Query 024624
Match_columns 265
No_of_seqs 163 out of 1166
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 3E-49 6.4E-54 386.9 20.4 179 79-259 71-251 (485)
2 cd03411 Ferrochelatase_N Ferro 100.0 8.3E-48 1.8E-52 326.1 17.0 158 100-260 1-158 (159)
3 COG0276 HemH Protoheme ferro-l 100.0 8E-46 1.7E-50 347.1 17.3 158 96-258 2-159 (320)
4 PF00762 Ferrochelatase: Ferro 100.0 7E-46 1.5E-50 346.2 15.9 158 99-259 1-158 (316)
5 TIGR00109 hemH ferrochelatase. 100.0 3.1E-45 6.6E-50 342.0 16.9 161 96-259 2-163 (322)
6 KOG1321 Protoheme ferro-lyase 100.0 5.9E-44 1.3E-48 333.0 16.1 159 97-258 36-199 (395)
7 PRK00035 hemH ferrochelatase; 100.0 3.2E-42 7E-47 320.3 18.7 160 97-258 3-162 (333)
8 PRK12435 ferrochelatase; Provi 100.0 6.5E-38 1.4E-42 292.4 17.3 145 96-259 1-147 (311)
9 cd03409 Chelatase_Class_II Cla 99.3 1.5E-11 3.2E-16 94.8 11.4 76 166-245 13-89 (101)
10 PRK00923 sirohydrochlorin coba 98.1 1.2E-05 2.5E-10 65.4 7.9 67 162-229 7-74 (126)
11 cd03415 CbiX_CbiC Archaeal sir 97.9 0.00012 2.5E-09 61.0 10.8 66 162-229 6-72 (125)
12 cd03414 CbiX_SirB_C Sirohydroc 97.9 0.00014 3.1E-09 57.9 9.9 68 162-230 6-74 (117)
13 cd03413 CbiK_C Anaerobic cobal 97.8 7.4E-05 1.6E-09 59.9 7.6 62 162-226 6-67 (103)
14 cd03416 CbiX_SirB_N Sirohydroc 97.8 0.00024 5.2E-09 55.2 10.1 77 163-240 6-83 (101)
15 cd03412 CbiK_N Anaerobic cobal 97.7 0.0004 8.6E-09 57.3 10.3 79 163-247 7-97 (127)
16 PLN02757 sirohydrochlorine fer 97.6 0.00085 1.8E-08 57.5 11.4 70 162-232 19-89 (154)
17 cd00419 Ferrochelatase_C Ferro 97.5 0.0014 3.1E-08 54.8 10.9 92 165-259 36-135 (135)
18 PF01903 CbiX: CbiX; InterPro 97.4 0.00029 6.2E-09 55.0 5.5 57 174-231 10-67 (105)
19 PRK05782 bifunctional sirohydr 97.0 0.002 4.2E-08 61.9 7.7 66 161-228 11-77 (335)
20 COG2138 Sirohydrochlorin ferro 96.7 0.0038 8.2E-08 57.5 6.3 78 162-240 8-86 (245)
21 PRK02395 hypothetical protein; 96.2 0.0097 2.1E-07 55.0 5.9 68 162-232 7-74 (279)
22 PLN02449 ferrochelatase 95.7 0.1 2.2E-06 52.7 11.1 95 164-260 294-397 (485)
23 TIGR00109 hemH ferrochelatase. 95.7 0.095 2.1E-06 49.6 10.4 93 164-260 205-305 (322)
24 PRK00035 hemH ferrochelatase; 94.7 0.32 7E-06 45.7 10.4 89 167-260 209-307 (333)
25 PRK02395 hypothetical protein; 93.7 0.21 4.6E-06 46.2 6.9 65 163-230 142-206 (279)
26 PF06180 CbiK: Cobalt chelatas 92.9 0.25 5.5E-06 46.0 6.2 61 162-225 147-207 (262)
27 PF00762 Ferrochelatase: Ferro 92.8 0.3 6.6E-06 46.3 6.6 90 164-260 201-300 (316)
28 PF06180 CbiK: Cobalt chelatas 90.2 0.78 1.7E-05 42.8 6.3 41 200-245 57-97 (262)
29 COG0276 HemH Protoheme ferro-l 85.4 7.1 0.00015 37.7 9.7 94 164-260 201-302 (320)
30 PRK12435 ferrochelatase; Provi 84.1 9.9 0.00022 36.1 10.0 91 164-260 191-291 (311)
31 TIGR00640 acid_CoA_mut_C methy 72.6 25 0.00054 29.3 7.9 105 100-219 3-110 (132)
32 COG2108 Uncharacterized conser 71.6 28 0.00061 34.1 9.0 80 156-243 74-161 (353)
33 COG4750 LicC CTP:phosphocholin 66.5 7 0.00015 35.9 3.6 47 163-224 9-55 (231)
34 PRK04147 N-acetylneuraminate l 58.7 71 0.0015 29.5 8.9 54 188-245 72-128 (293)
35 PLN02757 sirohydrochlorine fer 56.8 26 0.00056 30.0 5.3 27 97-123 11-39 (154)
36 PF00701 DHDPS: Dihydrodipicol 55.8 1.1E+02 0.0024 28.0 9.6 54 187-244 68-124 (289)
37 PRK13111 trpA tryptophan synth 55.4 69 0.0015 29.7 8.2 105 100-221 13-124 (258)
38 COG4822 CbiK Cobalamin biosynt 55.2 39 0.00084 31.7 6.3 36 191-226 169-204 (265)
39 PF13684 Dak1_2: Dihydroxyacet 53.0 23 0.0005 33.6 4.8 45 179-224 108-152 (313)
40 PRK03620 5-dehydro-4-deoxygluc 52.3 89 0.0019 29.2 8.5 53 187-244 74-129 (303)
41 cd00408 DHDPS-like Dihydrodipi 52.2 1.1E+02 0.0023 27.8 8.8 54 188-245 65-121 (281)
42 TIGR00262 trpA tryptophan synt 51.7 76 0.0017 29.2 7.8 108 99-223 10-124 (256)
43 COG3636 Predicted transcriptio 51.1 43 0.00094 27.4 5.3 73 112-216 19-91 (100)
44 KOG1321 Protoheme ferro-lyase 50.8 49 0.0011 32.6 6.5 61 164-224 244-308 (395)
45 TIGR00539 hemN_rel putative ox 46.0 50 0.0011 31.4 5.9 54 162-219 57-115 (360)
46 TIGR03249 KdgD 5-dehydro-4-deo 45.0 1.5E+02 0.0032 27.5 8.7 53 188-245 73-128 (296)
47 TIGR00674 dapA dihydrodipicoli 44.5 1.5E+02 0.0033 27.2 8.6 52 188-243 66-120 (285)
48 cd06349 PBP1_ABC_ligand_bindin 42.3 2.1E+02 0.0045 25.9 9.2 51 170-220 146-196 (340)
49 COG4822 CbiK Cobalamin biosynt 41.7 64 0.0014 30.3 5.6 30 98-127 1-36 (265)
50 TIGR02313 HpaI-NOT-DapA 2,4-di 41.7 1.8E+02 0.0038 27.1 8.7 54 188-245 68-124 (294)
51 cd03174 DRE_TIM_metallolyase D 41.6 99 0.0021 27.3 6.8 45 179-223 120-168 (265)
52 PF08029 HisG_C: HisG, C-termi 41.4 26 0.00056 26.8 2.6 25 199-223 48-72 (75)
53 PF02645 DegV: Uncharacterised 41.4 1.1E+02 0.0025 28.0 7.3 55 199-259 61-118 (280)
54 TIGR00683 nanA N-acetylneurami 41.2 2.9E+02 0.0064 25.6 10.1 53 188-244 69-124 (290)
55 smart00729 Elp3 Elongator prot 40.6 1.3E+02 0.0029 24.4 7.0 53 173-227 136-193 (216)
56 cd06335 PBP1_ABC_ligand_bindin 40.3 1.1E+02 0.0024 28.1 7.0 52 171-222 150-201 (347)
57 PF02633 Creatininase: Creatin 40.2 2.1E+02 0.0046 25.5 8.7 80 171-259 41-139 (237)
58 cd00952 CHBPH_aldolase Trans-o 39.4 1.4E+02 0.003 28.1 7.6 55 187-245 75-132 (309)
59 PRK09426 methylmalonyl-CoA mut 38.6 1.4E+02 0.003 31.9 8.3 126 97-243 580-707 (714)
60 cd00951 KDGDH 5-dehydro-4-deox 37.3 1.4E+02 0.0031 27.6 7.3 52 188-244 68-122 (289)
61 PLN02417 dihydrodipicolinate s 36.7 1.6E+02 0.0034 27.2 7.5 64 177-244 58-124 (280)
62 PF00290 Trp_syntA: Tryptophan 35.3 67 0.0015 30.0 4.8 112 97-226 8-126 (259)
63 PF03358 FMN_red: NADPH-depend 34.9 77 0.0017 25.6 4.6 74 165-242 8-96 (152)
64 cd01828 sialate_O-acetylestera 34.6 1E+02 0.0022 25.1 5.4 22 102-123 22-44 (169)
65 cd00954 NAL N-Acetylneuraminic 34.6 2E+02 0.0044 26.4 7.9 53 188-244 69-124 (288)
66 cd06346 PBP1_ABC_ligand_bindin 34.3 1.6E+02 0.0035 26.5 7.0 55 171-226 149-203 (312)
67 PLN00061 photosystem II protei 34.1 1.2E+02 0.0025 26.6 5.7 58 114-184 90-147 (150)
68 TIGR03599 YloV DAK2 domain fus 33.5 77 0.0017 32.6 5.3 47 177-224 324-370 (530)
69 cd01545 PBP1_SalR Ligand-bindi 33.3 1.1E+02 0.0023 26.2 5.5 15 204-218 70-84 (270)
70 COG0635 HemN Coproporphyrinoge 32.8 80 0.0017 31.2 5.1 59 162-222 93-155 (416)
71 KOG3871 Cell adhesion complex 32.3 91 0.002 31.2 5.3 76 114-223 360-436 (449)
72 cd06348 PBP1_ABC_ligand_bindin 32.1 1.7E+02 0.0037 26.5 6.9 55 171-226 149-203 (344)
73 cd06267 PBP1_LacI_sugar_bindin 31.5 1.2E+02 0.0026 25.4 5.4 48 173-225 42-89 (264)
74 PRK08898 coproporphyrinogen II 31.5 1.1E+02 0.0023 29.7 5.7 55 162-220 79-138 (394)
75 PRK05799 coproporphyrinogen II 31.5 1.1E+02 0.0024 29.0 5.8 55 162-218 57-113 (374)
76 PF13472 Lipase_GDSL_2: GDSL-l 31.1 1.1E+02 0.0024 23.9 4.9 57 203-261 91-153 (179)
77 COG1208 GCD1 Nucleoside-diphos 30.3 97 0.0021 29.8 5.1 23 199-221 31-53 (358)
78 PRK11658 UDP-4-amino-4-deoxy-L 30.0 95 0.0021 29.5 5.0 67 176-242 306-376 (379)
79 cd02072 Glm_B12_BD B12 binding 29.8 1.3E+02 0.0028 25.3 5.2 82 128-219 29-113 (128)
80 PF01012 ETF: Electron transfe 29.6 3.2E+02 0.007 22.5 9.7 47 198-245 40-88 (164)
81 PRK08446 coproporphyrinogen II 29.5 1.1E+02 0.0024 29.1 5.3 52 162-219 57-113 (350)
82 cd06345 PBP1_ABC_ligand_bindin 29.4 2E+02 0.0043 26.2 6.8 52 170-221 155-206 (344)
83 cd02071 MM_CoA_mut_B12_BD meth 29.2 2.3E+02 0.005 22.6 6.5 48 168-219 59-107 (122)
84 TIGR00433 bioB biotin syntheta 28.9 1.8E+02 0.0038 26.4 6.4 10 207-216 164-173 (296)
85 PRK12652 putative monovalent c 28.5 2.4E+02 0.0052 27.5 7.5 45 199-247 99-143 (357)
86 PF08210 APOBEC_N: APOBEC-like 28.2 59 0.0013 28.7 3.1 60 157-216 72-141 (188)
87 TIGR03588 PseC UDP-4-keto-6-de 28.1 47 0.001 31.3 2.5 66 175-240 308-377 (380)
88 PRK14457 ribosomal RNA large s 28.1 5.6E+02 0.012 24.8 10.8 144 99-252 149-324 (345)
89 cd01542 PBP1_TreR_like Ligand- 28.0 1.6E+02 0.0034 25.1 5.6 13 204-216 68-80 (259)
90 cd06343 PBP1_ABC_ligand_bindin 28.0 4.7E+02 0.01 23.9 10.7 56 169-225 154-209 (362)
91 PRK11706 TDP-4-oxo-6-deoxy-D-g 27.9 1.2E+02 0.0026 28.7 5.3 66 175-241 301-372 (375)
92 PRK14455 ribosomal RNA large s 27.9 5.3E+02 0.012 24.9 9.7 144 100-253 161-332 (356)
93 PLN03194 putative disease resi 27.7 2.7E+02 0.0059 25.1 7.1 64 175-245 42-108 (187)
94 PF13458 Peripla_BP_6: Peripla 27.6 2.5E+02 0.0054 25.1 7.1 55 169-224 145-199 (343)
95 TIGR03455 HisG_C-term ATP phos 27.4 69 0.0015 25.7 3.0 25 199-223 72-96 (100)
96 cd07938 DRE_TIM_HMGL 3-hydroxy 27.3 2.9E+02 0.0064 25.5 7.6 48 174-221 114-169 (274)
97 cd06286 PBP1_CcpB_like Ligand- 27.2 1.6E+02 0.0035 25.1 5.6 19 205-223 46-64 (260)
98 cd06371 PBP1_sensory_GC_DEF_li 26.4 3.1E+02 0.0067 25.9 7.8 52 174-225 147-198 (382)
99 COG1535 EntB Isochorismate hyd 25.9 2.1E+02 0.0045 26.3 6.0 42 192-233 120-161 (218)
100 PRK03170 dihydrodipicolinate s 25.7 2.8E+02 0.0061 25.4 7.2 52 189-244 70-124 (292)
101 PF09370 TIM-br_sig_trns: TIM- 25.6 1.8E+02 0.004 27.6 5.9 65 155-223 43-117 (268)
102 PF05036 SPOR: Sporulation rel 25.3 2.1E+02 0.0045 19.9 5.0 31 190-220 44-75 (76)
103 cd00860 ThrRS_anticodon ThrRS 25.0 2.7E+02 0.0058 20.1 6.0 48 171-222 12-59 (91)
104 COG1307 DegV Uncharacterized p 25.0 1.5E+02 0.0033 27.8 5.3 56 197-258 60-118 (282)
105 cd06312 PBP1_ABC_sugar_binding 24.9 1.4E+02 0.003 25.9 4.8 41 173-216 44-84 (271)
106 TIGR03470 HpnH hopanoid biosyn 24.9 1.8E+02 0.0039 27.3 5.9 52 175-227 151-204 (318)
107 PRK06582 coproporphyrinogen II 24.9 1.8E+02 0.0038 28.4 5.9 55 162-220 68-127 (390)
108 KOG1329 Phospholipase D1 [Lipi 24.9 2.6E+02 0.0057 30.8 7.6 71 191-262 587-684 (887)
109 PRK14466 ribosomal RNA large s 24.7 6.6E+02 0.014 24.5 11.5 147 99-253 149-320 (345)
110 cd00950 DHDPS Dihydrodipicolin 24.5 4.7E+02 0.01 23.7 8.3 49 189-241 69-120 (284)
111 PF15186 TEX13: Testis-express 24.5 29 0.00064 30.3 0.4 30 103-135 22-59 (152)
112 PRK08599 coproporphyrinogen II 24.4 2.1E+02 0.0045 27.3 6.2 54 162-219 57-115 (377)
113 PRK15404 leucine ABC transport 24.1 5.9E+02 0.013 23.9 9.2 49 170-218 172-220 (369)
114 cd06360 PBP1_alkylbenzenes_lik 24.1 2.7E+02 0.0058 24.9 6.6 50 171-220 146-195 (336)
115 PF01261 AP_endonuc_2: Xylose 23.9 4.1E+02 0.0088 21.8 9.0 69 173-241 26-112 (213)
116 PLN02812 5-formyltetrahydrofol 23.9 2.1E+02 0.0046 25.3 5.8 35 188-223 47-82 (211)
117 PRK05904 coproporphyrinogen II 23.7 2.3E+02 0.005 27.2 6.4 51 162-218 62-117 (353)
118 PRK13347 coproporphyrinogen II 23.6 1.7E+02 0.0036 29.0 5.6 55 161-219 108-167 (453)
119 PF13407 Peripla_BP_4: Peripla 23.5 1.2E+02 0.0027 25.9 4.1 45 173-221 42-86 (257)
120 cd06338 PBP1_ABC_ligand_bindin 23.5 5.5E+02 0.012 23.1 9.3 55 171-226 153-207 (345)
121 cd06350 PBP1_GPCR_family_C_lik 23.5 2.2E+02 0.0048 25.7 6.0 54 171-225 172-227 (348)
122 PF00532 Peripla_BP_1: Peripla 23.4 3.1E+02 0.0067 24.8 6.9 45 175-221 19-63 (279)
123 cd06320 PBP1_allose_binding Pe 23.2 1.9E+02 0.0042 24.9 5.3 40 174-216 45-84 (275)
124 cd06347 PBP1_ABC_ligand_bindin 23.2 3E+02 0.0064 24.5 6.7 50 171-220 148-197 (334)
125 cd06342 PBP1_ABC_LIVBP_like Ty 23.1 2.5E+02 0.0055 25.0 6.2 55 170-225 146-200 (334)
126 COG0528 PyrH Uridylate kinase 22.9 3.3E+02 0.0071 25.5 6.9 62 171-235 79-147 (238)
127 cd04502 SGNH_hydrolase_like_7 22.9 2.8E+02 0.006 22.6 6.0 42 218-259 92-134 (171)
128 cd06352 PBP1_NPR_GC_like Ligan 22.7 2.7E+02 0.0058 25.8 6.5 53 171-225 150-204 (389)
129 PRK14469 ribosomal RNA large s 22.7 6.5E+02 0.014 24.0 9.2 142 99-253 149-320 (343)
130 cd01827 sialate_O-acetylestera 22.6 2.2E+02 0.0048 23.4 5.4 24 205-228 97-121 (188)
131 PRK09057 coproporphyrinogen II 22.5 2E+02 0.0043 27.7 5.7 55 162-220 61-120 (380)
132 PRK08207 coproporphyrinogen II 22.2 2.1E+02 0.0045 29.0 6.0 63 162-229 224-291 (488)
133 cd06331 PBP1_AmiC_like Type I 21.9 4.2E+02 0.009 24.0 7.5 51 171-221 144-194 (333)
134 cd03466 Nitrogenase_NifN_2 Nit 21.9 3E+02 0.0065 27.0 6.9 37 175-212 311-347 (429)
135 PF04748 Polysacc_deac_2: Dive 21.8 3.1E+02 0.0068 24.6 6.5 39 189-227 20-58 (213)
136 cd06322 PBP1_ABC_sugar_binding 21.8 2E+02 0.0043 24.7 5.1 45 173-220 42-86 (267)
137 COG0678 AHP1 Peroxiredoxin [Po 21.7 2.7E+02 0.0059 24.7 5.8 47 201-259 59-107 (165)
138 PRK05660 HemN family oxidoredu 21.6 2.2E+02 0.0048 27.4 5.9 57 162-220 64-123 (378)
139 PRK09249 coproporphyrinogen II 21.6 2E+02 0.0044 28.3 5.7 54 162-219 108-166 (453)
140 COG0159 TrpA Tryptophan syntha 21.4 2E+02 0.0042 27.3 5.3 109 100-225 18-133 (265)
141 KOG4357 Uncharacterized conser 21.3 68 0.0015 27.7 2.0 57 64-124 32-92 (164)
142 PRK05692 hydroxymethylglutaryl 21.0 3.5E+02 0.0076 25.3 6.9 37 184-220 130-174 (287)
143 KOG3093 5-formyltetrahydrofola 20.8 3.4E+02 0.0074 24.8 6.4 55 170-226 25-84 (200)
144 PF07894 DUF1669: Protein of u 20.8 2.2E+02 0.0048 27.2 5.5 45 199-248 131-175 (284)
145 PF08338 DUF1731: Domain of un 20.8 57 0.0012 22.8 1.2 17 194-210 31-47 (48)
146 cd01541 PBP1_AraR Ligand-bindi 20.7 2.3E+02 0.005 24.4 5.3 42 173-216 42-85 (273)
147 PRK07379 coproporphyrinogen II 20.7 2.4E+02 0.0051 27.5 5.9 55 162-220 72-131 (400)
148 cd06356 PBP1_Amide_Urea_BP_lik 20.6 2.9E+02 0.0062 25.3 6.2 53 171-224 144-196 (334)
149 cd06298 PBP1_CcpA_like Ligand- 20.5 2.5E+02 0.0054 23.9 5.4 40 173-217 42-81 (268)
150 cd06328 PBP1_SBP_like_2 Peripl 20.4 3.3E+02 0.0071 24.9 6.5 51 171-221 148-198 (333)
151 cd06318 PBP1_ABC_sugar_binding 20.3 2.3E+02 0.0049 24.5 5.2 44 174-220 43-86 (282)
152 cd06595 GH31_xylosidase_XylS-l 20.3 6.9E+02 0.015 23.1 8.9 25 201-227 74-98 (292)
153 TIGR03044 PS_II_psb27 photosys 20.2 3E+02 0.0066 23.7 5.7 57 114-184 70-126 (135)
154 TIGR01501 MthylAspMutase methy 20.0 2.4E+02 0.0053 23.8 5.1 82 128-219 31-115 (134)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=3e-49 Score=386.91 Aligned_cols=179 Identities=70% Similarity=1.092 Sum_probs=164.8
Q ss_pred ceeecCccccccccccccCCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhh
Q 024624 79 VATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEG 158 (265)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~ 158 (265)
..+..+... +++.+.+++|+||||+|||||++++||++||+|||+||+||++|+++|++|++|+++|+++|++|++++
T Consensus 71 ~~~~~~~~~--~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~ 148 (485)
T PLN02449 71 DSPDDDEAV--ADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEG 148 (485)
T ss_pred ccccccccc--cccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHH
Confidence 334444444 666788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 024624 159 YAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (265)
Q Consensus 159 Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~ 238 (265)
|+.|||+|||+.+|++|+++|+++|++.+.+++|++|||||+|||+|+|++|+++|+++||+||||||||.+||||+++.
