Query 024620
Match_columns 265
No_of_seqs 132 out of 444
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 5.7E-95 1.2E-99 621.9 15.8 238 8-248 1-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.8E-91 4E-96 627.9 25.2 241 12-254 1-242 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 4.4E-86 9.5E-91 592.0 23.1 235 12-249 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 7.5E-83 1.6E-87 561.3 20.4 240 11-253 1-241 (247)
5 PF13424 TPR_12: Tetratricopep 95.9 0.017 3.6E-07 41.8 5.0 54 157-212 22-75 (78)
6 KOG1840 Kinesin light chain [C 92.0 15 0.00033 37.0 18.8 188 13-216 200-400 (508)
7 TIGR00990 3a0801s09 mitochondr 90.3 8.3 0.00018 38.9 14.4 52 157-210 484-535 (615)
8 PF12862 Apc5: Anaphase-promot 88.5 3.3 7.1E-05 31.5 7.8 72 139-216 2-74 (94)
9 PF13414 TPR_11: TPR repeat; P 79.7 8.7 0.00019 26.5 6.2 46 157-211 20-66 (69)
10 PF04781 DUF627: Protein of un 77.3 5.5 0.00012 32.0 5.0 41 130-170 33-74 (111)
11 PF13374 TPR_10: Tetratricopep 76.2 2.7 5.9E-05 25.9 2.4 23 157-179 19-41 (42)
12 PF07719 TPR_2: Tetratricopept 72.0 11 0.00024 22.1 4.4 28 15-43 4-31 (34)
13 PF13431 TPR_17: Tetratricopep 69.4 5.7 0.00012 24.6 2.7 33 162-203 1-33 (34)
14 PF13181 TPR_8: Tetratricopept 62.0 18 0.00038 21.3 3.8 29 14-43 3-31 (34)
15 PF06552 TOM20_plant: Plant sp 59.6 42 0.00091 29.4 7.0 82 143-231 38-122 (186)
16 PF13424 TPR_12: Tetratricopep 59.4 17 0.00038 25.6 4.1 37 178-216 1-37 (78)
17 PF00515 TPR_1: Tetratricopept 58.8 24 0.00052 20.8 4.1 28 15-43 4-31 (34)
18 PF13174 TPR_6: Tetratricopept 58.6 22 0.00047 20.5 3.8 27 14-40 2-28 (33)
19 TIGR00990 3a0801s09 mitochondr 58.5 2.1E+02 0.0045 28.8 16.9 73 157-238 525-597 (615)
20 PF13428 TPR_14: Tetratricopep 57.3 26 0.00056 22.4 4.3 29 14-43 3-31 (44)
21 TIGR02917 PEP_TPR_lipo putativ 56.9 2.2E+02 0.0047 28.6 15.0 29 14-43 467-495 (899)
22 PF01765 RRF: Ribosome recycli 54.3 51 0.0011 27.8 6.7 72 46-118 85-156 (165)
23 COG0233 Frr Ribosome recycling 53.6 48 0.001 29.1 6.4 74 45-119 104-177 (187)
24 KOG4759 Ribosome recycling fac 53.0 61 0.0013 29.9 7.2 72 45-119 182-253 (263)
25 CHL00033 ycf3 photosystem I as 52.7 1.1E+02 0.0025 24.9 8.5 68 157-233 89-162 (168)
26 PRK15359 type III secretion sy 50.8 63 0.0014 26.2 6.6 47 156-211 74-120 (144)
27 PRK14720 transcript cleavage f 47.9 66 0.0014 34.8 7.6 87 113-214 88-180 (906)
28 PF13176 TPR_7: Tetratricopept 47.0 39 0.00084 20.7 3.7 25 15-39 2-26 (36)
29 PF14559 TPR_19: Tetratricopep 46.7 88 0.0019 21.1 5.9 44 157-209 8-51 (68)
30 KOG4162 Predicted calmodulin-b 46.4 4E+02 0.0086 28.5 14.9 130 101-245 410-580 (799)
31 PRK12794 flaF flagellar biosyn 45.9 30 0.00065 28.2 3.8 58 188-245 3-61 (122)
32 PRK09782 bacteriophage N4 rece 45.4 4.5E+02 0.0097 28.8 15.0 25 15-39 512-536 (987)
33 cd00520 RRF Ribosome recycling 44.5 74 0.0016 27.4 6.2 72 46-118 99-170 (179)
34 TIGR00496 frr ribosome recycli 43.2 88 0.0019 27.0 6.5 73 46-119 94-166 (176)
35 PRK15363 pathogenicity island 42.7 1.3E+02 0.0028 25.7 7.2 70 155-237 84-155 (157)
36 CHL00033 ycf3 photosystem I as 42.2 92 0.002 25.5 6.4 49 157-211 52-100 (168)
37 PF13371 TPR_9: Tetratricopept 42.0 59 0.0013 22.3 4.5 45 157-210 12-56 (73)
38 PRK00083 frr ribosome recyclin 41.7 96 0.0021 26.9 6.5 72 46-118 103-174 (185)
39 COG3947 Response regulator con 39.9 48 0.001 31.5 4.5 45 195-244 291-335 (361)
40 PRK10049 pgaA outer membrane p 39.2 4.7E+02 0.01 27.3 14.2 16 196-211 285-300 (765)
41 PRK12793 flaF flagellar biosyn 37.6 41 0.00089 27.1 3.3 52 192-244 6-58 (115)
42 smart00028 TPR Tetratricopepti 37.2 64 0.0014 16.7 3.8 28 15-43 4-31 (34)
43 COG4499 Predicted membrane pro 37.1 66 0.0014 31.5 5.1 47 182-228 231-282 (434)
44 PF08424 NRDE-2: NRDE-2, neces 35.8 2.4E+02 0.0051 26.3 8.7 85 156-247 118-212 (321)
45 PF03755 YicC_N: YicC-like fam 35.4 77 0.0017 26.5 4.8 62 158-219 82-147 (159)
46 TIGR02795 tol_pal_ybgF tol-pal 35.1 1.4E+02 0.003 21.9 5.9 50 157-212 56-105 (119)
47 PRK02603 photosystem I assembl 33.8 1.6E+02 0.0035 24.2 6.6 49 157-211 52-100 (172)
48 PF13414 TPR_11: TPR repeat; P 33.2 1.5E+02 0.0033 19.9 7.2 45 13-61 4-48 (69)
49 PF12895 Apc3: Anaphase-promot 31.8 71 0.0015 22.9 3.6 43 163-208 41-83 (84)
50 TIGR02521 type_IV_pilW type IV 30.7 2.8E+02 0.0062 22.2 16.6 58 13-75 32-89 (234)
51 PRK11788 tetratricopeptide rep 30.3 4.3E+02 0.0092 24.1 15.1 23 17-39 74-96 (389)
52 PF13432 TPR_16: Tetratricopep 29.8 1.7E+02 0.0038 19.5 6.7 53 17-74 2-54 (65)
53 TIGR02917 PEP_TPR_lipo putativ 29.1 5.9E+02 0.013 25.4 16.3 27 13-39 602-628 (899)
54 KOG1107 Membrane coat complex 29.1 1.3E+02 0.0029 31.5 6.0 42 156-197 656-698 (760)
55 KOG1840 Kinesin light chain [C 28.6 6.3E+02 0.014 25.6 19.0 191 13-222 284-489 (508)
56 PF05010 TACC: Transforming ac 28.1 4.3E+02 0.0093 23.5 9.4 83 17-116 123-206 (207)
57 KOG2002 TPR-containing nuclear 28.1 1.2E+02 0.0027 32.9 5.8 51 161-215 250-302 (1018)
58 PF10516 SHNi-TPR: SHNi-TPR; 27.8 70 0.0015 20.6 2.6 37 138-177 2-38 (38)
59 KOG3771 Amphiphysin [Intracell 27.5 5E+02 0.011 26.0 9.5 172 13-195 15-213 (460)
60 PF12569 NARP1: NMDA receptor- 27.5 6.5E+02 0.014 25.4 18.3 61 150-211 156-222 (517)
61 cd07640 BAR_ASAP3 The Bin/Amph 27.1 2E+02 0.0043 25.8 6.0 36 160-195 39-75 (213)
62 PF12688 TPR_5: Tetratrico pep 27.0 3E+02 0.0064 22.0 6.7 50 157-212 18-67 (120)
63 PLN03088 SGT1, suppressor of 26.6 1.9E+02 0.0041 27.3 6.4 46 157-211 19-64 (356)
64 PF14559 TPR_19: Tetratricopep 25.4 1.2E+02 0.0026 20.4 3.7 51 25-80 4-54 (68)
65 PF03635 Vps35: Vacuolar prote 23.2 86 0.0019 33.2 3.7 40 156-195 701-741 (762)
66 PF13371 TPR_9: Tetratricopept 22.7 1.5E+02 0.0033 20.2 3.9 30 13-43 30-59 (73)
67 KOG0553 TPR repeat-containing 22.6 2.3E+02 0.0051 26.7 6.0 43 158-209 99-141 (304)
68 PF08899 DUF1844: Domain of un 22.4 3.2E+02 0.007 20.3 5.6 30 27-61 39-68 (74)
69 PRK11447 cellulose synthase su 22.2 1.1E+03 0.023 26.0 16.3 29 14-43 114-142 (1157)
70 PF07309 FlaF: Flagellar prote 21.9 1E+02 0.0022 24.6 3.1 48 196-244 10-57 (113)
71 PF10083 DUF2321: Uncharacteri 21.9 1.3E+02 0.0028 25.7 3.8 34 30-66 83-116 (158)
72 PHA02103 hypothetical protein 21.9 27 0.00058 28.1 -0.3 15 136-150 78-92 (135)
73 KOG1156 N-terminal acetyltrans 20.6 8.8E+02 0.019 25.6 10.0 164 48-243 3-197 (700)
74 COG4105 ComL DNA uptake lipopr 20.5 3.3E+02 0.0072 25.0 6.4 69 163-240 87-167 (254)
75 KOG4234 TPR repeat-containing 20.5 6.2E+02 0.014 23.1 7.9 29 14-43 170-198 (271)
76 PF08717 nsp8: nsp8 replicase; 20.4 1.2E+02 0.0025 26.8 3.3 38 156-213 15-52 (199)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-95 Score=621.89 Aligned_cols=238 Identities=75% Similarity=1.127 Sum_probs=233.1
