Query 024624
Match_columns 265
No_of_seqs 163 out of 1166
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcn_A Ferrochelatase, mitocho 100.0 5.5E-45 1.9E-49 344.5 19.3 158 97-259 2-164 (359)
2 1lbq_A Ferrochelatase; rossman 100.0 1E-44 3.4E-49 342.7 18.5 160 96-258 4-168 (362)
3 2h1v_A Ferrochelatase; rossman 100.0 1E-37 3.5E-42 287.8 15.3 143 97-258 3-147 (310)
4 2xvy_A Chelatase, putative; me 98.8 1.9E-08 6.4E-13 89.3 9.0 89 163-257 16-120 (269)
5 2xwp_A Sirohydrochlorin cobalt 98.3 1.8E-06 6.3E-11 77.0 9.8 88 163-255 9-110 (264)
6 3lyh_A Cobalamin (vitamin B12) 98.3 3.9E-06 1.3E-10 66.6 9.0 78 162-242 11-89 (126)
7 2xws_A Sirohydrochlorin cobalt 98.2 2.6E-06 8.9E-11 67.6 7.1 74 162-239 9-84 (133)
8 1tjn_A Sirohydrochlorin cobalt 98.2 2.3E-06 7.9E-11 71.1 6.6 75 162-240 30-106 (156)
9 2jh3_A Ribosomal protein S2-re 98.2 4.8E-07 1.6E-11 88.3 2.1 69 162-233 9-82 (474)
10 2xwp_A Sirohydrochlorin cobalt 97.2 0.00065 2.2E-08 60.4 6.9 61 163-227 144-204 (264)
11 2xvy_A Chelatase, putative; me 96.4 0.0041 1.4E-07 54.8 5.9 60 163-226 153-212 (269)
12 2h1v_A Ferrochelatase; rossman 95.5 0.066 2.2E-06 48.9 9.7 87 166-260 194-292 (310)
13 3hcn_A Ferrochelatase, mitocho 94.5 0.27 9.2E-06 46.3 10.9 94 164-260 208-309 (359)
14 1lbq_A Ferrochelatase; rossman 92.9 0.19 6.4E-06 47.2 6.8 58 164-223 213-275 (362)
15 2jh3_A Ribosomal protein S2-re 84.8 1.4 5E-05 42.7 6.4 53 174-229 155-218 (474)
16 4b4o_A Epimerase family protei 63.0 26 0.00088 29.8 7.8 36 99-136 211-248 (298)
17 1t5b_A Acyl carrier protein ph 56.1 74 0.0025 25.2 9.3 74 165-242 9-112 (201)
18 1o97_C Electron transferring f 52.0 58 0.002 28.8 8.4 51 195-246 61-111 (264)
19 3lub_A Putative creatinine ami 47.2 34 0.0012 30.1 6.1 53 171-223 46-119 (254)
20 3fkr_A L-2-keto-3-deoxyarabona 47.0 95 0.0032 27.8 9.1 53 188-244 76-134 (309)
21 2ehh_A DHDPS, dihydrodipicolin 43.7 1.6E+02 0.0054 25.9 10.0 54 188-245 68-124 (294)
22 3qze_A DHDPS, dihydrodipicolin 43.4 1.5E+02 0.0052 26.5 9.9 54 188-245 91-147 (314)
23 2wkj_A N-acetylneuraminate lya 43.0 1.4E+02 0.0049 26.4 9.7 54 188-245 79-135 (303)
24 3e96_A Dihydrodipicolinate syn 43.0 80 0.0027 28.3 8.0 53 188-245 80-135 (316)
25 3cpr_A Dihydrodipicolinate syn 42.8 1.7E+02 0.0057 26.1 10.0 54 188-245 84-140 (304)
26 2ftp_A Hydroxymethylglutaryl-C 42.7 47 0.0016 29.5 6.3 47 175-221 125-179 (302)
27 3l21_A DHDPS, dihydrodipicolin 42.5 1.4E+02 0.0048 26.6 9.5 53 187-243 82-137 (304)
28 3flu_A DHDPS, dihydrodipicolin 42.5 1.7E+02 0.0056 25.9 9.9 54 188-245 75-131 (297)
29 1f6k_A N-acetylneuraminate lya 42.4 1.5E+02 0.0053 26.0 9.7 53 188-244 72-127 (293)
30 2yxg_A DHDPS, dihydrodipicolin 42.4 1.5E+02 0.0052 26.0 9.6 54 188-245 68-124 (289)
31 3daq_A DHDPS, dihydrodipicolin 41.5 1.6E+02 0.0055 25.9 9.7 53 188-244 70-125 (292)
32 2ojp_A DHDPS, dihydrodipicolin 41.3 1.4E+02 0.0048 26.3 9.2 52 189-244 70-124 (292)
33 2yxb_A Coenzyme B12-dependent 40.8 48 0.0016 26.9 5.6 105 99-219 18-126 (161)
34 1xky_A Dihydrodipicolinate syn 40.1 1.7E+02 0.0058 26.0 9.6 53 188-244 80-135 (301)
35 1o5k_A DHDPS, dihydrodipicolin 39.5 1.4E+02 0.0048 26.6 9.0 52 189-244 81-135 (306)
36 1efp_B ETF, protein (electron 39.2 1E+02 0.0034 27.0 7.8 52 195-246 60-112 (252)
37 1uta_A FTSN, MSGA, cell divisi 39.0 22 0.00074 25.4 2.9 48 173-220 20-76 (81)
38 1ydo_A HMG-COA lyase; TIM-barr 38.6 46 0.0016 30.0 5.7 47 175-221 123-177 (307)
39 3nyi_A FAT acid-binding protei 37.8 81 0.0028 28.2 7.1 58 199-259 66-126 (297)
40 3d0c_A Dihydrodipicolinate syn 37.6 1.9E+02 0.0064 25.9 9.6 53 188-245 80-135 (314)
41 1x60_A Sporulation-specific N- 37.4 36 0.0012 23.8 3.9 47 173-219 20-75 (79)
42 3si9_A DHDPS, dihydrodipicolin 37.2 1.7E+02 0.0059 26.2 9.3 54 188-245 90-146 (315)
43 1efv_B Electron transfer flavo 36.5 1.1E+02 0.0037 26.9 7.6 52 195-246 63-115 (255)
44 2v9d_A YAGE; dihydrodipicolini 36.4 1.9E+02 0.0065 26.3 9.5 53 188-244 99-154 (343)
45 3m5v_A DHDPS, dihydrodipicolin 36.1 2.3E+02 0.0078 25.0 10.2 53 189-245 77-132 (301)
