Your job contains 1 sequence.
>024621
MASVCASPAVAAISSPSSQKSRSVAGATKASFLGGKKLKLRKNGATAGTRSVSVSAAAAD
PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIF
IPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDP
IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIY
TGTGPIDNLIAHLADPGHATVFAVS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024621
(265 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2082767 - symbol:LHCA2 "photosystem I light ha... 1077 5.5e-109 1
TAIR|locus:2202150 - symbol:Lhca6 "photosystem I light ha... 776 4.3e-77 1
TAIR|locus:2079117 - symbol:LHCA4 "light-harvesting chlor... 562 2.1e-54 1
TAIR|locus:2825741 - symbol:Lhca5 "photosystem I light ha... 504 2.9e-48 1
TAIR|locus:2146544 - symbol:AT5G28450 species:3702 "Arabi... 503 3.7e-48 1
TAIR|locus:2200868 - symbol:LHCA3 "photosystem I light ha... 449 1.9e-42 1
TAIR|locus:2082717 - symbol:LHCA1 "photosystem I light ha... 370 4.6e-34 1
TAIR|locus:2019287 - symbol:CAB3 "chlorophyll A/B binding... 355 1.8e-32 1
TAIR|locus:2019372 - symbol:CAB2 "chlorophyll A/B-binding... 355 1.8e-32 1
TAIR|locus:2019322 - symbol:CAB1 "chlorophyll A/B binding... 355 1.8e-32 1
TAIR|locus:2040934 - symbol:LHB1B2 "photosystem II light ... 354 2.3e-32 1
TAIR|locus:2040944 - symbol:LHB1B1 "light-harvesting chlo... 354 2.3e-32 1
TAIR|locus:2149765 - symbol:LHCB4.1 "light harvesting com... 212 3.4e-32 2
TAIR|locus:2036209 - symbol:LHCB6 "light harvesting compl... 348 9.8e-32 1
TAIR|locus:2097608 - symbol:LHCB4.2 "light harvesting com... 203 3.0e-31 2
UNIPROTKB|P12330 - symbol:CAB1R "Chlorophyll a-b binding ... 343 3.3e-31 1
TAIR|locus:2044988 - symbol:LHCB2.2 "photosystem II light... 343 3.3e-31 1
TAIR|locus:2042148 - symbol:LHCB2.1 "photosystem II light... 343 3.3e-31 1
UNIPROTKB|P12331 - symbol:CAB2R "Chlorophyll a-b binding ... 342 4.2e-31 1
TAIR|locus:2089139 - symbol:LHCB2.3 "photosystem II light... 341 5.4e-31 1
TAIR|locus:2122794 - symbol:LHCB5 "light harvesting compl... 323 4.4e-29 1
TAIR|locus:2011691 - symbol:AT1G76570 species:3702 "Arabi... 317 1.9e-28 1
TAIR|locus:2162540 - symbol:LHCB3 "light-harvesting chlor... 310 1.0e-27 1
TAIR|locus:2047751 - symbol:LHCB4.3 "light harvesting com... 169 6.1e-25 2
UNIPROTKB|Q93WD2 - symbol:Lhcb4 "Chlorophyll a-b binding ... 160 1.3e-21 2
>TAIR|locus:2082767 [details] [associations]
symbol:LHCA2 "photosystem I light harvesting complex gene
2" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=TAS] [GO:0009782 "photosystem I antenna
complex" evidence=TAS] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002686 GO:GO:0009535 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
TCDB:5.B.4.1.1 UniGene:At.46743 UniGene:At.55066 KO:K08908
EMBL:AF134120 EMBL:AY054670 EMBL:AY065429 EMBL:AY072483
EMBL:BT002070 IPI:IPI00543126 PIR:T50550 RefSeq:NP_191706.2
ProteinModelPortal:Q9SYW8 SMR:Q9SYW8 STRING:Q9SYW8 PRIDE:Q9SYW8
EnsemblPlants:AT3G61470.1 GeneID:825320 KEGG:ath:AT3G61470
TAIR:At3g61470 InParanoid:Q9SYW8 OMA:SWYTAGE PhylomeDB:Q9SYW8
ProtClustDB:CLSN2696878 ArrayExpress:Q9SYW8 Genevestigator:Q9SYW8
Uniprot:Q9SYW8
Length = 257
Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
Identities = 189/211 (89%), Positives = 201/211 (95%)
Query: 53 SVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWA 112
SV A AADP+RP+WFPGSTPPEWLDGSLPGDFGFDPLGL SDP++L+WNVQ+EIVHCRWA
Sbjct: 42 SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101
Query: 113 MLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIK 172
MLGAAGIFIPE LTK+GILNTPSWYTAGE EYFTD TTLF+VE+I IGWAEGRRWADIIK
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIK 161
Query: 173 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 232
PG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVM
Sbjct: 162 PGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 221
Query: 233 GAWFQHIYTGTGPIDNLIAHLADPGHATVFA 263
GAWFQHIYTGTGPIDNL AHLADPGHAT+FA
Sbjct: 222 GAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>TAIR|locus:2202150 [details] [associations]
symbol:Lhca6 "photosystem I light harvesting complex gene
6" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GO:GO:0009507 GO:GO:0016020 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 KO:K08908 EMBL:AY086461 EMBL:BT020322
EMBL:BT020554 IPI:IPI00532569 RefSeq:NP_173349.1 UniGene:At.359
ProteinModelPortal:Q8LCQ4 SMR:Q8LCQ4 STRING:Q8LCQ4 PRIDE:Q8LCQ4
DNASU:838498 EnsemblPlants:AT1G19150.1 GeneID:838498
KEGG:ath:AT1G19150 TAIR:At1g19150 InParanoid:Q8LCQ4 OMA:WFAQAEL
PhylomeDB:Q8LCQ4 ProtClustDB:PLN00098 Genevestigator:Q8LCQ4
Uniprot:Q8LCQ4
Length = 270
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 139/217 (64%), Positives = 164/217 (75%)
Query: 47 AGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEI 106
AG + VS P+RPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDP+TL+W Q+E+
Sbjct: 50 AG-KEVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAEL 108
Query: 107 VHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRR 166
+H RWAML GI IPE L +LG + SWY AG EYF D+TTLF+ +M+ +GWAEGRR
Sbjct: 109 IHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 167 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 226
WAD+IKPG V+ +P +P+ DVGYPGGLWFD + WG GSPE V LRTKEIKNGRL
Sbjct: 169 WADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRL 228
Query: 227 AMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 263
AMLA +G FQ YT PI+NL+AHLADPGH VF+
Sbjct: 229 AMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265
>TAIR|locus:2079117 [details] [associations]
symbol:LHCA4 "light-harvesting chlorophyll-protein