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcc
Q 024620 8 TPSPREENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE 87 (265)
Q Consensus 8 m~~~re~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~ 87 (265)
|+..|++.+|+|||++||+||++|++.||.++ ..+ .+|+.+|||||||||||+||+||+|||++++++||++.+||.
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~va-s~~--~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~ 77 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVA-SSG--QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNT 77 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc--chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCCh
Confidence 67779999999999999999999999999999 788 999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhHHHHhhhccCCCCCCCchhhHHhhhhccccchhhhhcCchhHHHHHHHHHHHHHHHH
Q 024620 88 DHVSTIRDYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQ 167 (265)
Q Consensus 88 ~~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~ 167 (265)
.++.+|++||++|++||..||++|+.+|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.
T Consensus 78 ~qv~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~As 157 (268)
T COG5040 78 HQVELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAAS 157 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhcCCC
Q 024620 168 DIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQ 247 (265)
Q Consensus 168 ~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~ 247 (265)
++|...||||||||||||||||||||||++++++||.+||+|||+||++||+|+|++|+|||+||||||||||+||++.+
T Consensus 158 eiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 158 EIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred HHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999755
Q ss_pred C
Q 024620 248 D 248 (265)
Q Consensus 248 ~ 248 (265)
+
T Consensus 238 ~ 238 (268)
T COG5040 238 Y 238 (268)
T ss_pred c
Confidence 3
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.8e-91 Score=627.94 Aligned_cols=241 Identities=91% Similarity=1.300 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhh
Q 024620 12 REENVYMAKLAEQAERYEEMVEFMEKVSASV-ESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 90 (265)
Q Consensus 12 re~li~~Aklaeq~eRy~Dm~~~mk~~i~~~-~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~ 90 (265)
|++++|+|||++|||||+||+.+||+++ ++ +. .+||.||||||||||||+||++|+|||+|+++++++..+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~-~~~~~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVA-KTVDS-EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHH-hhcCC-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 6899999999999999999999999999 66 40 499999999999999999999999999999999998877888888
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhhccCCCCCCCchhhHHhhhhccccchhhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 024620 91 STIRDYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIA 170 (265)
Q Consensus 91 ~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~la 170 (265)
+.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhcCCCCCC
Q 024620 171 NAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDG 250 (265)
Q Consensus 171 ~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~~~ 250 (265)
+.+||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+|+|||||||||++|+++.++++
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999977776
Q ss_pred hhhh
Q 024620 251 ADEI 254 (265)
Q Consensus 251 ~~~~ 254 (265)
+.++
T Consensus 239 ~~~~ 242 (244)
T smart00101 239 ADEI 242 (244)
T ss_pred hhhh
Confidence 6553
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=4.4e-86 Score=591.97 Aligned_cols=235 Identities=69% Similarity=1.089 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhH
Q 024620 12 REENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVS 91 (265)
Q Consensus 12 re~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~ 91 (265)
|++++|||||++|||||+||+++||+++ +++ ++||.|||||||+||||+||++|+|||+|++++++++.+|++.+++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~-~~~--~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLI-EMN--PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH-HTS--S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHH-ccC--CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 8999999999999999999999999999 888 9999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHhhhccCCCCCCCchhhHHhhhhccccchhhhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 024620 92 TIRDYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIAN 171 (265)
Q Consensus 92 ~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~la~ 171 (265)
.+++||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhcCCCCC
Q 024620 172 AELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDD 249 (265)
Q Consensus 172 ~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~~ 249 (265)
.+||||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-83 Score=561.27 Aligned_cols=240 Identities=78% Similarity=1.149 Sum_probs=233.2
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhh
Q 024620 11 PREENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 90 (265)
Q Consensus 11 ~re~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~ 90 (265)
+|+++|++|||++|++||+||+.+||.++ +.+ .+||.+|||||||+|||+||+||++||+|++||||++.+|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~-~~~--~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVA-ELD--VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhc-ccc--hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 48899999999999999999999999999 778 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhhccCCCCCC-CchhhHHhhhhccccchhhhhcCchhHHHHHHHHHHHHHHHHHH
Q 024620 91 STIRDYRSKIETELSSICDGILKLLDSRLIPCASS-GDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDI 169 (265)
Q Consensus 91 ~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~l 169 (265)
..|..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||++||..|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhcCCCCC
Q 024620 170 ANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDD 249 (265)
Q Consensus 170 a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~~ 249 (265)
++..|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||||+|+++.+++
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred Chhh
Q 024620 250 GADE 253 (265)
Q Consensus 250 ~~~~ 253 (265)
+...