46 3tak_A DHDPS, dihydrodipicolin 35.1 2.3E+02 0.0078 24.9 9.6 54 188-245 69-125 (291)
47 3na8_A Putative dihydrodipicol 35.1 1.7E+02 0.0058 26.2 8.9 54 188-245 92-148 (315)
48 2vc6_A MOSA, dihydrodipicolina 34.8 2E+02 0.0069 25.2 9.2 52 189-244 69-123 (292)
49 3ih5_A Electron transfer flavo 34.6 86 0.0029 26.7 6.5 65 174-246 26-90 (217)
50 3pl5_A SMU_165, putative uncha 34.2 1E+02 0.0036 28.0 7.3 58 199-259 97-157 (320)
51 2rfg_A Dihydrodipicolinate syn 34.1 1.5E+02 0.0051 26.2 8.3 53 189-245 69-124 (297)
52 3dlo_A Universal stress protei 34.0 1.2E+02 0.004 23.3 6.8 67 172-240 76-144 (155)
53 2r8w_A AGR_C_1641P; APC7498, d 33.1 1.9E+02 0.0065 26.2 8.9 54 188-245 102-158 (332)
54 3jr7_A Uncharacterized EGV fam 32.8 74 0.0025 28.5 6.0 58 199-259 81-138 (298)
55 2hsj_A Putative platelet activ 32.8 1.3E+02 0.0043 23.6 6.9 61 203-263 111-181 (214)
56 2cw6_A Hydroxymethylglutaryl-C 31.8 80 0.0027 27.9 6.0 47 175-221 122-176 (298)
57 3fdj_A DEGV family protein; GU 31.4 1.3E+02 0.0045 26.5 7.4 57 199-259 61-117 (278)
58 3b4u_A Dihydrodipicolinate syn 31.0 2.4E+02 0.0082 24.8 9.1 54 188-245 71-128 (294)
59 1es9_A PAF-AH, platelet-activa 30.8 1.2E+02 0.0039 24.6 6.5 60 203-262 117-179 (232)
60 4dpp_A DHDPS 2, dihydrodipicol 29.7 1.8E+02 0.0062 27.0 8.3 50 188-241 127-179 (360)
61 3eb2_A Putative dihydrodipicol 29.4 2E+02 0.0067 25.5 8.2 54 188-245 72-128 (300)
62 1fxw_F Alpha2, platelet-activa 27.8 1.8E+02 0.0063 23.4 7.2 60 203-262 118-180 (229)
63 2nly_A BH1492 protein, diverge 26.9 2.8E+02 0.0096 24.3 8.6 38 189-226 27-64 (245)
64 3rpe_A MDAB, modulator of drug 26.3 3E+02 0.01 23.4 9.2 69 169-241 42-111 (218)
65 3mil_A Isoamyl acetate-hydroly 25.8 49 0.0017 26.4 3.2 23 203-226 102-124 (240)
66 3vow_A Probable DNA DC->DU-edi 25.6 33 0.0011 29.7 2.2 57 157-216 84-144 (190)
67 1pzx_A Hypothetical protein AP 25.3 1.9E+02 0.0064 25.6 7.3 58 199-259 63-123 (289)
68 3a5f_A Dihydrodipicolinate syn 25.1 2.4E+02 0.0083 24.7 8.0 47 189-239 70-119 (291)
69 1vjg_A Putative lipase from th 25.0 75 0.0026 25.3 4.2 56 204-262 120-178 (218)
70 3k6t_A Female germline-specifi 24.3 20 0.00068 25.8 0.5 45 115-163 5-50 (60)
71 4f06_A Extracellular ligand-bi 24.0 2E+02 0.0067 25.0 7.1 51 170-220 150-200 (371)
72 3v4k_A DNA DC->DU-editing enzy 23.9 89 0.003 27.2 4.7 56 157-216 98-157 (203)
73 3k9c_A Transcriptional regulat 23.9 1.6E+02 0.0054 24.5 6.3 17 205-221 57-73 (289)
74 3h5l_A Putative branched-chain 22.7 1.8E+02 0.0061 25.6 6.6 52 169-220 174-225 (419)
75 2hpv_A FMN-dependent NADH-azor 22.7 2.9E+02 0.01 22.0 8.5 30 165-194 9-41 (208)
76 3vnd_A TSA, tryptophan synthas 22.3 75 0.0026 28.2 4.0 109 98-226 17-134 (267)
77 4eyg_A Twin-arginine transloca 21.8 2.4E+02 0.0082 23.9 7.1 51 170-220 150-200 (368)
78 3hut_A Putative branched-chain 21.6 2.5E+02 0.0084 23.8 7.1 52 169-220 149-200 (358)
79 4dik_A Flavoprotein; TM0755, e 21.3 1.3E+02 0.0046 27.9 5.7 41 171-211 278-318 (410)
80 3cjp_A Predicted amidohydrolas 21.0 2E+02 0.0069 23.9 6.3 28 199-226 11-38 (272)
81 3p94_A GDSL-like lipase; serin 20.8 1.4E+02 0.0047 23.1 4.9 59 203-262 103-166 (204)
82 3i09_A Periplasmic branched-ch 20.7 2.8E+02 0.0096 23.7 7.4 50 170-219 151-200 (375)
83 2nu8_B SCS-beta, succinyl-COA 20.7 78 0.0027 29.5 3.9 78 105-214 287-365 (388)
No 1
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=100.00 E-value=5.5e-45 Score=344.52 Aligned_cols=158 Identities=39% Similarity=0.703 Sum_probs=146.9
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (265)
++|+||||||||||++++||++||+|||+|++||++|. +++|+++|+++|++|++++|+.|||||||+.+|++|+
T Consensus 2 ~~k~gVLL~nlG~P~~~~~V~~fL~~~~~d~~Vi~~P~-----~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~ 76 (359)
T 3hcn_A 2 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPI-----QNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQG 76 (359)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHHTCTTTCCCTT-----HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHccCCcccccch-----HHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 56899999999999999999999999999999999983 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC---CCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCc--c