complex I subunit A4" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;NAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0030003 "cellular
cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0009941 GO:GO:0080167 GO:GO:0018298 GO:GO:0009535
GO:GO:0010287 EMBL:AL132955 EMBL:M63931 EMBL:AY093080 EMBL:BT000093
EMBL:AY086470 IPI:IPI00523187 PIR:T45707 RefSeq:NP_190331.3
UniGene:At.21346 UniGene:At.27524 UniGene:At.35504 UniGene:At.35803
UniGene:At.66361 UniGene:At.68076 UniGene:At.71101
ProteinModelPortal:P27521 SMR:P27521 STRING:P27521 PaxDb:P27521
PRIDE:P27521 EnsemblPlants:AT3G47470.1 GeneID:823901
KEGG:ath:AT3G47470 TAIR:At3g47470 eggNOG:NOG249845
HOGENOM:HOG000238033 InParanoid:P27521 KO:K08910 OMA:WFVQAEL
PhylomeDB:P27521 ProtClustDB:PLN00101 Genevestigator:P27521
GermOnline:AT3G47470 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
Uniprot:P27521
Length = 251
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 106/211 (50%), Positives = 140/211 (66%)
Query: 51 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCR 110
S S+ + + W PG P++L GSL GD GFDPLGL DPE L+W VQ+E+V+ R
Sbjct: 42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGR 101
Query: 111 WAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADI 170
WAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF ++TLF++E I + E RRW DI
Sbjct: 102 WAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDI 161
Query: 171 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 230
PG VN DPIF L +VGYPGG+ F+PL + +P +E + KE+ NGRLAMLA
Sbjct: 162 KNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNF---AP--TQEAKEKELANGRLAMLA 215
Query: 231 VMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
+G QH TG GP +NL+ HL+DP H T+
Sbjct: 216 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246
>TAIR|locus:2825741 [details] [associations]
symbol:Lhca5 "photosystem I light harvesting complex gene
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009782 "photosystem I
antenna complex" evidence=IDA] [GO:0031409 "pigment binding"
evidence=IDA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684 EMBL:AC083835
GO:GO:0009535 GO:GO:0031409 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009768
UniGene:At.52042 EMBL:AY062097 EMBL:AY090263 EMBL:AK221694
IPI:IPI00542586 PIR:F96510 RefSeq:NP_175137.1 RefSeq:NP_849778.1
UniGene:At.20798 ProteinModelPortal:Q9C639 SMR:Q9C639 STRING:Q9C639
PRIDE:Q9C639 EnsemblPlants:AT1G45474.1 EnsemblPlants:AT1G45474.2
GeneID:841099 KEGG:ath:AT1G45474 TAIR:At1g45474 InParanoid:Q9C639
KO:K08911 OMA:VQASVTH PhylomeDB:Q9C639 ProtClustDB:PLN00147
Genevestigator:Q9C639 GO:GO:0009782 Uniprot:Q9C639
Length = 256
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 104/224 (46%), Positives = 139/224 (62%)
Query: 49 TRSVS-VSAAAADPN------RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWN 101
TR +S V AA N R W PG PP +LDG+L GD+GFDPLGLG DPE+L+W
Sbjct: 25 TRRISSVKAAGGGINPTVAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWY 84
Query: 102 VQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDTTTLFIVEMIFIG 160
VQ+E+VH R+AMLG AGI +LL GI N P WY AG +++ F T TL +V+ + +G
Sbjct: 85 VQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMG 144
Query: 161 WAEGRRWADIIKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELR 217
+AE +R+ D + PG + F L G + GYPGG +PLG + + +
Sbjct: 145 FAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWK 203
Query: 218 TKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
KEIKNGRLAM+A++G + Q T TGPIDNL+ HL++P H T+
Sbjct: 204 LKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
>TAIR|locus:2146544 [details] [associations]
symbol:AT5G28450 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002688 GO:GO:0009507 GO:GO:0016020
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00523588 RefSeq:NP_198197.1 UniGene:At.46743
UniGene:At.55066 ProteinModelPortal:F4K8I1 SMR:F4K8I1 DNASU:832932
EnsemblPlants:AT5G28450.1 GeneID:832932 KEGG:ath:AT5G28450
KO:K08908 PhylomeDB:F4K8I1 Uniprot:F4K8I1
Length = 173
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 91/104 (87%), Positives = 96/104 (92%)
Query: 162 AEGR--RWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTK 219
+ GR R DIIKPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP K+KELRTK
Sbjct: 65 SNGRKGRAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTK 124
Query: 220 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 263
EIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FA
Sbjct: 125 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 168
>TAIR|locus:2200868 [details] [associations]
symbol:LHCA3 "photosystem I light harvesting complex gene
3" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GO:GO:0009535 GO:GO:0010287 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 PDB:2O01 PDBsum:2O01 UniGene:At.2877 EMBL:AC005850
UniGene:At.21403 EMBL:AY059879 EMBL:AY093370 IPI:IPI00532189
PIR:E96640 RefSeq:NP_001185280.1 RefSeq:NP_176347.1
UniGene:At.20472 UniGene:At.71924 UniGene:At.71944
ProteinModelPortal:Q9SY97 SMR:Q9SY97 STRING:Q9SY97 PRIDE:Q9SY97
ProMEX:Q9SY97 EnsemblPlants:AT1G61520.1 EnsemblPlants:AT1G61520.3
GeneID:842446 KEGG:ath:AT1G61520 TAIR:At1g61520 InParanoid:Q9SY97
KO:K08909 OMA:LMGFAEH PhylomeDB:Q9SY97 ProtClustDB:PLN00048
ArrayExpress:Q9SY97 Genevestigator:Q9SY97 Uniprot:Q9SY97
Length = 273
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 100/212 (47%), Positives = 130/212 (61%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLG 115
NRPLWF S +LDGSLPGD+GFDPLGL SDPE RW EI++ R+AMLG
Sbjct: 52 NRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLG 110