T Consensus 149 Y~~IGGgSPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~ 228 (485)
T PLN02449 149 YASIGGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRL 228 (485)
T ss_pred HHHCCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHH
Confidence 99999999999999999999999998777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC--CcceEEeeccc
Q 024624 239 LQNIFRYCCV--SVNWKFLASSN 259 (265)
Q Consensus 239 l~~~l~~~~~--~~~lrfI~s~~ 259 (265)
+++++.+..+ .+.+++|++|-
T Consensus 229 l~~~~~~~~~~~~~~~~~I~~~~ 251 (485)
T PLN02449 229 LESIFREDEYLVNMQHTVIPSWY 251 (485)
T ss_pred HHHHHhhcccccCCeeEEecccc
Confidence 9999888765 45788888763
No 2
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=8.3e-48 Score=326.12 Aligned_cols=158 Identities=44% Similarity=0.715 Sum_probs=150.8
Q ss_pred eEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHH
Q 024624 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQAL 179 (265)
Q Consensus 100 ~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L 179 (265)
+||||+|||||++++||++||.+||+|++||++|.++ |++|+++|+++|++|++++|+.|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5899999999999999999999999999999999865 5689999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 180 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 180 ~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
++.|++.+.++.|++|||||+|+|+|+|++|+++|+++||++|||||||.+|||++++.+.+++.+.++.+.+++|++|.
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~~~~~~~i~~~~ 157 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRPAPELRVIRSFY 157 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCCCCcEEEeCccc
Confidence 99998766679999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred c
Q 024624 260 R 260 (265)
Q Consensus 260 ~ 260 (265)
+
T Consensus 158 ~ 158 (159)
T cd03411 158 D 158 (159)
T ss_pred c
Confidence 3
No 3
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=8e-46 Score=347.10 Aligned_cols=158 Identities=45% Similarity=0.699 Sum_probs=151.4
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 96 ~~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
+++|+||||||||||++++||++||++||+||+|+++|+++|+ +|+++|++.|++|++++|+.|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~---~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY---PLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh---hhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 4678999999999999999999999999999999999998765 3999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEe
Q 024624 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFL 255 (265)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI 255 (265)
+++|+++|+ .+++.|++|||||+|||+|++++|+++|+++||+||||||||++|||++++.+.+++++.+..+.+++|
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I 156 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQPKISTI 156 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCCCceEEe
Confidence 999999998 458999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred ecc
Q 024624 256 ASS 258 (265)
Q Consensus 256 ~s~ 258 (265)
++|
T Consensus 157 ~~~ 159 (320)
T COG0276 157 PDY 159 (320)
T ss_pred cCc
Confidence 876
No 4
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=7e-46 Score=346.17 Aligned_cols=158 Identities=42% Similarity=0.669 Sum_probs=141.8
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHH
Q 024624 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178 (265)
Q Consensus 99 K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~ 178 (265)
|+||||+|||||++++||++||++||+|++||++| ++| +++|+++|+++|++|++++|+.|||+|||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 665 469999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeecc
Q 024624 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASS 258 (265)
Q Consensus 179 L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~ 258 (265)
|+++|++.+.+++|++|||||+|+|+|++++|+++|+++||+||||||||.+|||++++.+.+++.+.++.+.+++|+.|
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~ 157 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSF 157 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCc
Confidence 99999987778999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 024624 259 N 259 (265)
Q Consensus 259 ~ 259 (265)
-
T Consensus 158 ~ 158 (316)
T PF00762_consen 158 Y 158 (316)
T ss_dssp T
T ss_pred c
Confidence 3
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=3.1e-45 Score=342.00 Aligned_cols=161 Identities=48% Similarity=0.746 Sum_probs=150.7
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 96 ~~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
+++|+||||+|||||++++||++||++||+|++||++|+++| ++++.++|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~~--~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAKW--RKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCcccc--ccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 456789999999999999999999999999999999998654 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCC-cceEE
Q 024624 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVS-VNWKF 254 (265)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~-~~lrf 254 (265)
+++|++.|++. .+++|++|||||+|+|++++++|+++|+++|++||||||||.+|||++++.+.+++.+.... +.+++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~~~~~~~ 158 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSLRPTISV 158 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccCCCeEEE
Confidence 99999999754 57999999999999999999999999999999999999999999999999999999988765 89999
Q ss_pred eeccc
Q 024624 255 LASSN 259 (265)
Q Consensus 255 I~s~~ 259 (265)
|+.|.
T Consensus 159 i~~~~ 163 (322)
T TIGR00109 159 IESWY 163 (322)
T ss_pred eCccc
Confidence 98764
No 6
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.9e-44 Score=333.04 Aligned_cols=159 Identities=51% Similarity=0.815 Sum_probs=150.8
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (265)
+.|+||||||||||++++||.+||.++|.|++||++|++ +|..|+++|+++|+||+.++|+.|||||||..||+.|+
T Consensus 36 k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~~---~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~Q~ 112 (395)
T KOG1321|consen 36 KPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPAF---LQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEYQA 112 (395)
T ss_pred CCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCHH---HHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHHHH
Confidence 448999999999999999999999999999999999974 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC---CCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCC--Ccc
Q 024624 177 QALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCV--SVN 251 (265)
Q Consensus 177 ~~L~~~L~~~g---~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~--~~~ 251 (265)
+.+.+.|+++. ....+|+|||||+|+++|+++||+++|++|+|+||+|||||++|+||+++.+.+.+.+..+ ...
T Consensus 113 ~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~~ 192 (395)
T KOG1321|consen 113 EEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIK 192 (395)
T ss_pred HHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCCc
Confidence 99999999886 5689999999999999999999999999999999999999999999999999999999876 557
Q ss_pred eEEeecc
Q 024624 252 WKFLASS 258 (265)
Q Consensus 252 lrfI~s~ 258 (265)
|..|++|
T Consensus 193 wsiIdrW 199 (395)
T KOG1321|consen 193 WSIIDRW 199 (395)
T ss_pred eEeeccc
Confidence 8888877
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=3.2e-42 Score=320.32 Aligned_cols=160 Identities=47% Similarity=0.708 Sum_probs=151.9
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (265)
++|+||||+|||||++++||++||++||+||+|+++|+++|+ ++|+++|+++|++|++++|+.||+||||+.+|++|+
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~--~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 80 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQ--PLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQA 80 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHH--HHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 478999999999999999999999999999999999998875 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEee
Q 024624 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLA 256 (265)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~ 256 (265)
++|++.|++.+.++.|++||+||+|+|+|+|++|+++|+++|+++|||||||.+|+|++.+.+.+++++....+.+++++
T Consensus 81 ~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~~~~i~~i~ 160 (333)
T PRK00035 81 EALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRLQPEIRFIR 160 (333)
T ss_pred HHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCCCCcEEEeC
Confidence 99999998767789999999999999999999999999999999999999999999999999999999887778888886
Q ss_pred cc
Q 024624 257 SS 258 (265)
Q Consensus 257 s~ 258 (265)
.+
T Consensus 161 ~~ 162 (333)
T PRK00035 161 SY 162 (333)
T ss_pred Cc
Confidence 65
No 8
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=6.5e-38 Score=292.40 Aligned_cols=145 Identities=30% Similarity=0.433 Sum_probs=127.0
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 96 ~~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
|++|+||||||||||++++||++||+|++.|+. |. +..|+. ++++|++|||+|||+.+|++|
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~~-----~~~l~~---------~~~~Y~~iGG~SPL~~~T~~q 62 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----PS-----EEMLQD---------LKDRYEAIGGISPLAKITDEQ 62 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----CC-----HHHHHH---------HHHHHHHhCCcChHHHHHHHH
Confidence 466789999999999999999999999999972 31 123333 369999999999999999999
Q ss_pred HHHHHHHHHhC--CCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceE
Q 024624 176 AQALKTALEAK--NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWK 253 (265)
Q Consensus 176 a~~L~~~L~~~--g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lr 253 (265)
+++|+++|++. +.+++|++|||||+|+|+|+|++|+++|+++||+||||||||.+||||+.+.+.++..+ ...+.++
T Consensus 63 a~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~-~~~~~~~ 141 (311)
T PRK12435 63 AKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEK-LGGPTIT 141 (311)
T ss_pred HHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhcc-cCCCeEE
Confidence 99999999764 35799999999999999999999999999999999999999999999999988877765 4467889
Q ss_pred Eeeccc
Q 024624 254 FLASSN 259 (265)
Q Consensus 254 fI~s~~ 259 (265)
+|++|.
T Consensus 142 ~i~~~~ 147 (311)
T PRK12435 142 SIESWY 147 (311)
T ss_pred EeCCcc
Confidence 988764
No 9
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.34 E-value=1.5e-11 Score=94.85 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCceEEEeEecC-CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 166 SPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~-~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
||.+..+++++++|++.++ +.+|++||+++ .|++++++++|.++|+++|+++|+||+....+...+.+.+.+...
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~~~~~~~~~ 88 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFYDIDSEIGLVRK 88 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHHHHHHHHHHHHH
Confidence 4677888889988887764 46799999999 999999999999999999999999999444444477777776655
Q ss_pred h
Q 024624 245 Y 245 (265)
Q Consensus 245 ~ 245 (265)
+
T Consensus 89 ~ 89 (101)
T cd03409 89 Q 89 (101)
T ss_pred h
Confidence 3
No 10
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.12 E-value=1.2e-05 Score=65.38 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=54.4
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccc
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~ 229 (265)
+|.||+.. .+.+..+++.+.+.+++....|+.| |.|+.|+++++++++.+.|+++|+++|+|-.-+.
T Consensus 7 v~hGS~~~-~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~ 74 (126)
T PRK00923 7 VGHGSRLP-YNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGV 74 (126)
T ss_pred EeCCCCCh-HHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCc
Confidence 37778764 4456777777788766666789999 8899999999999999999999999999955444
No 11
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=97.95 E-value=0.00012 Score=60.97 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=50.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccc
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~ 229 (265)
+|.||+..+.. +..+.+.+.+.+. .++.|+.| |-+.+|+++|+++++.++|+++|+|+|+|-.-+.
T Consensus 6 vgHGSR~~~~~-~~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~ 72 (125)
T cd03415 6 ITHGSRRNTFN-EDMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGN 72 (125)
T ss_pred EecCCCChHHH-HHHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCc
Confidence 47888887544 4445555566432 34568888 8899999999999999999999999999966543
No 12
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=97.88 E-value=0.00014 Score=57.85 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=53.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEec-CCCCHHHHHHHHHHcCCCEEEEEecCCCcccc
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY-~~P~IedaL~qL~~~GidrIVvLPLyPQYS~s 230 (265)
+|.||+.... .+..+.+.+.+.+......|+.|+-. +.|.++++++++.++|+++|+++|+|-.-..-
T Consensus 6 v~HGS~~~~~-~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 6 VGRGSSDPDA-NADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred EcCCCCCHHH-HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 4778875544 45677777777666555789999655 69999999999999999999999998665543
No 13
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.84 E-value=7.4e-05 Score=59.93 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=51.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+|.||+... .+.-+.|++.+.+... ..|++|+-=+.|.++++++++.+.|+++|+++|++-.
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~L~ 67 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLMLV 67 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehhhe
Confidence 588898875 3677788888876544 5788885559999999999999999999999999854
No 14
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=97.82 E-value=0.00024 Score=55.23 Aligned_cols=77 Identities=23% Similarity=0.226 Sum_probs=55.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~ 240 (265)
+.||+.. ...+..+.+.+.+.+......|+.| +....|.++++++++.++|+++|+++|+|-..+.-+..-.-+.+.
T Consensus 6 ~hGS~~~-~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~~~ 83 (101)
T cd03416 6 GHGSRDP-RAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAALA 83 (101)
T ss_pred EcCCCCH-HHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHHHH
Confidence 5567665 3334556666666655545678888 566799999999999999999999999997776655543433443
No 15
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.72 E-value=0.0004 Score=57.33 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=58.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEe------------cCCCCHHHHHHHHHHcCCCEEEEEecCCCcccc
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMr------------Y~~P~IedaL~qL~~~GidrIVvLPLyPQYS~s 230 (265)
|.||.-. ..++--+++.+.+.+..+++.|+.||. ...|.++++|++|.++|+++|+|.|++-.
T Consensus 7 ~fGS~~~-~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~---- 81 (127)
T cd03412 7 SFGTSYP-TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII---- 81 (127)
T ss_pred eCCCCCH-HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE----
Confidence 5556555 444556677777766667889999976 45899999999999999999999999944
Q ss_pred chHHHHHHHHHHHHhcC
Q 024624 231 TTGSSIRVLQNIFRYCC 247 (265)
Q Consensus 231 TtgS~~~~l~~~l~~~~ 247 (265)
.|.-.+.+.+.+.+..
T Consensus 82 -~G~e~~di~~~v~~~~ 97 (127)
T cd03412 82 -PGEEYEKLKREVDAFK 97 (127)
T ss_pred -CcHHHHHHHHHHHHHh
Confidence 3444566666665543
No 16
>PLN02757 sirohydrochlorine ferrochelatase
Probab=97.63 E-value=0.00085 Score=57.54 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=50.7
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccch
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTT 232 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTt 232 (265)
+|.||+-.. ..+..+.+.+.|.++.....|..| |.+.+|+++++|+++.+.|+++|+|+|+|-.-+.-+.
