Query 024621
Match_columns 265
No_of_seqs 239 out of 1253
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00098 light-harvesting comp 100.0 1.6E-72 3.4E-77 512.9 20.5 213 52-264 51-263 (267)
2 PLN00101 Photosystem I light-h 100.0 1.1E-70 2.3E-75 496.9 18.6 203 56-264 46-248 (250)
3 PLN00097 photosystem I light h 100.0 3.1E-70 6.8E-75 492.0 19.0 207 55-263 36-244 (244)
4 PLN00048 photosystem I light h 100.0 4E-67 8.6E-72 477.0 15.3 216 47-264 26-258 (262)
5 PLN00147 light-harvesting comp 100.0 1.3E-65 2.7E-70 464.6 18.2 207 57-264 39-248 (252)
6 PLN00187 photosystem II light- 100.0 3.6E-65 7.8E-70 467.9 17.0 185 56-264 45-283 (286)
7 PLN00025 photosystem II light 100.0 7E-64 1.5E-68 455.2 17.6 195 54-264 42-254 (262)
8 PLN00171 photosystem light-ha 100.0 3.2E-62 7E-67 453.2 16.5 203 53-264 98-321 (324)
9 PLN00100 light-harvesting comp 100.0 8.7E-62 1.9E-66 437.1 15.6 179 59-265 31-209 (246)
10 PLN00099 light-harvesting comp 100.0 2.4E-60 5.1E-65 428.5 17.2 185 61-264 42-235 (243)
11 PLN00170 photosystem II light- 100.0 1.9E-56 4.2E-61 404.6 15.3 190 54-250 42-254 (255)
12 PLN00089 fucoxanthin-chlorophy 100.0 2.7E-43 5.7E-48 312.2 13.0 163 67-247 41-208 (209)
13 PF00504 Chloroa_b-bind: Chlor 100.0 8.5E-43 1.8E-47 294.5 12.9 151 72-239 1-156 (156)
14 PLN00120 fucoxanthin-chlorophy 100.0 5.3E-36 1.2E-40 264.4 11.9 144 86-247 47-199 (202)
15 PLN00098 light-harvesting comp 99.6 4.9E-16 1.1E-20 142.5 6.1 57 191-248 76-132 (267)
16 PLN00101 Photosystem I light-h 99.6 8.9E-16 1.9E-20 139.6 5.9 55 191-246 67-121 (250)
17 PLN00170 photosystem II light- 99.6 3.9E-15 8.5E-20 135.6 6.7 74 164-245 51-124 (255)
18 PLN00147 light-harvesting comp 99.5 4.7E-15 1E-19 135.1 3.7 60 73-132 172-231 (252)
19 PLN00048 photosystem I light h 99.5 8.6E-15 1.9E-19 134.1 3.6 55 77-131 186-240 (262)
20 PLN00171 photosystem light-ha 99.5 2.6E-14 5.6E-19 133.8 5.5 54 191-245 124-177 (324)
21 PLN00089 fucoxanthin-chlorophy 99.5 1.8E-14 3.9E-19 128.3 4.1 54 78-131 153-207 (209)
22 PLN00097 photosystem I light h 99.5 3.6E-14 7.8E-19 128.7 5.7 54 191-245 58-111 (244)
23 PLN00025 photosystem II light 99.5 4.8E-14 1E-18 129.1 5.6 53 191-244 67-119 (262)
24 PLN00100 light-harvesting comp 99.4 6.9E-14 1.5E-18 126.8 5.4 50 191-241 49-98 (246)
25 PLN00187 photosystem II light- 99.4 4.2E-14 9E-19 130.8 2.7 55 78-132 212-266 (286)
26 PLN00099 light-harvesting comp 99.4 2.2E-13 4.8E-18 123.6 4.9 51 191-242 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1.5E-12 3.3E-17 110.0 5.9 49 193-243 8-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 5.9E-11 1.3E-15 105.3 3.0 46 78-127 142-194 (202)
29 PHA02337 putative high light i 98.2 1.1E-06 2.3E-11 57.3 3.0 28 218-245 4-31 (35)
30 PLN00084 photosystem II subuni 98.1 2.2E-06 4.7E-11 74.3 3.4 47 211-257 130-177 (214)
31 PLN00014 light-harvesting-like 97.7 3.1E-05 6.7E-10 69.9 3.1 36 217-252 160-195 (250)
32 PHA02337 putative high light i 97.4 6.9E-05 1.5E-09 48.9 0.9 29 102-130 3-31 (35)
33 PLN00014 light-harvesting-like 96.1 0.0021 4.5E-08 58.3 0.8 32 101-132 159-190 (250)
34 PLN00084 photosystem II subuni 95.1 0.017 3.7E-07 50.5 2.9 38 95-132 129-167 (214)
35 PLN02449 ferrochelatase 55.6 8.3 0.00018 38.9 2.3 21 226-246 463-483 (485)
36 KOG0593 Predicted protein kina 48.6 22 0.00048 34.5 3.8 51 82-133 143-204 (396)
37 KOG0742 AAA+-type ATPase [Post 39.1 26 0.00057 35.4 2.9 14 1-14 1-14 (630)
38 KOG0659 Cdk activating kinase 26.5 39 0.00084 32.2 1.6 38 97-135 163-206 (318)
39 PHA00649 hypothetical protein 22.9 1.6E+02 0.0034 22.4 4.0 35 203-238 26-67 (83)
40 PHA00003 B internal scaffoldin 22.4 1.2E+02 0.0027 24.8 3.6 36 191-230 41-76 (120)
No 1
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.6e-72 Score=512.91 Aligned_cols=213 Identities=68% Similarity=1.304 Sum_probs=197.3
Q ss_pred cccccCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCC
Q 024621 52 VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (265)
Q Consensus 52 ~~~~~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l 131 (265)
++.++.+++++|++|||+.++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|++
T Consensus 51 ~~~~~~~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~ 130 (267)
T PLN00098 51 VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI 130 (267)
T ss_pred cccccccCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCcccccCccccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChH
Q 024621 132 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 211 (265)
Q Consensus 132 ~~~~w~~ag~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e 211 (265)
....|+++|..+|+.++.+++++|+++||++|.+||+++.++|+++.++.+++...+..|.+||||++||||||.++|+|