T Consensus 238 ~~~~ 241 (247)
T KOG0841|consen 238 EKEA 241 (247)
T ss_pred cccc
Confidence 5544
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.93 E-value=0.017 Score=41.82 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 212 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 212 (265)
+.|...|++|+++ .+.+++.||...-...|.+..++. +|+.++|+...++|++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 5799999999999 557899888878888888888777 79999999999988763
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.95 E-value=15 Score=36.96 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--CC--CCCCCH-HHHHHHHHHHhhhhhhhhHHHHHHHH-HhhhhhhcCc
Q 024620 13 EENVYMAKLAEQAERYEEMVEFMEKVSASV--ES--SEELTV-EERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN 86 (265)
Q Consensus 13 e~li~~Aklaeq~eRy~Dm~~~mk~~i~~~--~~--~~eLt~-eERnLlSvayKn~i~~~R~s~R~l~~-~eqk~~~~~~ 86 (265)
..+.++|....+.|+|+..+.-.|+.+ +. +. ...+-. .-.+-|.+.|-++ +..+.|..++.. +...+...|.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al-~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQAL-RILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCC
Confidence 345568888888899999999998887 43 00 012222 2334466665543 456677777642 4444444443
Q ss_pred --chhhHHHH-----HHHHHHHHHHHHHhHhHHHHhhhccCCCCCCCchhhHHhhhhccccchhhhhcCchhHHHHHHHH
Q 024620 87 --EDHVSTIR-----DYRSKIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST 159 (265)
Q Consensus 87 --~~~~~~i~-----~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~A 159 (265)
+.....+. -++.-=-.|-...|+.+++|..+. +.+..++..-- +.++..-.....-.+.|
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQ-----------LSELAAILQSMNEYEEA 344 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHH-----------HHHHHHHHHHhcchhHH
Confidence 22222222 234444567889999999999883 33333332221 23332222222235789
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024620 160 LTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE 216 (265)
Q Consensus 160 ~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 216 (265)
...|+.|+.+....+.+.||.-=|+--|+++-||- +|..++|.++.++|+...-+.
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 99999999999888999999999999999999886 799999999999998877554
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.29 E-value=8.3 Score=38.85 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 210 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 210 (265)
+.|...|++|+.+... ..+.++..++ .++.+..+|+-.|+.++|..+..+|+
T Consensus 484 ~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 484 DEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5677888888766432 3333332222 34545555665677777777766654
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.49 E-value=3.3 Score=31.51 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=51.9
Q ss_pred ccchhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024620 139 YHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLA-LNFSVFYYEILNSPDRACNLAKQAFDEAIAE 216 (265)
Q Consensus 139 yyRYlaE~~~~~~~~~~~~~A~~aY~~A~~la~~~L~pt~pirLgLa-LN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 216 (265)
|.+|+--+..++- ..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 2 ~l~~~~~~~~~dy-----~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 2 YLRYLNALRSGDY-----SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555542 45788888888988777776655555554 788887776 699999999888888888664
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.73 E-value=8.7 Score=26.48 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILN-SPDRACNLAKQAFD 211 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~-~~~~A~~iAk~afd 211 (265)
+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 5789999999975 34445577888887776 57 78999988887764
No 10
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.34 E-value=5.5 Score=32.04 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=33.5
Q ss_pred hHHhhhhccccchhhhhcCc-hhHHHHHHHHHHHHHHHHHHH
Q 024620 130 VFYLKMKGDYHRYLAEFKTG-AERKEAAESTLTAYKAAQDIA 170 (265)
Q Consensus 130 Vfy~KmkgDyyRYlaE~~~~-~~~~~~~~~A~~aY~~A~~la 170 (265)
.|.+...|+.|..+|....+ +-+..+.-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 48889999999999988654 556778889999999998643
No 11
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.15 E-value=2.7 Score=25.89 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc
Q 024620 157 ESTLTAYKAAQDIANAELAPTHP 179 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~p 179 (265)
+.|...|++|+.+.+.-++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57999999999999988899998
No 12
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.99 E-value=11 Score=22.12 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 15 NVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 15 li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
+..++.+..+.|+|++.++++++.+ .++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al-~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL-ELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-HHC
Confidence 5678999999999999999999998 665
No 13
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.44 E-value=5.7 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHH
Q 024620 162 AYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRAC 203 (265)
Q Consensus 162 aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~ 203 (265)
+|++|++ +.|.|| ....|++++|+. .|+.++|+
T Consensus 1 ~y~kAie-----~~P~n~---~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIE-----LNPNNA---EAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred ChHHHHH-----HCCCCH---HHHHHHHHHHHH-CcCHHhhc
Confidence 4677765 445554 456788888886 69999886
No 14
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.04 E-value=18 Score=21.34 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 14 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
-+..++++..+.|.|+.++.++++.+ +++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~-~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL-ELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-hhC
Confidence 35678999999999999999999998 665
No 15
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.60 E-value=42 Score=29.43 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=49.1
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCc---chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcc
Q 024620 143 LAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHP---IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDT 219 (265)
Q Consensus 143 laE~~~~~~~~~~~~~A~~aY~~A~~la~~~L~pt~p---irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~ 219 (265)
++.|..+.+.++.++.|..-|++|+.+ .|..+ .-||.|+--=-|+..-..+.+.=.+.|...|+.|... +
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I-----~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~ 110 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKI-----NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--D 110 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--C
Confidence 677888888888999999999999875 23322 4466665554453332223333355677778888774 3
Q ss_pred cCccchHHHHHH
Q 024620 220 LGEESYKDSTLI 231 (265)
Q Consensus 220 l~ee~y~ds~~I 231 (265)
-+.+.|+.+..+
T Consensus 111 P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 111 PNNELYRKSLEM 122 (186)
T ss_dssp TT-HHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 345668776544
No 16
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=59.41 E-value=17 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=29.7
Q ss_pred CcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 024620 178 HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE 216 (265)
Q Consensus 178 ~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ 216 (265)
||.......|.+..|++ +|+.++|+...++|++- ...