Q 024624 177 QALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSV--N 251 (265)
Q Consensus 177 ~~L~~~L~~~g---~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~--~ 251 (265)
++|++.|++.+ .+++|++|||||+|+|+|+|++|+++|+++||+||||||||.+|||++++.+.+.+.+.++.+ .
T Consensus 77 ~~L~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~ 156 (359)
T 3hcn_A 77 EGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMK 156 (359)
T ss_dssp HHHHHHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSE
T ss_pred HHHHHHHhhhcccccCceEEEEEeeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHHHHHHHhccCCCCc
Confidence 99999998654 468999999999999999999999999999999999999999999999999999998876644 6
Q ss_pred eEEeeccc
Q 024624 252 WKFLASSN 259 (265)
Q Consensus 252 lrfI~s~~ 259 (265)
+++|++|-
T Consensus 157 ~~~i~~~~ 164 (359)
T 3hcn_A 157 WSTIDRWP 164 (359)
T ss_dssp EEEECCCT
T ss_pred eEEeCCcc
Confidence 88988763
No 2
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=100.00 E-value=1e-44 Score=342.66 Aligned_cols=160 Identities=35% Similarity=0.572 Sum_probs=148.5
Q ss_pred cCCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 96 ~~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
+++|+||||||||||++++||++||+|||+|++||++|++ | |++|+++|+++|++|++++|+.|||||||+.+|++|
T Consensus 4 ~~~k~gvLL~nlG~P~~~~~V~~fL~~~~~d~~vi~~p~~-~--~~~l~~~I~~~R~~k~~~~Y~~ig~gSPL~~~t~~q 80 (362)
T 1lbq_A 4 KRSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAK-Y--QKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQ 80 (362)
T ss_dssp -CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSS-S--HHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHHhccCCccccCCHH-H--HHHHhhhcCccchHHHHHHHHHcCCCCccHHHHHHH
Confidence 5678999999999999999999999999999999999986 3 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC---CCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcce
Q 024624 176 AQALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNW 252 (265)
Q Consensus 176 a~~L~~~L~~~g---~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~l 252 (265)
+++|++.|++.+ .+++|++|||||+|+|+|+|++|+++|+++||+||||||||.+|||++.+.+.+++.+.++.+.+
T Consensus 81 ~~~L~~~L~~~~~~~~~~~V~~amry~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~~~~i~~~l~~~~~~~~i 160 (362)
T 1lbq_A 81 ATEVCKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSI 160 (362)
T ss_dssp HHHHHHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHHHHHhhcccCCCceEEeecccCCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHHHHHHHHHHHhcccCCCc
Confidence 999999997643 47899999999999999999999999999999999999999999999999999999888776655
Q ss_pred E--Eeecc
Q 024624 253 K--FLASS 258 (265)
Q Consensus 253 r--fI~s~ 258 (265)
+ +|+.|
T Consensus 161 ~i~~i~~~ 168 (362)
T 1lbq_A 161 SWSVIDRW 168 (362)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 5 88765
No 3
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=100.00 E-value=1e-37 Score=287.84 Aligned_cols=143 Identities=27% Similarity=0.374 Sum_probs=130.9
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHHH
Q 024624 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (265)
Q Consensus 97 ~~K~aVLLvNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (265)
++|+||||||||||++++||++||+++|+|+. +|+ .|++|++++|+.|||||||+.+|++|+
T Consensus 3 ~~~~~vLl~n~G~P~~~~~v~~fL~~~~~~~~---~~~---------------~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 64 (310)
T 2h1v_A 3 RKKMGLLVMAYGTPYKEEDIERYYTHIRRGRK---PEP---------------EMLQDLKDRYEAIGGISPLAQITEQQA 64 (310)
T ss_dssp CEEEEEEEEECCCCSSGGGHHHHHHHHTTTCC---CCH---------------HHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCh---------------HHHHHHHHHHHHCCCCChhHHHHHHHH
Confidence 56899999999999999999999999999863 242 246788999999999999999999999