T Consensus 131 ~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~ 210 (267)
T PLN00098 131 ENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPE 210 (267)
T ss_pred cccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHH
Confidence 87789999988888888889999999999999999999999999888777765544445668999999999999877999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 212 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 212 ~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
+++++|++||||||||||||+||++|+.+||++|++||.+||+||+|||||++
T Consensus 211 ~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~ 263 (267)
T PLN00098 211 PVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSA 263 (267)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhh
Confidence 99999999999999999999999999999999999999999999999999985
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1.1e-70 Score=496.91 Aligned_cols=203 Identities=52% Similarity=1.034 Sum_probs=187.8
Q ss_pred cCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCc
Q 024621 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS 135 (265)
Q Consensus 56 ~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~ 135 (265)
+.++.++|++|||+.++|+||||++|||||||||||++|+++++|+|++||+||||||||++|+++||++++.|++..+.
T Consensus 46 ~~~~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~ 125 (250)
T PLN00101 46 SFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ 125 (250)
T ss_pred cccccccccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999887788
Q ss_pred ccccCccccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHH
Q 024621 136 WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 215 (265)
Q Consensus 136 w~~ag~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~ 215 (265)
|+++|...|+....+++++|+++||++|.+||+++.+||+++.++.|....+...|.+||||. ||||||++ + ++
T Consensus 126 w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~-FDPLgl~~-~----~~ 199 (250)
T PLN00101 126 WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAP-T----EE 199 (250)
T ss_pred cccccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCc-cCccCCCc-c----HH
Confidence 999998888888888999999999999999999999999998888775444455677899998 99999974 4 37
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 216 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 216 ~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
+|+||||||||||+|++||++|+++||+||++||.+||+||+||||+++
T Consensus 200 ~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~ 248 (250)
T PLN00101 200 AKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQT 248 (250)
T ss_pred HHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhh
Confidence 8999999999999999999999999999999999999999999999986
No 3
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=3.1e-70 Score=492.02 Aligned_cols=207 Identities=55% Similarity=1.043 Sum_probs=189.9
Q ss_pred ccCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCC
Q 024621 55 SAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTP 134 (265)
Q Consensus 55 ~~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~ 134 (265)
+++..+++|++|||+.++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||++++.|++..+
T Consensus 36 ~~~~~~~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p 115 (244)
T PLN00097 36 GAVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLP 115 (244)
T ss_pred eecccCCCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCC
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999988886667
Q ss_pred cccccCccc-cccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCC-CCCCCCCCCCCCcCCCCCCCCChHH
Q 024621 135 SWYTAGELE-YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEK 212 (265)
Q Consensus 135 ~w~~ag~~~-~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~-~~~d~~yPGd~gFDPLgl~~~d~e~ 212 (265)
.||+++... |+.+..+++.+|+++||++|.+||+++.+||++..+++|+.++. ...|.+|||+. ||||||. +|+++
T Consensus 116 ~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~-FDPlgl~-~d~~~ 193 (244)
T PLN00097 116 NWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGL-FDKFGWA-KDEKK 193 (244)
T ss_pred ccccCCcchhccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCC-CCccccC-CCHHH
Confidence 899999876 77777789999999999999999999999999998888876552 33567899998 9999998 59999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCccccccc
Q 024621 213 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFA 263 (265)
Q Consensus 213 ~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~ 263 (265)
++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||||.
