLDEV 132 (265)
Q Consensus 58 ~~l~~~l~~~~g~~---~~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--d~~~l 132 (265)
+.+.+++++.+... .++.+..|+ +......+.+.|..|+..+-.-.. . ..++..+.+++.-|+- +++-.
T Consensus 2 ~~i~~~l~~~~~~~~~~kileIG~Gf-G~~vA~~L~~~G~~ViaIDi~~~a-V----~~a~~~~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 2 DTIAEFIAENYEKGKNKKIVELGIGF-YFKVAKKLKESGFDVIVIDINEKA-V----EKAKKLGLNAFVDDLFNPNLEIY 75 (134)
T ss_pred hHHHHHHHHhcccccCCEEEEEEecC-CHHHHHHHHHCCCEEEEEECCHHH-H----HHHHHhCCeEEECcCCCCCHHHH
Confidence 35667777766432 377777774 222222333556666654433221 1 3334455566555543 33222
Q ss_pred HhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEe
Q 024619 133 ASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 133 ~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D 175 (265)
.+..+|+-..| .-.+ ...|.++|++.|+-+++=
T Consensus 76 -----~~a~liysirp---p~el--~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 76 -----KNAKLIYSIRP---PRDL--QPFILELAKKINVPLIIK 108 (134)
T ss_pred -----hcCCEEEEeCC---CHHH--HHHHHHHHHHcCCCEEEE
Confidence 34566664333 2111 367999999999887764
No 476
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.59 E-value=31 Score=24.24 Aligned_cols=84 Identities=17% Similarity=0.042 Sum_probs=50.8
Q ss_pred EEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCcc
Q 024619 74 LCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPRQ 153 (265)
Q Consensus 74 i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~G 153 (265)
++++.|.-+..++..+.+.+..|++-+...... ..++..|.+++.-+..+.+.++++--++.+.+++...+.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~-----~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--- 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRDPERV-----EELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD--- 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESSHHHH-----HHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH---
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHH-----HHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH---
Confidence 566667677777777777664444433332111 233456688888899999999887556777777665521
Q ss_pred ccccHHHHHHHHHH
Q 024619 154 QICDIRKIAEMAHA 167 (265)
Q Consensus 154 ~~~~l~~i~~~a~~ 167 (265)
..--.++..+++
T Consensus 74 --~~n~~~~~~~r~ 85 (116)
T PF02254_consen 74 --EENLLIALLARE 85 (116)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 122455666676
No 477
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.41 E-value=1.7e+02 Score=26.40 Aligned_cols=87 Identities=9% Similarity=0.192 Sum_probs=53.5
Q ss_pred HHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeE---EEeecCCCHHHHHhhcC-CCceEEEEecCCC---Cc-----
Q 024619 85 AVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVV---VKRVNTCDLDEVASAIG-PWTKLVWVESPTN---PR----- 152 (265)
Q Consensus 85 ~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~d~~~l~~~~~-~~~~~i~~~~~~n---p~----- 152 (265)
+...+.+.+ +|++-...-. ...++..+++.|+. +....-.+.|++.+.+. .++.++++.+.+. +.
T Consensus 113 va~~lA~~~-~vLYVsGEES--~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~Sap 189 (456)
T COG1066 113 VAARLAKRG-KVLYVSGEES--LQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAP 189 (456)
T ss_pred HHHHHHhcC-cEEEEeCCcC--HHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCC
Confidence 444556666 5665444332 22333445666532 33333457888888876 6788888888663 33
Q ss_pred ccccc----HHHHHHHHHHcCCEEEE
Q 024619 153 QQICD----IRKIAEMAHAHGALLLV 174 (265)
Q Consensus 153 G~~~~----l~~i~~~a~~~~~~li~ 174 (265)
|.+.- -.++.++||+.|+.+++
T Consensus 190 GsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 190 GSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 54432 47899999999987655
No 478
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=53.29 E-value=36 Score=27.04 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=27.1
Q ss_pred CCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 138 PWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 138 ~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
-++.+++.+-. |..|...+.+++.++|++||+.++.