T Consensus 19 vgHGSrd~~-a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~~ 89 (154)
T PLN02757 19 VDHGSRRKE-SNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHWQ 89 (154)
T ss_pred EeCCCCCHH-HHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcchH
Confidence 477888765 334445555555443323345566 7889999999999999999999999999977655543
No 17
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=97.51 E-value=0.0014 Score=54.76 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCCceEEEeEe-------cCCCCHHHHHHHHHHcCCCEEEEEec-CCCccccchHHHH
Q 024624 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPL-YPQFSISTTGSSI 236 (265)
Q Consensus 165 gSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMr-------Y~~P~IedaL~qL~~~GidrIVvLPL-yPQYS~sTtgS~~ 236 (265)
|.|-...+.+.+++|++.|.... ..+.+|+. ...|+++|+|+++.++|+++|+++|. |.....=|.--.-
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~~--~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~~Etl~di~ 113 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLPF--DEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELD 113 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccccccHHHHHHHH
Confidence 56778888888999988886322 23445533 23999999999999999999999999 7655544443332
Q ss_pred HHHHHHHHhcCCCcceEEeeccc
Q 024624 237 RVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 237 ~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
....+.+.+.+ ..++..+++.|
T Consensus 114 ~e~~~~~~~~G-~~~~~rvp~lN 135 (135)
T cd00419 114 IEYRELAEEAG-GENYRRVPCLN 135 (135)
T ss_pred HHHHHHHHHcC-CceEEEcCCCC
Confidence 23333343333 35677777766
No 18
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=97.44 E-value=0.00029 Score=54.96 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEeE-ecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccc
Q 024624 174 EQAQALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIST 231 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AM-rY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sT 231 (265)
...+.+.+.|.++.. ..|.+|| .+..|.++++++++.+.|+++|+|+|+|-.-+.-+
T Consensus 10 ~~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~ 67 (105)
T PF01903_consen 10 AELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYHV 67 (105)
T ss_dssp HHHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHH
T ss_pred HHHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccch
Confidence 334445555555444 7899996 68999999999999999999999999997554333
No 19
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=97.05 E-value=0.002 Score=61.93 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=50.3
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCcc
Q 024624 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFS 228 (265)
Q Consensus 161 ~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS 228 (265)
.+|.||...+.. +..+.|.+.|.+. .+++|+.| |-+.+|+++++++++.++|+++|+|+|+|-.-.
T Consensus 11 LvgHGSRdp~~~-~~~~~La~~l~~~-~~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~~G 77 (335)
T PRK05782 11 LIGHGSRRETFN-SDMEGMANYLKEK-LGVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLGRG 77 (335)
T ss_pred EEecCCCChHHH-HHHHHHHHHHHhc-cCCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEecccccCC
Confidence 458889877544 4445555566443 24568888 889999999999999999999999999985544
No 20
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0038 Score=57.45 Aligned_cols=78 Identities=28% Similarity=0.313 Sum_probs=60.8
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~ 240 (265)
+|.||++... .++.+++.+.+.+++....|..| |-+.+|.++++++.+..+|+++|+++|||-....=|+--.-..+.
T Consensus 8 vgHGsr~p~~-~~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DIP~~L~ 86 (245)
T COG2138 8 VGHGSRLPRG-REVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDIPAELG 86 (245)
T ss_pred eecCCCCccH-HHHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhcccHHHHH
Confidence 4788998866 45566666677777665677777 889999999999999999999999999998777666644434333
No 21
>PRK02395 hypothetical protein; Provisional
Probab=96.20 E-value=0.0097 Score=55.02 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=52.1
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccch
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTT 232 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTt 232 (265)
+|.||+......+..+.+.+.|.+++....|..||--.+|.++++++++. .++|+|+|+|-.-+.-+.
T Consensus 7 vgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL~~G~Hv~ 74 (279)
T PRK02395 7 VGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFISEGYFTE 74 (279)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEeccccchh
Confidence 48889766677777777777776655555788996669999999999985 589999999974444333
No 22
>PLN02449 ferrochelatase
Probab=95.74 E-value=0.1 Score=52.71 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCC--CCceEEEeEecC-----CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHH
Q 024624 164 GGSPLRKITDEQAQALKTALEAKN--LPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g--~~~~V~~AMrY~-----~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~ 236 (265)
.|.|-....++-+++|.+.|+..+ .++.+.+=-|.| .|+++|+|++|.++|+++|+++|.--..-. ..+..
T Consensus 294 ~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDh--iETL~ 371 (485)
T PLN02449 294 AGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEH--IETLE 371 (485)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccc--hHHHH
Confidence 357878888889999999997543 344433323445 899999999999999999999997643322 22222
Q ss_pred H--HHHHHHHhcCCCcceEEeecccc
Q 024624 237 R--VLQNIFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 237 ~--~l~~~l~~~~~~~~lrfI~s~~~ 260 (265)
| .-.+.+.+..-..++.++++.|.
T Consensus 372 EiDiE~re~a~e~G~~~~~rVP~LN~ 397 (485)
T PLN02449 372 EIDMEYRELALESGIENWGRVPALGC 397 (485)
T ss_pred HHHHHHHHHHHHcCCceEEEcCCCCC
Confidence 1 11122222233456888888884
No 23
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=95.73 E-value=0.095 Score=49.64 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=59.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecC-----CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~-----~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~ 238 (265)
.|+|-.....+.+++|.+.|+.. .++.+.+=-+++ .|+++++|+++.++|+++|+++|. -|..=...+..|.
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~~-~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~--gFv~D~lETl~ei 281 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGFP-NEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI--GFTADHLETLYEI 281 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCCC-CCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC--cccccchhHHHhh
Confidence 57887778888888888888621 233322222444 999999999999999999999998 2333222222221
Q ss_pred HH---HHHHhcCCCcceEEeecccc
Q 024624 239 LQ---NIFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 239 l~---~~l~~~~~~~~lrfI~s~~~ 260 (265)
-. +.+.+.+ ..++.++++.|.
T Consensus 282 ~~e~~~~~~~~G-~~~~~~vp~lN~ 305 (322)
T TIGR00109 282 DEEYREVAEDAG-GDKYQRCPALNA 305 (322)
T ss_pred hHHHHHHHHHcC-CCeEEECCCCCC
Confidence 11 2233332 345888888884
No 24
>PRK00035 hemH ferrochelatase; Reviewed
Probab=94.66 E-value=0.32 Score=45.70 Aligned_cols=89 Identities=16% Similarity=0.279 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCceEEEeEe-------cCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHH--
Q 024624 167 PLRKITDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR-- 237 (265)
Q Consensus 167 PL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMr-------Y~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~-- 237 (265)
|-....++.++.|.+.+... .-.+.+++. ...|+++|+|+++.++|+++|+++|.. |..-......|
T Consensus 209 ~Y~~~~~~t~~~l~~~l~~~--~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~--Fv~D~lEtl~ei~ 284 (333)
T PRK00035 209 PYQQQCEETARLLAEALGLP--DEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPG--FVSDHLETLEEID 284 (333)
T ss_pred ChHHHHHHHHHHHHHHhCCC--CCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCe--eeccchhHHHHHH
Confidence 33333555677777776521 123445544 368999999999999999999999975 22211111111
Q ss_pred -HHHHHHHhcCCCcceEEeecccc
Q 024624 238 -VLQNIFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 238 -~l~~~l~~~~~~~~lrfI~s~~~ 260 (265)
...+.+.+.+ ...+.++++.|.
T Consensus 285 ~e~~~~~~~~G-~~~~~~~~~ln~ 307 (333)
T PRK00035 285 IEYREIAEEAG-GEEFRRIPCLND 307 (333)
T ss_pred HHHHHHHHHcC-CceEEECCCCCC
Confidence 1222233322 235777877774
No 25
>PRK02395 hypothetical protein; Provisional
Probab=93.68 E-value=0.21 Score=46.19 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=45.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCcccc
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~s 230 (265)
|.||+....+.+...++.+.|.+....-.|++|+--..|.++++++++. .++|+|+|+|-.-..-
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL~~G~H 206 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFIADGFH 206 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeecccCcc
Confidence 8888765555555555555555433233688886668999999999874 4899999999655443
No 26
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=92.93 E-value=0.25 Score=45.96 Aligned_cols=61 Identities=28% Similarity=0.479 Sum_probs=46.1
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
+|.|+|.... .--.+|+..|.+.+ .-.|++|.-=+.|.+++++++|++.|++++.++||.-
T Consensus 147 mGHGt~h~an--~~Y~~l~~~l~~~~-~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMl 207 (262)
T PF06180_consen 147 MGHGTPHPAN--AAYSALQAMLKKHG-YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLML 207 (262)
T ss_dssp EE---SCHHH--HHHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESS
T ss_pred EeCCCCCCcc--HHHHHHHHHHHhCC-CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEeccc
Confidence 4888887643 35567888887653 2358999999999999999999999999999999974
No 27
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=92.78 E-value=0.3 Score=46.27 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=55.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeE--ecC-----CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHH
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM--RYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AM--rY~-----~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~ 236 (265)
.|.|-....++-+++|+++|+-. + +.+|+ +++ .|+++|+++++.++|+++|+++|.- |..=...+..
T Consensus 201 ~GdpY~~~~~~t~~~i~~~l~~~--~--~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~g--Fv~D~lETl~ 274 (316)
T PF00762_consen 201 KGDPYPAQCEETARLIAERLGLP--E--WRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPG--FVSDCLETLY 274 (316)
T ss_dssp CT-SHHHHHHHHHHHHHHHTTTS--S--EEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT---SSSSHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHcCCC--c--eEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECCc--cccccHhHHH
Confidence 46788888888888888888532 2 44443 234 5999999999999999999999965 3333333332
Q ss_pred HH---HHHHHHhcCCCcceEEeecccc
Q 024624 237 RV---LQNIFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 237 ~~---l~~~l~~~~~~~~lrfI~s~~~ 260 (265)
|. ..+.+.+ .-..++.+|++.|.
T Consensus 275 eidie~re~~~~-~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 275 EIDIEYRELAEE-AGGEEFVRIPCLND 300 (316)
T ss_dssp CCCCHHHHHHHH-HTCCEEEE---STT
T ss_pred HHHHHHHHHHHH-cCCceEEEeCCCCC
Confidence 21 1223333 33457888888884
No 28
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=90.23 E-value=0.78 Score=42.76 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 200 YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 200 ~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
-|+..++|++|.++|+++|+|.||+ ..-|.=++.+.+....
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplh-----iipG~Ey~~l~~~v~~ 97 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLH-----IIPGEEYEKLRATVEA 97 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE-------SCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecc-----eeCcHhHHHHHHHHHH
Confidence 4789999999999999999999998 4455555666655544
No 29
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=85.36 E-value=7.1 Score=37.68 Aligned_cols=94 Identities=13% Similarity=0.253 Sum_probs=57.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCceEEE----e-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYV----G-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~----A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~ 238 (265)
.|.|-....++-+++|.+.|+-.-.++.+.+ | ...-.|+++|++++|.+.|+++|+++|.--. .=-.... .+
T Consensus 201 ~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pigFv--sDhlETL-~E 277 (320)
T COG0276 201 EGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIGFV--SDHLETL-YE 277 (320)
T ss_pred cCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCchh--hhhHHHH-HH
Confidence 4567777777778888888763212222222 1 2345799999999999999999999996532 2222222 22
Q ss_pred HHHHHH---hcCCCcceEEeecccc
Q 024624 239 LQNIFR---YCCVSVNWKFLASSNR 260 (265)
Q Consensus 239 l~~~l~---~~~~~~~lrfI~s~~~ 260 (265)
+....+ +..-..+...|++.|.
T Consensus 278 id~e~~e~~~~~Gg~~y~rip~lN~ 302 (320)
T COG0276 278 IDHEYRELAEEAGGKKYVRIPCLND 302 (320)
T ss_pred HHHHHHHHHHHhCCccEEecCCCCC
Confidence 222222 2233366777877773
No 30
>PRK12435 ferrochelatase; Provisional
Probab=84.11 E-value=9.9 Score=36.11 Aligned_cols=91 Identities=8% Similarity=0.042 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEe------cCCCCHHHHHHHHHHc-CCCEEEEEecCCCccccchHHHH
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------YWYPFTEEAVQQIKRD-RITRLVVLPLYPQFSISTTGSSI 236 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMr------Y~~P~IedaL~qL~~~-GidrIVvLPLyPQYS~sTtgS~~ 236 (265)
.|.|-....++-++++.+.|... ++.+.+==+ .-.|+++|+|+++.++ |+++|+|+|.--. .=-..+..
T Consensus 191 ~GDpY~~q~~~t~~~v~~~l~~~--~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFv--sDhlETl~ 266 (311)
T PRK12435 191 AGDPYPDQLEETADLIAEQANVE--HYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFV--AEHLEVLY 266 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCC--CCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchh--hhhHHHHH
Confidence 35688888888888888887532 344433333 3389999999999987 9999999996532 22222222
Q ss_pred HH---HHHHHHhcCCCcceEEeecccc
Q 024624 237 RV---LQNIFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 237 ~~---l~~~l~~~~~~~~lrfI~s~~~ 260 (265)
|. ..+.+.+.+. +...+++.|.
T Consensus 267 Eldie~~e~a~~~G~--~~~r~~~lN~ 291 (311)
T PRK12435 267 DNDYECKVVTDEIGA--KYYRPEMPNA 291 (311)
T ss_pred HHHHHHHHHHHHcCC--cEEeccCCCC
Confidence 21 1133444443 3555666663
No 31
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=72.56 E-value=25 Score=29.31 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=66.9
Q ss_pred eEEEEEccCCCCCcCcHHHHHHHhcCCC--CcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHH
Q 024624 100 VGVLLLNLGGPDTLHDVQPFLFNLFADP--DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQ 177 (265)
Q Consensus 100 ~aVLLvNlG~P~s~~dV~~FL~~fl~D~--~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~ 177 (265)
.-|+|.+.|+ +-=+-=..|...||.+- .|++++.. .....++...+ .+....|+ -|-+..-+.....
T Consensus 3 ~~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~-----~s~e~~v~aa~----e~~adii~-iSsl~~~~~~~~~ 71 (132)
T TIGR00640 3 PRILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLF-----QTPEEIARQAV----EADVHVVG-VSSLAGGHLTLVP 71 (132)
T ss_pred CEEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCC-----CCHHHHHHHHH----HcCCCEEE-EcCchhhhHHHHH
Confidence 3488888888 43333346777777776 57776531 12334443322 23444455 4777777888889
Q ss_pred HHHHHHHhCCC-CceEEEeEecCCCCHHHHHHHHHHcCCCEEE
Q 024624 178 ALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 178 ~L~~~L~~~g~-~~~V~~AMrY~~P~IedaL~qL~~~GidrIV 219 (265)
.+.++|.+.+. ++.|.+|=.. | ++-.+++++.|+++++
T Consensus 72 ~~~~~L~~~g~~~i~vivGG~~--~--~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 72 ALRKELDKLGRPDILVVVGGVI--P--PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHhcCCCCCEEEEeCCC--C--hHhHHHHHHCCCCEEE
Confidence 99999988764 6778886222 2 4456789999999875
No 32
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=71.61 E-value=28 Score=34.10 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=54.4
Q ss_pred HhhhhhcC----CCCchHHHHH--HHHHHHHHHHHhCCCCceEEEeEecCCCC--HHHHHHHHHHcCCCEEEEEecCCCc
Q 024624 156 KEGYAAIG----GGSPLRKITD--EQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLPLYPQF 227 (265)
Q Consensus 156 a~~Y~~IG----ggSPL~~~T~--~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~--IedaL~qL~~~GidrIVvLPLyPQY 227 (265)
++.+.+-| ||-||.++.+ +-+++|+.++. .++.+.+ |..+. -+++++.|.++|.|+|-+=|- +.
T Consensus 74 a~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~efG---~~fHiHL---YT~g~~~~~e~l~~L~eAGLDEIRfHp~--~~ 145 (353)
T COG2108 74 AKLMDALGASITGGDPLLEIERTVEYIRLLKDEFG---EDFHIHL---YTTGILATEEALKALAEAGLDEIRFHPP--RP 145 (353)
T ss_pred HHHhccccccccCCChHHHHHHHHHHHHHHHHhhc---cceeEEE---eeccccCCHHHHHHHHhCCCCeEEecCC--Cc
Confidence 34555554 7899998865 35566665553 3555544 55444 499999999999999999887 44
Q ss_pred cccchHHHHHHHHHHH
Q 024624 228 SISTTGSSIRVLQNIF 243 (265)
Q Consensus 228 S~sTtgS~~~~l~~~l 243 (265)
.......+++.+..+.
T Consensus 146 ~~~~~e~~i~~l~~A~ 161 (353)
T COG2108 146 GSKSSEKYIENLKIAK 161 (353)
T ss_pred cccccHHHHHHHHHHH
Confidence 4556666666666443
No 33
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=66.46 E-value=7 Score=35.90 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=35.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLy 224 (265)
|-||.++.+|+.--..|- + | +|+|.||..+++|++.|++.|+++.=|
T Consensus 9 G~gsR~~plT~~tpK~Ll---k-------V-----~g~plIErqI~~L~e~gI~dI~IVvGY 55 (231)
T COG4750 9 GLGSRFVPLTQSTPKSLL---K-------V-----NGEPLIERQIEQLREAGIDDITIVVGY 55 (231)
T ss_pred ccccccccccccCChHHH---H-------h-----cCcccHHHHHHHHHHCCCceEEEEeee
Confidence 556777777765444432 1 1 489999999999999999999998755
No 34
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=58.73 E-value=71 Score=29.49 Aligned_cols=54 Identities=11% Similarity=-0.017 Sum_probs=35.3
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +.+.++|+++.. ++.|+|-++++| |.|...|-...++.+.+....
T Consensus 72 ~~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 72 GKVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIIDS 128 (293)
T ss_pred CCCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHHh
Confidence 356666654 557888888744 456999888887 667666655555555554443
No 35
>PLN02757 sirohydrochlorine ferrochelatase
Probab=56.83 E-value=26 Score=30.02 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.9
Q ss_pred CCceEEEEEccCCCCC--cCcHHHHHHHh
Q 024624 97 EDKVGVLLLNLGGPDT--LHDVQPFLFNL 123 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s--~~dV~~FL~~f 123 (265)
.++.||||+..|+.+. .++++.+...+
T Consensus 11 ~~~~~lllvgHGSrd~~a~~~~~~la~~l 39 (154)
T PLN02757 11 GDKDGVVIVDHGSRRKESNLMLEEFVAMY 39 (154)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4466999999999984 34555555444
No 36
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=55.81 E-value=1.1e+02 Score=27.96 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 187 NLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 187 g~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
+.+++|..|- +..+++++++..+ +.|+|-++++| |+|...|....++.+.+...
T Consensus 68 ~~~~~vi~gv--~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 68 AGRVPVIAGV--GANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TTSSEEEEEE--ESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred cCceEEEecC--cchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 3467777774 5567999988554 56999988876 66666777666666665553
No 37
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.38 E-value=69 Score=29.70 Aligned_cols=105 Identities=22% Similarity=0.298 Sum_probs=57.0
Q ss_pred eEEEEEccCCCCCcCcHHHHHHHh-cCCCCcccCchhhhhhhhHHH--HHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624 100 VGVLLLNLGGPDTLHDVQPFLFNL-FADPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (265)
Q Consensus 100 ~aVLLvNlG~P~s~~dV~~FL~~f-l~D~~VI~iP~~~~~~~~~L~--~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (265)
.-|.-+..|-|+-.. -.+++..+ -.+-++|+|.-+ +..|++ ..|.. ...+.+.+|--+.. .-++.