T Consensus 194 ~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~~ 244 (244)
T PLN00097 194 AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIFG 244 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccCC
Confidence 999999999999999999999999999999999999999999999999983
No 4
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=4e-67 Score=476.97 Aligned_cols=216 Identities=44% Similarity=0.849 Sum_probs=188.8
Q ss_pred CCccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHH------HHHHhhhhhhhcccchhhhhhhhh
Q 024621 47 AGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE------TLRWNVQSEIVHCRWAMLGAAGIF 120 (265)
Q Consensus 47 ~~~~~~~~~~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~------~~~~~r~aElkHGR~AMLA~~G~~ 120 (265)
..+|+..+.+++++++|++|||+.++|+||||++|||||||||||+ |++ +.+|+|++||+||||||||++||+
T Consensus 26 ~~~~~~~~~~~~~~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~l 104 (262)
T PLN00048 26 FVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAI 104 (262)
T ss_pred eeEecccCCCCCCCCCCceecCCCCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHH
Confidence 3455555566788899999999999999999999999999999996 443 579999999999999999999999
Q ss_pred hhhhhhccCCCCCC---cccccCc------cccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCC-CC-
Q 024621 121 IPELLTKLGILNTP---SWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TG- 189 (265)
Q Consensus 121 ~~e~~~~~G~l~~~---~w~~ag~------~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~-~~- 189 (265)
+||++++.|++... .|+++|. .+|+..+.+++++|+++||++|.+|++++.+||+++.+.+++.++. .+
T Consensus 105 v~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~ 184 (262)
T PLN00048 105 APEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGS 184 (262)
T ss_pred HHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhccccc
Confidence 99999988876532 4998773 4577777788999999999999999999999999876665544332 22
Q ss_pred CCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 190 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 190 ~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
.|..||||++||||||. +|+|+++++|++|||||||||+|++||++|+++||+||++||.+||+||+||||+++
T Consensus 185 ~d~~yPG~~~fDPlGl~-~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~ 258 (262)
T PLN00048 185 GNPAYPGGPFFNPLGFG-KDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTN 258 (262)
T ss_pred cccccccccccCccccc-cchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccccccccc
Confidence 25679999999999998 489999999999999999999999999999999999999999999999999999985
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.3e-65 Score=464.62 Aligned_cols=207 Identities=49% Similarity=0.955 Sum_probs=185.1
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcc
Q 024621 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW 136 (265)
Q Consensus 57 ~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w 136 (265)
..++++|++|+|+.++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||+++..|++..+.|
T Consensus 39 ~~~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w 118 (252)
T PLN00147 39 PVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVW 118 (252)
T ss_pred ccCCCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcch
Confidence 46678999999999999999999999999999999999999999999999999999999999999999998887766789
Q ss_pred cccCcccc-ccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCC-CC-CCCCCCCCCCCCCcCCCCCCCCChHHH
Q 024621 137 YTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN-NK-LTGTDVGYPGGLWFDPLGWGSGSPEKV 213 (265)
Q Consensus 137 ~~ag~~~~-~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~-~~-~~~~d~~yPGd~gFDPLgl~~~d~e~~ 213 (265)
+++|...+ +.+.++++++|+++||++|..|+.++.+||+...+..|.. +. ..+.+++||||++||||||. +|++++
T Consensus 119 ~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~-~d~~~~ 197 (252)
T PLN00147 119 YEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLA-KDIENA 197 (252)
T ss_pred hhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccC-CCHHHH
Confidence 99886443 5566888999999999999999999999988765443322 21 23445779999999999998 599999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 214 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 214 ~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
+++|+||||||||||+||+||++|+++||+||++||.+||+||+||||+++
T Consensus 198 ~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~ 248 (252)
T PLN00147 198 HDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQT 248 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhh
Confidence 999999999999999999999999999999999999999999999999975
No 6
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=3.6e-65 Score=467.86 Aligned_cols=185 Identities=45% Similarity=0.847 Sum_probs=162.9
Q ss_pred cCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHH--------------------------------------
Q 024621 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPET-------------------------------------- 97 (265)
Q Consensus 56 ~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~-------------------------------------- 97 (265)
+.+++++|++|||+.++|+||||++|||||||||||++|||.
T Consensus 45 ~~~~~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 124 (286)
T PLN00187 45 SSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPY 124 (286)
T ss_pred ccCCCCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcc
Confidence 457899999999999999999999999999999999999986
Q ss_pred -----HHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcccccCcc------ccccc-----hhhHHHHHHHHHHH
Q 024621 98 -----LRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL------EYFTD-----TTTLFIVEMIFIGW 161 (265)
Q Consensus 98 -----~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~~ag~~------~~~~~-----~~~l~~~qi~l~g~ 161 (265)
++||||+||+||||||||++||++||++++ . .|+++|.. .|+.. .++++++|+++||+
T Consensus 125 ~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G--~----~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~ 198 (286)
T PLN00187 125 SEVFGLQRFRECELIHGRWAMLATLGALSVEALTG--V----TWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGY 198 (286)
T ss_pred hhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccC--C----cccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999853 2 47777642 23332 25678999999999
Q ss_pred HHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 024621 162 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241 (265)
Q Consensus 162 ~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vT 241 (265)
+|.+|+.+. ...+..||||++||||||. +|+|+++++|++|||||||||+|++||++|+++|
T Consensus 199 ~E~~R~~~~-----------------~~~~~~yPGg~~FDPlGl~-~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vt 260 (286)
T PLN00187 199 IEFQRNAEL-----------------DPEKRLYPGGKFFDPLGLA-ADPEKKETLQLAEIKHARLAMVAFLGFAVQAAAT 260 (286)
T ss_pred HHhhhccCC-----------------CCCCCCCCccccccccccC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 999997531 1124569999889999998 5999999999999999999999999999999999
Q ss_pred CCCchhhHHHhhcCCcccccccc