Query: 116 AAGIFIPELLTKLGILNTPS---WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRR 166
AAG PE+L K G++ + W+ AG Y+ D TLF++EM +G+AE RR
Sbjct: 111 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRR 170
Query: 167 WADIIKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNG 224
D PG + K L G+ + YPGG +F+PLG+G + +KEL+ KE+KNG
Sbjct: 171 LQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDE-KSLKELKLKEVKNG 229
Query: 225 RLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 256
RLAMLA++G + Q + TG GP NL+ HLADP
Sbjct: 230 RLAMLAILGYFIQGLVTGVGPYQNLLDHLADP 261
>TAIR|locus:2082717 [details] [associations]
symbol:LHCA1 "photosystem I light harvesting complex gene
1" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009768 "photosynthesis, light harvesting in photosystem I"
evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL049655
GO:GO:0046872 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:M85150 EMBL:X56062
EMBL:AF324692 EMBL:AF325016 EMBL:AF326866 EMBL:AF339688
EMBL:AF361847 EMBL:AY070473 EMBL:AY094437 EMBL:BT000852
EMBL:AK317555 IPI:IPI00516813 PIR:S25435 RefSeq:NP_191049.1
UniGene:At.23982 UniGene:At.67867 PDB:2O01 PDB:2WSC PDB:2WSE
PDB:2WSF PDBsum:2O01 PDBsum:2WSC PDBsum:2WSE PDBsum:2WSF
ProteinModelPortal:Q01667 SMR:Q01667 DIP:DIP-59003N STRING:Q01667
PaxDb:Q01667 PRIDE:Q01667 ProMEX:Q01667 EnsemblPlants:AT3G54890.1
GeneID:824654 KEGG:ath:AT3G54890 TAIR:At3g54890 eggNOG:NOG263751
InParanoid:Q01667 KO:K08907 OMA:LAIEFLA PhylomeDB:Q01667
ProtClustDB:PLN00099 EvolutionaryTrace:Q01667 Genevestigator:Q01667
GO:GO:0009768 Uniprot:Q01667
Length = 241
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 87/205 (42%), Positives = 111/205 (54%)
Query: 66 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 125
W PG P +LDGS PGDFGFDPLGLG P L +SE++HCRWAML GI +PE L
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 126 TKLGILNTPSWYT--AGELEYFTDTT------TLFIVEMIFIGWAEGRRWADIIKPGCVN 177
+ W G+ Y + T+ +E + I + E +R +
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SME 159
Query: 178 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 237
DP K YPGG FDPLG+ S P+K++EL+ KEIKNGRLA+LA +G Q
Sbjct: 160 KDP--EKKK-------YPGGA-FDPLGY-SKDPKKLEELKVKEIKNGRLALLAFVGFCVQ 208
Query: 238 H-IYTGTGPIDNLIAHLADPGHATV 261
Y GTGP++NL HLADP H +
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNI 233
>TAIR|locus:2019287 [details] [associations]
symbol:CAB3 "chlorophyll A/B binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GO:GO:0005739 GO:GO:0046872
GO:GO:0018298 GO:GO:0009535 UniGene:At.49175 GO:GO:0010287
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00527705 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 KO:K08912
EMBL:X03908 EMBL:AY065165 EMBL:AY114594 ProteinModelPortal:Q8VZ87
SMR:Q8VZ87 IntAct:Q8VZ87 STRING:Q8VZ87 PaxDb:Q8VZ87 PRIDE:Q8VZ87
TAIR:At1g29910 eggNOG:NOG327854 PhylomeDB:Q8VZ87
Genevestigator:Q8VZ87 GermOnline:AT1G29910 Uniprot:Q8VZ87
Length = 267
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 86/206 (41%), Positives = 115/206 (55%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
F G +P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL
Sbjct: 62 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 127 KLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG--RRWA-DIIKPGCVNTDPIF 182
+ G+ W+ AG + F+D ++ + A+ WA +I G V +
Sbjct: 121 RNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVH-AQSILAIWATQVILMGAVEGYRVA 178
Query: 183 PNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I T
Sbjct: 179 GNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 242 GTGPIDNLIAHLADP--GHATVFAVS 265
G GPI+NL HLADP +A FA +
Sbjct: 237 GKGPIENLADHLADPVNNNAWAFATN 262
>TAIR|locus:2019372 [details] [associations]
symbol:CAB2 "chlorophyll A/B-binding protein 2"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009750
"response to fructose stimulus" evidence=IEP] [GO:0005794 "Golgi
apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0048046 GO:GO:0009750 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:X03907
EMBL:AY052237 EMBL:AY054198 EMBL:AY060500 EMBL:AY062814
EMBL:AY081572 EMBL:AY128345 EMBL:BT000726 EMBL:AY086905
IPI:IPI00527705 PIR:A29280 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 ProteinModelPortal:P0CJ48
SMR:P0CJ48 IntAct:P0CJ48 PRIDE:P0CJ48 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 TAIR:At1g29920
HOGENOM:HOG000238032 KO:K08912 PhylomeDB:P0CJ48 Uniprot:P0CJ48
Length = 267
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 86/206 (41%), Positives = 115/206 (55%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
F G +P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL
Sbjct: 62 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 127 KLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG--RRWA-DIIKPGCVNTDPIF 182
+ G+ W+ AG + F+D ++ + A+ WA +I G V +
Sbjct: 121 RNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVH-AQSILAIWATQVILMGAVEGYRVA 178
Query: 183 PNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I T
Sbjct: 179 GNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 242 GTGPIDNLIAHLADP--GHATVFAVS 265
G GPI+NL HLADP +A FA +
Sbjct: 237 GKGPIENLADHLADPVNNNAWAFATN 262
>TAIR|locus:2019322 [details] [associations]
symbol:CAB1 "chlorophyll A/B binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS;TAS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0015979
"photosynthesis" evidence=ISS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
UniGene:At.23809 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.24351 UniGene:At.32199 UniGene:At.43708