T Consensus 13 ~li~yi~aG~P~~~~-~~~~~~~l~~~Gad~iElGiP---fSDP~aDGpvIq~-------a~~~AL~~G~~~~~-~~~~~ 80 (258)
T PRK13111 13 ALIPYITAGDPDLET-SLEIIKALVEAGADIIELGIP---FSDPVADGPVIQA-------ASLRALAAGVTLAD-VFELV 80 (258)
T ss_pred cEEEEEeCCCCCHHH-HHHHHHHHHHCCCCEEEECCC---CCCCcccCHHHHH-------HHHHHHHcCCCHHH-HHHHH
Confidence 455667777776322 22333332 234567765311 134555 34432 24455543433322 22233
Q ss_pred HHHHHHHHhCCCCceEEEeEecCCC----CHHHHHHHHHHcCCCEEEEE
Q 024624 177 QALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~AMrY~~P----~IedaL~qL~~~GidrIVvL 221 (265)
++++ ++..+.++ +-|.|++| .+++.++++++.|++-+++-
T Consensus 81 ~~~r----~~~~~~p~-vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 81 REIR----EKDPTIPI-VLMTYYNPIFQYGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred HHHH----hcCCCCCE-EEEecccHHhhcCHHHHHHHHHHcCCcEEEEC
Confidence 3343 22334555 48999999 55688999999999988773
No 38
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=55.15 E-value=39 Score=31.68 Aligned_cols=36 Identities=22% Similarity=0.518 Sum_probs=33.4
Q ss_pred eEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 191 NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 191 ~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+|++|--=+.|-++++|+.|++.|++++-++||--.
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlv 204 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLV 204 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEe
Confidence 789999999999999999999999999999998744
No 39
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=52.98 E-value=23 Score=33.62 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 024624 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (265)
Q Consensus 179 L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLy 224 (265)
+.+.+.+.|.+..|.-| .=.+|+++|.++.+.+-+.+++++||==
T Consensus 108 ~~~lf~~~Gv~~vi~gg-qt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 108 LAELFRSLGVDVVISGG-QTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred HHHHHHhCCCeEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 44555444544333332 2268999999999999999999999954
No 40
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=52.30 E-value=89 Score=29.15 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=34.9
Q ss_pred CCCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 187 NLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 187 g~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
+.+++|..|- +. .++++++..+ +.|++-++++| |.|...+-....+.+.....
T Consensus 74 ~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 74 AGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred CCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 3457788777 34 7888888554 46999888877 56666665555555544443
No 41
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=52.21 E-value=1.1e+02 Score=27.78 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.+++|..|- +.++++++++.. .+.|+|-++++| |.|...+-...++.+.+....
T Consensus 65 ~~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 65 GRVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred CCCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHhc
Confidence 356677665 567788888744 456999888866 666666666665655555443
No 42
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.72 E-value=76 Score=29.20 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=58.2
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHHh-cCCCCcccCchhhhhhhhHHH--HHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 99 KVGVLLLNLGGPDTLHDVQPFLFNL-FADPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 99 K~aVLLvNlG~P~s~~dV~~FL~~f-l~D~~VI~iP~~~~~~~~~L~--~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
+--|.-+..|-|+- +.-.+++..+ -.+-++|+|.-+ +..|++ ..|.. ...+.+..|--+... -+.
T Consensus 10 ~~li~y~~aG~P~~-~~~~~~~~~l~~~Gad~iElGiP---fsDP~aDGpvIq~-------a~~~al~~G~~~~~~-~~~ 77 (256)
T TIGR00262 10 GAFIPFVTAGDPTL-ETSLEIIKTLIEAGADALELGVP---FSDPLADGPTIQA-------ADLRALRAGMTPEKC-FEL 77 (256)
T ss_pred ceEEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEECCC---CCCCCCcCHHHHH-------HHHHHHHcCCCHHHH-HHH
Confidence 34566777788853 2223344433 234567765211 134554 34432 233444333333221 123
Q ss_pred HHHHHHHHHhCCCCceEEEeEecCCC----CHHHHHHHHHHcCCCEEEEEec
Q 024624 176 AQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~AMrY~~P----~IedaL~qL~~~GidrIVvLPL 223 (265)
.++++ +...++++. .|-|.+| .+++-++++++.|++-+++--+
T Consensus 78 v~~ir----~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl 124 (256)
T TIGR00262 78 LKKVR----QKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL 124 (256)
T ss_pred HHHHH----hcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC
Confidence 33333 222345665 8999999 5578899999999997766555
No 43
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=51.06 E-value=43 Score=27.38 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=44.5
Q ss_pred CcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHHHHHHHhCCCCce
Q 024624 112 TLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 191 (265)
Q Consensus 112 s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~ 191 (265)
++++|..||.+.|-|-+ |.++- -..+.|++.|.- |-+-+-+---.+.|=+.|...
T Consensus 19 ~ee~ia~yL~~~le~~d----~a~i~----~alg~var~~GM------------sqvA~~aGlsRe~LYkaLS~~----- 73 (100)
T COG3636 19 DEEAIAAYLNAALEEGD----PALIA----AALGVVARSRGM------------SQVARKAGLSREGLYKALSPG----- 73 (100)
T ss_pred CHHHHHHHHHHHHHcCC----HHHHH----HHHHHHHHhcCH------------HHHHHHhCccHHHHHHHhCCC-----
Confidence 56899999999999876 65431 233666665532 222222212233445555432
Q ss_pred EEEeEecCCCCHHHHHHHHHHcCCC
Q 024624 192 VYVGMRYWYPFTEEAVQQIKRDRIT 216 (265)
Q Consensus 192 V~~AMrY~~P~IedaL~qL~~~Gid 216 (265)
++|.+..+++=++.-|++
T Consensus 74 -------GNPtf~Til~V~kAlG~r 91 (100)
T COG3636 74 -------GNPTFDTILAVLKALGLR 91 (100)
T ss_pred -------CCCcHHHHHHHHHHcCce
Confidence 688888888888888865
No 44
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=50.77 E-value=49 Score=32.63 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=47.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCC---CceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNL---PVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~---~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLy 224 (265)
.|.|-...-.+=..++-++|+.+++ -+.-.+| +-...|.++|+++.|-+.|.+.++++|..
T Consensus 244 ~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIa 308 (395)
T KOG1321|consen 244 AGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIA 308 (395)
T ss_pred cCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeeh
Confidence 3456666666666777788876653 2444566 77889999999999999999999999986
No 45
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=45.96 E-value=50 Score=31.38 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=31.7
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIV 219 (265)
+|||.|.. ..-++..+.|++.+.- ..+.++ .+. .+| ..++.++.|++.|+++|-
T Consensus 57 ~GGGtPs~l~~~~l~~ll~~i~~~~~~-~~~~ei--tie-~np~~lt~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 57 IGGGTPNTLSVEAFERLFESIYQHASL-SDDCEI--TTE-ANPELITAEWCKGLKGAGINRLS 115 (360)
T ss_pred eCCCchhcCCHHHHHHHHHHHHHhCCC-CCCCEE--EEE-eCCCCCCHHHHHHHHHcCCCEEE
Confidence 49999964 4444455555544431 112233 222 244 348899999999998763
No 46
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=44.97 E-value=1.5e+02 Score=27.55 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.+++|..|-- . .++++++..+ +.|+|-++++| |.|-..+-...++.+.+....
T Consensus 73 g~~pvi~gv~--~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 73 GKVPVYTGVG--G-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCES 128 (296)
T ss_pred CCCcEEEecC--c-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHhc
Confidence 4577888763 3 5999988655 46999888866 667666665555555554443
No 47
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.47 E-value=1.5e+02 Score=27.17 Aligned_cols=52 Identities=23% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l 243 (265)
.+++|..|- +..+++|+++..+ +.|+|-++++| |.|-..|-...++.+.+..
T Consensus 66 ~~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~ 120 (285)
T TIGR00674 66 GRVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIA 120 (285)
T ss_pred CCCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHH
Confidence 356777764 6667888888554 46999888877 5555555444444444433
No 48
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.27 E-value=2.1e+02 Score=25.92 Aligned_cols=51 Identities=8% Similarity=-0.061 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
.+.+.+++.+++.+.+.|.++.....+....+.....+.+++..+.|-|++
T Consensus 146 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~ 196 (340)
T cd06349 146 DWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIIL 196 (340)
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEE
Confidence 377888888999988776554433444556778899999999999986554
No 49
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=41.69 E-value=64 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=19.6
Q ss_pred CceEEEEEccCCCC------CcCcHHHHHHHhcCCC
Q 024624 98 DKVGVLLLNLGGPD------TLHDVQPFLFNLFADP 127 (265)
Q Consensus 98 ~K~aVLLvNlG~P~------s~~dV~~FL~~fl~D~ 127 (265)
+|+|+|++.+||-- |.+.+++=+..=|-|.
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDy 36 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDY 36 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccH
Confidence 36799999999865 3455555555544443
No 50
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=41.68 E-value=1.8e+02 Score=27.13 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=34.2
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++|+++..+ +.|+|-++++| |.|...+-...++.+......
T Consensus 68 g~~pvi~gv--~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 68 GRIPFAPGT--GALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred CCCcEEEEC--CcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHHh
Confidence 356666553 4567888877444 46999888887 667666655555555554443
No 51
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=41.65 E-value=99 Score=27.29 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=31.9
Q ss_pred HHHHHHhCCCCceEEE--eEe--cCCCCHHHHHHHHHHcCCCEEEEEec
Q 024624 179 LKTALEAKNLPVNVYV--GMR--YWYPFTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 179 L~~~L~~~g~~~~V~~--AMr--Y~~P~IedaL~qL~~~GidrIVvLPL 223 (265)
..+...+.|.++.+.+ +++ +...++.+.++++.+.|++.|.+-..
T Consensus 120 ~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 120 AIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 3334445565555554 577 77788899999999999998886555
No 52
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=41.39 E-value=26 Score=26.82 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEec
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPL 223 (265)
-+--+.+++++|++.|.+.|+++|+
T Consensus 48 ~~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 48 PEKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp ECCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3566899999999999999999997
No 53
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=41.36 E-value=1.1e+02 Score=27.96 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCCCHHHHHH---HHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 199 WYPFTEEAVQ---QIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 199 ~~P~IedaL~---qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
+.|+..+..+ ++.++|+|+|+++++....|.| ..+ ...+.+.+ ...+++++++-+
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgt-y~~-a~~aa~~~----~~~~i~ViDS~~ 118 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGT-YNS-ARLAAKML----PDIKIHVIDSKS 118 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-TH-HHH-HHHHHHHH----TTTEEEEEE-SS
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhH-HHH-HHHHHhhc----CcCEEEEEeCCC
Confidence 5888865554 6566899999999998776542 212 22222223 455788887754
No 54
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=41.16 E-value=2.9e+02 Score=25.57 Aligned_cols=53 Identities=13% Similarity=-0.011 Sum_probs=35.4
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
..++|.+|- +...++|+++..+ +.|+|-++++| |.|-..|-...++.+.+...
T Consensus 69 ~~~pvi~gv--~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 69 DQIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIA 124 (290)
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHh
Confidence 356666654 3456888887444 46999888866 77877776666665555544
No 55
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=40.64 E-value=1.3e+02 Score=24.36 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCC-----CHHHHHHHHHHcCCCEEEEEecCCCc
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-----FTEEAVQQIKRDRITRLVVLPLYPQF 227 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P-----~IedaL~qL~~~GidrIVvLPLyPQY 227 (265)
++..++++.. .+.|. +.|...+-.+-| .+++.++.+.+.|++.|.+.|+.|..
T Consensus 136 ~~~~~~i~~~-~~~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 193 (216)
T smart00729 136 EDVLEAVEKL-REAGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRP 193 (216)
T ss_pred HHHHHHHHHH-HHhCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCC
Confidence 3444444433 33442 455555556555 45556667777899999999999884
No 56
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=40.27 E-value=1.1e+02 Score=28.12 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLP 222 (265)
+.+.+++.+++.+.+.|.++.....+..........++++++.|.+-|++..
T Consensus 150 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~ 201 (347)
T cd06335 150 WGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVG 201 (347)
T ss_pred hhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEe
Confidence 6677888888888877755443444555677889999999999998666643
No 57
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=40.25 E-value=2.1e+02 Score=25.49 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCC-------C------------CHHHHHHHHHHcCCCEEEEEecCCCccccc
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWY-------P------------FTEEAVQQIKRDRITRLVVLPLYPQFSIST 231 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~-------P------------~IedaL~qL~~~GidrIVvLPLyPQYS~sT 231 (265)
+.+..|+++.+++++ ..|.-.+.|+. | .+.|+++.|.+.|+++||++-=- -.
T Consensus 41 ia~~~a~~~a~~~~~----~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngH-----gG 111 (237)
T PF02633_consen 41 IAEAVAERAAERLGE----ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGH-----GG 111 (237)
T ss_dssp HHHHHHHHHHHHHTH----EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESS-----TT
T ss_pred HHHHHHHHHHHHCCc----EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECC-----Hh
Confidence 445566666666652 44444455554 4 46788888889999999998532 12
Q ss_pred hHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 232 TGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 232 tgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
-...++.+.+.+........+.+++++.
T Consensus 112 N~~~l~~~~~~l~~~~~~~~v~~~~~~~ 139 (237)
T PF02633_consen 112 NIAALEAAARELRQEYPGVKVFVINWWQ 139 (237)
T ss_dssp HHHHHHHHHHHHHHHGCC-EEEEEEGGG
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeechh
Confidence 2233555555555555566677776654
No 58
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=39.42 E-value=1.4e+02 Score=28.10 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=33.0
Q ss_pred CCCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 187 g~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
+.+++|.+|- +...++|+++.. .+.|+|-++++|- .|-..|....++.+.+....
T Consensus 75 ~grvpvi~Gv--~~~~t~~ai~~a~~A~~~Gad~vlv~~P--~y~~~~~~~l~~yf~~va~a 132 (309)
T cd00952 75 AGRVPVFVGA--TTLNTRDTIARTRALLDLGADGTMLGRP--MWLPLDVDTAVQFYRDVAEA 132 (309)
T ss_pred CCCCCEEEEe--ccCCHHHHHHHHHHHHHhCCCEEEECCC--cCCCCCHHHHHHHHHHHHHh
Confidence 3456777653 345577777744 4569998888874 45555555555555444443
No 59
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=38.62 E-value=1.4e+02 Score=31.88 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=75.9
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcc-cCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDII-RLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI-~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
+++.-|+|.++|++. -+-=..|..+||.+--+- ..+..+ .....++.-.+ .+..+.++ -|-+...+.++
T Consensus 580 g~rpkV~LatlG~d~-H~~ra~fv~~~l~~~GfeV~~~~~~----~s~e~~v~aa~----~~~a~ivv-lcs~d~~~~e~ 649 (714)
T PRK09426 580 GRRPRILVAKMGQDG-HDRGAKVIATAFADLGFDVDIGPLF----QTPEEAARQAV----ENDVHVVG-VSSLAAGHKTL 649 (714)
T ss_pred CCCceEEEEecCCcc-hhHhHHHHHHHHHhCCeeEecCCCC----CCHHHHHHHHH----HcCCCEEE-EeccchhhHHH
Confidence 445579999999974 344457889998876421 222111 12234433322 22333333 25566667778
Q ss_pred HHHHHHHHHhCCC-CceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHH
Q 024624 176 AQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (265)
Q Consensus 176 a~~L~~~L~~~g~-~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l 243 (265)
+..+.+.|.+.|. ++.|.+| |.|--++ .+++++.|+|..+- ..+.+-..++.+.+.+
T Consensus 650 ~~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i~-------~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 650 VPALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIFG-------PGTVIADAAIDLLELL 707 (714)
T ss_pred HHHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEEC-------CCCCHHHHHHHHHHHH
Confidence 9999999998875 5788888 7754333 37888999997652 2344444455544444
No 60
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=37.27 E-value=1.4e+02 Score=27.57 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=33.2
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
.+++|..|-. . .++++++.. .+.|+|-++++| |.|...+-...++.+.+...
T Consensus 68 ~~~pvi~gv~--~-~t~~~i~~a~~a~~~Gad~v~~~p--P~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 68 GRVPVLAGAG--Y-GTATAIAYAQAAEKAGADGILLLP--PYLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred CCCCEEEecC--C-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 3577777763 3 788888744 457999988877 55655555444454444433
No 61
>PLN02417 dihydrodipicolinate synthase
Probab=36.65 E-value=1.6e+02 Score=27.16 Aligned_cols=64 Identities=9% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
+.++...+.....++|..|. +.+.++|+++..+ +.|+|-++++| |.|...|-...++.+.+...
T Consensus 58 ~~~~~~~~~~~~~~pvi~gv--~~~~t~~~i~~a~~a~~~Gadav~~~~--P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 58 MLIGHTVNCFGGKIKVIGNT--GSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHHHHhCCCCcEEEEC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CccCCCCHHHHHHHHHHHHh
Confidence 33333333323345666543 5677888888654 56999877776 56766666555555555444
No 62
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.27 E-value=67 Score=30.00 Aligned_cols=112 Identities=24% Similarity=0.339 Sum_probs=57.5
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHHhcC-CCCcccCchhhhhhhhHHH--HHHHhccchhhHhhhhhcCCCCchHHHHH
Q 024624 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFA-DPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITD 173 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~-D~~VI~iP~~~~~~~~~L~--~iI~~~R~~ksa~~Y~~IGggSPL~~~T~ 173 (265)
+++.-|.-+..|-|+ ++.-.+++..+-. +-++|+|.-+ +..|++ ..|.. ...+.+..|.-+.
T Consensus 8 ~~~~li~yitaG~P~-~~~~~~~~~~l~~~GaD~iEiGiP---fSDP~ADGpvIq~-------A~~rAL~~G~~~~---- 72 (259)
T PF00290_consen 8 GRKALIPYITAGYPD-LETTLEILKALEEAGADIIEIGIP---FSDPVADGPVIQK-------ASQRALKNGFTLE---- 72 (259)
T ss_dssp TBTEEEEEEETTSSS-HHHHHHHHHHHHHTTBSSEEEE-----SSSCTTSSHHHHH-------HHHHHHHTT--HH----
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEECCC---CCCCCCCCHHHHH-------HHHHHHHCCCCHH----
Confidence 344456677788887 3333345555443 5577775211 134554 34432 2333343333222
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCCC----HHHHHHHHHHcCCCEEEEEecCCC
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYPF----TEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~----IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+.-.+-+.+.++..++++ +-|.|++|. ++.-++++++.|++-+| +|=.|.
