Query 024621
Match_columns 265
No_of_seqs 239 out of 1253
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 4.3E-74 1.5E-78 523.5 2.0 261 1-264 1-265 (269)
2 2wsc_4 Chlorophyll A-B binding 100.0 1.5E-67 5.1E-72 477.0 0.6 206 52-264 41-247 (251)
3 2wsc_3 LHCA3, type II chloroph 100.0 1.9E-66 6.3E-71 474.8 5.3 215 48-264 41-272 (276)
4 2bhw_A Chlorophyll A-B binding 100.0 7E-63 2.4E-67 442.3 18.3 200 49-264 7-224 (232)
5 3pl9_A Chlorophyll A-B binding 100.0 1.1E-63 3.7E-68 448.1 10.0 182 58-264 6-241 (243)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.4E-57 4.8E-62 409.4 3.9 184 62-264 44-236 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 7.2E-14 2.4E-18 124.9 6.5 51 191-242 37-87 (232)
8 3pl9_A Chlorophyll A-B binding 99.4 2.6E-14 8.9E-19 128.2 1.8 52 79-131 172-223 (243)
9 2wsc_4 Chlorophyll A-B binding 99.4 8.1E-15 2.8E-19 132.4 -1.6 53 193-246 69-121 (251)
10 2wsc_3 LHCA3, type II chloroph 99.4 2.9E-14 9.9E-19 130.3 1.2 56 77-132 200-255 (276)
11 2wsc_2 LHCA2, type II chloroph 99.4 6E-14 2.1E-18 127.8 1.5 56 77-132 192-248 (269)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 6.4E-13 2.2E-17 119.3 0.8 55 77-132 164-219 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 22.3 38 0.0013 19.4 1.3 15 95-109 6-20 (26)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=4.3e-74 Score=523.52 Aligned_cols=261 Identities=81% Similarity=1.421 Sum_probs=159.4
Q ss_pred CccccccchhhhccCCC--cccccccccccccccccCccccccccCCCCCc-cccccccCcCCCCCCCCCCCCCCCCCCC
Q 024621 1 MASVCASPAVAAISSPS--SQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLWFPGSTPPEWLD 77 (265)
Q Consensus 1 ~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~p~~~~p~~l~ 77 (265)
||++|+|+++++++.++ .++....++++++ |+ +++++.++.++...+ ++.++++++|++||++|||+.++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~wlpg~~~P~~L~ 78 (269)
T 2wsc_2 1 MASACASSAIAAVAISTPSSQKNGSPSGTSKA-FL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLD 78 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHhhHHHHHhhcCccccccccccccchhh-cc-ccccccccccccccccCCcceeecccCCCcccccCCCCCccccc
Confidence 78999998887765443 3445566777777 77 666665554432222 4555777889999999999999999999
Q ss_pred CCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcccccCccccccchhhHHHHHHH
Q 024621 78 GSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI 157 (265)
Q Consensus 78 G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~~ag~~~~~~~~~~l~~~qi~ 157 (265)
|++|||||||||||++|+|+++|||++|||||||||||++|+++||++++.|++..+.|+++|..++|.++++++++|++
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~ 158 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELV 158 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTT
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999898877789999988889888899999999
Q ss_pred HHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 024621 158 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 237 (265)
Q Consensus 158 l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q 237 (265)
+||++|.+|++++.+||+++.++.|........|.+||||++||||||.+.|+|+++++|.+||||||||||||+|+++|
T Consensus 159 liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~ 238 (269)
T 2wsc_2 159 FIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238 (269)
T ss_dssp HHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred HHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999998888886655455677899999999999987788889999999999999999999999999
Q ss_pred hhhcCCCchhhHH-HhhcCCcccccccc
Q 024621 238 HIYTGTGPIDNLI-AHLADPGHATVFAV 264 (265)
Q Consensus 238 ~~vTG~gPl~nL~-~hladP~~~n~~~~ 264 (265)
+++||+||++||. +||+|| |||||++
T Consensus 239 ~~~tg~g~l~~l~~~HladP-~~n~~~~ 265 (269)
T 2wsc_2 239 HIYTGTGPIDNLFAAHLADP-HATIFAA 265 (269)
T ss_dssp HHHTTTCSSCCCSCCCCCCS-CCCCCSS
T ss_pred HHhcCCChHHHHHHHHhcCc-ccchhhh
Confidence 9999999999999 999999 9999986
No 2
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=1.5e-67 Score=476.96 Aligned_cols=206 Identities=52% Similarity=0.999 Sum_probs=153.1
Q ss_pred cccccCcCCC-CCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCC
Q 024621 52 VSVSAAAADP-NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI 130 (265)
Q Consensus 52 ~~~~~~~~~~-~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~ 130 (265)
.+++..+|++ ||++|||+.++|+||||++|||||||||||++|+|+++|+|++|||||||||||++|++++|++++.|+
T Consensus 41 ~~~~~~~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~ 120 (251)
T 2wsc_4 41 CSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120 (251)
T ss_dssp ----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCS
T ss_pred ccccccccCcchhhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc
Confidence 3455668998 899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccCccccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCh