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 eggNOG:NOG327854
GermOnline:AT1G29910 EMBL:X03909 EMBL:AF428359 EMBL:AY045673
EMBL:AY050935 EMBL:AY058180 EMBL:AY091169 EMBL:X15221 EMBL:X15222
EMBL:Z17799 IPI:IPI00547631 PIR:A86423 RefSeq:NP_174286.1
UniGene:At.19140 UniGene:At.48174 UniGene:At.71551
ProteinModelPortal:P04778 SMR:P04778 IntAct:P04778 STRING:P04778
PaxDb:P04778 PRIDE:P04778 ProMEX:P04778 EnsemblPlants:AT1G29930.1
GeneID:839871 KEGG:ath:AT1G29930 TAIR:At1g29930 InParanoid:P04778
OMA:SSGIEFY PhylomeDB:P04778 ProtClustDB:PLN00025
Genevestigator:P04778 Uniprot:P04778
Length = 267
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 86/206 (41%), Positives = 115/206 (55%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
F G +P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL
Sbjct: 62 FSGESP-SYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120
Query: 127 KLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG--RRWA-DIIKPGCVNTDPIF 182
+ G+ W+ AG + F+D ++ + A+ WA +I G V +
Sbjct: 121 RNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVH-AQSILAIWATQVILMGAVEGYRVA 178
Query: 183 PNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241
N L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I T
Sbjct: 179 GNGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 242 GTGPIDNLIAHLADP--GHATVFAVS 265
G GPI+NL HLADP +A FA +
Sbjct: 237 GKGPIENLADHLADPVNNNAWAFATN 262
>TAIR|locus:2040934 [details] [associations]
symbol:LHB1B2 "photosystem II light harvesting complex
gene B1B2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0009769 "photosynthesis, light
harvesting in photosystem II" evidence=TAS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0015979 "photosynthesis" evidence=ISS] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.32199
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025
UniGene:At.23647 UniGene:At.27457 UniGene:At.24064 UniGene:At.24888
EMBL:AF372886 EMBL:AY039561 EMBL:AY045806 EMBL:AF428397
EMBL:AF419548 EMBL:AF419587 EMBL:AY065125 EMBL:AY079101
EMBL:AY079110 EMBL:AY081587 EMBL:AY142513 EMBL:AK229627 EMBL:X64460
IPI:IPI00530785 PIR:S23546 RefSeq:NP_565786.1 UniGene:At.71003
UniGene:At.71384 ProteinModelPortal:Q39141 SMR:Q39141 IntAct:Q39141
STRING:Q39141 PRIDE:Q39141 EnsemblPlants:AT2G34420.1 GeneID:818005
KEGG:ath:AT2G34420 TAIR:At2g34420 InParanoid:Q39141
PhylomeDB:Q39141 ArrayExpress:Q39141 Genevestigator:Q39141
Uniprot:Q39141
Length = 265
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/206 (41%), Positives = 115/206 (55%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL
Sbjct: 60 FSGE-PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 118
Query: 127 KLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG--RRWA-DIIKPGCVNTDPIF 182
+ G+ W+ AG + F+D ++ + A+ WA +I G V +
Sbjct: 119 RNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVH-AQSILAIWATQVILMGAVEGYRVA 176
Query: 183 PNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241
+ L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I T
Sbjct: 177 GDGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 234
Query: 242 GTGPIDNLIAHLADP--GHATVFAVS 265
G GP++NL HLADP +A FA +
Sbjct: 235 GKGPLENLADHLADPVNNNAWAFATN 260
>TAIR|locus:2040944 [details] [associations]
symbol:LHB1B1 "light-harvesting chlorophyll-protein
complex II subunit B1" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0009769
"photosynthesis, light harvesting in photosystem II" evidence=TAS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0010287 "plastoglobule"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.66422
UniGene:At.71449 UniGene:At.71528 HOGENOM:HOG000238032 KO:K08912
ProtClustDB:PLN00025 UniGene:At.22980 UniGene:At.71384
EMBL:AF326864 EMBL:AF339687 EMBL:AY120776 EMBL:BT002103 EMBL:X64459
IPI:IPI00535697 PIR:S25677 RefSeq:NP_565787.1 UniGene:At.67299
UniGene:At.71696 ProteinModelPortal:Q39142 SMR:Q39142 STRING:Q39142
PRIDE:Q39142 EnsemblPlants:AT2G34430.1 GeneID:818006
KEGG:ath:AT2G34430 TAIR:At2g34430 InParanoid:Q39142 OMA:RITMRKA
PhylomeDB:Q39142 ArrayExpress:Q39142 Genevestigator:Q39142
Uniprot:Q39142
Length = 266
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/206 (41%), Positives = 115/206 (55%)
Query: 67 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126
F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL
Sbjct: 61 FSGE-PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 119
Query: 127 KLGI-LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEG--RRWA-DIIKPGCVNTDPIF 182
+ G+ W+ AG + F+D ++ + A+ WA +I G V +
Sbjct: 120 RNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVH-AQSILAIWATQVILMGAVEGYRVA 177
Query: 183 PNNKL-TGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241
+ L D+ YPGG FDPLG + PE EL+ KE+KNGRLAM ++ G + Q I T
Sbjct: 178 GDGPLGEAEDLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 242 GTGPIDNLIAHLADP--GHATVFAVS 265
G GP++NL HLADP +A FA +
Sbjct: 236 GKGPLENLADHLADPVNNNAWAFATN 261
>TAIR|locus:2149765 [details] [associations]
symbol:LHCB4.1 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0018298
GO:GO:0009535 GO:GO:0010287 HOGENOM:HOG000238033 GO:GO:0009522
GO:GO:0009523 GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915 EMBL:X71878
EMBL:AL161946 EMBL:AF370474 EMBL:AY048262 EMBL:AY048300
EMBL:AY057641 EMBL:AY059861 EMBL:AY081680 EMBL:AY092980
EMBL:AY133566 EMBL:BT000363 IPI:IPI00542715 PIR:S33443
RefSeq:NP_195773.1 UniGene:At.23015 UniGene:At.23659
UniGene:At.23691 UniGene:At.24017 UniGene:At.75201