Q 024621 242 GTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 242 G~gPl~nL~~hladP~~~n~~~~ 264 (265)
|+||++||.+||+||+||||+++
T Consensus 261 g~GPi~nL~~Hladp~~~n~~~~ 283 (286)
T PLN00187 261 GKGPLNNWATHLSDPLHTTIIDT 283 (286)
T ss_pred CCChHHHHHHHhcCcccccHHHh
Confidence 99999999999999999999985
No 7
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=7e-64 Score=455.17 Aligned_cols=195 Identities=44% Similarity=0.830 Sum_probs=169.9
Q ss_pred cccCcCCCCCCCCC-CCC-CCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCC-
Q 024621 54 VSAAAADPNRPLWF-PGS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI- 130 (265)
Q Consensus 54 ~~~~~~~~~r~~~~-p~~-~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~- 130 (265)
+.+.||++||++|| |+. ++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++..|+
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~ 121 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVK 121 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcC
Confidence 35679999999999 554 799999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCcccccCc-------cccccch--------hhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCC
Q 024621 131 LNTPSWYTAGE-------LEYFTDT--------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 195 (265)
Q Consensus 131 l~~~~w~~ag~-------~~~~~~~--------~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yP 195 (265)
+..+.||++|. .+|+..+ ++++++|+++||++|.+|+.+. + + ....|+.||
T Consensus 122 ~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~--~----------~~~~d~~yP 187 (262)
T PLN00025 122 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--P--L----------GEGLDPLYP 187 (262)
T ss_pred cCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--c--c----------cccccCcCC
Confidence 56667998774 3454432 4567889999999999987641 1 1 012355799
Q ss_pred CCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 196 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 196 Gd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
||+ ||||||. +|+|+++++|++|||||||||+|++||++|+++||+||++||.+||+||+|||||++
T Consensus 188 G~~-FDPlGl~-~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~ 254 (262)
T PLN00025 188 GGS-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAY 254 (262)
T ss_pred ccc-CCccccC-CCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhh
Confidence 999 9999998 599999999999999999999999999999999999999999999999999999874
No 8
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.2e-62 Score=453.24 Aligned_cols=203 Identities=38% Similarity=0.687 Sum_probs=172.5
Q ss_pred ccccCcCCCCCCCCCCCC--CCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCC
Q 024621 53 SVSAAAADPNRPLWFPGS--TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI 130 (265)
Q Consensus 53 ~~~~~~~~~~r~~~~p~~--~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~ 130 (265)
...+.||+++|++|||.. ++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|.
T Consensus 98 ~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 98 RNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred cccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 445789999999999765 799999999999999999999999999999999999999999999999999999988765
Q ss_pred --CCCCcccccCcc-------ccccc----------hhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCC
Q 024621 131 --LNTPSWYTAGEL-------EYFTD----------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTD 191 (265)
Q Consensus 131 --l~~~~w~~ag~~-------~~~~~----------~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d 191 (265)
+..+.||++|.. +|+.. .+.++++|+++|+.+|.+|++++..++..+ .. ...|
T Consensus 178 ~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g-------~~-~PGD 249 (324)
T PLN00171 178 VHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG-------IY-LPGD 249 (324)
T ss_pred cccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc-------cc-CCCc
Confidence 345679988742 22221 234678899989889999987654332211 11 1236
Q ss_pred CCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 192 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 192 ~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
.+||||.+||||||. +|+++++++|++|||||||||+||+||++|+.+||++|++||.+||+||+||||+++
T Consensus 250 ~gYPGG~~FDPLGl~-~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~ 321 (324)
T PLN00171 250 INYPGGALFDPLGLS-KDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSS 321 (324)
T ss_pred ccCCcccCCCccccC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHH
Confidence 679999889999998 599999999999999999999999999999999999999999999999999999985
No 9
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=8.7e-62 Score=437.13 Aligned_cols=179 Identities=41% Similarity=0.794 Sum_probs=159.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcccc
Q 024621 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 138 (265)
Q Consensus 59 ~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~~ 138 (265)
...+|++|||+.++|+||||++|||||||||||++|+++++|+|++|||||||||||++|+++||+++.+ .|++
T Consensus 31 ~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P------~w~~ 104 (246)
T PLN00100 31 AARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGLP------KFWE 104 (246)
T ss_pred ccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhccc------chhh
Confidence 4568999999999999999999999999999999999999999999999999999999999999997643 5888
Q ss_pred cCccccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHH
Q 024621 139 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 218 (265)
Q Consensus 139 ag~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~ 218 (265)
+|...+..+.++++++|+++||++|.+|++++.++| +.++||+++||||||.+ +++|+
T Consensus 105 ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g----------------~~~~pg~~~FDPLGl~~------~~~K~ 162 (246)
T PLN00100 105 AGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTG----------------ESGVLSFFPFDPTGMDS------PEMKV 162 (246)
T ss_pred cchhhhccchhHHHHHHHHHHHHHhhhccccccccc----------------ccCCCCCCCCCcccccH------HHHHH
Confidence 887666556778889999999999999987653332 12468899999999962 57999
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCccccccccC
Q 024621 219 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAVS 265 (265)
Q Consensus 219 kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~ 265 (265)
|||||||||||||+||++|+++||+||++||.+|++||+||||++++
T Consensus 163 KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 163 KEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred HHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 99999999999999999999999999999999999999999999864
No 10
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=2.4e-60 Score=428.55 Aligned_cols=185 Identities=44% Similarity=0.843 Sum_probs=153.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcc--cc
Q 024621 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YT 138 (265)
Q Consensus 61 ~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w--~~ 138 (265)
++|..|+|+.++|+||||++|||||||||||++++++++|||++|||||||||||++|+++||+++....+....| +.
