Query 024622
Match_columns 265
No_of_seqs 214 out of 2078
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 11:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 99.8 1.3E-19 4.4E-24 153.5 8.9 101 111-239 97-197 (230)
2 1d2t_A Acid phosphatase; all a 99.8 2.9E-19 9.9E-24 151.4 9.7 101 111-239 109-209 (231)
3 1qi9_A Protein (vanadium bromo 99.5 7.9E-14 2.7E-18 129.8 7.4 120 113-243 377-510 (556)
4 1up8_A Vanadium-dependent brom 99.2 1E-10 3.5E-15 109.2 11.4 88 156-243 478-577 (598)
5 3bb0_A Vanadium chloroperoxida 99.1 2.2E-10 7.5E-15 108.1 10.1 125 104-234 340-511 (609)
6 2ksd_A Aerobic respiration con 20.8 96 0.0033 22.4 3.5 38 203-240 34-72 (115)
7 3arc_E Cytochrome B559 subunit 16.9 1.9E+02 0.0065 19.2 4.0 14 115-128 41-54 (83)
8 2lx0_A Membrane fusion protein 9.7 2.4E+02 0.0082 14.7 3.6 14 218-231 2-15 (32)
9 1jb0_I Photosystem 1 reaction 9.1 3.1E+02 0.011 15.5 3.0 24 63-86 8-31 (38)
10 2l2t_A Receptor tyrosine-prote 8.0 3.8E+02 0.013 15.6 3.8 27 224-250 16-42 (44)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.79 E-value=1.3e-19 Score=153.53 Aligned_cols=101 Identities=26% Similarity=0.166 Sum_probs=74.9
Q ss_pred HHHHHHhhhhCCCCCCccccccCCCCcccCCcccccccCCccccccCCCCCCChhHHHHHHHHHHHHHHHhhhcccccCC
Q 024622 111 VLTDAIKIAVGRPRPNFFWRCFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFLSLYISGKIKAFDRR 190 (265)
Q Consensus 111 ~i~~~lK~~~grpRP~~~~~c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l~~~l~~~~~~~~~~ 190 (265)
+++..+|..++|+||+.... ...|........+.++||||||++.+++.++++..+...+
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~-------------~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~------- 156 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFN-------------HSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPER------- 156 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTT-------------CCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGG-------
T ss_pred HHHHHHHHHhCCCCcCccCC-------------CCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHH-------
Confidence 78999999999999985421 0112211111246789999999999999888777653221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCCCChhHhHHHHHHHHHHHHHHH
Q 024622 191 GHVAKLCLVFLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLVVATFCY 239 (265)
Q Consensus 191 ~~~~r~~l~~~~~~~~~lv~~sRi~~g~H~~sDVl~G~~iG~~~a~~~~ 239 (265)
.. ..+.++..+|+|||++|+||++||++|+++|..++...+
T Consensus 157 ---~~-----~~~~~a~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~~~ 197 (230)
T 2ipb_A 157 ---AQ-----ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQ 197 (230)
T ss_dssp ---HH-----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HH-----HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 11 124567899999999999999999999999999987653
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.79 E-value=2.9e-19 Score=151.42 Aligned_cols=101 Identities=27% Similarity=0.211 Sum_probs=75.0
Q ss_pred HHHHHHhhhhCCCCCCccccccCCCCcccCCcccccccCCccccccCCCCCCChhHHHHHHHHHHHHHHHhhhcccccCC
Q 024622 111 VLTDAIKIAVGRPRPNFFWRCFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFLSLYISGKIKAFDRR 190 (265)
Q Consensus 111 ~i~~~lK~~~grpRP~~~~~c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l~~~l~~~~~~~~~~ 190 (265)
+++..+|..++|+||+.... +..|........+.++||||||++.+++.+.++..++..+
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~-------------~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~------- 168 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYG-------------VSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQR------- 168 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHT-------------CCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGG-------
T ss_pred HHHHHHHHHhCCCCcCccCC-------------CCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-------
Confidence 78899999999999985431 0111110011136789999999999999988877654321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCCCChhHhHHHHHHHHHHHHHHH
Q 024622 191 GHVAKLCLVFLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLVVATFCY 239 (265)
Q Consensus 191 ~~~~r~~l~~~~~~~~~lv~~sRi~~g~H~~sDVl~G~~iG~~~a~~~~ 239 (265)
+. ..+.++..+|+||||.|+||++||++|+++|..++..++
T Consensus 169 ----~~----~~~~~a~~v~~SRvylGvH~psDVlaG~~lG~~~~~~~~ 209 (231)
T 1d2t_A 169 ----QN----EILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLH 209 (231)
T ss_dssp ----HH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HH----HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 11 235677899999999999999999999999999987764