ProteinModelPortal:Q07473 SMR:Q07473 IntAct:Q07473 STRING:Q07473
PaxDb:Q07473 PRIDE:Q07473 EnsemblPlants:AT5G01530.1 GeneID:830325
KEGG:ath:AT5G01530 TAIR:At5g01530 InParanoid:Q07473 OMA:PLHTTIF
PhylomeDB:Q07473 ProtClustDB:PLN00187 Genevestigator:Q07473
GermOnline:AT5G01530 Uniprot:Q07473
Length = 290
Score = 212 (79.7 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 56/159 (35%), Positives = 82/159 (51%)
Query: 103 QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWA 162
+ E++H RWAML G E LT G+ +W AG++E D ++ + F
Sbjct: 138 ECELIHGRWAMLATLGALSVEWLT--GV----TWQDAGKVE-LVDGSSYLGQPLPFS--I 188
Query: 163 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 222
W +++ G + N +L YPGG +FDPLG + PEK +L+ EIK
Sbjct: 189 STLIWIEVLVIGYIEFQR---NAELDSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIK 244
Query: 223 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
+ RLAM+A +G Q TG GP++N HL+DP H T+
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 283
Score = 156 (60.0 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS 104
+RPLW+PG+ P+WLDGSL GD+GFDP GLG E L++++ S
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDS 96
Score = 49 (22.3 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 213 VKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242
++ R E+ +GR AMLA +GA TG
Sbjct: 133 IQRFRECELIHGRWAMLATLGALSVEWLTG 162
>TAIR|locus:2036209 [details] [associations]
symbol:LHCB6 "light harvesting complex photosystem II
subunit 6" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IMP;NAS] [GO:0009783 "photosystem II
antenna complex" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010196 "nonphotochemical quenching"
evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006816 "calcium ion transport" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 EMBL:AC034256 HOGENOM:HOG000238033 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009783 GO:GO:0010196
UniGene:At.25300 EMBL:AF332425 EMBL:AY065113 EMBL:AY081644
IPI:IPI00524194 PIR:F86292 RefSeq:NP_173034.1 UniGene:At.15569
UniGene:At.72611 UniGene:At.74824 UniGene:At.74983
ProteinModelPortal:Q9LMQ2 SMR:Q9LMQ2 STRING:Q9LMQ2 PaxDb:Q9LMQ2
PRIDE:Q9LMQ2 DNASU:838151 EnsemblPlants:AT1G15820.1 GeneID:838151
KEGG:ath:AT1G15820 TAIR:At1g15820 eggNOG:NOG277110
InParanoid:Q9LMQ2 KO:K08917 OMA:SWIPAFK PhylomeDB:Q9LMQ2
ProtClustDB:PLN00170 ArrayExpress:Q9LMQ2 Genevestigator:Q9LMQ2
Uniprot:Q9LMQ2
Length = 258
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 84/214 (39%), Positives = 122/214 (57%)
Query: 48 GTRSVSVSAAAADPNRPLWFP----GST--PPEWLDGSLPGDFGFDPLGLGSDPETLRWN 101
G +++ V+AAAA P + W P G PEWLDGSLPGDFGFDPLGLG DP L+W
Sbjct: 40 GRKTLIVAAAAAQPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWY 98
Query: 102 VQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAG-ELEYFTDTT--TLFIVEMIF 158
++E++H RWAM GIF+ + + G+ +W+ AG + + + +L +++
Sbjct: 99 REAELIHGRWAMAAVLGIFVGQAWS--GV----AWFEAGAQPDAIAPFSFGSLLGTQLLL 152
Query: 159 IGWAEGRRWADIIKPGCVNTDPIFPNNKL-------TGTDVGYPGGLWFDPLGW------ 205
+GW E +RW D P + + P +K TG D GYPGG +FDPLG
Sbjct: 153 MGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTG-DQGYPGGRFFDPLGLAGKNRD 211
Query: 206 GSGSP--EKVKELRTKEIKNGRLAMLAVMGAWFQ 237
G P EK++ L+ EIK+ RLAM+A++ +F+
Sbjct: 212 GVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFE 245
>TAIR|locus:2097608 [details] [associations]
symbol:LHCB4.2 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009637 "response to blue light" evidence=IEP;RCA] [GO:0010114
"response to red light" evidence=IEP;RCA] [GO:0010218 "response to
far red light" evidence=IEP;RCA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
[GO:0019344 "cysteine biosynthetic process" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 EMBL:AC010871
GO:GO:0009535 HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523
GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08915
ProtClustDB:PLN00187 EMBL:AF134127 EMBL:AY065140 EMBL:AY081608
IPI:IPI00521901 IPI:IPI00542269 PIR:T52317 RefSeq:NP_187506.1
RefSeq:NP_850545.1 UniGene:At.21828 UniGene:At.22485
UniGene:At.6984 ProteinModelPortal:Q9XF88 SMR:Q9XF88 STRING:Q9XF88
PaxDb:Q9XF88 PRIDE:Q9XF88 ProMEX:Q9XF88 EnsemblPlants:AT3G08940.2
GeneID:820043 KEGG:ath:AT3G08940 TAIR:At3g08940 eggNOG:NOG330021
InParanoid:Q9XF88 OMA:TRFTAWF PhylomeDB:Q9XF88
Genevestigator:Q9XF88 GermOnline:AT3G08940 Uniprot:Q9XF88
Length = 287
Score = 203 (76.5 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 55/159 (34%), Positives = 80/159 (50%)
Query: 103 QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWA 162
+ E++H RWAML G E LT G+ +W AG++E D ++ + F
Sbjct: 135 ECELIHGRWAMLATLGAITVEWLT--GV----TWQDAGKVE-LVDGSSYLGQPLPFS--I 185
Query: 163 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 222
W +++ G + N +L YPGG +FDPLG S P K +L+ EIK
Sbjct: 186 STLIWIEVLVIGYIEFQR---NAELDSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIK 241
Query: 223 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATV 261
+ RLAM+ +G Q TG GP++N HL+DP H T+
Sbjct: 242 HARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 280
Score = 156 (60.0 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 48 GTRSVSVSAA-AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS 104
GT+ S A +RPLWFPG+ PE+LDGSL GD+GFDP GLG E L++++ S
Sbjct: 36 GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDS 93
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 213 VKELRTKEIKNGRLAMLAVMGA 234
++ R E+ +GR AMLA +GA
Sbjct: 130 LQRFRECELIHGRWAMLATLGA 151
>UNIPROTKB|P12330 [details] [associations]