T Consensus 73 -~~~~~~~~ir~~~~~~pi-vlm~Y~N~i~~~G~e~F~~~~~~aGvdGlI-ipDLP~ 126 (259)
T PF00290_consen 73 -KIFELVKEIRKKEPDIPI-VLMTYYNPIFQYGIERFFKEAKEAGVDGLI-IPDLPP 126 (259)
T ss_dssp -HHHHHHHHHHHHCTSSEE-EEEE-HHHHHHH-HHHHHHHHHHHTEEEEE-ETTSBG
T ss_pred -HHHHHHHHHhccCCCCCE-EEEeeccHHhccchHHHHHHHHHcCCCEEE-EcCCCh
Confidence 222233333323345554 559999995 46677788888998655 455554
No 63
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=34.90 E-value=77 Score=25.59 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCc-hHHHHHHHHHHHHHHHHhCCCCceEEEeEec--------------CCCCHHHHHHHHHHcCCCEEEEEecCCCccc
Q 024624 165 GSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRY--------------WYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (265)
Q Consensus 165 gSP-L~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY--------------~~P~IedaL~qL~~~GidrIVvLPLyPQYS~ 229 (265)
||| -...|+..++.+.+.+.+.+.++++.---.| .++.+++.++++.+. |- +|-..|.|-.
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~a--D~--iI~~sP~y~~ 83 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEA--DG--IIFASPVYNG 83 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHS--SE--EEEEEEEBTT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecC--Ce--EEEeecEEcC
Confidence 465 6778999999999999876544444432222 344455566666653 43 3334455555
Q ss_pred cchHHHHHHHHHH
Q 024624 230 STTGSSIRVLQNI 242 (265)
Q Consensus 230 sTtgS~~~~l~~~ 242 (265)
.-++..-..++..
T Consensus 84 ~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 84 SVSGQLKNFLDRL 96 (152)
T ss_dssp BE-HHHHHHHHTH
T ss_pred cCChhhhHHHHHh
Confidence 5555554444433
No 64
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.62 E-value=1e+02 Score=25.06 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=11.2
Q ss_pred EEEEccCCCC-CcCcHHHHHHHh
Q 024624 102 VLLLNLGGPD-TLHDVQPFLFNL 123 (265)
Q Consensus 102 VLLvNlG~P~-s~~dV~~FL~~f 123 (265)
+-++|+|-+- +.+++...|.+.
T Consensus 22 ~~v~n~g~~G~~~~~~~~~l~~~ 44 (169)
T cd01828 22 VKVANRGISGDTTRGLLARLDED 44 (169)
T ss_pred CceEecCcccccHHHHHHHHHHH
Confidence 4456666555 234444444444
No 65
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=34.57 E-value=2e+02 Score=26.42 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=32.5
Q ss_pred CCceEEEeEecCCCCHHHHHHH---HHHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~q---L~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
..+.|..|- +...++|+++. .++.|++-++++| |.|...|-...++.+.+...
T Consensus 69 ~~~~viagv--~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~~~~~~~i~~~~~~v~~ 124 (288)
T cd00954 69 GKVTLIAHV--GSLNLKESQELAKHAEELGYDAISAIT--PFYYKFSFEEIKDYYREIIA 124 (288)
T ss_pred CCCeEEecc--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCCCCHHHHHHHHHHHHH
Confidence 356666653 34668888774 4567999888777 45555555445555554444
No 66
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.31 E-value=1.6e+02 Score=26.51 Aligned_cols=55 Identities=22% Similarity=0.078 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+.+..++.+++.+.+.|..+.-...+..+.......+.++++.+.|-| ++.+++.
T Consensus 149 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v-~~~~~~~ 203 (312)
T cd06346 149 YGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDAL-VVIGYPE 203 (312)
T ss_pred hhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEE-EEecccc
Confidence 566777888888877765544445566667778889999999888744 4555554
No 67
>PLN00061 photosystem II protein Psb27; Provisional
Probab=34.05 E-value=1.2e+02 Score=26.61 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=41.2
Q ss_pred CcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 024624 114 HDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALE 184 (265)
Q Consensus 114 ~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~ 184 (265)
+.|..|+.++..++.|-....+ --++..|+.+ +.+|..-|...||-+ +.-+.|.++|.
T Consensus 90 e~IndYisryR~~~~V~gl~Sf-ttMqtALnsL---------AghYssyGpnrPLPe---~lK~Rll~EL~ 147 (150)
T PLN00061 90 ESIREYLGNWRGQKTVAEEESY-VELEKAIRSL---------ASFYSKAGPSAPLPE---DVKSEILDDLN 147 (150)
T ss_pred HHHHHHHHHhcCCccccccchH-HHHHHHHHHH---------HHHHHhcCCCCCCCH---HHHHHHHHHHh
Confidence 5799999999999998777643 2334444444 789999999999975 34444555554
No 68
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=33.52 E-value=77 Score=32.57 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 024624 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (265)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLy 224 (265)
+.+.+.+.+.|.++.|. |=.=.+|+++|.++.+.+-+.+++++||==
T Consensus 324 ~g~~~~f~~~Ga~~vi~-ggqt~nPS~~dll~ai~~~~a~~V~iLPNn 370 (530)
T TIGR03599 324 EGIAELFKSLGADVVIE-GGQTMNPSTEDILKAIEKVNAKNVFVLPNN 370 (530)
T ss_pred chHHHHHHHCCCCEEEe-CCCCCCCCHHHHHHHHHhCCCCeEEEecCC
Confidence 34666676666655443 333458999999999999999999999865
No 69
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=33.27 E-value=1.1e+02 Score=26.24 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCCEE
Q 024624 204 EEAVQQIKRDRITRL 218 (265)
Q Consensus 204 edaL~qL~~~GidrI 218 (265)
.+.++.+.+.|+--+
T Consensus 70 ~~~~~~~~~~~ipvv 84 (270)
T cd01545 70 PELLDLLDEAGVPYV 84 (270)
T ss_pred cHHHHHHHhcCCCEE
Confidence 455667766666533
No 70
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=32.77 E-value=80 Score=31.22 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=37.1
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCC--CCceEEEeEecCCCC--HHHHHHHHHHcCCCEEEEEe
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKN--LPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLP 222 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g--~~~~V~~AMrY~~P~--IedaL~qL~~~GidrIVvLP 222 (265)
+|||.|-. .+.+|.+.|-+.|.+.. .+...++++-. .|. -.+-++.+++.|++||=+=+
T Consensus 93 ~GGGTPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~~~~~e~~~~l~~~GvNRiSlGV 155 (416)
T COG0635 93 FGGGTPSL-LSPEQLERLLKALRELFNDLDPDAEITIEA-NPGTVEAEKFKALKEAGVNRISLGV 155 (416)
T ss_pred ECCCcccc-CCHHHHHHHHHHHHHhcccCCCCceEEEEe-CCCCCCHHHHHHHHHcCCCEEEecc
Confidence 49999965 33444444444443321 23446777776 555 48899999999999874433
No 71
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=32.26 E-value=91 Score=31.20 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=52.2
Q ss_pred CcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHHHHHHHhCCCCceEE
Q 024624 114 HDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNVY 193 (265)
Q Consensus 114 ~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~ 193 (265)
+++--|.-+|-.|.|+++ .+|. |.+ +.+ +.+|+ +++|.+|.++|.+.|..+
T Consensus 360 D~~V~hFmrf~~d~R~lp---VlwH-qsl-----Ltf-----~QRYK--------~di~~eqkdaLlellr~~------- 410 (449)
T KOG3871|consen 360 DALVFHFMRFRTDERVLP---VLWH-QSL-----LTF-----AQRYK--------NDITQEQKDALLELLRLQ------- 410 (449)
T ss_pred HHHHHHHHHhhccccchh---HHHH-HHH-----HHH-----HHHHh--------hhcCHHHHHHHHHHHHhc-------
Confidence 566667778888888653 3453 222 222 57886 468999999999999754
Q ss_pred EeEecCCCCH-HHHHHHHHHcCCCEEEEEec
Q 024624 194 VGMRYWYPFT-EEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 194 ~AMrY~~P~I-edaL~qL~~~GidrIVvLPL 223 (265)
+++.| +|+.++|.....+.....+|
T Consensus 411 -----~H~~i~PEIrREL~~~~~r~~~~~~~ 436 (449)
T KOG3871|consen 411 -----GHYLIGPEIRRELLASASRDEEDPQM 436 (449)
T ss_pred -----CCCcCCHHHHHHHHhccccCccccch
Confidence 45566 78888888766665555554
No 72
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.14 E-value=1.7e+02 Score=26.53 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+.+..++.+++.+.+.|.++.-..-+.-..+.+...+.++++.|.|- |++-.++.
T Consensus 149 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~-vi~~~~~~ 203 (344)
T cd06348 149 FSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDL-IVISALAA 203 (344)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCE-EEECCcch
Confidence 56778888888888776554434445557788899999999999884 44554543
No 73
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.54 E-value=1.2e+02 Score=25.39 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
++|.+.+++.... +.+ ..+.+... +.... ++++.+.|+--|.+-...+
T Consensus 42 ~~~~~~~~~~~~~-~~d--~iii~~~~-~~~~~-~~~~~~~~ipvv~~~~~~~ 89 (264)
T cd06267 42 EKEREALELLLSR-RVD--GIILAPSR-LDDEL-LEELAALGIPVVLVDRPLD 89 (264)
T ss_pred HHHHHHHHHHHHc-CcC--EEEEecCC-cchHH-HHHHHHcCCCEEEeccccc
Confidence 4455555554432 333 33333332 23333 7888888888555544433
No 74
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=31.48 E-value=1.1e+02 Score=29.74 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=31.1
Q ss_pred cCCCCchHHHH---HHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEEE
Q 024624 162 IGGGSPLRKIT---DEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 162 IGggSPL~~~T---~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIVv 220 (265)
||||.|..--. ++..+.|++.++.. .+. ++.|.- .| ...+-++.|++.|+++|-+
T Consensus 79 ~GGGTPs~L~~~~L~~ll~~i~~~~~~~-~~~--eit~E~-~p~~~~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 79 IGGGTPSLLSAAGLDRLLSDVRALLPLD-PDA--EITLEA-NPGTFEAEKFAQFRASGVNRLSI 138 (394)
T ss_pred ECCCCcCCCCHHHHHHHHHHHHHhCCCC-CCC--eEEEEE-CCCCCCHHHHHHHHHcCCCeEEE
Confidence 39999976333 33333444443211 112 233322 33 3478899999999998754
No 75
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=31.46 E-value=1.1e+02 Score=29.04 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=29.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEE
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRL 218 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrI 218 (265)
+|||.|..- ...+.+.|.+.+...+....+.+.+. .+| ..++.++.|++.|+++|
T Consensus 57 ~gGGtps~l-~~~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~G~~rv 113 (374)
T PRK05799 57 IGGGTPTYL-SLEALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSMGVNRL 113 (374)
T ss_pred ECCCcccCC-CHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHcCCCEE
Confidence 588888641 22333344444432221112233332 244 45888999999999875
No 76
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=31.10 E-value=1.1e+02 Score=23.86 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCCccccc------hHHHHHHHHHHHHhcCCCcceEEeeccccc
Q 024624 203 TEEAVQQIKRDRITRLVVLPLYPQFSIST------TGSSIRVLQNIFRYCCVSVNWKFLASSNRF 261 (265)
Q Consensus 203 IedaL~qL~~~GidrIVvLPLyPQYS~sT------tgS~~~~l~~~l~~~~~~~~lrfI~s~~~~ 261 (265)
+++.++++...+ +|+++.+.|...... .....+.+.+++++..-..++.||+....|
T Consensus 91 l~~~i~~~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (179)
T PF13472_consen 91 LRRIIEQLRPHG--PVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFIDLFDAF 153 (179)
T ss_dssp HHHHHHHHHTTS--EEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEEEHHHHH
T ss_pred HHHHHHhhcccC--cEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEEECHHHH
Confidence 344555566666 777777777665544 234444444444333222277777655433
No 77
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=97 Score=29.78 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvL 221 (265)
+.|.|+-+|+.|.+.|++++++.
T Consensus 31 gkPii~~~l~~L~~~Gv~eivi~ 53 (358)
T COG1208 31 GKPLIEYVLEALAAAGVEEIVLV 53 (358)
T ss_pred CccHHHHHHHHHHHCCCcEEEEE
Confidence 56666666666666666666655
No 78
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=29.99 E-value=95 Score=29.52 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCceEEEeEecCCCCHHHHHH--H--HHHcCCCEEEEEecCCCccccchHHHHHHHHHH
Q 024624 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQ--Q--IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (265)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~--q--L~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~ 242 (265)
.+.+.+.|.+.|+...+++.--|..|+..+-.. . -.+.-.+++|.||++|..+..-..-+++.+.+.
T Consensus 306 r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 306 RDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQI 376 (379)
T ss_pred HHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 556777787777554443322344444321000 0 011224678999999887766555555555443
No 79
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.81 E-value=1.3e+02 Score=25.31 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=52.7
Q ss_pred CcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHHHHHHHhCCC-CceEEEeEec--CCCCHH
Q 024624 128 DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGMRY--WYPFTE 204 (265)
Q Consensus 128 ~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~-~~~V~~AMrY--~~P~Ie 204 (265)
.||++.. ..+...++...+ .+.=+.|| -|-|+..|......+.++|.+.+. ++.|.+|=.. ...-.+
T Consensus 29 eVidLG~-----~v~~e~~v~aa~----~~~adiVg-lS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~ 98 (128)
T cd02072 29 NVVNLGV-----LSPQEEFIDAAI----ETDADAIL-VSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFE 98 (128)
T ss_pred EEEECCC-----CCCHHHHHHHHH----HcCCCEEE-EeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhH
Confidence 5777652 123455554322 12223344 488888888888888889988874 7889988432 222336
Q ss_pred HHHHHHHHcCCCEEE
Q 024624 205 EAVQQIKRDRITRLV 219 (265)
Q Consensus 205 daL~qL~~~GidrIV 219 (265)
+..++|++.|++++.
T Consensus 99 ~~~~~L~~~Gv~~vf 113 (128)
T cd02072 99 DVEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHHHcCCCEEE
Confidence 677889999999763
No 80
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=29.61 E-value=3.2e+02 Score=22.54 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=33.4
Q ss_pred cCC-CCHHHHHHHHHH-cCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 198 YWY-PFTEEAVQQIKR-DRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 198 Y~~-P~IedaL~qL~~-~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.+. +..++.+++... .|+|+++.+. -|++.......+.+.+.+.+++
T Consensus 40 ~G~~~~~~~~l~~~l~~~G~d~v~~~~-~~~~~~~~~~~~a~~l~~~~~~ 88 (164)
T PF01012_consen 40 LGPAEEAAEALRKALAKYGADKVYHID-DPALAEYDPEAYADALAELIKE 88 (164)
T ss_dssp EETCCCHHHHHHHHHHSTTESEEEEEE--GGGTTC-HHHHHHHHHHHHHH
T ss_pred EecchhhHHHHhhhhhhcCCcEEEEec-CccccccCHHHHHHHHHHHHHh
Confidence 344 889999998777 9999999986 4555555666666777776666
No 81
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=29.46 E-value=1.1e+02 Score=29.10 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=29.2
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCC--HHHHHHHHHHcCCCEEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLV 219 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~--IedaL~qL~~~GidrIV 219 (265)
+|||.|.. +.-++..+.|++.+. .+.++.+- ..|. .++-++.|++.|+++|-
T Consensus 57 fGGGTPs~l~~~~l~~ll~~i~~~~~---~~~eitiE---~nP~~~~~e~l~~l~~~GvnRiS 113 (350)
T PRK08446 57 IGGGTPSTVSAKFYEPIFEIISPYLS---KDCEITTE---ANPNSATKAWLKGMKNLGVNRIS 113 (350)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcC---CCceEEEE---eCCCCCCHHHHHHHHHcCCCEEE
Confidence 48899954 223333444443321 22333322 2343 48889999999999874
No 82
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.38 E-value=2e+02 Score=26.22 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvL 221 (265)
.+.+..++.+++.+.+.|.++.-..-+....+.....+.+|++.+.+-|++.
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~ 206 (344)
T cd06345 155 AWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAG 206 (344)
T ss_pred hhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEe
Confidence 3566777888888877665443334455566788899999999998855543
No 83
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=29.22 E-value=2.3e+02 Score=22.62 Aligned_cols=48 Identities=15% Similarity=0.056 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCC-CceEEEeEecCCCCHHHHHHHHHHcCCCEEE
Q 024624 168 LRKITDEQAQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 168 L~~~T~~Qa~~L~~~L~~~g~-~~~V~~AMrY~~P~IedaL~qL~~~GidrIV 219 (265)
+...+..++..+.+.|.+.+. ++.+.+|-+. | ++-.+++++.|+|..+
T Consensus 59 ~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~--~--~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 59 LSGGHMTLFPEVIELLRELGAGDILVVGGGII--P--PEDYELLKEMGVAEIF 107 (122)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCEEEEECCC--C--HHHHHHHHHCCCCEEE
Confidence 345566667777777777654 6677777542 2 4557788888988765
No 84
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.92 E-value=1.8e+02 Score=26.38 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.6
Q ss_pred HHHHHHcCCC
Q 024624 207 VQQIKRDRIT 216 (265)
Q Consensus 207 L~qL~~~Gid 216 (265)
++.+++.|++
T Consensus 164 i~~l~~~Gi~ 173 (296)
T TIGR00433 164 LENAKKAGLK 173 (296)
T ss_pred HHHHHHcCCE
Confidence 4444445543
No 85
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=28.49 E-value=2.4e+02 Score=27.50 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcC
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCC 247 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~ 247 (265)
++| -++.++.-.+.|+|-| .|-|-|+.-+++..++.++.++.+..