T Consensus 151 l~p~avi~eil-~~dG~~~~~~~~~~fA~~~~l~~vs 186 (194)
T PF00926_consen 151 LSPVAVICEIL-DDDGDMARRDELEEFAKKHGLPIVS 186 (194)
T ss_dssp S-SBEEEEEBB-ETTSSBHCHHHHHHHHHHTT-EEEE
T ss_pred CCCcEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 34555555544 6699999999999999999999874
No 479
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=52.07 E-value=11 Score=32.18 Aligned_cols=27 Identities=4% Similarity=0.182 Sum_probs=21.9
Q ss_pred ccHHHHHHHHH-HcCCEEEEeCCcCCCC
Q 024619 156 CDIRKIAEMAH-AHGALLLVDNSIMSPV 182 (265)
Q Consensus 156 ~~l~~i~~~a~-~~~~~li~D~~~~~~~ 182 (265)
.-+++|+++|. .++..||+||+|....
T Consensus 159 sRl~ql~~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 159 SRLDQLVDWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred chHHHHHHHHhcCCCceEEeccchhcCC
Confidence 45899999994 4789999999996443
No 480
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.03 E-value=1.3e+02 Score=27.17 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=52.3
Q ss_pred eEEecchHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEecCCCCc
Q 024619 73 ALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVESPTNPR 152 (265)
Q Consensus 73 ~i~~~~g~~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~~~np~ 152 (265)
+.++..|-.++++...+.+.|-.|.+.+-............++..|+++..-...+++.+...+ .+..+|+++ |.-|
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~-~~~d~vv~s-~gi~- 79 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWL-DQPDLVVVS-PGIP- 79 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHh-hcCCEEEEC-CCCC-
Confidence 5677778788877777778898888766443322211112234457777543333444433333 235566653 3222
Q ss_pred cccccHHHHHHHHHHcCCEEEEe
Q 024619 153 QQICDIRKIAEMAHAHGALLLVD 175 (265)
Q Consensus 153 G~~~~l~~i~~~a~~~~~~li~D 175 (265)
.+ ..+...|++.|+.++.+
T Consensus 80 ---~~-~~~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 80 ---WD-HPTLVELRERGIEVIGE 98 (459)
T ss_pred ---CC-CHHHHHHHHcCCcEEEh
Confidence 11 23455567777777665
No 481
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=51.84 E-value=1.2e+02 Score=26.93 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec----CCCHHHHHhhcCCCceEEEEecCCCCccccccH
Q 024619 83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN----TCDLDEVASAIGPWTKLVWVESPTNPRQQICDI 158 (265)
Q Consensus 83 l~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l 158 (265)
+..+..++++-..|-+++|-+..-.+.|....+..|-++..|- +.+++.+++-+..+..=-++--| |..|.+.+.
T Consensus 266 i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~-NQIGTLTEt 344 (423)
T COG0148 266 IEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKP-NQIGTLTET 344 (423)
T ss_pred HHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEECCcceecCHHHHHHHHHhccCceEEEec-hhcccHHHH
Confidence 3566777777776779999888877788888888886554442 34789999998865442222234 558999998
Q ss_pred HHHHHHHHHcCCEEEEe
Q 024619 159 RKIAEMAHAHGALLLVD 175 (265)
Q Consensus 159 ~~i~~~a~~~~~~li~D 175 (265)
-+.+++|+++|...|+=
T Consensus 345 ~~ai~~A~~~gy~~viS 361 (423)
T COG0148 345 LEAINLAKDAGYTAVIS 361 (423)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 89999999999877763
No 482
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=51.55 E-value=15 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCEEEEeCCcC
Q 024619 158 IRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 158 l~~i~~~a~~~~~~li~D~~~~ 179 (265)
-+.|.++|+++|++++.|...+
T Consensus 29 A~~I~~~A~e~~VPi~~~~~LA 50 (82)
T TIGR00789 29 AERIIEIAKKHGIPIVEDPDLV 50 (82)
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 4889999999999999997644