T Consensus 42 ~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~ 121 (243)
T PLN00099 42 TMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIP 121 (243)
T ss_pred cccccccCCCCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccC
Confidence 5788999999999999999999999999999999999999999999999999999999999999764222221111 11
Q ss_pred cCcccc------ccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHH
Q 024621 139 AGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 212 (265)
Q Consensus 139 ag~~~~------~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~ 212 (265)
.|...| |...++++++|+++||++|.+|+... ...+..|||| .||||||. +|+++
T Consensus 122 ~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-----------------~~~~~~yPGd-~FDPlGl~-kd~~~ 182 (243)
T PLN00099 122 GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-----------------DPEKKKYPGG-AFDPLGYS-KDPKK 182 (243)
T ss_pred cchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-----------------CCCCCcCCCC-cCCccccc-CCHHH
Confidence 122222 22346788899999999998875320 0113469999 59999998 59999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhh-hhcCCCchhhHHHhhcCCcccccccc
Q 024621 213 VKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 213 ~~~~k~kEIkNGRLAMlA~~G~~~Q~-~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
++++|+|||||||||||||+||++|+ ++||++|++||.+||+||+||||++.
T Consensus 183 ~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~ 235 (243)
T PLN00099 183 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 235 (243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeee
Confidence 99999999999999999999999998 67999999999999999999999863
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.9e-56 Score=404.56 Aligned_cols=190 Identities=39% Similarity=0.791 Sum_probs=162.4
Q ss_pred cccCcCCCCCCCCCCCCC------CCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhc
Q 024621 54 VSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK 127 (265)
Q Consensus 54 ~~~~~~~~~r~~~~p~~~------~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~ 127 (265)
.++.....+|..|+|+.. +|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++.
T Consensus 42 ~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g 121 (255)
T PLN00170 42 LVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121 (255)
T ss_pred EEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC
Confidence 334445578999999874 79999999999999999999999999999999999999999999999999999864
Q ss_pred cCCCCCCcccccCcccccc---chhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCC------CCCCCCCCCCCC
Q 024621 128 LGILNTPSWYTAGELEYFT---DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK------LTGTDVGYPGGL 198 (265)
Q Consensus 128 ~G~l~~~~w~~ag~~~~~~---~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~------~~~~d~~yPGd~ 198 (265)
. .||++|...++. ...+++.+|+++||++|.+||+++.+||++..++.++..+ ....+.+|||+.
T Consensus 122 ~------~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~ 195 (255)
T PLN00170 122 I------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGK 195 (255)
T ss_pred C------ChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCc
Confidence 2 589988643222 1356888999999999999999999999988777665432 123356899998
Q ss_pred CcCCCCCCCC--------ChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHH
Q 024621 199 WFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 250 (265)
Q Consensus 199 gFDPLgl~~~--------d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~ 250 (265)
.||||||.++ |+|+++++|++|||||||||+|++||++|+ .||++||+||.
T Consensus 196 ~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 196 FFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred ccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 8999999852 899999999999999999999999999999 79999999984
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=312.20 Aligned_cols=163 Identities=29% Similarity=0.374 Sum_probs=126.7
Q ss_pred CCCCCCCCCCCCCCCCCcCcccCCCCC-CHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcccccCc--cc
Q 024621 67 FPGSTPPEWLDGSLPGDFGFDPLGLGS-DPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE--LE 143 (265)
Q Consensus 67 ~p~~~~p~~l~G~~pGd~gfDPlGl~~-d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~~ag~--~~ 143 (265)
.|+.+.|+.|||+ .||++||||||++ ++++++|+|++||||||+||||++|+++||+++.+|.+. ++.... ..
T Consensus 41 ~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~---~~~~~p~~~~ 116 (209)
T PLN00089 41 IGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY---SFAAIPKTID 116 (209)
T ss_pred cccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc---cccccccHHH
Confidence 5777888899999 9999999999985 678899999999999999999999999999998887542 111110 11
Q ss_pred cccchhhH-HHHHHH-HHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHH
Q 024621 144 YFTDTTTL-FIVEMI-FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 221 (265)
Q Consensus 144 ~~~~~~~l-~~~qi~-l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEI 221 (265)
.+...+.. .++|++ +||++|..... +.... ..++.+||||++||||||.++|+++++++|++||
T Consensus 117 a~~~~~~~g~~~Qi~~~ig~~E~~~~~----~~~~~----------~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El 182 (209)
T PLN00089 117 AHDALLKSGAMIQIFAWIGFVDLAVSA----PAAAA----------AAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKEL 182 (209)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHhh----ccccc----------cccCCCCCCCcCccccccCCCCHHHHHHHHHHHH
Confidence 12222322 357875 79999964221 11110 0112368999999999997789999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhcCCCchh
Q 024621 222 KNGRLAMLAVMGAWFQHIYTGTGPID 247 (265)
Q Consensus 222 kNGRLAMlA~~G~~~Q~~vTG~gPl~ 247 (265)
||||||||||+||++|+++||+++++
T Consensus 183 ~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 183 KNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999998763
No 13
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=8.5e-43 Score=294.48 Aligned_cols=151 Identities=44% Similarity=0.725 Sum_probs=122.1
Q ss_pred CCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCC----CCCCcccccCccccccc
Q 024621 72 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI----LNTPSWYTAGELEYFTD 147 (265)
Q Consensus 72 ~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~----l~~~~w~~ag~~~~~~~ 147 (265)
+|+||||+++|||||||+||++++ +++|+|++||||||+||||++|++++|+++..+. ...+.|.+++. + .