Q ss_pred HHHHHHHHhCCC--CceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEE
Q 024624 177 QALKTALEAKNL--PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKF 254 (265)
Q Consensus 177 ~~L~~~L~~~g~--~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrf 254 (265)
++|++.|++.++ +++|++|||||+|+|+|+|++|+++|+++|+++|||||||.+|||++.+.+.+++.+.+ .+.+++
T Consensus 65 ~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~~~-~~~i~~ 143 (310)
T 2h1v_A 65 HNLEQHLNEIQDEITFKAYIGLAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLG-GLTITS 143 (310)
T ss_dssp HHHHHHHHHHCSSEEEEEEEEESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHHHC-SCEEEE
T ss_pred HHHHHHHHhcCCCCCceEeehhcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHhCC-CCeEEE
Confidence 999999987654 79999999999999999999999999999999999999999999999999999998877 588998
Q ss_pred eecc
Q 024624 255 LASS 258 (265)
Q Consensus 255 I~s~ 258 (265)
++.|
T Consensus 144 i~~~ 147 (310)
T 2h1v_A 144 VESW 147 (310)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8876
No 4
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=98.77 E-value=1.9e-08 Score=89.35 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEec------------CCCCHHHHHHHHHHcCCCEEEEEecCCCcccc
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY------------WYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY------------~~P~IedaL~qL~~~GidrIVvLPLyPQYS~s 230 (265)
+.||.-.+..+ ..+++.+.+.+..++++|+.||.+ +.|+++++|++|.++|+++|+|+||||+
T Consensus 16 ~hGS~~~~~~~-~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l~---- 90 (269)
T 2xvy_A 16 AFGTSVEEARP-ALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHTI---- 90 (269)
T ss_dssp ECCCCCTTTTH-HHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCSS----
T ss_pred eCCCCcHHHHH-HHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEeceee----
Confidence 44554332222 334444444444457899999997 8999999999999999999999999985
Q ss_pred chHHHHHHHHHH---HHhcCC-CcceEEeec
Q 024624 231 TTGSSIRVLQNI---FRYCCV-SVNWKFLAS 257 (265)
Q Consensus 231 TtgS~~~~l~~~---l~~~~~-~~~lrfI~s 257 (265)
+|+..+.+.+. +.+... .+.+++++.
T Consensus 91 -~G~~~~di~~~~~~l~~~~~~~~~i~~~~p 120 (269)
T 2xvy_A 91 -PGEEFHGLLETAHAFQGLPKGLTRVSVGLP 120 (269)
T ss_dssp -SSHHHHHHHHHHHHHTTCTTSCSEEEEECC
T ss_pred -ccHhHHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 45567777777 554433 266776654
No 5
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=98.34 E-value=1.8e-06 Score=76.98 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=64.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeE-----------ecC--CCCHHHHHHHHHHcCCCEEEEEecCCCccc
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-----------RYW--YPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AM-----------rY~--~P~IedaL~qL~~~GidrIVvLPLyPQYS~ 229 (265)
+.||...+..++..+++.+.+.+..++++|+.|| +|+ .|+++++|++|.++|+++|+|+|||+
T Consensus 9 ~hGSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~Pl~l---- 84 (264)
T 2xwp_A 9 SFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLHI---- 84 (264)
T ss_dssp ECCCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEEECCS----
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEEeCcc----
Confidence 6678777655545566666665555689999999 444 59999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCC-cceEEe
Q 024624 230 STTGSSIRVLQNIFRYCCVS-VNWKFL 255 (265)
Q Consensus 230 sTtgS~~~~l~~~l~~~~~~-~~lrfI 255 (265)
+.|...+.+.+.+.+.+.. +.+++.
T Consensus 85 -~~G~~~~di~~~v~~~~~~~~~i~~~ 110 (264)
T 2xwp_A 85 -INGDEYEKIVREVQLLRPLFTRLTLG 110 (264)
T ss_dssp -SSSHHHHHHHHHHHHHGGGCSEEEEE
T ss_pred -cCcHHHHHHHHHHHHHHhhCCceEEe
Confidence 4566666776665554322 455554
No 6
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=98.26 E-value=3.9e-06 Score=66.65 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=58.4
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-EecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~ 240 (265)
+|.||+-... .+..+.+.+.|.+.. ..|+.| |.++.|.+++++++|.++|+++|+++|+|.....-+..-.-+.+.