No 483
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=51.33 E-value=13 Score=35.17 Aligned_cols=32 Identities=19% Similarity=0.470 Sum_probs=26.2
Q ss_pred CCCCccccccHHHHHHHHHHcCCEEEEeCCcC
Q 024619 148 PTNPRQQICDIRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 148 ~~np~G~~~~l~~i~~~a~~~~~~li~D~~~~ 179 (265)
|+.+++...+++++++.|+++|+-||.|-++-
T Consensus 221 p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 221 PYDPATRIRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred CCccchHHHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 34444556789999999999999999998864
No 484
>PLN02591 tryptophan synthase
Probab=51.32 E-value=94 Score=25.80 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=56.4
Q ss_pred HHHhcCCC-CEEEEcCCCCCChHHHHHhhcCCCCeEEEeec--CCCHHHHHhhcCCCceEEEEecCCCCcccc----ccH
Q 024619 86 VTHLLGTG-EEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPWTKLVWVESPTNPRQQI----CDI 158 (265)
Q Consensus 86 ~~~~~~~g-~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~~~l~~~~~~~~~~i~~~~~~np~G~~----~~l 158 (265)
+..+.+.| |-|++++--+.... .+...++..|+.++.+- ..+.+.+++........|++-+-...||.- .++
T Consensus 99 ~~~~~~aGv~GviipDLP~ee~~-~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~ 177 (250)
T PLN02591 99 MATIKEAGVHGLVVPDLPLEETE-ALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRV 177 (250)
T ss_pred HHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhH
Confidence 34444555 77888876553332 23466788898888764 334555666655566777776666677764 347
Q ss_pred HHHHHHHHHc-CCEEEE
Q 024619 159 RKIAEMAHAH-GALLLV 174 (265)
Q Consensus 159 ~~i~~~a~~~-~~~li~ 174 (265)
+++++.+|++ ++++++
T Consensus 178 ~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 178 ESLLQELKEVTDKPVAV 194 (250)
T ss_pred HHHHHHHHhcCCCceEE
Confidence 7877777775 666765
No 485
>PRK06179 short chain dehydrogenase; Provisional
Probab=51.30 E-value=68 Score=26.29 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred ceEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC
Q 024619 72 RALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137 (265)
Q Consensus 72 ~~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~ 137 (265)
..+++++|+..+ .++..+.+.|.+|++..-.-. ......+++++.+|+.|.+++++++.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~-------~~~~~~~~~~~~~D~~d~~~~~~~~~ 65 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPA-------RAAPIPGVELLELDVTDDASVQAAVD 65 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh-------hccccCCCeeEEeecCCHHHHHHHHH
Confidence 356777776665 466777888988776443211 11123467778888888888877764
No 486
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=51.16 E-value=90 Score=28.91 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHH---HHhhcCCC-CeEEEeecCCCHHHHHhhcCCCceEEEEec-CC----C-
Q 024619 81 AALAAVTHLLGTGEEIVAGDDLYGGTDRL---LSRVTPKT-GVVVKRVNTCDLDEVASAIGPWTKLVWVES-PT----N- 150 (265)
Q Consensus 81 ~al~~~~~~~~~g~~viv~~~~~~~~~~~---~~~~~~~~-g~~~~~~~~~d~~~l~~~~~~~~~~i~~~~-~~----n- 150 (265)
....-+..+++.|-.|++-+..+...... .+..-+.. +..++.-++.+.++-+.++.....+|.+.. +. +
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~ 327 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQ 327 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCc
Confidence 45667777777774444444455443332 22222222 455555577888888888887777877632 11 1
Q ss_pred -Ccc----ccccHHHHHHHHHHcCCEEEEeCCc
Q 024619 151 -PRQ----QICDIRKIAEMAHAHGALLLVDNSI 178 (265)
Q Consensus 151 -p~G----~~~~l~~i~~~a~~~~~~li~D~~~ 178 (265)
.+| ....+..+.+++++.+++||.|+-.