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~---~-~ 75 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG---I-P 75 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS---S-S
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh---h-h
Confidence 699999999999999999999877 9999999999999999999999999999876432 33345766442 1 2
Q ss_pred hhhHHHHH-HHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhh
Q 024621 148 TTTLFIVE-MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 226 (265)
Q Consensus 148 ~~~l~~~q-i~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRL 226 (265)
.+..+++| +++||++|.++.++...++... ..+..||||++|||||+. +|+++++++|++|||||||
T Consensus 76 ~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~-----------~~~~~~pG~~~~dplgl~-~~~~~~~~~~~~El~NGRl 143 (156)
T PF00504_consen 76 VPAAGWAQILLFIGALEPWRQQGVPEPGEGG-----------GKDGRYPGDLGFDPLGLA-KDPEEKEFMQLAELKNGRL 143 (156)
T ss_dssp SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS-----------SSSSSSSSSSSSSTSSTS-SSCHSHHCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhHhhhhhcccccCCcccc-----------cccccCccccccchhhhh-hhhhhhHHHHHHHHHHHHH
Confidence 56666655 4689999999887644332211 234569999999999998 7999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 024621 227 AMLAVMGAWFQHI 239 (265)
Q Consensus 227 AMlA~~G~~~Q~~ 239 (265)
|||||+|+++|+.
T Consensus 144 AMla~~g~~~~e~ 156 (156)
T PF00504_consen 144 AMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999973
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=5.3e-36 Score=264.45 Aligned_cols=144 Identities=26% Similarity=0.378 Sum_probs=109.1
Q ss_pred cccCCCC--CCHHHHHHhhhhhhhcccchhhhhhhhhhhhh-hhccCCCCC-Cccccc--CccccccchhhHHHHHH-HH
Q 024621 86 FDPLGLG--SDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL-LTKLGILNT-PSWYTA--GELEYFTDTTTLFIVEM-IF 158 (265)
Q Consensus 86 fDPlGl~--~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~-~~~~G~l~~-~~w~~a--g~~~~~~~~~~l~~~qi-~l 158 (265)
|||+||+ .|+++++|+|++|||||||||||++|+++||+ ++.+|.+.. ...+.. .....+..++..+++|| ++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ 126 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAF 126 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHH
Confidence 9999997 47899999999999999999999999999997 566665421 112221 11123455677888997 57
Q ss_pred HHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcC--CCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 024621 159 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD--PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 236 (265)
Q Consensus 159 ~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFD--PLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~ 236 (265)
||++|..++.+.. | +..+|||+.++ +|||.+.|+|+++++|++||||||||||||+||++
T Consensus 127 ig~~E~~~~~~~~--~----------------~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~ 188 (202)
T PLN00120 127 IGFLELAVMKDIT--G----------------EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188 (202)
T ss_pred HHHHHHHhhcccc--c----------------CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987654310 0 12467765322 55665558999999999999999999999999999
Q ss_pred hhhhcCCCchh
Q 024621 237 QHIYTGTGPID 247 (265)
Q Consensus 237 Q~~vTG~gPl~ 247 (265)
|+.++|+.|+-
T Consensus 189 qe~l~g~~~~~ 199 (202)
T PLN00120 189 HEQLGVELPII 199 (202)
T ss_pred HHHccCCCcCC
Confidence 99999998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.62 E-value=4.9e-16 Score=142.47 Aligned_cols=57 Identities=40% Similarity=0.609 Sum_probs=52.1
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhh
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 248 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~n 248 (265)
|..+|||++||||||. +|+++++++|.+||||||+||||++|+++|+++++.+++++
T Consensus 76 dG~~pGD~GFDPlgl~-~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLG-SDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccC-CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3358999999999998 58999999999999999999999999999999999887764
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.60 E-value=8.9e-16 Score=139.60 Aligned_cols=55 Identities=40% Similarity=0.641 Sum_probs=51.4
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCch
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 246 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl 246 (265)
|..+|||++||||||. +|+++++++|++||+||||||||++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~-~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLA-EDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 3458999999999998 599999999999999999999999999999999999876
No 17
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.56 E-value=3.9e-15 Score=135.61 Aligned_cols=74 Identities=35% Similarity=0.580 Sum_probs=60.3
Q ss_pred hhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCC
Q 024621 164 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 243 (265)
Q Consensus 164 ~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~ 243 (265)
-.+|.+..++|+....|.+ -|..+|||++||||+|. +|+|+++++|.+||+|||+||||++|+++|+++||.
T Consensus 51 ~k~w~p~~~~~~~~~~P~~-------l~g~~PGd~GFDPlgl~-~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~ 122 (255)
T PLN00170 51 KKSWIPAVKGGGNLVDPEW-------LDGSLPGDYGFDPLGLG-KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122 (255)
T ss_pred CccccCCCCCCcccCCccc-------ccccCCCCCCcCccccC-CCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCC
Confidence 3456666666665544432 24458999999999998 599999999999999999999999999999999987
Q ss_pred Cc
Q 024621 244 GP 245 (265)
Q Consensus 244 gP 245 (265)
..
T Consensus 123 ~w 124 (255)
T PLN00170 123 PW 124 (255)
T ss_pred Ch
Confidence 43
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.52 E-value=4.7e-15 Score=135.07 Aligned_cols=60 Identities=33% Similarity=0.438 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCC
Q 024621 73 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (265)
Q Consensus 73 p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~ 132 (265)
+..+++..|||++|||+||++|++++++++.+||||||+||+|++|+++|+++++.|++.