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~ 37 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQ 37 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHH
Confidence 78888888999988886 79999999999888887 444
No 17
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=58.82 E-value=24 Score=20.82 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 15 NVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 15 li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
+..++.+..+.|+|++.+.+.++.+ +++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al-~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL-ELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH-HHC
Confidence 4567888899999999999999999 766
No 18
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=58.61 E-value=22 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 024620 14 ENVYMAKLAEQAERYEEMVEFMEKVSA 40 (265)
Q Consensus 14 ~li~~Aklaeq~eRy~Dm~~~mk~~i~ 40 (265)
-+..+|.+..+.|++++++..+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999983
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=58.50 E-value=2.1e+02 Score=28.83 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLR 236 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLr 236 (265)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-..-+-+.--+|.+++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777664 4555553 22333444444 79999999987777665543222122234666666644554
Q ss_pred hh
Q 024620 237 DN 238 (265)
Q Consensus 237 DN 238 (265)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 20
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=57.27 E-value=26 Score=22.42 Aligned_cols=29 Identities=7% Similarity=0.168 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 14 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
-+..+|+...+.|++++.+..+++++ ...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l-~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL-ALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HHC
Confidence 35678999999999999999999999 654
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=56.88 E-value=2.2e+02 Score=28.56 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 14 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
-+..++.+..+.|+|++++.++.+++ ..+
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~ 495 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKAL-SIE 495 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-hhC
Confidence 45566777777777777777777766 443
No 22
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=54.29 E-value=51 Score=27.83 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhc
Q 024620 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSR 118 (265)
Q Consensus 46 ~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~ 118 (265)
|.+|.|-|.-+....|...-..|.+.|-+..--.+.-.+ .......-++-..+++++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999986432222110 000001334555667777777777777777654
No 23
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=53.63 E-value=48 Score=29.08 Aligned_cols=74 Identities=23% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhcc
Q 024620 45 SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (265)
Q Consensus 45 ~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 119 (265)
.|+||.|-|.=|..-.|.+.-..|-|.|-+.-=- +...+...+....-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999888888888885211 1111111111123356667788888888888888888754
No 24
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=52.96 E-value=61 Score=29.90 Aligned_cols=72 Identities=25% Similarity=0.270 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhcc
Q 024620 45 SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (265)
Q Consensus 45 ~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 119 (265)
+|+.|.|-|.=|+...+.+...+|.|+|-+..=--+...+... ..-.+--.+++.||..+.++.++.+|..|
T Consensus 182 iP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 182 IPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999886422222221111 02245567888999999988888888764
No 25
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=52.72 E-value=1.1e+02 Score=24.88 Aligned_cols=68 Identities=16% Similarity=0.055 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYY------EILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTL 230 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~y------Ei~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~ 230 (265)
+.|..+|++|+.+ .|.+ .+.-.|.++.++ ..+|+.+.|.....+|+.-- ...-.++.+++.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW-KQAIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH-HHHHHhCcccHHHHHH
Confidence 4688889988864 3333 233345555555 24788888877766665321 2222245555666555
Q ss_pred HHH
Q 024620 231 IMQ 233 (265)
Q Consensus 231 Ilq 233 (265)
-|.
T Consensus 160 ~~~ 162 (168)
T CHL00033 160 WLK 162 (168)
T ss_pred HHH
Confidence 443
No 26
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.84 E-value=63 Score=26.16 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024620 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 211 (265)
Q Consensus 156 ~~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 211 (265)
.+.|..+|+.|+. +.|.||- ...|.++-+. -+|++++|+.....|..
T Consensus 74 ~~~A~~~y~~Al~-----l~p~~~~---a~~~lg~~l~-~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALM-----LDASHPE---PVYQTGVCLK-MMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHh-----cCCCCcH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 3568899999885 4555652 1222222222 37999998876665544
No 27
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=47.90 E-value=66 Score=34.76 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHhhhccCCCCCCCchhhHHhhhhccccch------hhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHhh
Q 024620 113 KLLDSRLIPCASSGDSKVFYLKMKGDYHRY------LAEFKTGAERKEAAESTLTAYKAAQDIANAELAPTHPIRLGLAL 186 (265)
Q Consensus 113 ~lId~~Lip~~~~~eskVfy~KmkgDyyRY------laE~~~~~~~~~~~~~A~~aY~~A~~la~~~L~pt~pirLgLaL 186 (265)
+++|. .|.........||++..|||+.- +|++-. +-.-.++|..+|+++++ +.|.||. +|
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~-----~D~~n~~----aL 153 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVK-----ADRDNPE----IV 153 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHh-----cCcccHH----HH
Confidence 55543 34444446667888888887653 233321 11123578889998886 4477874 55
Q ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 024620 187 NFSVFYYEILNSPDRACNLAKQAFDEAI 214 (265)
Q Consensus 187 N~SVF~yEi~~~~~~A~~iAk~afd~Ai 214 (265)
|+=-|+|.-. +.++|..++++|+.--+
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 6555555555 99999999999977644
No 28
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=46.96 E-value=39 Score=20.73 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 024620 15 NVYMAKLAEQAERYEEMVEFMEKVS 39 (265)
Q Consensus 15 li~~Aklaeq~eRy~Dm~~~mk~~i 39 (265)
+..+|.+..+.|.|+.++++.++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999855
No 29
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=46.67 E-value=88 Score=21.07 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 209 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 209 (265)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..+.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4577777777643 44455555667777776 59988888776553
No 30
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=46.39 E-value=4e+02 Score=28.48 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=77.8
Q ss_pred HHHHHHHhHhHHHHhhhccCCCCCCCchhhHHhhhhccccchhhhhc-CchhHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 024620 101 ETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFK-TGAERKEAAESTLTAYKAAQDIANAELAPTHP 179 (265)
Q Consensus 101 e~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~-~~~~~~~~~~~A~~aY~~A~~la~~~L~pt~p 179 (265)
-+|..++...++++... ....-+---+++-|=-|-..|-.. ..++|...-.++.++|++|.+ +.|+||
T Consensus 410 ~eegldYA~kai~~~~~------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp 478 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGG------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP 478 (799)
T ss_pred hhhHHHHHHHHHHHhhh------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc
Confidence 34566666666553311 111122223456676666666554 456788888999999999975 678999
Q ss_pred chHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH------------------------HHHhhc----ccC----------
Q 024620 180 IRLGLALNFSVFYYEILNSPDRACNLAKQAFDE------------------------AIAELD----TLG---------- 221 (265)
Q Consensus 180 irLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~------------------------Ai~~ld----~l~---------- 221 (265)
-...+.|++|-+ .++.+.|.+.++.++.- |+.-+| +-.