T Consensus 328 ~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI 360 (505)
T PLN02274 328 EVCAVGRGQATAVYKVASIAAQHGVPVIADGGI 360 (505)
T ss_pred cccccCCCcccHHHHHHHHHHhcCCeEEEeCCC
Confidence 122 1235677888899999999999764
No 487
>PRK06182 short chain dehydrogenase; Validated
Probab=50.93 E-value=83 Score=25.87 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=41.7
Q ss_pred eEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC------CCceEEE
Q 024619 73 ALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVW 144 (265)
Q Consensus 73 ~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~------~~~~~i~ 144 (265)
.+++++|+..+ .+...+.+.|..|++..-.- ...... ...++++..+|+.|.+.+++.+. .+...++
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~----~~l~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARRV----DKMEDL-ASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH----HHHHHH-HhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 55666665555 46677778898877643221 111122 22457778888888888776654 2455555
Q ss_pred EecC
Q 024619 145 VESP 148 (265)
Q Consensus 145 ~~~~ 148 (265)
.+..
T Consensus 80 ~~ag 83 (273)
T PRK06182 80 NNAG 83 (273)
T ss_pred ECCC
Confidence 4443
No 488
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=50.72 E-value=1.2e+02 Score=28.03 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCCChHH---HHHhhcCCC-CeEEEeecCCCHHHHHhhcCCCceEEEEe-cCCC----
Q 024619 80 MAALAAVTHLLGTGEEIVAGDDLYGGTDR---LLSRVTPKT-GVVVKRVNTCDLDEVASAIGPWTKLVWVE-SPTN---- 150 (265)
Q Consensus 80 ~~al~~~~~~~~~g~~viv~~~~~~~~~~---~~~~~~~~~-g~~~~~~~~~d~~~l~~~~~~~~~~i~~~-~~~n---- 150 (265)
...+..+..+++.|-.+++-+..+..... .++..-+.. +..+.-=++.+.++.+.++.-...+|.+. .|..
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t 319 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICIT 319 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCccccc
Confidence 34455667777777555554554443322 232332222 33443335668888888887777777653 2221
Q ss_pred --Ccccc----ccHHHHHHHHHHcCCEEEEeCCcC
Q 024619 151 --PRQQI----CDIRKIAEMAHAHGALLLVDNSIM 179 (265)
Q Consensus 151 --p~G~~----~~l~~i~~~a~~~~~~li~D~~~~ 179 (265)
.+|.- ..+.++.+.|+++++.+|.|+-..
T Consensus 320 ~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~ 354 (495)
T PTZ00314 320 QEVCAVGRPQASAVYHVARYARERGVPCIADGGIK 354 (495)
T ss_pred chhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC
Confidence 11111 235678888999999999997643
No 489
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=50.57 E-value=1.5e+02 Score=26.56 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCCCEEEEcCCCCCChH-H---HHHh-hcCCCCeEEEe-ec---CCCHHHHHhhcC-CCceEEEEecCCCCccccccHHH
Q 024619 91 GTGEEIVAGDDLYGGTD-R---LLSR-VTPKTGVVVKR-VN---TCDLDEVASAIG-PWTKLVWVESPTNPRQQICDIRK 160 (265)
Q Consensus 91 ~~g~~viv~~~~~~~~~-~---~~~~-~~~~~g~~~~~-~~---~~d~~~l~~~~~-~~~~~i~~~~~~np~G~~~~l~~ 160 (265)
++||.|+++.+..+++. . .+.. +....|+++.. +. +.+.+++...++ =+++.++.. .|....+.+
T Consensus 317 ~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipv-----Hge~~~~~~ 391 (422)
T TIGR00649 317 RKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPV-----HGEYRMLIN 391 (422)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEec-----CCcHHHHHH
Confidence 37899999888888776 1 1112 34456776543 12 234555555443 145555522 355557788
Q ss_pred HHHHHHHcCC
Q 024619 161 IAEMAHAHGA 170 (265)
Q Consensus 161 i~~~a~~~~~ 170 (265)
..+++++.|+
T Consensus 392 ~~~~a~~~g~ 401 (422)
T TIGR00649 392 HTKLAEEEGY 401 (422)