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~ 231 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPID 231 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHH
Confidence 455667799999999999999999999999999999999999999999999999877643
No 19
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.50 E-value=8.6e-15 Score=134.09 Aligned_cols=55 Identities=35% Similarity=0.571 Sum_probs=50.9
Q ss_pred CCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCC
Q 024621 77 DGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (265)
Q Consensus 77 ~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l 131 (265)
|..+|||++|||+||++|+|+++++|.+|||||||||+|++||++|+++++.|.+
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 3459999999999999999999999999999999999999999999999887754
No 20
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.49 E-value=2.6e-14 Score=133.76 Aligned_cols=54 Identities=30% Similarity=0.390 Sum_probs=49.2
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCc
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 245 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 245 (265)
|..+|||+|||||||. +|+++++++|.+||||||+||||++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~-~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLG-KDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccc-cCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 4468999999999998 49999999999999999999999999999999886653
No 21
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.48 E-value=1.8e-14 Score=128.26 Aligned_cols=54 Identities=33% Similarity=0.505 Sum_probs=49.8
Q ss_pred CCCCCCcCcccCCC-CCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCC
Q 024621 78 GSLPGDFGFDPLGL-GSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (265)
Q Consensus 78 G~~pGd~gfDPlGl-~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l 131 (265)
+..||||||||+|| .+|+++++++|.+||+|||+||+|++|+++||++++.|++
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999999999 4689999999999999999999999999999999887764
No 22
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.48 E-value=3.6e-14 Score=128.69 Aligned_cols=54 Identities=33% Similarity=0.479 Sum_probs=49.9
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCc
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 245 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 245 (265)
|...|||++||||||. +|+|+++++|.+||+|||+||||++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~-~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLG-ADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccC-cCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 4458999999999998 59999999999999999999999999999999998764
No 23
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.47 E-value=4.8e-14 Score=129.07 Aligned_cols=53 Identities=26% Similarity=0.460 Sum_probs=48.6
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCC
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 244 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~g 244 (265)
|..+|||+|||||||. +|+++++++|..||||||+||||++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls-~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLS-ADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccc-cCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 3358999999999998 5999999999999999999999999999999998754
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.45 E-value=6.9e-14 Score=126.85 Aligned_cols=50 Identities=38% Similarity=0.558 Sum_probs=46.7
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vT 241 (265)
|..+|||+|||||||. +|+|+++++|.+||||||+||||++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~-~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLG-ANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccC-CCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 5569999999999998 5999999999999999999999999999999874
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.43 E-value=4.2e-14 Score=130.78 Aligned_cols=55 Identities=40% Similarity=0.503 Sum_probs=51.0
Q ss_pred CCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCC
Q 024621 78 GSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (265)
Q Consensus 78 G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~ 132 (265)
..+|||++|||+||++|+++++++|.+|||||||||+|++||++|+++++.|.+.
T Consensus 212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~ 266 (286)
T PLN00187 212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 266 (286)
T ss_pred CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHH
Confidence 3489999999999999999999999999999999999999999999999887654
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.40 E-value=2.2e-13 Score=123.64 Aligned_cols=51 Identities=35% Similarity=0.505 Sum_probs=47.0
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcC
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG 242 (265)
|..+|||+|||||+|. +++++++++|.+||||||.||||++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls-~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLG-EVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccc-cCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 5568999999999998 48999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.33 E-value=1.5e-12 Score=109.97 Aligned_cols=49 Identities=47% Similarity=0.693 Sum_probs=45.3
Q ss_pred CCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCC
Q 024621 193 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 243 (265)
Q Consensus 193 ~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~ 243 (265)
.++|+++||||||.+ ++ .++++|..||||||+||||++|++++++.++.
T Consensus 8 ~~~~~~gfDPlgl~~-~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 8 SVPGDYGFDPLGLSS-DP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTTSTSSSTTTTTT-SH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCChhhccc-ch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 489999999999994 66 89999999999999999999999999999884
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.07 E-value=5.9e-11 Score=105.32 Aligned_cols=46 Identities=33% Similarity=0.474 Sum_probs=39.6
Q ss_pred CCCCCCc-------CcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhc
Q 024621 78 GSLPGDF-------GFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK 127 (265)
Q Consensus 78 G~~pGd~-------gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~ 127 (265)
++.|||| ||||+ |+++.+++|.+||||||+||+|++|+++||++.+
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5789954 55554 7899999999999999999999999999999765
No 29
>PHA02337 putative high light inducible protein
Probab=98.22 E-value=1.1e-06 Score=57.34 Aligned_cols=28 Identities=36% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhcCCCc
Q 024621 218 TKEIKNGRLAMLAVMGAWFQHIYTGTGP 245 (265)
Q Consensus 218 ~kEIkNGRLAMlA~~G~~~Q~~vTG~gP 245 (265)
..|+-||||||++|+..+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999999974
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.10 E-value=2.2e-06 Score=74.28 Aligned_cols=47 Identities=34% Similarity=0.469 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc-CCCchhhHHHhhcCCc
Q 024621 211 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYT-GTGPIDNLIAHLADPG 257 (265)
Q Consensus 211 e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vT-G~gPl~nL~~hladP~ 257 (265)
...++.|..|+.|||||||+|+--++-+++| |+||+.||-..-.-|.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 3466788899999999999999999999999 9999999876655554
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.66 E-value=3.1e-05 Score=69.94 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=32.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHh
Q 024621 217 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAH 252 (265)
Q Consensus 217 k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~h 252 (265)
...|+-|||+|||||+..++-+.+||+|.++++...