Q 024621 131 LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 210 (265)
Q Consensus 131 l~~~~w~~ag~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~ 210 (265)
+..+.|+++|..+||.++++++++|+++||++|.+|++++.+||+++.++.|...+.+..|.+||||+ ||||++.+
T Consensus 121 ~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~-FDPLgl~~--- 196 (251)
T 2wsc_4 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP--- 196 (251)
T ss_dssp SCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCT-TCCCCCCS---
T ss_pred cCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCc-cCccchhH---
Confidence 87778999998888888888889999999999999999999999998888876655444456799999 99999974
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 211 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 211 e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
++++|+|||||||| ||||+||++|+++||++|++||.+||+||+||||+++
T Consensus 197 --~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~ 247 (251)
T 2wsc_4 197 --TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 247 (251)
T ss_dssp --SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC-
T ss_pred --HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhh
Confidence 56899999999999 9999999999999999999999999999999999986
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.9e-66 Score=474.78 Aligned_cols=215 Identities=44% Similarity=0.874 Sum_probs=130.6
Q ss_pred CccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHH------HHhhhhhhhcccchhhhhhhhhh
Q 024621 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFI 121 (265)
Q Consensus 48 ~~~~~~~~~~~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~------~~~r~aElkHGR~AMLA~~G~~~ 121 (265)
.+|++...+++|++||++|||+.++|+||||++||||||||||| +|++++ +|+|++|||||||||||++|+++
T Consensus 41 ~~~~~~~~~~~~g~~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~ 119 (276)
T 2wsc_3 41 LVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIA 119 (276)
T ss_dssp ---------------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTS
T ss_pred eEecccCCccccCCCccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHH
Confidence 44554555667999999999999999999999999999999999 789999 99999999999999999999999
Q ss_pred hhhhhccCCCC--CC-cccc------cCccccccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCC--CCCC
Q 024621 122 PELLTKLGILN--TP-SWYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK--LTGT 190 (265)
Q Consensus 122 ~e~~~~~G~l~--~~-~w~~------ag~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~--~~~~ 190 (265)
+|++++.|++. .+ .|++ +|..+||.+..+++++|+++||++|.+|++++.+||+++.++.|+.++ ....
T Consensus 120 ~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 120 PEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred HHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 99999888763 23 3888 455677888888999999999999999999999999988888775433 2345
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
|..||||++||||||.+ |+++++++|.+||||||||||||+|+++|+++||++|++||.+||+||+||||+++
T Consensus 200 d~~yPG~~~fDPlgl~~-~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~ 272 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGK-DEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTS 272 (276)
T ss_dssp SCTTTSSSSCCCCCCSS-SCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----------------
T ss_pred cccCCCcccccchhccc-ccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhh
Confidence 66899999999999985 77779999999999999999999999999999999999999999999999999986
No 4
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=7e-63 Score=442.28 Aligned_cols=200 Identities=41% Similarity=0.778 Sum_probs=170.4
Q ss_pred ccccccccCcCCCCCCCCCCC--CCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhh
Q 024621 49 TRSVSVSAAAADPNRPLWFPG--STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126 (265)
Q Consensus 49 ~~~~~~~~~~~~~~r~~~~p~--~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~ 126 (265)
.|..++.+.||++||++||+. .++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++
T Consensus 7 ~~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~ 86 (232)
T 2bhw_A 7 KKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLS 86 (232)
T ss_dssp ---CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence 344455678999999999974 599999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CCCCcccccCcc-------cccc--------chhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCC
Q 024621 127 KLGI-LNTPSWYTAGEL-------EYFT--------DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 190 (265)
Q Consensus 127 ~~G~-l~~~~w~~ag~~-------~~~~--------~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~ 190 (265)
..|+ +..+.|+++|.. +|+. ....++++|+++||++|.+|+++ |..+ ...