T Consensus 479 ---~~if~lalq~A~-~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 479 ---LVIFYLALQYAE-QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred ---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 234455666554 56777777766665443 222221 111
Q ss_pred --ccchHHHHHHHHHHHhhHhhhhcC
Q 024620 222 --EESYKDSTLIMQLLRDNLTLWTSD 245 (265)
Q Consensus 222 --ee~y~ds~~IlqLLrDNL~lW~~e 245 (265)
+-.+.|....+.+.+.-|.+|..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 123677777888888889999843
No 31
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=45.93 E-value=30 Score=28.17 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHH-HHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhcC
Q 024620 188 FSVF-YYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD 245 (265)
Q Consensus 188 ~SVF-~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e 245 (265)
+|.+ |-++......+.++=..+|..+...|....+..-.+....++-|..|..+|+--
T Consensus 3 ~a~~AY~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~ 61 (122)
T PRK12794 3 MAAQAYARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIF 61 (122)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3444 444555566666777778888888877665543333367779999999999953
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=45.38 E-value=4.5e+02 Score=28.82 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 024620 15 NVYMAKLAEQAERYEEMVEFMEKVS 39 (265)
Q Consensus 15 li~~Aklaeq~eRy~Dm~~~mk~~i 39 (265)
.+.+|.+..+.|+|++.+.+.++++
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4455666666677777777766655
No 33
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=44.51 E-value=74 Score=27.39 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhc
Q 024620 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSR 118 (265)
Q Consensus 46 ~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~ 118 (265)
|+||.|-|.=|....|...-..|.+.|-+..--.+.- ++.......-++-.++.++++..+.++.+.-||..
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~ 170 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDEL 170 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998888888888888888888752111110 00000001123444566777777777766666654
No 34
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=43.24 E-value=88 Score=26.95 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhcc
Q 024620 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRL 119 (265)
Q Consensus 46 ~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 119 (265)
|+||.|-|.=|....|...-..|.++|-+..--.+.- +.......+-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998888888888888888742111100 000000012244556677777777777777666543
No 35
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=42.68 E-value=1.3e+02 Score=25.66 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccc--hHHHHHHH
Q 024620 155 AAESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEES--YKDSTLIM 232 (265)
Q Consensus 155 ~~~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~--y~ds~~Il 232 (265)
--+.|..+|..|.. |.|.||- ...|.++-+. .+|+.+.|. ++|+.||.--...++.. ...+...+
T Consensus 84 ~~~~AI~aY~~A~~-----L~~ddp~---~~~~ag~c~L-~lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 84 HWGEAIYAYGRAAQ-----IKIDAPQ---APWAAAECYL-ACDNVCYAI----KALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred hHHHHHHHHHHHHh-----cCCCCch---HHHHHHHHHH-HcCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 34678888888875 4555653 1344555444 368877664 57888887654443322 23366666
Q ss_pred HHHHh
Q 024620 233 QLLRD 237 (265)
Q Consensus 233 qLLrD 237 (265)
..|.|
T Consensus 151 ~~l~~ 155 (157)
T PRK15363 151 QQLSD 155 (157)
T ss_pred HHhhc
Confidence 66655
No 36
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=42.22 E-value=92 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 211 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 211 (265)
+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+....+|+.
T Consensus 52 ~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 52 AEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 46888899998763 2333333455666655554 7999999998887774
No 37
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=41.98 E-value=59 Score=22.32 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 210 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~af 210 (265)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|.....++.
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 3455555555542 55556667778888776 699988888766665
No 38
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=41.71 E-value=96 Score=26.94 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhc
Q 024620 46 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSR 118 (265)
Q Consensus 46 ~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~ 118 (265)
|+||.|-|.=|....|...-.-|.+.|-+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~ 174 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDEL 174 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999888888888888888875321111000 000001124444566777777777777666654
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.85 E-value=48 Score=31.52 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=39.2
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhc
Q 024620 195 ILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 244 (265)
Q Consensus 195 i~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~ 244 (265)
-.|.+..|+++.+.+.. +|.|+|++++.-+.++-+++||+..=++
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 37999999999998754 7889999999999999999999986554
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=39.24 E-value=4.7e+02 Score=27.33 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=11.3
Q ss_pred hCChHHHHHHHHHHHH
Q 024620 196 LNSPDRACNLAKQAFD 211 (265)
Q Consensus 196 ~~~~~~A~~iAk~afd 211 (265)
.|++++|...-++++.
T Consensus 285 ~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 285 LHQPEKAQSILTELFY 300 (765)
T ss_pred cCCcHHHHHHHHHHhh
Confidence 6788888777666654
No 41
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=37.64 E-value=41 Score=27.15 Aligned_cols=52 Identities=27% Similarity=0.342 Sum_probs=41.9
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhc
Q 024620 192 YYEILNSPD-RACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 244 (265)
Q Consensus 192 ~yEi~~~~~-~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~ 244 (265)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|..|-.+|+-
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888999999998887766544 777888999999999995
No 42
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=37.23 E-value=64 Score=16.74 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 15 NVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 15 li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
+..++.+..+.++|++.+.++.+.+ ...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~-~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL-ELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-ccC
Confidence 4567888888999999999999888 543
No 43
>COG4499 Predicted membrane protein [Function unknown]
Probab=37.13 E-value=66 Score=31.47 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=39.5
Q ss_pred HHHhhhHHHHHHHHhCChHHHHHHHHHHH-----HHHHHhhcccCccchHHH
Q 024620 182 LGLALNFSVFYYEILNSPDRACNLAKQAF-----DEAIAELDTLGEESYKDS 228 (265)
Q Consensus 182 LgLaLN~SVF~yEi~~~~~~A~~iAk~af-----d~Ai~~ld~l~ee~y~ds 228 (265)
|-|++=|++|+|-+....+.||.-|.+|| ++.|..|+.+|.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 44578899999999999999999999995 789999998887765443
No 44
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.83 E-value=2.4e+02 Score=26.27 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhcC----------CCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccch
Q 024620 156 AESTLTAYKAAQDIANAEL----------APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESY 225 (265)
Q Consensus 156 ~~~A~~aY~~A~~la~~~L----------~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y 225 (265)
+....+.|.+++....... +.+.-..|-+.+++++|..+ .|.++.|+.+.+..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 3456677777776554322 23356888999999999998 699999999999888776543333332221
Q ss_pred HHHHHHHHHHHhhHhhhhcCCC
Q 024620 226 KDSTLIMQLLRDNLTLWTSDMQ 247 (265)
Q Consensus 226 ~ds~~IlqLLrDNL~lW~~e~~ 247 (265)
. +.++.=-.=|.++.+
T Consensus 197 ~------~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVP 212 (321)
T ss_pred H------HHHHHHHHHhCcCCC
Confidence 1 444444578988755
No 45
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=35.38 E-value=77 Score=26.52 Aligned_cols=62 Identities=26% Similarity=0.235 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHhhhH-HHHH-HHH--hCChHHHHHHHHHHHHHHHHhhcc