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 458999999999999999999999999999998654
No 32
>PHA02337 putative high light inducible protein
Probab=97.35 E-value=6.9e-05 Score=48.89 Aligned_cols=29 Identities=24% Similarity=0.108 Sum_probs=26.3
Q ss_pred hhhhhhcccchhhhhhhhhhhhhhhccCC
Q 024621 102 VQSEIVHCRWAMLGAAGIFIPELLTKLGI 130 (265)
Q Consensus 102 r~aElkHGR~AMLA~~G~~~~e~~~~~G~ 130 (265)
..+|..|||+||++++-.++.|++++.++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999988765
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.08 E-value=0.0021 Score=58.34 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=28.6
Q ss_pred hhhhhhhcccchhhhhhhhhhhhhhhccCCCC
Q 024621 101 NVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (265)
Q Consensus 101 ~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~ 132 (265)
+.++|+.|||+||+|++-.++.|++++.|++.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~ 190 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVD 190 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHH
Confidence 35799999999999999999999999888753
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=95.13 E-value=0.017 Score=50.49 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHhhhhhhhcccchhhhhhhhhhhhhhh-ccCCCC
Q 024621 95 PETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-KLGILN 132 (265)
Q Consensus 95 ~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~-~~G~l~ 132 (265)
+.+.+..+..|+.+||+||++++--++.|+++ +.|++.
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~ 167 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLE 167 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 45677888899999999999999999999999 888754
No 35
>PLN02449 ferrochelatase
Probab=55.58 E-value=8.3 Score=38.90 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhhhcCCCch
Q 024621 226 LAMLAVMGAWFQHIYTGTGPI 246 (265)
Q Consensus 226 LAMlA~~G~~~Q~~vTG~gPl 246 (265)
+||+||+.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 36
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=48.57 E-value=22 Score=34.52 Aligned_cols=51 Identities=27% Similarity=0.353 Sum_probs=36.0
Q ss_pred CCcCccc-CC----CCCCHHHHHHhhhhhhhccc------chhhhhhhhhhhhhhhccCCCCC
Q 024621 82 GDFGFDP-LG----LGSDPETLRWNVQSEIVHCR------WAMLGAAGIFIPELLTKLGILNT 133 (265)
Q Consensus 82 Gd~gfDP-lG----l~~d~~~~~~~r~aElkHGR------~AMLA~~G~~~~e~~~~~G~l~~ 133 (265)
.||||-= |. .-+|.-.-+|||.-||--|. +.|.| +||++.|++++..++++
T Consensus 143 CDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWA-iGCv~aEl~~G~pL~PG 204 (396)
T KOG0593|consen 143 CDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWA-IGCVFAELLTGEPLWPG 204 (396)
T ss_pred ccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchh-hhHHHHHHhcCCcCCCC
Confidence 6777732 11 12356677999999999995 55554 69999999987655443
No 37
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.11 E-value=26 Score=35.35 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=8.9
Q ss_pred Cccccccchhhhcc
Q 024621 1 MASVCASPAVAAIS 14 (265)
Q Consensus 1 ~~~~~~s~~~~~~~ 14 (265)
||..|+.+++++.+
T Consensus 1 Ma~kc~a~~i~a~~ 14 (630)
T KOG0742|consen 1 MAQKCAAGSISALA 14 (630)
T ss_pred CchhHHHHHHHHHH
Confidence 67777766665543
No 38
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=26.54 E-value=39 Score=32.19 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=30.0
Q ss_pred HHHHhhhhhhhccc------chhhhhhhhhhhhhhhccCCCCCCc
Q 024621 97 TLRWNVQSEIVHCR------WAMLGAAGIFIPELLTKLGILNTPS 135 (265)
Q Consensus 97 ~~~~~r~aElkHGR------~AMLA~~G~~~~e~~~~~G~l~~~~ 135 (265)
--+|||.-||--|- +.|.| +||++.|++....++++.+
T Consensus 163 ~TRWYRAPELLfGsr~Yg~~VDmWa-vGCI~AELllr~P~fpG~s 206 (318)
T KOG0659|consen 163 VTRWYRAPELLFGSRQYGTGVDMWA-VGCIFAELLLRVPFFPGDS 206 (318)
T ss_pred eeeeccChHHhccchhcCCcchhhh-HHHHHHHHHccCCCCCCCc
Confidence 34899999988775 78876 6999999988776666543
No 39
>PHA00649 hypothetical protein
Probab=22.86 E-value=1.6e+02 Score=22.44 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=20.2
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhh-------HHHHHHHHHHhh
Q 024621 203 LGWGSGSPEKVKELRTKEIKNGRL-------AMLAVMGAWFQH 238 (265)
Q Consensus 203 Lgl~~~d~e~~~~~k~kEIkNGRL-------AMlA~~G~~~Q~ 238 (265)
||...++|++.++.|. .+.+||- .||++.|+++-.
T Consensus 26 LGVD~~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~ 67 (83)
T PHA00649 26 LGVDVDVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVA 67 (83)
T ss_pred HcCCCCCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3333467777777663 4555542 357777766543
No 40
>PHA00003 B internal scaffolding protein
Probab=22.45 E-value=1.2e+02 Score=24.79 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=26.1
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHH
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLA 230 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA 230 (265)
++.+|-++-|||-. ..-+.++.|..||.+||-+.-=
T Consensus 41 ~~t~p~gLRrdpvq----~d~EaERqkr~~iEagk~~c~R 76 (120)
T PHA00003 41 NGTDPSGLRRDPVQ----QDLEAERQKRADIEAGKAICAR 76 (120)
T ss_pred CCCCccccccCccc----chHHHHHHHHHHHHHHHHHHHH
Confidence 34588888899863 3334578888999999986543
Done!