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=99.45 E-value=7.9e-14 Score=129.83 Aligned_cols=120 Identities=18% Similarity=0.061 Sum_probs=75.9
Q ss_pred HHHHhhhhCCCCCCccccccCCCCcccCCcccccccCCccccccCCCCCCChhHHHHHHHHHHHHHHHhhhc--ccccCC
Q 024622 113 TDAIKIAVGRPRPNFFWRCFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFLSLYISGKI--KAFDRR 190 (265)
Q Consensus 113 ~~~lK~~~grpRP~~~~~c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l~~~l~~~~--~~~~~~ 190 (265)
+.++|.+++|+||.... ++.... ... ..........|||||||+.+++++.++..++..+. ..+..+
T Consensus 377 ~~lLK~l~~RpRP~~~~---~~~~~L-------l~~-~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r 445 (556)
T 1qi9_A 377 AELLKRVAAINAAQNPN---NEVTYL-------LPQ-AIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDP 445 (556)
T ss_dssp HHHHHHHHHHHHHHSGG---GCCCCC-------CCB-SSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSC
T ss_pred hhHHHhhhccCCCCCCc---ccccee-------eec-ccccCCCCCCCCChHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 35899999999996311 110000 000 00000256799999999999999999887764320 000000
Q ss_pred -----chhHH-----HHHH--HHHHHHHHHHHHHHhhCCCCChhHhHHHHHHHHHHHHHHHHHhc
Q 024622 191 -----GHVAK-----LCLV--FLPLLFASLVGISRVDDYWHHWQDVFAGGLLGLVVATFCYLQFF 243 (265)
Q Consensus 191 -----~~~~r-----~~l~--~~~~~~~~lv~~sRi~~g~H~~sDVl~G~~iG~~~a~~~~~~~~ 243 (265)
....+ ..+. .....++..+|+||||.|+||++||++|+++|..++..+++...
T Consensus 446 ~~~~~~G~~r~~~~~~~l~~~~~l~~lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~~~ 510 (556)
T 1qi9_A 446 VYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQEL 510 (556)
T ss_dssp EEECTTSSSEEECCSSCCBHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeehhhHHHHHHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0011 11345788999999999999999999999999999998876553
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=99.18 E-value=1e-10 Score=109.21 Aligned_cols=88 Identities=25% Similarity=0.172 Sum_probs=63.9
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHhhhccc-----ccCCc--hhH-----HHHHHHHHHHHHHHHHHHHhhCCCCChhH
Q 024622 156 EGHKSFPSGHTSWSFAGLGFLSLYISGKIKA-----FDRRG--HVA-----KLCLVFLPLLFASLVGISRVDDYWHHWQD 223 (265)
Q Consensus 156 ~~~~SFPSGHas~a~~~~~~l~~~l~~~~~~-----~~~~~--~~~-----r~~l~~~~~~~~~lv~~sRi~~g~H~~sD 223 (265)
....|||||||+.+++.+..+..++..+... ....+ +.. ...+......++..+|+||+|.|+||++|
T Consensus 478 P~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypSD 557 (598)
T 1up8_A 478 PFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSD 557 (598)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHHH
Confidence 4679999999999999999998777654310 00000 000 00011234567889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 024622 224 VFAGGLLGLVVATFCYLQFF 243 (265)
Q Consensus 224 Vl~G~~iG~~~a~~~~~~~~ 243 (265)
|++|+.+|..++..+.+...
T Consensus 558 VlAG~~LG~aVa~~vl~~~~ 577 (598)
T 1up8_A 558 QFESLLLGEQVAIGILEEQS 577 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877653
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=99.11 E-value=2.2e-10 Score=108.06 Aligned_cols=125 Identities=16% Similarity=0.082 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCCcccc-------ccCCCCcccCCcccccccCCccccccCCCCCCChhHHHHHHHHHHH
Q 024622 104 YSVLVTGVLTDAIKIAVGRPRPNFFWR-------CFPDGIAVYDQFNNVICHGDKHVVNEGHKSFPSGHTSWSFAGLGFL 176 (265)
Q Consensus 104 ~~~~~~~~i~~~lK~~~grpRP~~~~~-------c~p~~~~~~~~~~~~~c~~~~~~~~~~~~SFPSGHas~a~~~~~~l 176 (265)
.++.-+.+.+...|..+.|+||...-+ +.|+...... .... .+.........|||||||+.+++++..+
T Consensus 340 ~A~~DA~ia~w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~---~~~~-~~~~~~tP~~pSYPSGHAt~s~A~A~vL 415 (609)
T 3bb0_A 340 VACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGA---PATN-TNDIPFKPPFPAYPSGHATFGGAVFQMV 415 (609)
T ss_dssp HHHHHHHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCB---CCTT-SSSCCBCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCchhhcccccccCCccchhhcc---cccc-cccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344445556667999999999964321 1111110000 0000 0000113577999999999999999999
Q ss_pred HHHHhhhccccc-----CC-------------------------------c----hhHHHHHHHHHHHHHHHHHHHHhhC
Q 024622 177 SLYISGKIKAFD-----RR-------------------------------G----HVAKLCLVFLPLLFASLVGISRVDD 216 (265)
Q Consensus 177 ~~~l~~~~~~~~-----~~-------------------------------~----~~~r~~l~~~~~~~~~lv~~sRi~~ 216 (265)
..++.++...|. +. + ...|.+ .....++..+|+||+|.