symbol:CAB1R "Chlorophyll a-b binding protein 1,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025 EMBL:X13908
EMBL:D00641 EMBL:AP005313 EMBL:AP005700 EMBL:AK060851 PIR:A44956
PIR:S03705 RefSeq:NP_001062939.1 UniGene:Os.7941
ProteinModelPortal:P12330 SMR:P12330 STRING:P12330
EnsemblPlants:LOC_Os09g17740.1 GeneID:4346803
KEGG:dosa:Os09t0346500-04 KEGG:osa:4346803 Gramene:P12330
eggNOG:NOG322441 OMA:GEARITM Uniprot:P12330
Length = 265
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 81/200 (40%), Positives = 107/200 (53%)
Query: 72 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI- 130
PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+
Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 124
Query: 131 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 183
W+ AG L+Y + + + ++ I WA ++ G V I
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----VQVVLMGAVEGYRIAG 178
Query: 184 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 243
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 179 GPLGEVVDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 244 GPIDNLIAHLADPGHATVFA 263
GP++NL HLADP + +A
Sbjct: 237 GPLENLADHLADPVNNNAWA 256
>TAIR|locus:2044988 [details] [associations]
symbol:LHCB2.2 "photosystem II light harvesting complex
gene 2.2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009941 GO:GO:0009535 GO:GO:0010287 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
ProtClustDB:PLN00025 EMBL:AC007211 EMBL:AF134123 EMBL:AY054218
EMBL:AY062563 EMBL:AY066036 EMBL:AY093372 IPI:IPI00542481
PIR:T52324 RefSeq:NP_178582.1 UniGene:At.48420 UniGene:At.63397
UniGene:At.72525 ProteinModelPortal:Q9S7J7 SMR:Q9S7J7 IntAct:Q9S7J7
STRING:Q9S7J7 PaxDb:Q9S7J7 PRIDE:Q9S7J7 ProMEX:Q9S7J7
EnsemblPlants:AT2G05070.1 GeneID:815055 KEGG:ath:AT2G05070
TAIR:At2g05070 eggNOG:NOG312402 InParanoid:Q9S7J7 KO:K08913
OMA:AFATKYT PhylomeDB:Q9S7J7 ArrayExpress:Q9S7J7
Genevestigator:Q9S7J7 Uniprot:Q9S7J7
Length = 265
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 83/206 (40%), Positives = 110/206 (53%)
Query: 61 PNRPLWF-PGS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAG 118
P+RP + P S P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 119 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 170
PE+L+K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 112 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----VQV 165
Query: 171 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 230
+ G + I G D YPGG FDPL PE EL+ KE+KNGRLAM +
Sbjct: 166 VLMGFIEGYRIGGGPLGEGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFS 223
Query: 231 VMGAWFQHIYTGTGPIDNLIAHLADP 256
+ G + Q I TG GPI+NL HLADP
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADP 249
>TAIR|locus:2042148 [details] [associations]
symbol:LHCB2.1 "photosystem II light harvesting complex
gene 2.1" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009535 GO:GO:0010287
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.48420
UniGene:At.63397 KO:K08913 EMBL:AC007443 EMBL:AY052275
EMBL:AY052348 EMBL:BT001933 IPI:IPI00535929 RefSeq:NP_178585.1
ProteinModelPortal:Q9SHR7 SMR:Q9SHR7 STRING:Q9SHR7 PRIDE:Q9SHR7
EnsemblPlants:AT2G05100.1 GeneID:815058 KEGG:ath:AT2G05100
TAIR:At2g05100 InParanoid:Q9SHR7 OMA:MAASAIQ PhylomeDB:Q9SHR7
ArrayExpress:Q9SHR7 Genevestigator:Q9SHR7 Uniprot:Q9SHR7
Length = 265
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 83/206 (40%), Positives = 110/206 (53%)
Query: 61 PNRPLWF-PGS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAG 118
P+RP + P S P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G
Sbjct: 52 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
Query: 119 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 170
PE+L+K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 112 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----VQV 165
Query: 171 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 230
+ G + I G D YPGG FDPL PE EL+ KE+KNGRLAM +
Sbjct: 166 VLMGFIEGYRIGGGPLGEGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFS 223
Query: 231 VMGAWFQHIYTGTGPIDNLIAHLADP 256
+ G + Q I TG GPI+NL HLADP
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADP 249
>UNIPROTKB|P12331 [details] [associations]
symbol:CAB2R "Chlorophyll a-b binding protein 2,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08912
OMA:SSGIEFY ProtClustDB:PLN00025 eggNOG:NOG322441 EMBL:X13909
EMBL:AP003278 EMBL:AK121563 PIR:S03706 RefSeq:NP_001043493.1
UniGene:Os.79136 ProteinModelPortal:P12331 SMR:P12331 STRING:P12331
EnsemblPlants:LOC_Os01g41710.1 GeneID:4324599
KEGG:dosa:Os01t0600900-02 KEGG:dosa:Os03t0165375-00
KEGG:dosa:Os06t0484450-00 KEGG:osa:4324599 Gramene:P12331
Uniprot:P12331
Length = 261
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 81/200 (40%), Positives = 107/200 (53%)
Query: 72 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI- 130
PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+
Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 120
Query: 131 LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 183
W+ AG L+Y + + + ++ I WA ++ G V I
Sbjct: 121 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----VQVVLMGAVEGYRIAG 174
Query: 184 NNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 243
D YPGG FDPLG PE EL+ KEIKNGRLAM ++ G + Q I TG
Sbjct: 175 GPLGEVVDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 232
Query: 244 GPIDNLIAHLADPGHATVFA 263
GP++NL HLADP + +A
Sbjct: 233 GPLENLADHLADPVNNNAWA 252
>TAIR|locus:2089139 [details] [associations]
symbol:LHCB2.3 "photosystem II light harvesting complex