Q 024620 158 STLTAYKAAQDIANAELAPTHPIRLGLALNF-SVFY-YEI--LNSPDRACNLAKQAFDEAIAELDT 219 (265)
Q Consensus 158 ~A~~aY~~A~~la~~~L~pt~pirLgLaLN~-SVF~-yEi--~~~~~~A~~iAk~afd~Ai~~ld~ 219 (265)
....+|-+++.-....++...|+.++..|.+ .||. .+- ....+..-.....++++|+..+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677776655567888889999999998 4665 221 112223457788999999888764
No 46
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=35.09 E-value=1.4e+02 Score=21.85 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 212 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 212 (265)
+.|.+.|+.++. +.|.||......++.+..++. +|+.++|.....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457777777764 346676555555566555554 79999998877766655
No 47
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=33.81 E-value=1.6e+02 Score=24.18 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 211 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 211 (265)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+....+|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 468888998887542 223223345666666655 7999999888777765
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=33.20 E-value=1.5e+02 Score=19.92 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q 024620 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYK 61 (265)
Q Consensus 13 e~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayK 61 (265)
+.+..++.++-+.|+|++++.++++.+ +.+ |. +..=..-++.+|.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~--p~-~~~~~~~~g~~~~ 48 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAI-ELD--PN-NAEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHH-HHS--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC--CC-CHHHHHHHHHHHH
Confidence 356678999999999999999999999 765 43 2333334444443
No 49
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=31.83 E-value=71 Score=22.94 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHH
Q 024620 163 YKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 208 (265)
Q Consensus 163 Y~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~ 208 (265)
|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhc
Confidence 4444444432 22333333333333333333 6777777665443
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=30.67 E-value=2.8e+02 Score=22.23 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 024620 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIIS 75 (265)
Q Consensus 13 e~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~ 75 (265)
.-+..++...-..|+|+.++..+.+++ ... |. +..-...+...|-.. +....+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l-~~~--p~-~~~~~~~la~~~~~~-~~~~~A~~~~~ 89 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKAL-EHD--PD-DYLAYLALALYYQQL-GELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC--cc-cHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 345677888888999999999999988 543 33 344445555554433 33444444443
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=30.33 E-value=4.3e+02 Score=24.15 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 024620 17 YMAKLAEQAERYEEMVEFMEKVS 39 (265)
Q Consensus 17 ~~Aklaeq~eRy~Dm~~~mk~~i 39 (265)
.++.+.-+.|+|++++.....++
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHh
Confidence 34444444444444444444444
No 52
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=29.80 E-value=1.7e+02 Score=19.48 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 024620 17 YMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRII 74 (265)
Q Consensus 17 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l 74 (265)
.+|...-+.|+|++++..+++++ ... | -+.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l-~~~--P-~~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQAL-KQD--P-DNPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHH-CCS--T-THHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHH-HHC--C-CCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 46788888999999999999998 543 3 35555555555554 334444444433
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=29.14 E-value=5.9e+02 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 024620 13 EENVYMAKLAEQAERYEEMVEFMEKVS 39 (265)
Q Consensus 13 e~li~~Aklaeq~eRy~Dm~~~mk~~i 39 (265)
+-...++.+..+.|+|++++.++++++
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556666666677777777766666
No 54
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.14 E-value=1.3e+02 Score=31.51 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHH-hhhHHHHHHHHhC
Q 024620 156 AESTLTAYKAAQDIANAELAPTHPIRLGL-ALNFSVFYYEILN 197 (265)
Q Consensus 156 ~~~A~~aY~~A~~la~~~L~pt~pirLgL-aLN~SVF~yEi~~ 197 (265)
-++..+|+++|+.+|.+.+.|+-++-|=+ +||--.||||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 35688999999999999999999987744 8998888888533
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=28.57 E-value=6.3e+02 Score=25.55 Aligned_cols=191 Identities=16% Similarity=0.127 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC--CCCCCCHHHHHHHHHH---------HhhhhhhhhHHHHHHHHHhhhh
Q 024620 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVE--SSEELTVEERNLLSVA---------YKNVIGARRASWRIISSIEQKE 81 (265)
Q Consensus 13 e~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~--~~~eLt~eERnLlSva---------yKn~i~~~R~s~R~l~~~eqk~ 81 (265)
.-+.-+|.+....|+|++.-.+++..+ ++- .......+=-..|+.. |-..+.=.+.+.+++. ...
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al-~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~ 359 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERAL-EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAP 359 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHH-HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhc
Confidence 345678888888999999999999887 431 0012333322222221 2333333344444432 221
Q ss_pred hhcC-c--chhhHHHHHHHH-HHHHHHHHHhHhHHHHhhhccCCCCCCCchhhHHhhhhccccchhhhhcCchhHHHHHH
Q 024620 82 ESRG-N--EDHVSTIRDYRS-KIETELSSICDGILKLLDSRLIPCASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAE 157 (265)
Q Consensus 82 ~~~~-~--~~~~~~i~~yr~-kie~EL~~~C~eii~lId~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~ 157 (265)
.... + ..+.++-.-|.. -=.+|-..+-..+|++.....= ......-.+++.|-.+|+|=. -..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--~~~~~~~~~l~~la~~~~~~k-----------~~~ 426 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--KKDYGVGKPLNQLAEAYEELK-----------KYE 426 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--CcChhhhHHHHHHHHHHHHhc-----------ccc
Confidence 1100 0 001111111111 2234455666667766544322 122344567777766665411 124
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCc
Q 024620 158 STLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGE 222 (265)
Q Consensus 158 ~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~e 222 (265)
.|.+.|.++..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=-..+++.+.
T Consensus 427 ~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~ 489 (508)
T KOG1840|consen 427 EAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASP 489 (508)
T ss_pred hHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 5889999999999 67999999999999999875 667899999999999887655555555544
No 56
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=28.15 E-value=4.3e+02 Score=23.47 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHH-HhhhhhhcCcchhhHHHHH
Q 024620 17 YMAKLAEQAERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDHVSTIRD 95 (265)
Q Consensus 17 ~~Aklaeq~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~-~eqk~~~~~~~~~~~~i~~ 95 (265)
|+++|..+-.||+-+-.....-+ +..++|-.-+-..++.-+...++.+|--.. +..-+ ..+ .
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL-------~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe---------~~L-e 185 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL-------EKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE---------ESL-E 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------HHH-H
Confidence 66777777777776655543333 123455556666666666666666665421 00000 000 1
Q ss_pred HHHHHHHHHHHHhHhHHHHhh
Q 024620 96 YRSKIETELSSICDGILKLLD 116 (265)
Q Consensus 96 yr~kie~EL~~~C~eii~lId 116 (265)
-+.+=..||..||+++|.-++
T Consensus 186 QK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 186 QKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 223445789999999987543
No 57
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.06 E-value=1.2e+02 Score=32.88 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHh--cCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 024620 161 TAYKAAQDIANA--ELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 215 (265)
Q Consensus 161 ~aY~~A~~la~~--~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~ 215 (265)
++|+.|+.+-.. ...|.||.-|...-||=+| -|+.+.++.+|-.|+..+..