T ss_pred HHHHHHHcCC
Confidence 8888887764
No 490
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=50.33 E-value=41 Score=25.14 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=48.5
Q ss_pred eEEecchHHHH--HHHHHhcCCCC-EEEEcCCC--CCChHHHHHhhcC--CCCeEEEeecCCCHHHHHhhcC------CC
Q 024619 73 ALCFTSGMAAL--AAVTHLLGTGE-EIVAGDDL--YGGTDRLLSRVTP--KTGVVVKRVNTCDLDEVASAIG------PW 139 (265)
Q Consensus 73 ~i~~~~g~~al--~~~~~~~~~g~-~viv~~~~--~~~~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~~~------~~ 139 (265)
.+++++|+.++ .+...+++.|. .|++.... ..... .+...++ ...+.+...|..+.+++++.+. .+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~-~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQ-ELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHH-HHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 35666766666 46777877765 44443332 11111 1112222 2344555566667777777664 24
Q ss_pred ceEEEEecCCCCcccccc--HHHHHHHHH
Q 024619 140 TKLVWVESPTNPRQQICD--IRKIAEMAH 166 (265)
Q Consensus 140 ~~~i~~~~~~np~G~~~~--l~~i~~~a~ 166 (265)
...++.+......+.+.+ .+++.+..+
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~ 109 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFR 109 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhhhccc
Confidence 566666655555555544 344444444
No 491
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.14 E-value=1.3e+02 Score=24.08 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=40.2
Q ss_pred eEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC------CCceEEE
Q 024619 73 ALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG------PWTKLVW 144 (265)
Q Consensus 73 ~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~------~~~~~i~ 144 (265)
.+++++|+..+ .++..+.+.|.+|++..-.-...............+.+..+|+.|.+.+++.+. .+..+|+
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi 86 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVLV 86 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 56777776555 466667777877665432111111111111111235566677778887776653 2556665
Q ss_pred EecC
Q 024619 145 VESP 148 (265)
Q Consensus 145 ~~~~ 148 (265)
-+..
T Consensus 87 ~~ag 90 (252)
T PRK06138 87 NNAG 90 (252)
T ss_pred ECCC
Confidence 5443
No 492
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=49.99 E-value=1.4e+02 Score=24.14 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred CHHHHHhhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEEeC
Q 024619 128 DLDEVASAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLVDN 176 (265)
Q Consensus 128 d~~~l~~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~D~ 176 (265)
+.+++.+.+..+..-++..-+ +..|.+.+..+++++|+++|+.+..=.
T Consensus 156 ~~~~~~~~~~~~~~d~~~~k~-~~~GGi~~~~~i~~~a~~~gi~~~~~~ 203 (229)
T cd00308 156 TVDDALEALELGAVDILQIKP-TRVGGLTESRRAADLAEAFGIRVMVHG 203 (229)
T ss_pred CHHHHHHHHHcCCCCEEecCc-cccCCHHHHHHHHHHHHHcCCEEeecC
Confidence 445554444332222222223 335777788899999999998877643
No 493
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=49.83 E-value=68 Score=24.94 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCCChHHHHHhhcCCCCeEEEeecCCC-HHHHHhhcCCCceEEEE-ecCCCCccccccHHHHHHHHHHcCCEEE
Q 024619 102 LYGGTDRLLSRVTPKTGVVVKRVNTCD-LDEVASAIGPWTKLVWV-ESPTNPRQQICDIRKIAEMAHAHGALLL 173 (265)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~d-~~~l~~~~~~~~~~i~~-~~~~np~G~~~~l~~i~~~a~~~~~~li 173 (265)
.|.++...+...++..|.++..++.++ .+...+ ...+...|++ .++.++.- +....++++.+.+.+++++