T Consensus 99 G~p-ae~Iv~~Aee~~aDLI---Vm~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
T PRK12652 99 GDY-AEVLIAYAEEHGIDRV---VLDPEYNPGGTAPMLQPLERELARAG 143 (357)
T ss_pred CCH-HHHHHHHHHHcCCCEE---EECCCCCCCCCCcccchHHHHHHhcC
Confidence 555 4556666666789954 47899999999999999998877653
No 86
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=28.22 E-value=59 Score=28.74 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=38.7
Q ss_pred hhhhhcC--CCCchHHHHHHHHHHHHHHHHhC---CCCceEEEe--EecCCCC---HHHHHHHHHHcCCC
Q 024624 157 EGYAAIG--GGSPLRKITDEQAQALKTALEAK---NLPVNVYVG--MRYWYPF---TEEAVQQIKRDRIT 216 (265)
Q Consensus 157 ~~Y~~IG--ggSPL~~~T~~Qa~~L~~~L~~~---g~~~~V~~A--MrY~~P~---IedaL~qL~~~Gid 216 (265)
..|+-+. .-||=...+..=|++|.+-|.+. +..+.++++ +.++.|. .++.|+.|.+.|++
T Consensus 72 ~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~ 141 (188)
T PF08210_consen 72 QIYRITWYLSWSPCPESDHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQ 141 (188)
T ss_dssp SEEEEEEEESSS--CC----HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEE
T ss_pred ceEEEEEEEecCCCcchhhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCE
Confidence 4555553 45888874444566666666544 567888888 6677888 89999999999866
No 87
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=28.07 E-value=47 Score=31.26 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHH----HHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQ----QIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~----qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~ 240 (265)
..+.+.+.|.++|....+++...+..|......+ ...+.=.++++.||++|.++..-..-+++.+.
T Consensus 308 ~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~ 377 (380)
T TIGR03588 308 TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLR 377 (380)
T ss_pred CHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHH
Confidence 4677777887777655544433333343321000 00001124789999999987655544444443
No 88
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.05 E-value=5.6e+02 Score=24.79 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=76.8
Q ss_pred ceEEEEEccCCCC-CcCcHHHHHHHhcCCCCc----c-----cCchhhhhhhhHHHHHH------Hh------ccchhhH
Q 024624 99 KVGVLLLNLGGPD-TLHDVQPFLFNLFADPDI----I-----RLPRLFRFLQWPLAKLI------SV------VRAPKSK 156 (265)
Q Consensus 99 K~aVLLvNlG~P~-s~~dV~~FL~~fl~D~~V----I-----~iP~~~~~~~~~L~~iI------~~------~R~~ksa 156 (265)
-..|+++-||+|- .+++|..+++.+-.+-.| | .+++.+. -|+... .. +-+ -..
T Consensus 149 ~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~~~i~----~L~~~~~~~~~~~~~~laiSLha-~~~ 223 (345)
T PRK14457 149 VSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVPKTIP----QLAELAFQRLGRLQFTLAVSLHA-PNQ 223 (345)
T ss_pred CCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCchhhHH----HHHhhhhhhcccCceEEEEEeCC-CCH
Confidence 3589999999999 678899999887553222 1 1232211 121111 00 000 123
Q ss_pred hhhhhc-C--CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEe----cCCCCHHHHHHHHHHcCCCEEEEEecCCCcc-
Q 024624 157 EGYAAI-G--GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR----YWYPFTEEAVQQIKRDRITRLVVLPLYPQFS- 228 (265)
Q Consensus 157 ~~Y~~I-G--ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMr----Y~~P~IedaL~qL~~~GidrIVvLPLyPQYS- 228 (265)
+.|++| + .+-||. ++.+++.+.+.+.+..+.+++-+- -..-.+++..+-++.-++ +|=+||.-|.-.
T Consensus 224 e~r~~i~p~~~~~~l~----~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~ 298 (345)
T PRK14457 224 KLRETLIPSAKNYPIE----NLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQS-HVNLIPYNPIDEV 298 (345)
T ss_pred HHHHHhcCCccCCCHH----HHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCC
Confidence 455555 2 334444 455566666655555555555443 333333334444443344 688899987421
Q ss_pred --ccchHHHHHHHHHHHHhcCCCcce
Q 024624 229 --ISTTGSSIRVLQNIFRYCCVSVNW 252 (265)
Q Consensus 229 --~sTtgS~~~~l~~~l~~~~~~~~l 252 (265)
...+..-++++.+.+.+.+....+
T Consensus 299 ~~~~ps~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 299 EFQRPSPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 233445567777788776665544
No 89
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=28.04 E-value=1.6e+02 Score=25.13 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCCC
Q 024624 204 EEAVQQIKRDRIT 216 (265)
Q Consensus 204 edaL~qL~~~Gid 216 (265)
.+.++.+++.|+.
T Consensus 68 ~~~~~~~~~~~ip 80 (259)
T cd01542 68 DEHREAIKKLNVP 80 (259)
T ss_pred HHHHHHHhcCCCC
Confidence 4556666666654
No 90
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.00 E-value=4.7e+02 Score=23.87 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 169 ~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
..+.+..++.+++.+.+.|.++.....+..+.......+.++++.+.|- |++..++
T Consensus 154 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~-v~~~~~~ 209 (362)
T cd06343 154 DDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADV-VVLATTP 209 (362)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCE-EEEEcCc
Confidence 4567788888888888777665555556667778889999999999984 4455554
No 91
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=27.91 E-value=1.2e+02 Score=28.68 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCCCHHHH------HHHHHHcCCCEEEEEecCCCccccchHHHHHHHHH
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEA------VQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P~Ieda------L~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~ 241 (265)
..+.+.+.|.++|....+++--.|+.|..... +. -.+.=.++++.||++|.++..-..-+++.+.+
T Consensus 301 ~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p-~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~ 372 (375)
T PRK11706 301 DRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDR-YTTKESERLLRLPLFYNLTDVEQRTVIDTILE 372 (375)
T ss_pred CHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCCh-HHHHHHhCcEeccCCCCCCHHHHHHHHHHHHH
Confidence 46677778877776655554444555543321 00 00112467899999999887555444444443
No 92
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.85 E-value=5.3e+02 Score=24.95 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=70.9
Q ss_pred eEEEEEccCCCCC-cCcHHHHHHHhcCCCCc--------ccCchhhhhhhhHHHHHHHh---------ccchhhHhhhhh
Q 024624 100 VGVLLLNLGGPDT-LHDVQPFLFNLFADPDI--------IRLPRLFRFLQWPLAKLISV---------VRAPKSKEGYAA 161 (265)
Q Consensus 100 ~aVLLvNlG~P~s-~~dV~~FL~~fl~D~~V--------I~iP~~~~~~~~~L~~iI~~---------~R~~ksa~~Y~~ 161 (265)
..|+++.+|+|-. .+.|..+++.+-....+ |.-..... .+..++.. +-+. ..+.++.
T Consensus 161 ~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~----~i~~l~d~~l~~~LaiSL~a~-~~e~r~~ 235 (356)
T PRK14455 161 SHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAP----KIYDFADEGLQINLAISLHAP-NNELRSS 235 (356)
T ss_pred ceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchH----hHHHHHhcccCeeEEeccCCC-CHHHHHH
Confidence 3789999999984 78888888886543211 21111110 11111111 0011 0122222
Q ss_pred ---cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCC----CCHHHHHHHHHHcCCCEEEEEecCCCccc---cc
Q 024624 162 ---IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWY----PFTEEAVQQIKRDRITRLVVLPLYPQFSI---ST 231 (265)
Q Consensus 162 ---IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~----P~IedaL~qL~~~GidrIVvLPLyPQYS~---sT 231 (265)
|..+-|+. +..+++++.....+..+.+.+.|-=+. -.+++..+-++.-+ .+|-++|.-|.... ..
T Consensus 236 l~pi~~~~~l~----~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky~~p 310 (356)
T PRK14455 236 LMPINRAYPLE----KLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDYVRT 310 (356)
T ss_pred hcCcccCCCHH----HHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCCcCC
Confidence 22333443 344445544443344555544433222 23344444443334 57999998885431 23
Q ss_pred hHHHHHHHHHHHHhcCCCcceE
Q 024624 232 TGSSIRVLQNIFRYCCVSVNWK 253 (265)
Q Consensus 232 tgS~~~~l~~~l~~~~~~~~lr 253 (265)
+...+..+.+.+.+.+....+|
T Consensus 311 s~e~l~~f~~~L~~~gi~v~ir 332 (356)
T PRK14455 311 PKEDIFAFEDTLKKNGVNCTIR 332 (356)
T ss_pred CHHHHHHHHHHHHHCCCcEEEe
Confidence 3445567777887776655443
No 93
>PLN03194 putative disease resistance protein; Provisional
Probab=27.74 E-value=2.7e+02 Score=25.09 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCCceEEE---eEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 175 QAQALKTALEAKNLPVNVYV---GMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~---AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.+.-|.+.|...|. .|+. -|+-|....++..+.+.+ .++.++.+.|.|..++- +++++..++..
T Consensus 42 FvshL~~aL~~~GI--~vF~D~~el~~G~~i~~~L~~AIee---Sri~IvVfS~~Ya~S~W--CLdEL~~I~e~ 108 (187)
T PLN03194 42 IATLLYDHLSRLNL--RPFLDNKNMKPGDKLFDKINSAIRN---CKVGVAVFSPRYCESYF--CLHELALIMES 108 (187)
T ss_pred HHHHHHHHHHHCCC--EEEEcCccccCCCcHHHHHHHHHHh---CeEEEEEECCCcccchh--HHHHHHHHHHc
Confidence 45666666666653 3443 266677666666666654 46778888888876443 77777777653
No 94
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=27.56 E-value=2.5e+02 Score=25.06 Aligned_cols=55 Identities=25% Similarity=0.036 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 024624 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (265)
Q Consensus 169 ~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLy 224 (265)
..+.+.+++.+++.+.+.|.++.-..-+..+.......+++|++.+.|- |++...
T Consensus 145 ~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~-v~~~~~ 199 (343)
T PF13458_consen 145 DPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDV-VVLAGD 199 (343)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSE-EEEEST
T ss_pred chhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCE-EEEecc
Confidence 5578888999999998877553224556677788899999999999995 444333
No 95
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=27.37 E-value=69 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEec
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPL 223 (265)
-+.-+.+++++|++.|.+.|+++|+
T Consensus 72 ~~~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 72 DEKVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEech
Confidence 3456789999999999999999986
No 96
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=27.25 E-value=2.9e+02 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCCC--------HHHHHHHHHHcCCCEEEEE
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYPF--------TEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~--------IedaL~qL~~~GidrIVvL 221 (265)
+++....+...+.|..+.+.+.|.|+.|+ +.+.++++.+.|+++|.+-
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLG 169 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34444444445567777778888877554 4567778888999976553
No 97
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=27.21 E-value=1.6e+02 Score=25.12 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCCEEEEEec
Q 024624 205 EAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 205 daL~qL~~~GidrIVvLPL 223 (265)
+.++.+...++|-+|+.|.
T Consensus 46 ~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 46 EYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 4555555555555555543
No 98
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=26.36 E-value=3.1e+02 Score=25.90 Aligned_cols=52 Identities=29% Similarity=0.352 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
..++.+.+.|.+.|..+.....+....-.+.+.|++|++.+--+||++..+.
T Consensus 147 ~~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~ 198 (382)
T cd06371 147 ETAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHS 198 (382)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 3566777777777655554444444555677888899877754677776654
No 99
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.91 E-value=2.1e+02 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=35.4
Q ss_pred EEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchH
Q 024624 192 VYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG 233 (265)
Q Consensus 192 V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtg 233 (265)
|-.--||+.=+-.+.++.|++.|.|.+|+-=.|.|-.+.||+
T Consensus 120 vL~kwrYsAF~~s~Llq~lr~~grdQLIItGVyaHigcl~TA 161 (218)
T COG1535 120 VLTKWRYSAFHRSPLLQMLREKGRDQLIITGVYAHIGCLTTA 161 (218)
T ss_pred EEeeeehhhhhcChHHHHHHHcCCCcEEEeehhhhhhhhhhH
Confidence 444467877777888999999999999999999999988875
No 100
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=25.72 E-value=2.8e+02 Score=25.41 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
+++|..|- +...++++++..+ +.|+|-++++| |.|...+-...++.+.+...
T Consensus 70 ~~~vi~gv--~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~~~~~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 70 RVPVIAGT--GSNSTAEAIELTKFAEKAGADGALVVT--PYYNKPTQEGLYQHFKAIAE 124 (292)
T ss_pred CCcEEeec--CCchHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 45555543 3446777777443 45888777765 55555554444444444433
No 101
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.59 E-value=1.8e+02 Score=27.63 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=42.0
Q ss_pred hHhhhhhcCCCCc--------hHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCH--HHHHHHHHHcCCCEEEEEec
Q 024624 155 SKEGYAAIGGGSP--------LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFT--EEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 155 sa~~Y~~IGggSP--------L~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~I--edaL~qL~~~GidrIVvLPL 223 (265)
+.-+|+.-|-+|- =|+++.+.+ .+-|..- .+.+|..|..-+.||. +.-|+++++.|+.-|.=+|.
T Consensus 43 nsGrfR~~G~~SlagllpygnaN~iv~em~---~eiLp~v-~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPT 117 (268)
T PF09370_consen 43 NSGRFRMAGRGSLAGLLPYGNANEIVMEMA---REILPVV-KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPT 117 (268)
T ss_dssp HHHHHHHTT--GGGGGBTEEEHHHHHHHHH---HHHGGG--SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-
T ss_pred cchhHhhCCCcchhhhhcccCHhHHHHHHH---Hhhhhhc-cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCc
Confidence 3568888886663 266666666 4445432 3578999999999997 88999999999999988774
No 102
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=25.30 E-value=2.1e+02 Score=19.88 Aligned_cols=31 Identities=26% Similarity=0.162 Sum_probs=19.0
Q ss_pred ceEEEeEecCCCCHHHHHHHHH-HcCCCEEEE
Q 024624 190 VNVYVGMRYWYPFTEEAVQQIK-RDRITRLVV 220 (265)
Q Consensus 190 ~~V~~AMrY~~P~IedaL~qL~-~~GidrIVv 220 (265)
+.|.+|---..--.++++++|+ ..|.+-+|+
T Consensus 44 yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~vv 75 (76)
T PF05036_consen 44 YRVRVGPFSSREEAEAALRKLKKAAGPDAFVV 75 (76)
T ss_dssp EEEEECCECTCCHHHHHHHHHHHHHTS--EEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhHhhCCCCEEE
Confidence 4666655555555677788888 677776554
No 103
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.99 E-value=2.7e+02 Score=20.06 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLP 222 (265)
....++..+.+.|...|. .|.+ -+....+...++.....|+.-++++-
T Consensus 12 ~~~~~a~~~~~~Lr~~g~--~v~~--d~~~~~~~~~~~~a~~~g~~~~iiig 59 (91)
T cd00860 12 EHLDYAKEVAKKLSDAGI--RVEV--DLRNEKLGKKIREAQLQKIPYILVVG 59 (91)
T ss_pred hHHHHHHHHHHHHHHCCC--EEEE--ECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 345677788888876553 3333 33467889999988889999777765
No 104
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.95 E-value=1.5e+02 Score=27.82 Aligned_cols=56 Identities=7% Similarity=0.053 Sum_probs=34.4
Q ss_pred ecCCCCHHH---HHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeecc
Q 024624 197 RYWYPFTEE---AVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASS 258 (265)
Q Consensus 197 rY~~P~Ied---aL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~ 258 (265)
.=+.|.+++ +.+++.+.|+++||+|++.-.-|.| +.- ....++.....+++++++.
T Consensus 60 ~TSqPs~~~~~~~~~~l~~~g~~~vi~i~iSs~LSgt----y~~--a~~a~~~~~~~~v~viDS~ 118 (282)
T COG1307 60 KTSQPSPGEFEELFEKLLQKGYDEVISIHISSGLSGT----YQS--AQLAAELVEGAKVHVIDSK 118 (282)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCcEEEEEEcCCCccHH----HHH--HHHHHHhccCceEEEEcCc
Confidence 347888855 4557777899999999998776543 211 1112222222577887764
No 105
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.91 E-value=1.4e+02 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCC
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~Gid 216 (265)
+.|.+.+...+.. +.+.-|... -....+.+.++++.+.|+-
T Consensus 44 ~~~~~~i~~l~~~-~vdgiii~~--~~~~~~~~~l~~~~~~~ip 84 (271)
T cd06312 44 ADMARLIEAAIAA-KPDGIVVTI--PDPDALDPAIKRAVAAGIP 84 (271)
T ss_pred HHHHHHHHHHHHh-CCCEEEEeC--CChHHhHHHHHHHHHCCCe
Confidence 3455556555443 333223222 1222345677888877765
No 106
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.88 E-value=1.8e+02 Score=27.34 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCceEEEe--EecCCCCHHHHHHHHHHcCCCEEEEEecCCCc
Q 024624 175 QAQALKTALEAKNLPVNVYVG--MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF 227 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~A--MrY~~P~IedaL~qL~~~GidrIVvLPLyPQY 227 (265)
..++++. +.+.|..+.|... .+...-.+++.++.+.+.|++.+.+.|.||+.