T Consensus 11 v~HGS~~~~~-~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G~H~~~Dip~~~~ 87 (126)
T 3lyh_A 11 LAHGSSDARW-CETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHLRKDVPAMIE 87 (126)
T ss_dssp EECCCSCHHH-HHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHHHHHHHHHHH
T ss_pred EeCCCCCHHH-HHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHHHHcCCCEEEEEecccCCCchhhhHHHHHHH
Confidence 4778875433 345566666665544 468888 778999999999999999999999999999988766655555554
Q ss_pred HH
Q 024624 241 NI 242 (265)
Q Consensus 241 ~~ 242 (265)
++
T Consensus 88 ~~ 89 (126)
T 3lyh_A 88 RL 89 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=98.22 E-value=2.6e-06 Score=67.62 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=55.6
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-Eec-CCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHH
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVL 239 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY-~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l 239 (265)
+|.||+-.. ..+..+++.+.|.+......|++| |.| +.|++++++++| |+++|+|+|+|++++.-+....-+.+
T Consensus 9 v~HGS~~~~-~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~l~~l---g~~~v~v~Plfl~~G~h~~~di~~~~ 84 (133)
T 2xws_A 9 VGHGSQLNH-YREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTEDLPDLL 84 (133)
T ss_dssp EECSCCCHH-HHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHHHHHC---CCSEEEEEECCSSCCHHHHTHHHHHH
T ss_pred EECCCCCHH-HHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHHHHHc---CCCEEEEEeeeeCCCcchHhHHHHHH
Confidence 367777543 334556666666555456789999 788 999999999999 99999999999999887765444443
No 8
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=98.19 E-value=2.3e-06 Score=71.12 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=54.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCCCceEEEe-Eec-CCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHH
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVL 239 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A-MrY-~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l 239 (265)
+|.||+-.. ..+..+++++.|.+......|++| |.| +.|.++++|++| |+++|+|+|||++++..+....-+.+
T Consensus 30 v~HGS~~p~-~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l---G~~~VvVvPlfL~~G~h~~~DIp~~l 105 (156)
T 1tjn_A 30 VGHGSQLNH-YREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTEDLPDLL 105 (156)
T ss_dssp EECCTTSTT-HHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC---CCSEEEEEECCSSCSHHHHTHHHHHH
T ss_pred EECCCCCHH-HHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc---CCCEEEEEechhcCCchhHhHHHHHH
Confidence 366776432 233344444444443345789999 888 999999999999 99999999999999987775554444
Q ss_pred H
Q 024624 240 Q 240 (265)
Q Consensus 240 ~ 240 (265)
.
T Consensus 106 ~ 106 (156)
T 1tjn_A 106 G 106 (156)
T ss_dssp T
T ss_pred H
Confidence 3
No 9
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=98.16 E-value=4.8e-07 Score=88.32 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHhCCC-----CceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchH
Q 024624 162 IGGGSPLRKITDEQAQALKTALEAKNL-----PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG 233 (265)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~-----~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtg 233 (265)
+|.|||+...++++.++|++.|.+.+. ++.|++||..++|+|+++|++| |+++|+|+|||++++..+..
T Consensus 9 VgHGSp~~~~a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle~~PsI~eaL~~L---G~~rVvVvPLfl~~G~H~~~ 82 (474)
T 2jh3_A 9 IGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQQEPGLRQVLRTV---AYSDVTVVPVFLSEGYVTET 82 (474)
T ss_dssp EECCCSSCTHHHHHHHHHHHHHHHHHHTTCCSCSEEEEEESSSSSBTTTGGGGC---CBSEEEEEECCSCCSHHHHT
T ss_pred EeCCCCCChhHHHHHHHHHHHHHHhCCccccCCCeEEEEEcCCCCCHHHHHHHc---CcCeEEEEEEehhccHhHHH
Confidence 488999988999999999999976654 7899999888999999999999 99999999999999886653
No 10
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=97.18 E-value=0.00065 Score=60.42 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCc
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF 227 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQY 227 (265)
|.|||.. .....++++..|.+.+. .|++|+--|.|+++++++++.+.|+++|+|+|+|-.-
T Consensus 144 gHGs~~~--~~~~~~~~a~~l~~~~~--~v~~g~~e~~P~~~~~l~~l~~~G~~~v~v~P~~l~a 204 (264)
T 2xwp_A 144 GHGASHH--AFAAYACLDHMMTAQRF--PARVGAVESYPEVDILIDSLRDEGVTGVHLMPLMLVA 204 (264)
T ss_dssp ECCCSSG--GGHHHHHHHHHHHHTTC--SEEEEESSSSSCHHHHHHHHHHHTCCEEEEEECSSCC
T ss_pred ECCCCch--hhHHHHHHHHHHHhhCC--CEEEEEeCCCCCHHHHHHHHHHCCCCEEEEEeeeccc
Confidence 8888875 33445567777766552 8999987789999999999999999999999999543
No 11
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=96.42 E-value=0.0041 Score=54.79 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=44.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
|.|||. ......+.+.+.|.+.+ -.+|+|.--|.|+++++++++.+.|+++|+|+|++-.
T Consensus 153 ~HGs~~--~~~~~~~~~a~~l~~~~--~~~~~g~~e~~P~~~~~l~~l~~~G~~~v~v~P~~l~ 212 (269)
T 2xvy_A 153 GHGTPH--PADICYPGLQYYLWRLD--PDLLVGTVEGSPSFDNVMAELDVRKAKRVWLMPLMAV 212 (269)
T ss_dssp ECCCSS--GGGGHHHHHHHHHHTTC--TTEEEEESSSSSCHHHHHHHHHHHTCSEEEEEEESSS
T ss_pred ECCCCh--hhccHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHCCCCEEEEECCccc
Confidence 788986 22223345666665444 4578886558999999999999999999999999744
No 12
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=95.50 E-value=0.066 Score=48.89 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCceEEEeEec--------CCCCHHHHHHHHHHc-CCCEEEEEecCCCccccchHHHH
Q 024624 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRY--------WYPFTEEAVQQIKRD-RITRLVVLPLYPQFSISTTGSSI 236 (265)
Q Consensus 166 SPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY--------~~P~IedaL~qL~~~-GidrIVvLPLyPQYS~sTtgS~~ 236 (265)
.|-+...++-++.|.+.|.. ..+.+++.- ..|+++|+|+++.+. |+++|+|+|.. |..-......