gene 2.3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002686 GO:GO:0009941
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0009535
EMBL:AB018114 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.63397
KO:K08913 EMBL:AF134125 EMBL:AF370557 EMBL:BT006298 IPI:IPI00549108
PIR:T52322 RefSeq:NP_189406.1 UniGene:At.71997 UniGene:At.8025
ProteinModelPortal:Q9XF87 SMR:Q9XF87 STRING:Q9XF87 PRIDE:Q9XF87
EnsemblPlants:AT3G27690.1 GeneID:822391 KEGG:ath:AT3G27690
TAIR:At3g27690 InParanoid:Q9XF87 OMA:QHSSFAG PhylomeDB:Q9XF87
Genevestigator:Q9XF87 Uniprot:Q9XF87
Length = 266
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 82/206 (39%), Positives = 110/206 (53%)
Query: 61 PNRPLWF-PGS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAG 118
P+RP + P S P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G
Sbjct: 53 PDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 112
Query: 119 IFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADI 170
PE+L+K G+ W+ AG L+Y + + ++ I WA +
Sbjct: 113 CTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQV 166
Query: 171 IKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 230
+ G + I G D YPGG FDPL PE EL+ KE+KNGRLAM +
Sbjct: 167 VLMGFIEGYRIGGGPLGEGLDPLYPGGA-FDPLNLAE-DPEAFSELKVKELKNGRLAMFS 224
Query: 231 VMGAWFQHIYTGTGPIDNLIAHLADP 256
+ G + Q I TG GPI+NL H+ADP
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHIADP 250
>TAIR|locus:2122794 [details] [associations]
symbol:LHCB5 "light harvesting complex of photosystem II
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009533 "chloroplast stromal thylakoid"
evidence=IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS;IMP]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009783 "photosystem II antenna complex"
evidence=IMP] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0010196
"nonphotochemical quenching" evidence=IMP] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019344 "cysteine biosynthetic
process" evidence=RCA] [GO:0009517 "PSII associated
light-harvesting complex II" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0009637 GO:GO:0010218 GO:GO:0010114
GO:GO:0018298 GO:GO:0010287 GO:GO:0015979 EMBL:AL049488
EMBL:AL161517 GO:GO:0009522 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
EMBL:AF134129 EMBL:AF326900 EMBL:AF339718 EMBL:AF424597
EMBL:AF380631 EMBL:AY054126 EMBL:AY087939 IPI:IPI00535216
PIR:T04049 RefSeq:NP_192772.1 UniGene:At.23060
ProteinModelPortal:Q9XF89 SMR:Q9XF89 DIP:DIP-59004N STRING:Q9XF89
PaxDb:Q9XF89 PRIDE:Q9XF89 EnsemblPlants:AT4G10340.1 GeneID:826626
KEGG:ath:AT4G10340 TAIR:At4g10340 eggNOG:NOG321165
InParanoid:Q9XF89 KO:K08916 OMA:EGPVENL PhylomeDB:Q9XF89
ProtClustDB:CLSN2685679 Genevestigator:Q9XF89 GermOnline:AT4G10340
GO:GO:0009783 GO:GO:0009517 GO:GO:0010196 Uniprot:Q9XF89
Length = 280
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 84/204 (41%), Positives = 109/204 (53%)
Query: 61 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLG 115
P+R ++ P S PE+L+G + GD+G+DP GLG PE E++H RWAMLG
Sbjct: 65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLG 124
Query: 116 AAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTL-FIVEMIFIGWAEGRRWADIIK 172
AAG IPE L K G P W+ G L D TL + + I I A+++
Sbjct: 125 AAGFIIPEALNKYGANCGPEAVWFKTGAL--LLDGNTLNYFGKNIPINLVLAVV-AEVVL 181
Query: 173 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVM 232
G I N L D +PGG FDPLG PE+ L+ KEIKNGRLAM A++
Sbjct: 182 LGGAEYYRI--TNGLDFEDKLHPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAML 237
Query: 233 GAWFQHIYTGTGPIDNLIAHLADP 256
G + Q TG GP++NL HL+DP
Sbjct: 238 GFFIQAYVTGEGPVENLAKHLSDP 261
>TAIR|locus:2011691 [details] [associations]
symbol:AT1G76570 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009637 "response to
blue light" evidence=IEP] [GO:0010218 "response to far red light"
evidence=IEP] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0015996 "chlorophyll
catabolic process" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0016020
GO:GO:0009637 GO:GO:0010218 EMBL:AC015450 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
IPI:IPI00528080 PIR:G96793 RefSeq:NP_177783.1 UniGene:At.34640
ProteinModelPortal:Q9C9K1 SMR:Q9C9K1 PaxDb:Q9C9K1 PRIDE:Q9C9K1
EnsemblPlants:AT1G76570.1 GeneID:843990 KEGG:ath:AT1G76570
TAIR:At1g76570 eggNOG:NOG237807 InParanoid:Q9C9K1 KO:K14172
OMA:DYGFDIA PhylomeDB:Q9C9K1 ProtClustDB:PLN00171
Genevestigator:Q9C9K1 Uniprot:Q9C9K1
Length = 327
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 79/216 (36%), Positives = 109/216 (50%)
Query: 63 RPLWFPGSTP---PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGI 119
RP WF G P P +L G LPGD+GFD GLG D T EI+H RWAML A G
Sbjct: 111 RPRWF-GPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 169
Query: 120 FIPELLTKLGILN--TPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADI------I 171
IPE+ G + P W+ G + +T + + + ++G I +
Sbjct: 170 LIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMV 229
Query: 172 KPGCVN---TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAM 228
P + + P D+ YPGG FDPL S P ++L+ KEIKNGRLAM
Sbjct: 230 GPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNL-SEDPVAFEDLKVKEIKNGRLAM 288
Query: 229 LAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264
+A +G + Q +TG GP+ NL+ H++DP H + A+
Sbjct: 289 VAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAM 324
>TAIR|locus:2162540 [details] [associations]
symbol:LHCB3 "light-harvesting chlorophyll B-binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS;IMP] [GO:0016020 "membrane" evidence=IEA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0005198 "structural