T Consensus 151 ~l~~I~~-l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 151 AVEAIRE-AKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHH-HHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 3344443 3344544433322 13444568888899999999999999999865
No 107
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.87 E-value=1.8e+02 Score=28.39 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=30.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhC---CCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEEE
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAK---NLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~---g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIVv 220 (265)
+|||.|..-- .+|.+.|-+.+.+. ....++.+ .- .| ..++.++.|++.|+++|-+
T Consensus 68 ~GGGTPs~l~-~~~l~~ll~~i~~~~~~~~~~eiti--E~-nP~~~~~e~l~~l~~~GvnRiSi 127 (390)
T PRK06582 68 FGGGTPSLMN-PVIVEGIINKISNLAIIDNQTEITL--ET-NPTSFETEKFKAFKLAGINRVSI 127 (390)
T ss_pred ECCCccccCC-HHHHHHHHHHHHHhCCCCCCCEEEE--Ee-CCCcCCHHHHHHHHHCCCCEEEE
Confidence 4999995422 23333333333321 11223333 22 44 3389999999999998744
No 108
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=24.85 E-value=2.6e+02 Score=30.82 Aligned_cols=71 Identities=14% Similarity=0.365 Sum_probs=37.1
Q ss_pred eEEEeEecCCCCHHHHHH---------HHHH-cCCCEEEEEecCCCccc--cchHHHHHHHHH---------------HH
Q 024624 191 NVYVGMRYWYPFTEEAVQ---------QIKR-DRITRLVVLPLYPQFSI--STTGSSIRVLQN---------------IF 243 (265)
Q Consensus 191 ~V~~AMrY~~P~IedaL~---------qL~~-~GidrIVvLPLyPQYS~--sTtgS~~~~l~~---------------~l 243 (265)
..++++.++...+.+.+. +.++ +-+.--|||||.|-|-. +-.+++++++.. ++
T Consensus 587 QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~L 666 (887)
T KOG1329|consen 587 QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKAL 666 (887)
T ss_pred eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566777775555433221 1221 24566799999994433 334444333332 45
Q ss_pred HhcCCCcceEEeecccccc
Q 024624 244 RYCCVSVNWKFLASSNRFC 262 (265)
Q Consensus 244 ~~~~~~~~lrfI~s~~~~~ 262 (265)
++....+ -.+++=+|=||
T Consensus 667 ka~g~d~-~~yi~f~~lr~ 684 (887)
T KOG1329|consen 667 KAVGLDP-ADYIDFLGLRC 684 (887)
T ss_pred HHhcCCc-cccceeeeeee
Confidence 5544444 55665556555
No 109
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.68 E-value=6.6e+02 Score=24.50 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=78.1
Q ss_pred ceEEEEEccCCCC-CcCcHHHHHHHh-------cCCCCcccCchhhhhhhhHHHHHHH--hcc------chhhHhhhhhc
Q 024624 99 KVGVLLLNLGGPD-TLHDVQPFLFNL-------FADPDIIRLPRLFRFLQWPLAKLIS--VVR------APKSKEGYAAI 162 (265)
Q Consensus 99 K~aVLLvNlG~P~-s~~dV~~FL~~f-------l~D~~VI~iP~~~~~~~~~L~~iI~--~~R------~~ksa~~Y~~I 162 (265)
-..|++|-||+|- +.++|-.++..+ ++.++| .+-.--. .+-+..+.. ..+ ++ ..+.+++|
T Consensus 149 i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~I-tVsT~G~--~~~i~~l~~~~~~~LavSLha~-~~e~R~~i 224 (345)
T PRK14466 149 LTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRI-TVSTVGL--KKGLKRFLEESECHLAISLHSP-FPEQRREL 224 (345)
T ss_pred CCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceE-EEEcCCC--chHHHHHhhccCcEEEEEcCCC-CHHHHHHh
Confidence 4689999999999 568899998876 223332 2100000 000122211 011 11 12344444
Q ss_pred -C--CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHH--cCC-CEEEEEecCCCcc---ccchH
Q 024624 163 -G--GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKR--DRI-TRLVVLPLYPQFS---ISTTG 233 (265)
Q Consensus 163 -G--ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~--~Gi-drIVvLPLyPQYS---~sTtg 233 (265)
. ..=||. +..+++++...+.+..+.+++.|--+----.|-+++|.+ .|+ -+|=+||.-|.-. ..++.
T Consensus 225 ~P~~~~~~l~----~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~ 300 (345)
T PRK14466 225 MPAEKAFSIK----EIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDM 300 (345)
T ss_pred cCCccCCCHH----HHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCH
Confidence 2 112444 344555554444455677777776654444333333333 122 5789999998533 33444
Q ss_pred HHHHHHHHHHHhcCCCcceE
Q 024624 234 SSIRVLQNIFRYCCVSVNWK 253 (265)
Q Consensus 234 S~~~~l~~~l~~~~~~~~lr 253 (265)
.-++++.+.+.+.+....+|
T Consensus 301 ~~~~~F~~~L~~~gi~~tvR 320 (345)
T PRK14466 301 ARMEAFRDYLTSHGVFTTIR 320 (345)
T ss_pred HHHHHHHHHHHHCCCcEEEe
Confidence 55677888888877766554
No 110
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=24.50 E-value=4.7e+02 Score=23.72 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=23.3
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHH
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~ 241 (265)
+++|..|- +.+.++|+++..+ +.|++-++++| |.|-..|-...++.+.+
T Consensus 69 ~~~vi~gv--~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~~~~~~~~l~~~~~~ 120 (284)
T cd00950 69 RVPVIAGT--GSNNTAEAIELTKRAEKAGADAALVVT--PYYNKPSQEGLYAHFKA 120 (284)
T ss_pred CCcEEecc--CCccHHHHHHHHHHHHHcCCCEEEEcc--cccCCCCHHHHHHHHHH
Confidence 34444432 3345666666333 35777666554 44433343333333333
No 111
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=24.49 E-value=29 Score=30.28 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=25.0
Q ss_pred EEEccCCCC--------CcCcHHHHHHHhcCCCCcccCchh
Q 024624 103 LLLNLGGPD--------TLHDVQPFLFNLFADPDIIRLPRL 135 (265)
Q Consensus 103 LLvNlG~P~--------s~~dV~~FL~~fl~D~~VI~iP~~ 135 (265)
++.|-|||+ +-+||++=|..++.|+.| |+-
T Consensus 22 ~~~n~~GpeFYl~~~S~sW~eVEdkLraIl~d~~V---p~~ 59 (152)
T PF15186_consen 22 MLRNGGGPEFYLENRSLSWEEVEDKLRAILEDSQV---PRE 59 (152)
T ss_pred HHhcCCCchHHHHhccCCHHHHHHHHHHHHhCccC---CHH
Confidence 468999999 236999999999999987 753
No 112
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.39 E-value=2.1e+02 Score=27.29 Aligned_cols=54 Identities=24% Similarity=0.358 Sum_probs=30.8
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIV 219 (265)
+|||.|.. ..-++..+.+++.+.-. ...++.+ . ..| .-++.++.|++.|++++-
T Consensus 57 ~gGGtpt~l~~~~l~~ll~~i~~~~~~~-~~~eit~--e-~~p~~l~~e~l~~l~~~G~~rvs 115 (377)
T PRK08599 57 IGGGTPTALSAEQLERLLTAIHRNLPLS-GLEEFTF--E-ANPGDLTKEKLQVLKDSGVNRIS 115 (377)
T ss_pred eCCCCcccCCHHHHHHHHHHHHHhCCCC-CCCEEEE--E-eCCCCCCHHHHHHHHHcCCCEEE
Confidence 38889863 44444455555443211 1223332 2 344 458999999999988653
No 113
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=24.13 E-value=5.9e+02 Score=23.89 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEE
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRL 218 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrI 218 (265)
.+.+...+.+.+.+.+.|.++.....+..+.+.....+.++++.+.|-|
T Consensus 172 ~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v 220 (369)
T PRK15404 172 QYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFV 220 (369)
T ss_pred chhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEE
Confidence 4667778888888888776665556677778888999999999999943
No 114
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=24.06 E-value=2.7e+02 Score=24.90 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
+.++..+.+++.|.+.|.++.-......+.......+.++++.+.|-|++
T Consensus 146 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~ 195 (336)
T cd06360 146 FGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFV 195 (336)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEE
Confidence 56666777777787666443222233345677788888888888886654
No 115
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.91 E-value=4.1e+02 Score=21.75 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCC-----------------CHHHHHHHHHHcCCCEEEEEec-CCCccccchHH
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-----------------FTEEAVQQIKRDRITRLVVLPL-YPQFSISTTGS 234 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P-----------------~IedaL~qL~~~GidrIVvLPL-yPQYS~sTtgS 234 (265)
..-++++++.+++.|..+.....+.++.. .+.++++..+.-|++.+++-+- ++.....+...
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHH
Confidence 34566777777777655433333333332 2355555666679887655533 24555555555
Q ss_pred HHHHHHH
Q 024624 235 SIRVLQN 241 (265)
Q Consensus 235 ~~~~l~~ 241 (265)
..+.+.+
T Consensus 106 ~~~~~~~ 112 (213)
T PF01261_consen 106 NWERLAE 112 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 116
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=23.86 E-value=2.1e+02 Score=25.35 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCceEEEeEec-CCCCHHHHHHHHHHcCCCEEEEEec
Q 024624 188 LPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 188 ~~~~V~~AMrY-~~P~IedaL~qL~~~GidrIVvLPL 223 (265)
..+-+|+.|.. ++|.+...++.+.+.|. +-|++|-
T Consensus 47 ~~I~~Y~~~~~~~Evdt~~li~~~~~~g~-k~v~lP~ 82 (211)
T PLN02812 47 KRLCAYVSCAKLREVDTSKILSEILQNPD-KRLYVPR 82 (211)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHHHcCC-cEEEEeE
Confidence 35889999998 89999999999998872 2377774
No 117
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.71 E-value=2.3e+02 Score=27.20 Aligned_cols=51 Identities=20% Similarity=0.476 Sum_probs=29.1
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRL 218 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrI 218 (265)
+|||.|.. ..-++..+.+++.+. .+.++.+- .+| ..+|.++.|++.|+++|
T Consensus 62 ~GGGTPs~L~~~~l~~ll~~i~~~~~---~~~eitiE---~nP~~lt~e~l~~lk~~G~nri 117 (353)
T PRK05904 62 LGGGTPNCLNDQLLDILLSTIKPYVD---NNCEFTIE---CNPELITQSQINLLKKNKVNRI 117 (353)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhcC---CCCeEEEE---eccCcCCHHHHHHHHHcCCCEE
Confidence 49999965 222333334443332 12233332 244 34899999999999975
No 118
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=23.57 E-value=1.7e+02 Score=28.97 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=31.4
Q ss_pred hcCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEE
Q 024624 161 AIGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 161 ~IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIV 219 (265)
.+|||.|.. ..-++..+.|++.++- ..+.+ +.+. ..| ..++.++.|++.|++++-
T Consensus 108 ~fgGGTPs~l~~~~l~~ll~~i~~~~~~-~~~~e--~tie-~~p~~lt~e~l~~L~~~G~~rvs 167 (453)
T PRK13347 108 HWGGGTPTILNPDQFERLMAALRDAFDF-APEAE--IAVE-IDPRTVTAEMLQALAALGFNRAS 167 (453)
T ss_pred EEcCcccccCCHHHHHHHHHHHHHhCCC-CCCce--EEEE-eccccCCHHHHHHHHHcCCCEEE
Confidence 358999974 4444555555444321 11223 2222 233 358999999999988763
No 119
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.52 E-value=1.2e+02 Score=25.95 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvL 221 (265)
++|.+.+++.+.+. .+ .-+-.-.......+.++++.+.|+- +|.+
T Consensus 42 ~~q~~~i~~~i~~~-~d--~Iiv~~~~~~~~~~~l~~~~~~gIp-vv~~ 86 (257)
T PF13407_consen 42 EEQIEQIEQAISQG-VD--GIIVSPVDPDSLAPFLEKAKAAGIP-VVTV 86 (257)
T ss_dssp HHHHHHHHHHHHTT-ES--EEEEESSSTTTTHHHHHHHHHTTSE-EEEE
T ss_pred HHHHHHHHHHHHhc-CC--EEEecCCCHHHHHHHHHHHhhcCce-EEEE
Confidence 56777777776542 23 2333334445678888888888884 4443
No 120
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=23.47 E-value=5.5e+02 Score=23.12 Aligned_cols=55 Identities=15% Similarity=-0.025 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+.+..++.+++.+.+.|.++.-..-+..+.+.....+.+|++.+.| +|++..++.
T Consensus 153 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d-~i~~~~~~~ 207 (345)
T cd06338 153 FSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPD-AVVVAGHFP 207 (345)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCC-EEEECCcch
Confidence 4455666777777666543322222333556778888999888887 444555544
No 121
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=23.45 E-value=2.2e+02 Score=25.65 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecC--CCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYW--YPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~--~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
+.+..++.+++.+.+.|..+.....+.-. .......++++++.+. ++|++..++
T Consensus 172 ~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~-~vvv~~~~~ 227 (348)
T cd06350 172 YGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTA-RVIVVFGDE 227 (348)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCC-cEEEEEeCc
Confidence 56677888888887776544333333222 2357788999998887 577776665
No 122
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.37 E-value=3.1e+02 Score=24.83 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvL 221 (265)
.+..+++.+.+. .+.+.+......+-.++.++.|.+.++|-+|+.
T Consensus 19 ii~gIe~~a~~~--Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~ 63 (279)
T PF00532_consen 19 IIRGIEQEAREH--GYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA 63 (279)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHc--CCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe
Confidence 334444444433 234444444444444455555555555555444
No 123
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.22 E-value=1.9e+02 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCC
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRIT 216 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~Gid 216 (265)
.|.+.+...+.. +.+.-+.. ....+.+.+.++++.+.|+-
T Consensus 45 ~~~~~i~~l~~~-~vdgiIi~--~~~~~~~~~~~~~~~~~~iP 84 (275)
T cd06320 45 GQLSIAENMINK-GYKGLLFS--PISDVNLVPAVERAKKKGIP 84 (275)
T ss_pred HHHHHHHHHHHh-CCCEEEEC--CCChHHhHHHHHHHHHCCCe
Confidence 445555544433 33322322 22234456678888877775
No 124
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.19 E-value=3e+02 Score=24.48 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
+.+...+.+++.+.+.|..+.-...+..+.......++++++.+.+-|++
T Consensus 148 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~ 197 (334)
T cd06347 148 YSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFL 197 (334)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEE
Confidence 34455667777776655443323344556667788888888888875444
No 125
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=23.12 E-value=2.5e+02 Score=24.98 Aligned_cols=55 Identities=18% Similarity=0.041 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
.+.+..++.+++.+.+.|..+....-+..+...+...+.++++.+.+-|+ +..++
T Consensus 146 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi-~~~~~ 200 (334)
T cd06342 146 AYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVF-FGGYY 200 (334)
T ss_pred chhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEE-EcCcc
Confidence 45667778888888766644433333333456678888899888887444 44343
No 126
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=22.95 E-value=3.3e+02 Score=25.54 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEec---CCCCH-HHHHHHHHHcCCCEEEEEec---CCCccccchHHH
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRY---WYPFT-EEAVQQIKRDRITRLVVLPL---YPQFSISTTGSS 235 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY---~~P~I-edaL~qL~~~GidrIVvLPL---yPQYS~sTtgS~ 235 (265)
-|.--+.+|+..|+..+.+..|.-+..+ .+|++ +++++.|.+ .+||++-- .|.||.-|++..
T Consensus 79 aTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~---grVvIf~gGtg~P~fTTDt~AAL 147 (238)
T COG0528 79 ATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEK---GRVVIFGGGTGNPGFTTDTAAAL 147 (238)
T ss_pred HHHHHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHc---CCEEEEeCCCCCCCCchHHHHHH
Confidence 4666678899999888877788777666 78888 556665543 36777775 788776655443
No 127
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.88 E-value=2.8e+02 Score=22.60 Aligned_cols=42 Identities=10% Similarity=0.231 Sum_probs=17.1
Q ss_pred EEEEecCCCccccchHHHHHHHHHHHHhcCC-CcceEEeeccc
Q 024624 218 LVVLPLYPQFSISTTGSSIRVLQNIFRYCCV-SVNWKFLASSN 259 (265)
Q Consensus 218 IVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~-~~~lrfI~s~~ 259 (265)
|+++.+.|.+........++.+.+.+++... ...+.||+-+.
T Consensus 92 iil~~~~p~~~~~~~~~~~~~~n~~~~~~a~~~~~v~~vD~~~ 134 (171)
T cd04502 92 IAIISIKPSPARWALRPKIRRFNALLKELAETRPNLTYIDVAS 134 (171)
T ss_pred EEEEEecCCCcchhhHHHHHHHHHHHHHHHhcCCCeEEEECcH
Confidence 4554444443322222233444444443322 23456665443
No 128
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=22.71 E-value=2.7e+02 Score=25.76 Aligned_cols=53 Identities=28% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecC--CCCHHHHHHHHHHcCCCEEEEEecCC
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYW--YPFTEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~--~P~IedaL~qL~~~GidrIVvLPLyP 225 (265)
+....++.+++.+.+.|..+.....+.-. .-.+...|+++++.+ ++|++..++
T Consensus 150 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~--~vii~~~~~ 204 (389)
T cd06352 150 NCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS--RIIIMCGSS 204 (389)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc--eEEEEECCH
Confidence 45556667777776555443322223222 233566677776665 466655543
No 129
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.67 E-value=6.5e+02 Score=23.96 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred ceEEEEEccCCCC-CcCcHHHHHHHhcCC------CCccc-----CchhhhhhhhHHHHHHH---hcc------chhhHh
Q 024624 99 KVGVLLLNLGGPD-TLHDVQPFLFNLFAD------PDIIR-----LPRLFRFLQWPLAKLIS---VVR------APKSKE 157 (265)
Q Consensus 99 K~aVLLvNlG~P~-s~~dV~~FL~~fl~D------~~VI~-----iP~~~~~~~~~L~~iI~---~~R------~~ksa~ 157 (265)
-.+|.++.+|+|- .+++|..+++.+-.. .+-|. +|+. +..++. ..+ ++ ..+
T Consensus 149 v~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~-------i~~L~~~~l~~~LaiSL~a~-~~e 220 (343)
T PRK14469 149 VGNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEK-------IIQLAEEGLDVKLALSLHAP-TNF 220 (343)
T ss_pred cCeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHH-------HHHHHhhCCCcEEEEEeCCC-CHH
Confidence 3689999999999 567788887765321 11122 2322 122221 111 11 123
Q ss_pred hhhhc---CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecC-CCCHHH---HHHHHHHcCCCEEEEEecCCCccc-
Q 024624 158 GYAAI---GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEE---AVQQIKRDRITRLVVLPLYPQFSI- 229 (265)
Q Consensus 158 ~Y~~I---GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~-~P~Ied---aL~qL~~~GidrIVvLPLyPQYS~- 229 (265)
.|+.+ ..+.++.++- +++++.....+..+.+.+.+--+ .-..+| ..+-++..++ +|-++|.-|....
T Consensus 221 ~r~~i~p~~~~~~l~~Il----~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~-~VnLIpynp~~~~~ 295 (343)
T PRK14469 221 KRDQIVPLNKKYSIEEII----NAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKV-FVNLIPVNPTVPGL 295 (343)
T ss_pred HHHhhcCcCCCCCHHHHH----HHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCc-EEEEEecCCCCccC
Confidence 34443 3345555433 33443333333344545543333 222333 3333333343 5788887775432
Q ss_pred -cchHHHHHHHHHHHHhcCCCcceE
Q 024624 230 -STTGSSIRVLQNIFRYCCVSVNWK 253 (265)
Q Consensus 230 -sTtgS~~~~l~~~l~~~~~~~~lr 253 (265)
......++.+.+.+.+.+....+|
T Consensus 296 ~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 296 EKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 233445667777787766655444
No 130
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.57 E-value=2.2e+02 Score=23.39 Aligned_cols=24 Identities=4% Similarity=0.130 Sum_probs=11.9
Q ss_pred HHHHHHHHcCC-CEEEEEecCCCcc
Q 024624 205 EAVQQIKRDRI-TRLVVLPLYPQFS 228 (265)
Q Consensus 205 daL~qL~~~Gi-drIVvLPLyPQYS 228 (265)
..++++++.+- -+|+++.+.|.+.