T Consensus 194 DpY~~~~~~t~~~l~e~l~~----~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k~v~V~P~~--F~sD~lEtl~ 267 (310)
T 2h1v_A 194 DPYPDQLHESAKLIAEGAGV----SEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVG--FVADHLEVLY 267 (310)
T ss_dssp CCHHHHHHHHHHHHHHHHTC----SCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCSEEEEECTT--CCSSCHHHHT
T ss_pred CChHHHHHHHHHHHHHHcCC----CCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCceEEEECCc--ccccceeeHH
Confidence 34455566666667666642 245556533 589999999999999 99999999953 3222222221
Q ss_pred H---HHHHHHHhcCCCcceEEeecccc
Q 024624 237 R---VLQNIFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 237 ~---~l~~~l~~~~~~~~lrfI~s~~~ 260 (265)
| ...+.+.+.+ .++.++++.|.
T Consensus 268 ei~~e~~e~~~~~G--~~~~~~p~ln~ 292 (310)
T 2h1v_A 268 DNDYECKVVTDDIG--ASYYRPEMPNA 292 (310)
T ss_dssp TTTTHHHHHHHHHT--CEEECCCCCTT
T ss_pred HHHHHHHHHHHHcC--CeEEECCCCCC
Confidence 1 1223334443 45677777763
No 13
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=94.47 E-value=0.27 Score=46.25 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=59.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecC-----CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~-----~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~ 238 (265)
.|.|-....++-+++|.++|... .++.+.+==|.| .|+++|+|++|.++|+++|+|+|.. |..=-..+..|.
T Consensus 208 ~GDpY~~q~~~t~~lv~e~Lg~~-~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~P~g--FvsD~lETL~Ei 284 (359)
T 3hcn_A 208 RGDPYPQEVSATVQKVMERLEYC-NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIA--FTSDHIETLYEL 284 (359)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTTC-SCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEECTT--CCSCCCCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCC-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc--cchhhHHhHHHH
Confidence 46787777777777888777532 223333222344 7999999999999999999999963 443333333332
Q ss_pred HHH---HHHhcCCCcceEEeecccc
Q 024624 239 LQN---IFRYCCVSVNWKFLASSNR 260 (265)
Q Consensus 239 l~~---~l~~~~~~~~lrfI~s~~~ 260 (265)
-.+ .+.+..-..++.++++.|.
T Consensus 285 d~E~~~e~a~e~G~~~~~rip~LNd 309 (359)
T 3hcn_A 285 DIEYSQVLAKECGVENIRRAESLNG 309 (359)
T ss_dssp CHHHHHHHHHHTCCCEEEECCCSTT
T ss_pred HHHHHHHHHHhCCCceEEEcCCCCC
Confidence 112 2222233446888888884
No 14
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=92.88 E-value=0.19 Score=47.24 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=42.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCceEEEeEecC-----CCCHHHHHHHHHHcCCCEEEEEec
Q 024624 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~-----~P~IedaL~qL~~~GidrIVvLPL 223 (265)
.|.|-....++-++.|.+.|.-. .++.+.+-=|.+ .|+++|+|++| +.|+++|+|+|.
T Consensus 213 ~GDpY~~q~~~ta~ll~e~lg~~-~~~~~~fQSr~G~~~WL~P~t~~~l~~L-~~G~k~vvVvP~ 275 (362)
T 1lbq_A 213 TGDAYPAEVAATVYNIMQKLKFK-NPYRLVWQSQVGPKPWLGAQTAEIAEFL-GPKVDGLMFIPI 275 (362)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTTC-SCEEEEEECCCSSSCBCSCBHHHHHHHH-GGGCSCEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHHcCCC-CCEEEEEECCCCCcccCCCCHHHHHHHH-HcCCCeEEEECC
Confidence 55776666666777777777521 134433333667 69999999999 999999999994
No 15
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=84.85 E-value=1.4 Score=42.74 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCC-----------CHHHHHHHHHHcCCCEEEEEecCCCccc
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYP-----------FTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P-----------~IedaL~qL~~~GidrIVvLPLyPQYS~ 229 (265)
.+.+++.+.|.+...--.|++|+--..| ++++++++| |+++|+++|+|-.-..
