BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024624
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDQDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ R PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPAIAKRRTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 11/150 (7%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K G+L+LN+GGP+TL DV FL LF D D++ LP +Q LA I+ PK +E
Sbjct: 4 KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP-----IQNKLAPFIAKRLTPKIQEQ 58
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRI 215
Y IGGGSP++ T +Q + + L+ P Y+G RY +P TEEA+++++RD +
Sbjct: 59 YRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGL 118
Query: 216 TRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245
R + YPQ+S STTGSS L I+RY
Sbjct: 119 ERAIAFTQYPQYSCSTTGSS---LNAIYRY 145
>pdb|1L8X|A Chain A, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1L8X|B Chain B, Crystal Structure Of Ferrochelatase From The Yeast,
Saccharomyces Cerevisiae, With Cobalt(Ii) As The
Substrate Ion
pdb|1LBQ|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
pdb|1LBQ|B Chain B, The Crystal Structure Of Saccharomyces Cerevisiae
Ferrochelatase
Length = 362
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGY 159
G++L+N+GGP + + FL+ LFAD D+I + + Q +AK I+ R PK ++ Y
Sbjct: 8 TGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKY---QKTIAKYIAKFRTPKIEKQY 64
Query: 160 AAIGGGSPLRKITDEQAQALKTALEA---KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
IGGGSP+RK ++ QA + L+ + P YV RY P T E +Q+ +D +
Sbjct: 65 REIGGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVK 124
Query: 217 RLVVLPLYPQFSISTTGSSIRVL 239
+ V YP FS STTGSSI L
Sbjct: 125 KAVAFSQYPHFSYSTTGSSINEL 147
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ +G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAMGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 107 EAVSIVLAPHFSTFSVQS 124
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAFGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 106 EAVSIVLAPHFSTFSVQS 123
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 107 EAVSIVLAPHFSTFSVQS 124
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 106 EAVSIVLAPHFSTFSVQS 123
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 106 EAVSIVLAPHFSTFSVQS 123
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 107 EAVSIVLAPHFSTFSVQS 124
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 1 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 42
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 43 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 102
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 103 EAVSIVLAPHFSTFSVQS 120
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 4 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+++ PF E+AV ++ +D IT
Sbjct: 46 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGIT 105
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 106 EAVSIVLAPHFSTFSVQS 123
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 20/138 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + K+
Sbjct: 5 KMGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPEPEMLQDL-----KDR 46
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL +IT++QA L+ L + Y+G+ + PF E+AV ++ +D IT
Sbjct: 47 YEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGIT 106
Query: 217 RLVVLPLYPQFSISTTGS 234
V + L P FS + S
Sbjct: 107 EAVSIVLAPHFSTFSVQS 124
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 20/140 (14%)
Query: 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158
K+G+L++ G P + + DI R R + P +++ + E
Sbjct: 4 KIGLLVMAYGTP-------------YKEEDIERYYTHIRRGRKPSPEMLEDL-----TER 45
Query: 159 YAAIGGGSPLRKITDEQAQALKTALEA--KNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216
Y AIGG SPL IT EQA+ L+ L + ++Y+G+++ PF E+AV+++ D I
Sbjct: 46 YRAIGGISPLATITLEQAKKLEKRLNEVQDEVEYHMYLGLKHIEPFIEDAVKEMHNDGIQ 105
Query: 217 RLVVLPLYPQFSISTTGSSI 236
+ L L P +S + S +
Sbjct: 106 DAIALVLAPHYSTFSVKSYV 125
>pdb|3U0H|A Chain A, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius.
pdb|3U0H|B Chain B, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Length = 281
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 88 EYESHAQAAED----KVGVLLLNLGGPDTLHDVQP-FLFNLFADPDIIRL-PRLFRFLQW 141
E E H AA + + G++L NLG P L+D +P FL L PD RL RL
Sbjct: 43 EAERHGDAAVEAXFQRRGLVLANLGLPLNLYDSEPVFLRELSLLPDRARLCARLG----- 97
Query: 142 PLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP 201
A+ ++ P E P+R I+ + + A+E LP+ VG+ Y P
Sbjct: 98 --ARSVTAFLWPSXDE--------EPVRYISQLARRIRQVAVEL--LPLGXRVGLEYVGP 145
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 541 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 600
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 601 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 638
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K Y + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRE 763
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 74 ICAAGVATYGENAVEYESHAQAAEDKVGVLLL-NLGGPDTLHDVQPFLFNLFADPDIIRL 132
+C A V G+ +S+ D+V LLL NLG + V+P + ++F D +
Sbjct: 666 VCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725
Query: 133 PRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRK 170
++L+ L L +A K + + + LR+
Sbjct: 726 GEFKKYLEVVLNTLQQASQAQVDKSDFDMVDYLNELRE 763
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,352,219
Number of Sequences: 62578
Number of extensions: 285018
Number of successful extensions: 759
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 26
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)