T Consensus 87 ~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g----------~~~ 152 (232)
T 2bhw_A 87 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLG----------EVV 152 (232)
T ss_dssp TTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE----ETTE----------ECS
T ss_pred cCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----Cccc----------ccc
Confidence 8886 566678887642 1221 12356778999999999998864 1111 112
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhhHHHhhcCCcccccccc
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
|..||||+ ||||||. +|+|+++++|.+||||||||||||+|+++|+.+||++|++||.+||+||+||||+++
T Consensus 153 d~~~Pg~~-fdPlgl~-~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~ 224 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSY 224 (232)
T ss_dssp SSSCCCTT-SCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGG
T ss_pred cccCCCcc-cccchhc-cchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHH
Confidence 45699999 9999998 599999999999999999999999999999999999999999999999999999985
No 5
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.1e-63 Score=448.11 Aligned_cols=182 Identities=45% Similarity=0.812 Sum_probs=123.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHH----------------------------------------
Q 024621 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPET---------------------------------------- 97 (265)
Q Consensus 58 ~~~~~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~---------------------------------------- 97 (265)
+++++|++|||+.++|+||||++|||||||||||++|||.
T Consensus 6 ~~~~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (243)
T 3pl9_A 6 GFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSE 85 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccc
Confidence 5667999999999999999999999999999999999873
Q ss_pred ---HHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCcccccCc------ccccc-----chhhHHHHHHHHHHHHH
Q 024621 98 ---LRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE------LEYFT-----DTTTLFIVEMIFIGWAE 163 (265)
Q Consensus 98 ---~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~~ag~------~~~~~-----~~~~l~~~qi~l~g~~E 163 (265)
++|||++|||||||||||++||++||++++. .|+++|. ..|+. +.++++++|+++||++|
T Consensus 86 ~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~------~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E 159 (243)
T 3pl9_A 86 VFGLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIE 159 (243)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc------ccccccccccccccccccCccchhhHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998642 4776653 22332 23478899999999999
Q ss_pred hhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCC
Q 024621 164 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 243 (265)
Q Consensus 164 ~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~ 243 (265)
.+|++++ ...+..||||+ ||||||. +|+|+++++|.+||||||||||||+|+++|+++||+
T Consensus 160 ~~R~~~~-----------------~~~~~~~PG~~-FDPLGl~-~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~ 220 (243)
T 3pl9_A 160 FQRNAEL-----------------DTEKRLYPGGT-FDPLGLA-SDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGK 220 (243)
T ss_dssp HHHHSCC-----------------CTTTTTCCCGG-GCTTCTT-CSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhccc-----------------CCccccCCCcc-hhhcccc-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 9998652 01233599999 9999999 499999999999999999999999999999999999
Q ss_pred CchhhHHHhhcCCcccccccc
Q 024621 244 GPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 244 gPl~nL~~hladP~~~n~~~~ 264 (265)
||++||.+||+||+|||||++
T Consensus 221 Gpl~~l~~HladP~~~ni~~~ 241 (243)
T 3pl9_A 221 GPLNNWVTHLSDPLHTTILDR 241 (243)
T ss_dssp CHHHHHHHHHHCSGGGSTTTT
T ss_pred ChHHHHHHHhcCcchhhhhhh
Confidence 999999999999999999986
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.4e-57 Score=409.40 Aligned_cols=184 Identities=46% Similarity=0.879 Sum_probs=132.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCCCCccc--cc
Q 024621 62 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY--TA 139 (265)
Q Consensus 62 ~r~~~~p~~~~p~~l~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~~~~w~--~a 139 (265)
.|++|+|+.++|+||||++||||||||+||++|+++++|||++|||||||||||++|+++||+++..+......|. ..