T Consensus 155 ~~~~~la~~L~e~lg~~~v~vaf~s~~Pwl~P~~~wleP~l~d~l~~L---G~krVvV~P~Fl~dG~ 218 (474)
T 2jh3_A 155 AALETHAQALRERGQFAGVEVVLESREALTPESHAASAVPLSEWPSRV---EAGQAVLVPFLTHLGK 218 (474)
T ss_dssp HHHHHHHHHHHHHCCSSEEEEEECCCC---------CCEEGGGGGGGC---CSSCEEEEECSSCCCH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeCCCCCCcccccccCCHHHHHHHc---CCCeEEEEEeeccCCc
Confidence 3444444444333212357788776678 999999988 9999999999755433
No 16
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=62.96 E-value=26 Score=29.82 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=26.9
Q ss_pred ceEEEEEccCCCC--CcCcHHHHHHHhcCCCCcccCchhh
Q 024624 99 KVGVLLLNLGGPD--TLHDVQPFLFNLFADPDIIRLPRLF 136 (265)
Q Consensus 99 K~aVLLvNlG~P~--s~~dV~~FL~~fl~D~~VI~iP~~~ 136 (265)
..|+ .|+|+|+ |..|+-..+.+.+.-|.++++|.|+
T Consensus 211 ~~g~--yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~ 248 (298)
T 4b4o_A 211 VHGV--LNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAV 248 (298)
T ss_dssp CCEE--EEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHH
T ss_pred CCCe--EEEECCCccCHHHHHHHHHHHhCcCCcccCCHHH
Confidence 3564 5666666 6679999999999877778888653
No 17
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=56.07 E-value=74 Score=25.21 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=42.8
Q ss_pred CCch--HHHHHHHHHHHHHHHHhCCCCceEEEeEecCC--C-C-------------------------HHHHHHHHHHcC
Q 024624 165 GSPL--RKITDEQAQALKTALEAKNLPVNVYVGMRYWY--P-F-------------------------TEEAVQQIKRDR 214 (265)
Q Consensus 165 gSPL--~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~--P-~-------------------------IedaL~qL~~~G 214 (265)
+||- ...|+..++.+.+.+.+.|++.+|.+---+-. | + +.+.++++.+
T Consensus 9 ~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~-- 86 (201)
T 1t5b_A 9 SSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKA-- 86 (201)
T ss_dssp CCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred eCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHh--
Confidence 4666 47899999999999987653444443322221 1 1 2334556654
Q ss_pred CCEEEEEecCCCccccchHHHHHHHHHH
Q 024624 215 ITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (265)
Q Consensus 215 idrIVvLPLyPQYS~sTtgS~~~~l~~~ 242 (265)
.| .++--+|-|-.+-.+..-..+.+.
T Consensus 87 aD--~iv~~~P~y~~~~p~~lK~~iD~~ 112 (201)
T 1t5b_A 87 HD--VIVIAAPMYNFNIPTQLKNYFDLI 112 (201)
T ss_dssp CS--EEEEECCCBTTBCCHHHHHHHHHH
T ss_pred CC--EEEEEeCcccCcCCHHHHHHHHHh
Confidence 45 344456777666666554444443
No 18
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=51.98 E-value=58 Score=28.76 Aligned_cols=51 Identities=12% Similarity=-0.058 Sum_probs=39.7
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhc
Q 024624 195 GMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYC 246 (265)
Q Consensus 195 AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~ 246 (265)
+...|+|..++++++....|+|+++++- -|.|....+..+-+.+.+++++.
T Consensus 61 av~~G~~~~~~~lr~ala~GaD~vi~v~-d~~~~~~~~~~~a~~La~~i~~~ 111 (264)
T 1o97_C 61 VVSVGPDRVDESLRKCLAKGADRAVRVW-DDAAEGSDAIVVGRILTEVIKKE 111 (264)
T ss_dssp EEEESCGGGHHHHHHHHHTTCSEEEEEC-CGGGTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCchhHHHHHHHHHhcCCCEEEEEc-CcccccCCHHHHHHHHHHHHHhc
Confidence 4556777789999999999999999997 67766666666667777776654
No 19
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=47.19 E-value=34 Score=30.14 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhC-CCCceEEEeEecCC--------C------------CHHHHHHHHHHcCCCEEEEEec
Q 024624 171 ITDEQAQALKTALEAK-NLPVNVYVGMRYWY--------P------------FTEEAVQQIKRDRITRLVVLPL 223 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~-g~~~~V~~AMrY~~--------P------------~IedaL~qL~~~GidrIVvLPL 223 (265)
+.+..++++.+++.++ +.++.|.-.+.|+. | .+.|+++.+.+.|++++|++-=
T Consensus 46 ia~~ia~~~a~~l~~~~~~~~lv~P~i~yG~~s~~h~~fPGTisl~~~tl~~~l~di~~sl~~~G~rrlvivNg 119 (254)
T 3lub_A 46 LPHDIAVEAAELALSRSGVRCMVMPPVPFGAHNPGQRELPFCIHTRYATQQAILEDIVSSLHVQGFRKLLILSG 119 (254)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEECCCBCCBCCCTTTTTSTTCCBCCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEeCCccccCCCccccCcCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3444555565555443 34455555566666 2 1678888999999999999853
No 20
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=46.97 E-value=95 Score=27.79 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=35.2
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCc---cccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQF---SISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQY---S~sTtgS~~~~l~~~l~ 244 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.| ...|-...++.+.....