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhh
Confidence 677778776644 6889999988888777444 69999999999999988744
No 58
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.80 E-value=70 Score=20.60 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=26.7
Q ss_pred cccchhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024620 138 DYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELAPT 177 (265)
Q Consensus 138 DyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~la~~~L~pt 177 (265)
|.|--++|+.-..++. +.|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4445567776655543 578889999999988878773
No 59
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=5e+02 Score=26.00 Aligned_cols=172 Identities=21% Similarity=0.247 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHh--cCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHH----HHHHHHHhhh-hhhcC
Q 024620 13 EENVYMAKLAEQA--ERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRAS----WRIISSIEQK-EESRG 85 (265)
Q Consensus 13 e~li~~Aklaeq~--eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s----~R~l~~~eqk-~~~~~ 85 (265)
+.++.....++++ +.||+-..-+++.- ..+ .- |+.=.|+.+.+.|.. .++-.++..- +..-.
T Consensus 15 ekvlqk~g~~~~TkD~~FE~~~~~f~~~e-~e~--~k--------Lqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~ 83 (460)
T KOG3771|consen 15 EKVLQKLGKVDETKDEQFEQEERNFNKQE-AEG--KR--------LQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWP 83 (460)
T ss_pred HHHHhhcCCcccccchHHHHHHHHHHHHH-HHH--HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 3444444456665 66777777776654 222 23 333344444433322 1111122111 11111
Q ss_pred cchhhHHHHHHHHHHHHHHH-HHhHhHHHHhhhccC--CC-----CCCCchhhHHhhhhccccchhhhhcCchhH----H
Q 024620 86 NEDHVSTIRDYRSKIETELS-SICDGILKLLDSRLI--PC-----ASSGDSKVFYLKMKGDYHRYLAEFKTGAER----K 153 (265)
Q Consensus 86 ~~~~~~~i~~yr~kie~EL~-~~C~eii~lId~~Li--p~-----~~~~eskVfy~KmkgDyyRYlaE~~~~~~~----~ 153 (265)
....++.+.+....+-.|+. .+|+.|+.-|+.++- |. ..-..-.|=|-+++.-|-.+-.-..+++.+ .
T Consensus 84 g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAe 163 (460)
T KOG3771|consen 84 GRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAE 163 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHH
Confidence 23456677777777778887 888888888887752 22 112234455666655555544444333222 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHH--------hhhHHHHHHHH
Q 024620 154 EAAESTLTAYKAAQDIANAELAPTHPIRLGL--------ALNFSVFYYEI 195 (265)
Q Consensus 154 ~~~~~A~~aY~~A~~la~~~L~pt~pirLgL--------aLN~SVF~yEi 195 (265)
+=.+.|++-|+.--......||.---.|+|. +-=-.|||+|.
T Consensus 164 eEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Em 213 (460)
T KOG3771|consen 164 EELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEM 213 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 1234566667666655555666655555554 33347888886
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=27.46 E-value=6.5e+02 Score=25.38 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC------CCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024620 150 AERKEAAESTLTAYKAAQDIANAELA------PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 211 (265)
Q Consensus 150 ~~~~~~~~~A~~aY~~A~~la~~~L~------pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 211 (265)
..+..++..-...|...++... .++ +..|.-+--++.|-.-+|+.+|+.++|+....+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455566666666666554332 233 235777777888888899999999999998887754
No 61
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=27.09 E-value=2e+02 Score=25.78 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=23.2
Q ss_pred HHHHHHHHH-HHHhcCCCCCcchHHHhhhHHHHHHHH
Q 024620 160 LTAYKAAQD-IANAELAPTHPIRLGLALNFSVFYYEI 195 (265)
Q Consensus 160 ~~aY~~A~~-la~~~L~pt~pirLgLaLN~SVF~yEi 195 (265)
...|-+|++ +....|...+|=-=.--||||||.-|.
T Consensus 39 e~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel 75 (213)
T cd07640 39 EEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREV 75 (213)
T ss_pred HHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Confidence 446777776 345567765543333368999999884
No 62
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=27.05 E-value=3e+02 Score=22.03 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 212 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~ 212 (265)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|.+++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5789999999762 344 4555555566654444 589999999998887654
No 63
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.55 E-value=1.9e+02 Score=27.29 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 024620 157 ESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 211 (265)
Q Consensus 157 ~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd 211 (265)
+.|...|.+|+.+ +|-...+.+|.+..|.. +|+.+.|+..+.+|++
T Consensus 19 ~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAIDL--------DPNNAELYADRAQANIK-LGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 64
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=25.44 E-value=1.2e+02 Score=20.35 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=26.1
Q ss_pred hcCHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 024620 25 AERYEEMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQK 80 (265)
Q Consensus 25 ~eRy~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~~R~s~R~l~~~eqk 80 (265)
.|+|++++..+++++ ... |. +.+=+-.+..+|-.. |..-.|.+++..+...