T Consensus 44 m~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~ 123 (241)
T 2wsc_1 44 MAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 123 (241)
T ss_dssp -----------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSS
T ss_pred cccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCC
Confidence 5778999999999999999999999999999999999999999999999999999999999998754333222232 12
Q ss_pred Ccccc------ccchhhHHHHHHHHHHHHHhhhhhhhccCcccCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCChHHH
Q 024621 140 GELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKV 213 (265)
Q Consensus 140 g~~~~------~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~ 213 (265)
|...| |...++++++|+++||++|.+|+.+. + ..+..||||. ||||||. +|+|++
T Consensus 124 g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~---------~~~~~yPgg~-fDPlgl~-~~~~~~ 184 (241)
T 2wsc_1 124 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D---------PEKKKYPGGA-FDPLGYS-KDPKKL 184 (241)
T ss_dssp CSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S---------SCCSSSCSCC-SCSSSCS-CSSSSC
T ss_pred cchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C---------CCCCCCCCCc-ccccccc-cchhHH
Confidence 22222 34456788899999999999886420 1 1234699995 9999998 588889
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhh-hhcCCCchhhHHHhhcCCcccccccc
Q 024621 214 KELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAV 264 (265)
Q Consensus 214 ~~~k~kEIkNGRLAMlA~~G~~~Q~-~vTG~gPl~nL~~hladP~~~n~~~~ 264 (265)
+++|.+|||||||||||++|+++|+ ++||+||++||.+||+||+||||+++
T Consensus 185 ~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~ 236 (241)
T 2wsc_1 185 EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 236 (241)
T ss_dssp CCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC------
T ss_pred HHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeee
Confidence 9999999999999999999999999 68999999999999999999999985
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.45 E-value=7.2e-14 Score=124.93 Aligned_cols=51 Identities=27% Similarity=0.510 Sum_probs=47.0
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcC
Q 024621 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242 (265)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG 242 (265)
|..+|||++||||||+ +|+|.++++|..||||||+||||++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs-~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLS-ADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCC-CCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 3458999999999998 59999999999999999999999999999999764
No 8
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.42 E-value=2.6e-14 Score=128.22 Aligned_cols=52 Identities=44% Similarity=0.622 Sum_probs=49.0
Q ss_pred CCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCC
Q 024621 79 SLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (265)
Q Consensus 79 ~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l 131 (265)
..|||+ ||||||++|+++++++|.+||||||+||+|++|+++||++++.|.+
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 479999 9999999999999999999999999999999999999999987754
No 9
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.42 E-value=8.1e-15 Score=132.40 Aligned_cols=53 Identities=40% Similarity=0.678 Sum_probs=38.8
Q ss_pred CCCCCCCcCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCch
Q 024621 193 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 246 (265)
Q Consensus 193 ~yPGd~gFDPLgl~~~d~e~~~~~k~kEIkNGRLAMlA~~G~~~Q~~vTG~gPl 246 (265)
.+|||++||||||. +|+|+++++|.+||||||+||||++|+++|+++++.|++
T Consensus 69 ~~pGd~gfDPlGl~-~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLA-EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CC-CSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccC-CChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999998 599999999999999999999999999999999998876
No 10
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.41 E-value=2.9e-14 Score=130.28 Aligned_cols=56 Identities=34% Similarity=0.552 Sum_probs=47.0
Q ss_pred CCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCC
Q 024621 77 DGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (265)
Q Consensus 77 ~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~ 132 (265)
|...|||++|||+||++|+++++++|++||||||+||||++|+++||++++.|++.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 45689999999999998888899999999999999999999999999999888765
No 11
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.38 E-value=6e-14 Score=127.76 Aligned_cols=56 Identities=38% Similarity=0.606 Sum_probs=51.2
Q ss_pred CCCCCCCcCcccCCCCC-CHHHHHHhhhhhhhcccchhhhhhhhhhhhhhhccCCCC
Q 024621 77 DGSLPGDFGFDPLGLGS-DPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (265)
Q Consensus 77 ~G~~pGd~gfDPlGl~~-d~~~~~~~r~aElkHGR~AMLA~~G~~~~e~~~~~G~l~ 132 (265)
|..+|||++|||+||.+ |+++++++|.+||||||+||+|++|+++||++++.|++.
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 44689999999999974 788899999999999999999999999999999988764
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.26 E-value=6.4e-13 Score=119.32 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=49.1
Q ss_pred CCCCCCCcCcccCCCCCCHHHHHHhhhhhhhcccchhhhhhhhhhhh-hhhccCCCC
Q 024621 77 DGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE-LLTKLGILN 132 (265)
Q Consensus 77 ~G~~pGd~gfDPlGl~~d~~~~~~~r~aElkHGR~AMLA~~G~~~~e-~~~~~G~l~ 132 (265)
++.+||| +|||+||.+|+++++++|.+||||||+||+|++|+++|| ++++.|++.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~ 219 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHH
Confidence 4568998 599999999999999999999999999999999999999 477777654
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=22.32 E-value=38 Score=19.44 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhhhcc
Q 024621 95 PETLRWNVQSEIVHC 109 (265)
Q Consensus 95 ~~~~~~~r~aElkHG 109 (265)
.+.+..+|++|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999999853
Done!