T Consensus 5 ~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~~~Pil 76 (192)
T PF00117_consen 5 NGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLE-DLDDYDGIIISGGPGSPYD-IEGLIELIREARERKIPIL 76 (192)
T ss_dssp SSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHH-HTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhh-hhcCCCEEEECCcCCcccc-ccccccccccccccceEEE
Confidence 345566666788888898888777664 333322 2345555555 55767654 5566777888888777764
No 494
>PLN02253 xanthoxin dehydrogenase
Probab=49.77 E-value=44 Score=27.64 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=38.6
Q ss_pred ceEEecchHHHH--HHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcC
Q 024619 72 RALCFTSGMAAL--AAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIG 137 (265)
Q Consensus 72 ~~i~~~~g~~al--~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~ 137 (265)
..+++++|+..+ .++..+.+.|..|++.+.................+.....+|+.|.+++.+++.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHH
Confidence 357777777666 466677888988876543321111111111111245667778888888877664
No 495
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=49.49 E-value=1.7e+02 Score=25.05 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=53.1
Q ss_pred ceEEecchH-HHHHHHHHhcCCCC--EEEE--cCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEEe
Q 024619 72 RALCFTSGM-AALAAVTHLLGTGE--EIVA--GDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWVE 146 (265)
Q Consensus 72 ~~i~~~~g~-~al~~~~~~~~~g~--~viv--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~~ 146 (265)
+.+++-+.+ .++..+....+.|. +|++ +.|.+.+ .. +...+...|+++..++-...-.+. +++..|++-
T Consensus 117 ~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G-~~-~a~~L~~~gI~vtlI~Dsa~~~~m----~~vd~VivG 190 (301)
T TIGR00511 117 DVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQG-HI-TAKELRDYGIPVTLIVDSAVRYFM----KEVDHVVVG 190 (301)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchH-HH-HHHHHHHCCCCEEEEehhHHHHHH----HhCCEEEEC
Confidence 455555544 55556665544443 4555 3344433 22 234456678888887633233332 235555542
Q ss_pred -cCCCCcccccc---HHHHHHHHHHcCCEEEEe-CCc
Q 024619 147 -SPTNPRQQICD---IRKIAEMAHAHGALLLVD-NSI 178 (265)
Q Consensus 147 -~~~np~G~~~~---l~~i~~~a~~~~~~li~D-~~~ 178 (265)
..-...|.+.. --.++-+|+.+++++++= +.|
T Consensus 191 ad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 191 ADAITANGALINKIGTSQLALAAREARVPFMVAAETY 227 (301)
T ss_pred ccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccc
Confidence 22233454432 256788899999987764 444
No 496
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.22 E-value=68 Score=26.35 Aligned_cols=90 Identities=7% Similarity=-0.031 Sum_probs=47.0
Q ss_pred HHHhcCCC-CEEEEcCCCC--CChHHHHHhhcCCCCeEEEeec--CCCHHHHHhhcCCCceEEEEecCCCCccccc--cH
Q 024619 86 VTHLLGTG-EEIVAGDDLY--GGTDRLLSRVTPKTGVVVKRVN--TCDLDEVASAIGPWTKLVWVESPTNPRQQIC--DI 158 (265)
Q Consensus 86 ~~~~~~~g-~~viv~~~~~--~~~~~~~~~~~~~~g~~~~~~~--~~d~~~l~~~~~~~~~~i~~~~~~np~G~~~--~l 158 (265)
+..+.+.| |.|++.+-.+ ......+...++..|+++...= ..+.+.++..+.....++++ +.++-+|.-. ++
T Consensus 94 i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~ 172 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGVPLPVSV 172 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCCCchHHH
Confidence 44444444 6677754211 1222233466677787766542 33567777666554455555 5555556532 34
Q ss_pred HHHHHHHHHc--CCEEEEeC
Q 024619 159 RKIAEMAHAH--GALLLVDN 176 (265)
Q Consensus 159 ~~i~~~a~~~--~~~li~D~ 176 (265)
.+.++..++. +..+++|.