T Consensus 4 ~~~~~~A~~~~~~~l-~~~--p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKAL-QRN--PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHH-HHT--TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHH-HHC--CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 456666666666666 433 33 555555555555433 4455555555544443
No 65
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=23.23 E-value=86 Score=33.19 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHH-hhhHHHHHHHH
Q 024620 156 AESTLTAYKAAQDIANAELAPTHPIRLGL-ALNFSVFYYEI 195 (265)
Q Consensus 156 ~~~A~~aY~~A~~la~~~L~pt~pirLgL-aLN~SVF~yEi 195 (265)
-++..+|-|+|+.+|...+.|.-.+-|=+ +||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 46789999999999998887544444443 89999999963
No 66
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=22.72 E-value=1.5e+02 Score=20.15 Aligned_cols=30 Identities=30% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 13 EENVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 13 e~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
.-+..+|.+..+.|+|.+.+..+.+++ +.+
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l-~~~ 59 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERAL-ELS 59 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHH-HHC
Confidence 345668888888888888888888888 554
No 67
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.57 E-value=2.3e+02 Score=26.72 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHH
Q 024620 158 STLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 209 (265)
Q Consensus 158 ~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~a 209 (265)
.|.+.|.+|+ .|.|+|||+.. |-+-=|- -+|..+.|++-|+.|
T Consensus 99 eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~-~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 99 EAVDKYTEAI-----ELDPTNAVYYC---NRAAAYS-KLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHH-----hcCCCcchHHH---HHHHHHH-HhcchHHHHHHHHHH
Confidence 4666666666 37788877532 2222111 245555555555544
No 68
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=22.45 E-value=3.2e+02 Score=20.33 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q 024620 27 RYEEMVEFMEKVSASVESSEELTVEERNLLSVAYK 61 (265)
Q Consensus 27 Ry~Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayK 61 (265)
+.=||...++.= .. +.||.+|+.+|..+.-
T Consensus 39 ~tID~L~mL~eK---Tk--GNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 39 QTIDLLAMLQEK---TK--GNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHHHHH---Hc--cCCCHHHHHHHHHHHH
Confidence 455888887773 35 8999999999977643
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=22.17 E-value=1.1e+03 Score=26.04 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 14 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
..+.+|++.-..|+|++.+..+++++ ..+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l-~~~ 142 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLF-NGA 142 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHc-cCC
Confidence 35788999999999999999999988 543
No 70
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=21.92 E-value=1e+02 Score=24.57 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=29.7
Q ss_pred hCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhhc
Q 024620 196 LNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 244 (265)
Q Consensus 196 ~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~ 244 (265)
.+.+....++=..+|..+...|....+..-.+...+ +-|.+|..+|+.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~~~~~~-~AL~~N~rLW~~ 57 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPRSREAL-EALHFNRRLWTI 57 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHHHH
Confidence 334444555556677777777766553222222223 999999999995
No 71
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.90 E-value=1.3e+02 Score=25.71 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhhhhh
Q 024620 30 EMVEFMEKVSASVESSEELTVEERNLLSVAYKNVIGA 66 (265)
Q Consensus 30 Dm~~~mk~~i~~~~~~~eLt~eERnLlSvayKn~i~~ 66 (265)
..++..++++ +.. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~-ee~--eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELI-EED--EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHH-HHh--hcCCHHHHHHHHhhhHHHhhc
Confidence 4566777888 544 899999999999999888754
No 72
>PHA02103 hypothetical protein
Probab=21.88 E-value=27 Score=28.12 Aligned_cols=15 Identities=40% Similarity=0.611 Sum_probs=11.7
Q ss_pred hccccchhhhhcCch
Q 024620 136 KGDYHRYLAEFKTGA 150 (265)
Q Consensus 136 kgDyyRYlaE~~~~~ 150 (265)
.-|||||.+|-..+-
T Consensus 78 ipdyyryf~ee~e~i 92 (135)
T PHA02103 78 IPDYYRYFGEEAEGV 92 (135)
T ss_pred ChHHHHHhcccchhh
Confidence 479999999976653
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=20.59 E-value=8.8e+02 Score=25.55 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHhHhHHHHhhhccCCCCCCC
Q 024620 48 LTVEERNLLSVAYKNVIGA-RRASWRIISSIEQKEESRGNEDHVSTIRDYRSKIETELSSICDGILKLLDSRLIPCASSG 126 (265)
Q Consensus 48 Lt~eERnLlSvayKn~i~~-~R~s~R~l~~~eqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~ 126 (265)
|++.|-.||-.+.|..=+. ++.+++.+.+|-.+....|.+--.+-+.-+.--=.+|-...|.-.+. .+.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----------~d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----------NDL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc----------cCc
Confidence 8889999999999976554 89999999988877655543322222111111112223333332222 112
Q ss_pred chhhHHhhhhccccchhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcC------------------------------CC
Q 024620 127 DSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAEL------------------------------AP 176 (265)
Q Consensus 127 eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~la~~~L------------------------------~p 176 (265)
.| -++|..-|=+||= +|+ -..|..||+.|+.+...++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~--------dK~--Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRS--------DKK--YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhh--------hhh--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 3566666766661 121 1457788888875543221 11
Q ss_pred CCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHhhHhhhh
Q 024620 177 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWT 243 (265)
Q Consensus 177 t~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~ 243 (265)
.|.-++|+|+ =++ ..|+...|..|..+--.... ..++-+.|.-+.++| ..|..+-.
T Consensus 142 ~ra~w~~~Av----s~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~L---y~n~i~~E 197 (700)
T KOG1156|consen 142 QRASWIGFAV----AQH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELLL---YQNQILIE 197 (700)
T ss_pred hHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHHH---HHHHHHHH
Confidence 2222333332 223 35888888887765444333 345656666666554 44444433
No 74
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=20.54 E-value=3.3e+02 Score=25.03 Aligned_cols=69 Identities=29% Similarity=0.415 Sum_probs=42.2
Q ss_pred HHHHHHHHHh--cCCCCCcc------hHHHhhhHHHHHHHHhCChH---HHHHHHHHHHHHHHHhhcccCccch-HHHHH
Q 024620 163 YKAAQDIANA--ELAPTHPI------RLGLALNFSVFYYEILNSPD---RACNLAKQAFDEAIAELDTLGEESY-KDSTL 230 (265)
Q Consensus 163 Y~~A~~la~~--~L~pt~pi------rLgLaLN~SVF~yEi~~~~~---~A~~iAk~afd~Ai~~ld~l~ee~y-~ds~~ 230 (265)
|..|+..+.. .+-|+||- -.||+ +|....++. .+..-|..+|++.+. .-+...| .|+..
T Consensus 87 y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~Ya~dA~~ 157 (254)
T COG4105 87 YDLALAYIDRFIRLYPTHPNADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSRYAPDAKA 157 (254)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHH---HCCCCcchhhHHH
Confidence 4456655554 58899992 23555 333334443 455555555555555 4666665 77999
Q ss_pred HHHHHHhhHh
Q 024620 231 IMQLLRDNLT 240 (265)
Q Consensus 231 IlqLLrDNL~ 240 (265)
-|..++|-|.
T Consensus 158 ~i~~~~d~LA 167 (254)
T COG4105 158 RIVKLNDALA 167 (254)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 75
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.49 E-value=6.2e+02 Score=23.07 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q 024620 14 ENVYMAKLAEQAERYEEMVEFMEKVSASVE 43 (265)
Q Consensus 14 ~li~~Aklaeq~eRy~Dm~~~mk~~i~~~~ 43 (265)
-|+-+|.+.++.+.|++.++-.|+|. +..
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~-E~d 198 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKIL-ESD 198 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HhC
Confidence 45567888888899999998888888 654
No 76
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=20.36 E-value=1.2e+02 Score=26.82 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 024620 156 AESTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 213 (265)
Q Consensus 156 ~~~A~~aY~~A~~la~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iAk~afd~A 213 (265)
-+.|.++|++|..-. ..| ..++...+|+.|||..||.=
T Consensus 15 Ye~A~~~Ye~av~ng------~~~--------------q~~Kql~KA~NIAKse~drd 52 (199)
T PF08717_consen 15 YETARQAYEEAVANG------SSP--------------QELKQLKKAMNIAKSEFDRD 52 (199)
T ss_dssp HHHHHHHHHHHHHCT--------H--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC------CCH--------------HHHHHHHHHHhHHHHHHhHH
Confidence 468999999997611 111 13567789999999999843
Done!