T Consensus 97 ~li~~i~~~~~~~~iil~t~~p~~~ 121 (188)
T cd01827 97 TMIDSFQALPSKPKIYICYPIPAYY 121 (188)
T ss_pred HHHHHHHHHCCCCeEEEEeCCcccc
Confidence 44444444332 3566666666543
No 131
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=22.46 E-value=2e+02 Score=27.69 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=30.0
Q ss_pred cCCCCchHHHHH---HHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEEE
Q 024624 162 IGGGSPLRKITD---EQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 162 IGggSPL~~~T~---~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIVv 220 (265)
+|||.|..--.+ +..+.+++.++- ..+.++.+ ...| ...+-++.|++.|+++|-+
T Consensus 61 ~GGGTPs~l~~~~L~~ll~~i~~~f~~-~~~~eit~---E~~P~~i~~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 61 FGGGTPSLMQPETVAALLDAIARLWPV-ADDIEITL---EANPTSVEAGRFRGYRAAGVNRVSL 120 (380)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCC-CCCccEEE---EECcCcCCHHHHHHHHHcCCCEEEE
Confidence 399999753333 333333333321 11223332 2244 3368899999999998754
No 132
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.24 E-value=2.1e+02 Score=29.02 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=36.2
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCC--HHHHHHHHHHcCCCEEEEEecCCCccc
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLPLYPQFSI 229 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~--IedaL~qL~~~GidrIVvLPLyPQYS~ 229 (265)
+|||.|.. +.-++..+.+.+.+. +......+.+..+.|- .++.++.|++.|+++|- +=||-..
T Consensus 224 fGGGTPt~L~~~~L~~Ll~~i~~~f~--~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RIS---IGvQS~~ 291 (488)
T PRK08207 224 FGGGTPTSLTAEELERLLEEIYENFP--DVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRIS---INPQTMN 291 (488)
T ss_pred EeCCCccCCCHHHHHHHHHHHHHhcc--ccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEE---EcCCcCC
Confidence 38999964 333334444433321 1111124445556664 49999999999999744 5666443
No 133
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=21.92 E-value=4.2e+02 Score=23.95 Aligned_cols=51 Identities=12% Similarity=-0.057 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvL 221 (265)
+.+..++.+++.+.+.|.++....-+..........+.++++.+.|-|++.
T Consensus 144 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~ 194 (333)
T cd06331 144 WPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLST 194 (333)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEe
Confidence 666777777777776664443333344455667777888888888754443
No 134
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.87 E-value=3e+02 Score=27.01 Aligned_cols=37 Identities=8% Similarity=-0.027 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHH
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKR 212 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~ 212 (265)
.+-.|.+.|.+.|.++ +.++.....+..++.++++.+
T Consensus 311 ~~~~l~~~L~elG~~~-~~v~~~~~~~~~~~~l~~~~~ 347 (429)
T cd03466 311 FVVAITRFVLENGMVP-VLIATGSESKKLKEKLEEDLK 347 (429)
T ss_pred HHHHHHHHHHHCCCEE-EEEEeCCCChHHHHHHHHHHH
Confidence 4555555555544433 344455555555666655443
No 135
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.77 E-value=3.1e+02 Score=24.59 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=33.2
Q ss_pred CceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCc
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF 227 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQY 227 (265)
+++|.+|.-=..|+..+..+..++.|.+-++-+||-|+-
T Consensus 20 p~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~ 58 (213)
T PF04748_consen 20 PFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKG 58 (213)
T ss_dssp STTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TT
T ss_pred CCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCC
Confidence 578899988888999999999999999999999999997
No 136
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.76 E-value=2e+02 Score=24.68 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
+.|.+.+++.+.. +.+.-+..+ -..+.+.+.++++.+.|+.-|.+
T Consensus 42 ~~~~~~~~~~~~~-~vdgiii~~--~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 42 NKQLSDVEDFITK-KVDAIVLSP--VDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred HHHHHHHHHHHHc-CCCEEEEcC--CChhhhHHHHHHHHHCCCCEEEE
Confidence 3455566655543 334333322 12233466788888888774443
No 137
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.71 E-value=2.7e+02 Score=24.71 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH-HHHHHHhcCCCc-ceEEeeccc
Q 024624 201 PFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV-LQNIFRYCCVSV-NWKFLASSN 259 (265)
Q Consensus 201 P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~-l~~~l~~~~~~~-~lrfI~s~~ 259 (265)
|--.+-.+++++.|+|.|+++..- |. ++++..+..-.. +++||...|
T Consensus 59 PgY~~~~d~f~~kGVD~I~cVSVN------------D~FVm~AWak~~g~~~~I~fi~Dg~ 107 (165)
T COG0678 59 PGYLELADEFKAKGVDEIYCVSVN------------DAFVMNAWAKSQGGEGNIKFIPDGN 107 (165)
T ss_pred ccHHHHHHHHHHcCCceEEEEEeC------------cHHHHHHHHHhcCCCccEEEecCCC
Confidence 556677788999999999998654 33 334444443333 888888877
No 138
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.64 E-value=2.2e+02 Score=27.39 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=30.6
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
+|||.|.. +.-++..+.+++.++- ..+.+|.+-.+ ..-..++-++.|++.|+++|-+
T Consensus 64 ~GGGtPs~l~~~~l~~ll~~l~~~~~~-~~~~eit~e~n-p~~l~~e~l~~Lk~~Gv~risi 123 (378)
T PRK05660 64 IGGGTPSLFSAEAIQRLLDGVRARLPF-APDAEITMEAN-PGTVEADRFVGYQRAGVNRISI 123 (378)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCC-CCCcEEEEEeC-cCcCCHHHHHHHHHcCCCEEEe
Confidence 48999986 3334444444444321 11223322111 1223478889999999887654
No 139
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=21.60 E-value=2e+02 Score=28.34 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=30.1
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIV 219 (265)
||||.|.. ..-++..+.+++.++- ..+.++.+ . ..| ..++.++.|++.|+++|-
T Consensus 108 ~gGGtPs~l~~~~l~~ll~~l~~~~~~-~~~~e~ti--e-~np~~lt~e~l~~l~~aG~~ris 166 (453)
T PRK09249 108 WGGGTPTFLSPEQLRRLMALLREHFNF-APDAEISI--E-IDPRELDLEMLDALRELGFNRLS 166 (453)
T ss_pred ECCcccccCCHHHHHHHHHHHHHhCCC-CCCCEEEE--E-ecCCcCCHHHHHHHHHcCCCEEE
Confidence 58899875 3333344444433321 11223332 2 244 458999999999988654
No 140
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.43 E-value=2e+02 Score=27.29 Aligned_cols=109 Identities=28% Similarity=0.382 Sum_probs=56.2
Q ss_pred eEEEEEccCCCCCcCcHHHHHHHhc-CCCCcccCchhhhhhhhHHH--HHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624 100 VGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (265)
Q Consensus 100 ~aVLLvNlG~P~s~~dV~~FL~~fl-~D~~VI~iP~~~~~~~~~L~--~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (265)
--|-.+-.|-|+ ++...++++.+. ++-++|++.-+ +-.|++ ..|.. .+=+.+.+| +|-+++
T Consensus 18 a~i~yit~GdP~-~e~s~e~i~~L~~~GaD~iELGvP---fSDPvADGP~Iq~-------A~~rAL~~g-----~t~~~~ 81 (265)
T COG0159 18 ALIPYVTAGDPD-LETSLEIIKTLVEAGADILELGVP---FSDPVADGPTIQA-------AHLRALAAG-----VTLEDT 81 (265)
T ss_pred CeEEEEeCCCCC-HHHHHHHHHHHHhCCCCEEEecCC---CCCcCccCHHHHH-------HHHHHHHCC-----CCHHHH
Confidence 345666666665 223334444432 34577775311 134555 23332 222333222 333334
Q ss_pred HHHHHHHHhCCCCceEEEeEecCCCC----HHHHHHHHHHcCCCEEEEEecCC
Q 024624 177 QALKTALEAKNLPVNVYVGMRYWYPF----TEEAVQQIKRDRITRLVVLPLYP 225 (265)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~AMrY~~P~----IedaL~qL~~~GidrIVvLPLyP 225 (265)
-.+-+.+.+.+.+++ .+-|.|.+|- ++.-++++++.|++-+++.=|=|
T Consensus 82 lel~~~~r~~~~~~P-ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ 133 (265)
T COG0159 82 LELVEEIRAKGVKVP-IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPP 133 (265)
T ss_pred HHHHHHHHhcCCCCC-EEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCCh
Confidence 444445544444444 3458898884 45566688889999877654433
No 141
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.34 E-value=68 Score=27.69 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=35.8
Q ss_pred CCCcccCCce--eeeccceeecCccccccccccccCCceEEEEEccCCCCCcC--cHHHHHHHhc
Q 024624 64 GPVQRRNPAG--ICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLH--DVQPFLFNLF 124 (265)
Q Consensus 64 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~K~aVLLvNlG~P~s~~--dV~~FL~~fl 124 (265)
-|..||.+.- |.+..+..-+...+ -.|+.+.++-.|+|..-+|.+++ |++||-.++.
T Consensus 32 ~pehkr~~~~ld~eki~~kakdpedi----l~mskkgktlmlfv~v~~psqp~~kd~rpftee~t 92 (164)
T KOG4357|consen 32 KPEHKRKPAPLDFEKIDAKAKDPEDI----LKMSKKGKTLMLFVGVSDPSQPDEKDIRPFTEEIT 92 (164)
T ss_pred cccccCCCCCCChhhcCcccCChHHH----HHHhhcCceEEEEEEecCCCCCChhhccchhHHHH
Confidence 3666775443 55554443222111 13555667888889999999874 9999988854
No 142
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.99 E-value=3.5e+02 Score=25.31 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=26.8
Q ss_pred HhCCCCceEEEeEecCCC--------CHHHHHHHHHHcCCCEEEE
Q 024624 184 EAKNLPVNVYVGMRYWYP--------FTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 184 ~~~g~~~~V~~AMrY~~P--------~IedaL~qL~~~GidrIVv 220 (265)
.+.|..+.+++.|.++.| ++.+.++++.+.|+++|.+
T Consensus 130 k~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (287)
T PRK05692 130 KQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL 174 (287)
T ss_pred HHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 345666777777777766 4577788888999997654
No 143
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.84 E-value=3.4e+02 Score=24.81 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHh-----CCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 170 KITDEQAQALKTALEA-----KNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~-----~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
++..+|.+++.+..-+ ....+-+|+-|.=++=-+.+.|+++-++| +.|.+|-|-+
T Consensus 25 e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~g--K~vFiP~~~~ 84 (200)
T KOG3093|consen 25 EIIARQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDG--KEVFIPRCTH 84 (200)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcC--CeEEeeeeec
Confidence 3556677777766422 23568899999988888999999999998 6688887743
No 144
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.81 E-value=2.2e+02 Score=27.22 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCC
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCV 248 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~ 248 (265)
+.|.|+|+++++.++ ..++|+|.|- .+|=.-.+..+.++..+.+.
T Consensus 131 ~~p~IKE~vR~~I~~-A~kVIAIVMD----~FTD~dIf~DLleAa~kR~V 175 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQ-AQKVIAIVMD----VFTDVDIFCDLLEAANKRGV 175 (284)
T ss_pred CCCCHHHHHHHHHHH-hcceeEEEee----ccccHHHHHHHHHHHHhcCC
Confidence 456999999999875 5789999997 56777777777777655444
No 145
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=20.77 E-value=57 Score=22.81 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=10.9
Q ss_pred EeEecCCCCHHHHHHHH
Q 024624 194 VGMRYWYPFTEEAVQQI 210 (265)
Q Consensus 194 ~AMrY~~P~IedaL~qL 210 (265)
.|++|-+|.++++++++
T Consensus 31 ~GF~F~~p~l~~AL~~l 47 (48)
T PF08338_consen 31 AGFQFRYPTLEEALRDL 47 (48)
T ss_dssp TT---S-SSHHHHHHH-
T ss_pred CCCcccCCCHHHHHhcc
Confidence 57899999999999976
No 146
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=20.74 E-value=2.3e+02 Score=24.43 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCCC--HHHHHHHHHHcCCC
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRIT 216 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~--IedaL~qL~~~Gid 216 (265)
+.|.+.++..+.. +.+--+..+. ...+. -.+.++++.+.|+.
T Consensus 42 ~~~~~~i~~l~~~-~vdgii~~~~-~~~~~~~~~~~~~~~~~~~ip 85 (273)
T cd01541 42 ERERKCLENMLSQ-GIDGLIIEPT-KSALPNPNIDLYLKLEKLGIP 85 (273)
T ss_pred HHHHHHHHHHHHc-CCCEEEEecc-ccccccccHHHHHHHHHCCCC
Confidence 4456666665543 3333332221 11111 23566777777775
No 147
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.73 E-value=2.4e+02 Score=27.49 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=30.1
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHhCCCCceEEEeEecCCC--CHHHHHHHHHHcCCCEEEE
Q 024624 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P--~IedaL~qL~~~GidrIVv 220 (265)
+|||.|-. ..-++..+.|.+.++ ......+.+. ..| ..++-++.|++.|+++|-+
T Consensus 72 ~GGGTps~l~~~~l~~ll~~i~~~~~---~~~~~eit~E-~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 72 FGGGTPSLLSVEQLERILTTLDQRFG---IAPDAEISLE-IDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred ECCCccccCCHHHHHHHHHHHHHhCC---CCCCCEEEEE-eCCCcCCHHHHHHHHHCCCCEEEE
Confidence 48888874 333334444443332 1111233333 334 3478899999999987654
No 148
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=20.58 E-value=2.9e+02 Score=25.26 Aligned_cols=53 Identities=11% Similarity=-0.049 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecC
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLy 224 (265)
+.+..++..++.+.+.|.++.-...+..+.......+.++++.+.|-|+ +..+
T Consensus 144 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~-~~~~ 196 (334)
T cd06356 144 FGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVM-SILV 196 (334)
T ss_pred hhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEE-Eecc
Confidence 5566777777777776655444455666777888888888888887444 4444
No 149
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.54 E-value=2.5e+02 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCE
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITR 217 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~Gidr 217 (265)
+.|.+.++..+. .+.+..+.. +.+..++.++++.+.|+-=
T Consensus 42 ~~~~~~i~~l~~-~~vdgiii~----~~~~~~~~~~~l~~~~ipv 81 (268)
T cd06298 42 EKELKVLNNLLA-KQVDGIIFM----GGKISEEHREEFKRSPTPV 81 (268)
T ss_pred HHHHHHHHHHHH-hcCCEEEEe----CCCCcHHHHHHHhcCCCCE
Confidence 445566655443 333433332 2233466778887777653
No 150
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=20.44 E-value=3.3e+02 Score=24.88 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvL 221 (265)
+.+...+.+++.+.+.|.++.....+.-+.......+.++++.+.|-|++.
T Consensus 148 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~V~~~ 198 (333)
T cd06328 148 FGRDGVAAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQRLLDALKKVLFVI 198 (333)
T ss_pred ccHHHHHHHHHHHHhCCCEEeeeeeCCCCCcchHHHHHHHHhcCCCEEEEE
Confidence 556677778888877775554445555566678888999999999866544
No 151
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.34 E-value=2.3e+02 Score=24.51 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
+|.+.+.... ..+.+.-+..+. ..+...+.++++++.|+--+++
T Consensus 43 ~~~~~i~~~~-~~~~Dgiii~~~--~~~~~~~~i~~~~~~~iPvV~~ 86 (282)
T cd06318 43 KQIADVEDLL-TRGVNVLIINPV--DPEGLVPAVAAAKAAGVPVVVV 86 (282)
T ss_pred HHHHHHHHHH-HcCCCEEEEecC--CccchHHHHHHHHHCCCCEEEe
Confidence 3444455443 334443333221 1234456778888878774444
No 152
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.29 E-value=6.9e+02 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCc
Q 024624 201 PFTEEAVQQIKRDRITRLVVLPLYPQF 227 (265)
Q Consensus 201 P~IedaL~qL~~~GidrIVvLPLyPQY 227 (265)
|..++-+++|++.|++ +++-+.|.-
T Consensus 74 Pdp~~mi~~Lh~~G~k--~v~~v~P~~ 98 (292)
T cd06595 74 PDPEKLLQDLHDRGLK--VTLNLHPAD 98 (292)
T ss_pred CCHHHHHHHHHHCCCE--EEEEeCCCc
Confidence 8889999999999997 556667764
No 153
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=20.25 E-value=3e+02 Score=23.67 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=41.7
Q ss_pred CcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHHHHHHH
Q 024624 114 HDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALE 184 (265)
Q Consensus 114 ~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~ 184 (265)
+.+.+|...+..++.|-.+|.| .-++..|+.+ +-+|...| .-||.+ +.-+.|.++|+
T Consensus 70 ~~indyvsrYRr~~~v~g~~SF-ttm~TALNsL---------AGHY~sy~-~rPlPe---klk~Rl~~El~ 126 (135)
T TIGR03044 70 QLINDYISRYRRRPRVNGLSSF-TTMQTALNSL---------AGHYKSYA-NRPLPE---KLKERLEKELK 126 (135)
T ss_pred HHHHHHHHHhcCCCCcCCcccH-HHHHHHHHHH---------HHHhccCC-CCCCCH---HHHHHHHHHHH
Confidence 4788999999999999988864 3445556654 78999997 688873 44555555554
No 154
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.04 E-value=2.4e+02 Score=23.77 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=49.2
Q ss_pred CcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHHHHHHHHHHhCCC-CceEEEeE--ecCCCCHH
Q 024624 128 DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGM--RYWYPFTE 204 (265)
Q Consensus 128 ~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~-~~~V~~AM--rY~~P~Ie 204 (265)
.|++++.. .+...++...+ .+.=..|| -|-|+..|......+.++|.+.+. +..|.+|= -..++-.+
T Consensus 31 eVi~LG~~-----v~~e~~v~aa~----~~~adiVg-lS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~ 100 (134)
T TIGR01501 31 NVVNLGVL-----SPQEEFIKAAI----ETKADAIL-VSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFP 100 (134)
T ss_pred EEEECCCC-----CCHHHHHHHHH----HcCCCEEE-EecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhH
Confidence 57776521 23455554321 11222334 477777777778888888888764 45566662 23344455
Q ss_pred HHHHHHHHcCCCEEE
Q 024624 205 EAVQQIKRDRITRLV 219 (265)
Q Consensus 205 daL~qL~~~GidrIV 219 (265)
+..+++++.|++++.
T Consensus 101 ~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 101 DVEKRFKEMGFDRVF 115 (134)
T ss_pred HHHHHHHHcCCCEEE
Confidence 567789999999764
Done!