T Consensus 173 ~~~i~~lr~~~~~~~i~v~g 192 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGF 192 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeC
Confidence 4444455543 35566664
No 497
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=49.06 E-value=1.6e+02 Score=24.58 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCceEEEEecCCCCc--cccccHHHHHHHHHH
Q 024619 129 LDEVASAIGPWTKLVWVESPTNPR--QQICDIRKIAEMAHA 167 (265)
Q Consensus 129 ~~~l~~~~~~~~~~i~~~~~~np~--G~~~~l~~i~~~a~~ 167 (265)
.++++.+..-+..+|++.-|.-|. ..+.+++++.+++++
T Consensus 213 ~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 213 LEKVKAAEALGINVIRIARPQTIPGVAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCCccCCCHHHHHHHHHH
Confidence 466666655667777777776443 344677777777665
No 498
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.90 E-value=1.7e+02 Score=25.64 Aligned_cols=112 Identities=15% Similarity=-0.019 Sum_probs=58.6
Q ss_pred HHHHHhHhCCCceEEec--chH---HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeec-CCC-HHHHH
Q 024619 61 ESLLAKLDKADRALCFT--SGM---AALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVN-TCD-LDEVA 133 (265)
Q Consensus 61 ~~~l~~~~g~~~~i~~~--~g~---~al~~~~~~~~~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~d-~~~l~ 133 (265)
-+.+.+.+|.+..+.+. .+. +|+..+..+ ++-+.-.+++|..+.....+..+.+..++.+-.-. ..+ +++++
T Consensus 179 i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l-~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~ 257 (368)
T cd03329 179 CLAVREAVGPDMRLMHDGAHWYSRADALRLGRAL-EELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALESRA 257 (368)
T ss_pred HHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHh-hhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHH
Confidence 34444556665444442 221 223233333 22233466777655444444344344443332111 224 67777
Q ss_pred hhcCCCceEEEEecCCCCccccccHHHHHHHHHHcCCEEEE
Q 024619 134 SAIGPWTKLVWVESPTNPRQQICDIRKIAEMAHAHGALLLV 174 (265)
Q Consensus 134 ~~~~~~~~~i~~~~~~np~G~~~~l~~i~~~a~~~~~~li~ 174 (265)
+.+..+..-++..-+ +..|.+.+..+++++|+++|+.+..
T Consensus 258 ~~i~~~a~d~v~~d~-~~~GGit~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 258 DWVLAGATDFLRADV-NLVGGITGAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HHHHhCCCCEEecCc-cccCCHHHHHHHHHHHHHcCCEEEE
Confidence 776644222222223 4468888999999999999998865
No 499
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=48.90 E-value=1.2e+02 Score=25.68 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=35.0
Q ss_pred ecCCCHHHHHhhcCC-CceEEEEecCCCCcccc-cc-----------HHHHHHHHHHcCCEEEE
Q 024619 124 VNTCDLDEVASAIGP-WTKLVWVESPTNPRQQI-CD-----------IRKIAEMAHAHGALLLV 174 (265)
Q Consensus 124 ~~~~d~~~l~~~~~~-~~~~i~~~~~~np~G~~-~~-----------l~~i~~~a~~~~~~li~ 174 (265)
+|+.|++.+.+.+++ ++.+|+=+..+.---.. .+ ...|+++|++.|+.+|.
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVh 97 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVH 97 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEE
Confidence 677788999888874 57777766554322222 11 36799999999988753
No 500
>PRK13566 anthranilate synthase; Provisional
Probab=48.67 E-value=67 Score=31.18 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCChHHHHHhhcCCCCeEEEeecCCCHHHHHhhcCCCceEEEE-ecCCCCccccccHHHHHHHHHHcCC
Q 024619 92 TGEEIVAGDDLYGGTDRLLSRVTPKTGVVVKRVNTCDLDEVASAIGPWTKLVWV-ESPTNPRQQICDIRKIAEMAHAHGA 170 (265)
Q Consensus 92 ~g~~viv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~i~~-~~~~np~G~~~~l~~i~~~a~~~~~ 170 (265)
.|.+|++-+.. .++...+..+++..|+++..++.+..+++... .++.+|++ ..|.+|. -.++.++++.+.+.++
T Consensus 525 ~g~~IlvID~~-dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~--~~~DgVVLsgGpgsp~--d~~~~~lI~~a~~~~i 599 (720)
T PRK13566 525 EGKRVLLVDHE-DSFVHTLANYFRQTGAEVTTVRYGFAEEMLDR--VNPDLVVLSPGPGRPS--DFDCKATIDAALARNL 599 (720)
T ss_pred CCCEEEEEECC-CchHHHHHHHHHHCCCEEEEEECCCChhHhhh--cCCCEEEECCCCCChh--hCCcHHHHHHHHHCCC
Confidence 36678877665 45555666888889999988886643333222 24566655 6777763 2346777888777776
Q ss_pred EE
Q 024619 171 LL 172 (265)
Q Consensus 171 ~l 172 (265)
+|
T Consensus 600 PI 601 (720)
T PRK13566 600 PI 601 (720)
T ss_pred cE
Confidence 65
Done!