molecule activity" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002688 GO:GO:0005198
EMBL:AB010695 GO:GO:0009535 UniGene:At.49175 GO:GO:0015979
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.32199 UniGene:At.66422
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.70236
UniGene:At.21173 EMBL:AF134126 EMBL:AF143691 EMBL:AF361858
EMBL:AF372917 EMBL:AY057735 IPI:IPI00532626 PIR:T52318
RefSeq:NP_200238.1 ProteinModelPortal:Q9S7M0 SMR:Q9S7M0
STRING:Q9S7M0 PRIDE:Q9S7M0 EnsemblPlants:AT5G54270.1 GeneID:835515
KEGG:ath:AT5G54270 TAIR:At5g54270 InParanoid:Q9S7M0 KO:K08914
OMA:ADDPVTF PhylomeDB:Q9S7M0 Genevestigator:Q9S7M0 Uniprot:Q9S7M0
Length = 265
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 78/200 (39%), Positives = 106/200 (53%)
Query: 73 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI- 130
P +L G PGD+G+D GL +DPE N E++H RWAMLGA G PE+L K + +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVD 123
Query: 131 LNTPSWYTAGELEYFTDTTTLFI--VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 188
P W+ AG + F++ ++ ++ +I G V F N L
Sbjct: 124 FKEPVWFKAGS-QIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG---FRINGLD 179
Query: 189 GTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 245
G G YPGG +FDPLG P EL+ KEIKNGRLAM ++ G + Q I TG GP
Sbjct: 180 GVGEGNDLYPGGQYFDPLGLAD-DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238
Query: 246 IDNLIAHLADP--GHATVFA 263
++NL+ HL +P +A FA
Sbjct: 239 LENLLDHLDNPVANNAWAFA 258
>TAIR|locus:2047751 [details] [associations]
symbol:LHCB4.3 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 HOGENOM:HOG000238033
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915
OMA:TTLIWIE ProtClustDB:PLN00187 EMBL:AF134128 EMBL:AY070392
EMBL:AY096735 EMBL:AY088398 IPI:IPI00538445 PIR:T52316
RefSeq:NP_181539.1 UniGene:At.24469 ProteinModelPortal:Q9S7W1
SMR:Q9S7W1 PaxDb:Q9S7W1 PRIDE:Q9S7W1 EnsemblPlants:AT2G40100.1
GeneID:818599 KEGG:ath:AT2G40100 TAIR:At2g40100 InParanoid:Q9S7W1
PhylomeDB:Q9S7W1 Genevestigator:Q9S7W1 GermOnline:AT2G40100
Uniprot:Q9S7W1
Length = 276
Score = 169 (64.5 bits), Expect = 6.1e-25, Sum P(2) = 6.1e-25
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 103 QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWA 162
+ E++H RWAMLG G E LT GI +W AG++E ++ ++ + +
Sbjct: 139 ECELIHGRWAMLGTLGAIAVEALT--GI----AWQDAGKVELVEGSS--YLGQPLPFSLT 190
Query: 163 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 222
W +++ G + N++L YPGG +FDPLG + PEK+ L+ EIK
Sbjct: 191 T-LIWIEVLVVGYIEFQR---NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIK 244
Query: 223 NGRLAMLAVMGAWFQHIYTGTGPIDNL 249
+ RLAM+A + Q +TG GP+ L
Sbjct: 245 HSRLAMVAFLIFALQAAFTGKGPVSFL 271
Score = 147 (56.8 bits), Expect = 6.1e-25, Sum P(2) = 6.1e-25
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 60 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWN 101
D +R +WFPG+ PPEWLDGS+ GD GFDP GLG E L+++
Sbjct: 53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYD 94
Score = 46 (21.3 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 213 VKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242
++ R E+ +GR AML +GA TG
Sbjct: 134 IQRFRECELIHGRWAMLGTLGAIAVEALTG 163
>UNIPROTKB|Q93WD2 [details] [associations]
symbol:Lhcb4 "Chlorophyll a-b binding protein CP29"
species:3055 "Chlamydomonas reinhardtii" [GO:0009503 "thylakoid
light-harvesting complex" evidence=IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=NAS] [GO:0016168
"chlorophyll binding" evidence=NAS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 GO:GO:0010287
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:AB051207 EMBL:AB051211
EMBL:AY171230 RefSeq:XP_001697193.1 UniGene:Cre.4370
ProteinModelPortal:Q93WD2 DIP:DIP-48401N STRING:Q93WD2 PRIDE:Q93WD2
GeneID:5722671 KEGG:cre:CHLREDRAFT_184810 eggNOG:NOG319330
KO:K08915 OMA:TTLIWIE ProtClustDB:CLSN2922608
BioCyc:MetaCyc:CHLREDRAFT_184810-MONOMER GO:GO:0009503
Uniprot:Q93WD2
Length = 280
Score = 160 (61.4 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 50/153 (32%), Positives = 74/153 (48%)
Query: 103 QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWA 162
+ E++H RWAML G + E T G+ SW AG++E D + + + F
Sbjct: 135 ECELIHGRWAMLACLGALVAEATT--GV----SWVEAGKVEL--DGASYAGLSLPFS--I 184
Query: 163 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIK 222
W ++I G + N++ YPGG+ FDPL S E+ L+T EIK
Sbjct: 185 TQLIWIEVILVGGAE---FYRNSETNPEKRCYPGGV-FDPLKLASEDEERAFRLKTAEIK 240
Query: 223 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 255
+ RLAM++ G Q + TG G + +L A AD
Sbjct: 241 HARLAMVSFFGYGVQALSTGEGALGSL-AKFAD 272
Score = 136 (52.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 28/51 (54%), Positives = 31/51 (60%)
Query: 46 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE 96
+ GTRS V + LW P +T PEWLDGSLPGD GFDPLGL E
Sbjct: 34 STGTRSGGVGYRKYQGDA-LWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSE 83
Score = 48 (22.0 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 217 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 247
R E+ +GR AMLA +GA TG ++
Sbjct: 134 RECELIHGRWAMLACLGALVAEATTGVSWVE 164
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.138 0.452 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 236 0.00089 113 3 11 22 0.43 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 610 (65 KB)
Total size of DFA: 202 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.03u 0.15s 19.18t Elapsed: 00:00:01
Total cpu time: 19.03u 0.15s 19.18t Elapsed: 00:00:01
Start: Fri May 10 16:12:36 2013 End: Fri May 10 16:12:37 2013