T Consensus 416 ~~~f~~~~~~~~~~G~d~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~--~sl~~~A~e~g~SRIY~ 493 (609)
T 3bb0_A 416 RRYYNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHF--DSAWELMFENAISRIFL 493 (609)
T ss_dssp HHHHBTTTBCCCTTSCCCCCEEEEECTTSSSSCEEESSCCCTTSCGGGSCEEECCCCEEEE--SCHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccccCccccceeecccccccccccccccccccccccccccccccccchhhH--HHHHHHHHHHhhhhhee
Confidence 888731111000 00 0 000000 01234578899999999
Q ss_pred CCCChhHhHHHHHHHHHH
Q 024622 217 YWHHWQDVFAGGLLGLVV 234 (265)
Q Consensus 217 g~H~~sDVl~G~~iG~~~ 234 (265)
|.||++||++|..+|..+
T Consensus 494 GVHypsDv~aG~~lG~~~ 511 (609)
T 3bb0_A 494 GVHWRFDAAAARDILIPT 511 (609)
T ss_dssp TSSCHHHHSCHHHHBCBC
T ss_pred eeeCHHHHHHHHHHHHhh
Confidence 999999999999999766
No 6
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=20.83 E-value=96 Score=22.38 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCCCChhHhHHHHHHHHHHH-HHHHH
Q 024622 203 LLFASLVGISRVDDYWHHWQDVFAGGLLGLVVA-TFCYL 240 (265)
Q Consensus 203 ~~~~~lv~~sRi~~g~H~~sDVl~G~~iG~~~a-~~~~~ 240 (265)
.+...=+.++-+..|.=++.|++.+.+.|.+.+ ++.|.
T Consensus 34 ~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli~aP~viYF 72 (115)
T 2ksd_A 34 LAIVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYF 72 (115)
T ss_dssp HHHHHHHHHHHHSCCCSSSSSCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 444455778889999999999999999999998 44443
No 7
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=16.85 E-value=1.9e+02 Score=19.23 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=10.8
Q ss_pred HHhhhhCCCCCCcc
Q 024622 115 AIKIAVGRPRPNFF 128 (265)
Q Consensus 115 ~lK~~~grpRP~~~ 128 (265)
+.-..+|-|||+-+
T Consensus 41 LaYdvFGtPrpneY 54 (83)
T 3arc_E 41 LAYDVFGTPRPDSY 54 (83)
T ss_dssp HHHHHHTCCCTTSS
T ss_pred cceeccCCCCcccc
Confidence 55578999999843
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=9.73 E-value=2.4e+02 Score=14.69 Aligned_cols=14 Identities=29% Similarity=0.136 Sum_probs=10.4
Q ss_pred CCChhHhHHHHHHH
Q 024622 218 WHHWQDVFAGGLLG 231 (265)
Q Consensus 218 ~H~~sDVl~G~~iG 231 (265)
.|..-+|++|.+.=
T Consensus 2 khtiweviaglval 15 (32)
T 2lx0_A 2 KHTIWEVIAGLVAL 15 (32)
T ss_dssp CSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 57888899887643
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=9.10 E-value=3.1e+02 Score=15.52 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=16.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHH
Q 024622 63 NTVPVWAVPVYAVLVPVIIFLIVY 86 (265)
Q Consensus 63 ~~i~~~~l~~~~~~~p~~~~l~~~ 86 (265)
...|....+.++++.|.+......
T Consensus 8 ~~LPsI~VPlVglvfPai~Mallf 31 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHHHHHHH
Confidence 346677777888888877665443
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.01 E-value=3.8e+02 Score=15.65 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024622 224 VFAGGLLGLVVATFCYLQFFPPPYHAE 250 (265)
Q Consensus 224 Vl~G~~iG~~~a~~~~~~~~~~~~~~~ 250 (265)
|++|.++-.+++...+.++.++-..++
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred ehHHHHHHHHHHHHHHHHhhhhhhhhc
Done!