T Consensus 76 grvpviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--Pyy~~~~~~s~~~l~~~f~~va~ 134 (309)
T 3fkr_A 76 GRVPVIVTT--SHYSTQVCAARSLRAQQLGAAMVMAMP--PYHGATFRVPEAQIFEFYARVSD 134 (309)
T ss_dssp TSSCEEEEC--CCSSHHHHHHHHHHHHHTTCSEEEECC--SCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCchHHHHHHHHHHHHHcCCCEEEEcC--CCCccCCCCCHHHHHHHHHHHHH
Confidence 457777775 6778999988444 56999888887 666 34455555554444443
No 21
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=43.72 E-value=1.6e+02 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=36.8
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 68 grvpviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 124 (294)
T 2ehh_A 68 GRIKVIAGT--GGNATHEAVHLTAHAKEVGADGALVVV--PYYNKPTQRGLYEHFKTVAQE 124 (294)
T ss_dssp TSSEEEEEC--CCSCHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 357777664 6778999987554 56999888886 567666666655555554443
No 22
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=43.41 E-value=1.5e+02 Score=26.54 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=36.0
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..| -+...++|+++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 91 grvpViaG--vg~~st~eai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 147 (314)
T 3qze_A 91 GRIPVIAG--TGANSTREAVALTEAAKSGGADACLLVT--PYYNKPTQEGMYQHFRHIAEA 147 (314)
T ss_dssp TSSCEEEE--CCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEe--CCCcCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHh
Confidence 35677765 46778999988444 57999888876 556666665555555554443
No 23
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=43.04 E-value=1.4e+02 Score=26.45 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=36.6
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.+++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 79 grvpViaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 135 (303)
T 2wkj_A 79 GKIKLIAHV--GCVSTAESQQLAASAKRYGFDAVSAVT--PFYYPFSFEEHCDHYRAIIDS 135 (303)
T ss_dssp TTSEEEEEC--CCSSHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHhCCCCEEEecC--CCCCCCCHHHHHHHHHHHHHh
Confidence 367787774 6778999987554 46999888886 557666665555555544443
No 24
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=42.99 E-value=80 Score=28.33 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=34.4
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +. .++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 80 grvpViaGv--g~-~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 135 (316)
T 3e96_A 80 GRALVVAGI--GY-ATSTAIELGNAAKAAGADAVMIHM--PIHPYVTAGGVYAYFRDIIEA 135 (316)
T ss_dssp TSSEEEEEE--CS-SHHHHHHHHHHHHHHTCSEEEECC--CCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEe--Cc-CHHHHHHHHHHHHhcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHh
Confidence 468888887 45 8999998544 46999888773 345445555555555544443
No 25
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=42.80 E-value=1.7e+02 Score=26.06 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=36.8
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 84 grvpviaGv--g~~st~~ai~la~~A~~~Gadavlv~~--P~y~~~~~~~l~~~f~~ia~a 140 (304)
T 3cpr_A 84 DRAKLIAGV--GTNNTRTSVELAEAAASAGADGLLVVT--PYYSKPSQEGLLAHFGAIAAA 140 (304)
T ss_dssp TTSEEEEEC--CCSCHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEecC--CCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 357777764 6788999988554 56999888887 567666665555555554443
No 26
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=42.68 E-value=47 Score=29.55 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCC--------CHHHHHHHHHHcCCCEEEEE
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYP--------FTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P--------~IedaL~qL~~~GidrIVvL 221 (265)
++..+-+...+.|..+++++++-|+.| ++.+.++++.+.|++.|.+-
T Consensus 125 ~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 125 RFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLG 179 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 344444455566778888999988866 34555666678999965543
No 27
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=42.52 E-value=1.4e+02 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=35.7
Q ss_pred CCCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHH
Q 024624 187 NLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (265)
Q Consensus 187 g~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l 243 (265)
+..++|..| -+...++|+++..+ +.|+|-++++| |.|...|-...++.+....
T Consensus 82 ~grvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va 137 (304)
T 3l21_A 82 GDRARVIAG--AGTYDTAHSIRLAKACAAEGAHGLLVVT--PYYSKPPQRGLQAHFTAVA 137 (304)
T ss_dssp TTTSEEEEE--CCCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHH
Confidence 346788887 47788999998544 46999888876 5566666555555444433
No 28
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=42.47 E-value=1.7e+02 Score=25.93 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=36.1
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..| -+...++++++.. .+.|+|-++++| |.|...|-...++.+......
T Consensus 75 grvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~va~a 131 (297)
T 3flu_A 75 KRVPVIAG--TGANNTVEAIALSQAAEKAGADYTLSVV--PYYNKPSQEGIYQHFKTIAEA 131 (297)
T ss_dssp TSSCEEEE--CCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEe--CCCcCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 35777776 4678899999844 457999888876 556666655555555544443
No 29
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=42.43 E-value=1.5e+02 Score=26.03 Aligned_cols=53 Identities=13% Similarity=-0.011 Sum_probs=35.9
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+.....
T Consensus 72 grvpviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~va~ 127 (293)
T 1f6k_A 72 DQIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIA 127 (293)
T ss_dssp TSSEEEEEC--CCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEec--CCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 367777764 7778999987554 46999888886 56766665555555554443
No 30
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=42.39 E-value=1.5e+02 Score=26.01 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=36.9
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 68 gr~pviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~s~~~l~~~f~~ia~a 124 (289)
T 2yxg_A 68 GRVQVIAGA--GSNCTEEAIELSVFAEDVGADAVLSIT--PYYNKPTQEGLRKHFGKVAES 124 (289)
T ss_dssp TSSEEEEEC--CCSSHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEeC--CCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 357777764 6778999987554 46999888886 567666666665555554443
No 31
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=41.47 E-value=1.6e+02 Score=25.94 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
..++|..| -+...++++++..+ +.|+|-++++| |.|...|-...++.+.....
T Consensus 70 grvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~ia~ 125 (292)
T 3daq_A 70 KRVPVIAG--TGTNDTEKSIQASIQAKALGADAIMLIT--PYYNKTNQRGLVKHFEAIAD 125 (292)
T ss_dssp TSSCEEEE--CCCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEe--CCcccHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 45778776 46788999998544 46999888876 44555555555454444333
No 32
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=41.30 E-value=1.4e+02 Score=26.29 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=35.8
Q ss_pred CceEEEeEecCCCCHHHHHHHHHH---cCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIKR---DRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~~---~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
.++|..|- +...++++++..+. .|+|-++++| |.|...|-...++.+.....
T Consensus 70 r~pviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~s~~~l~~~f~~ia~ 124 (292)
T 2ojp_A 70 RIPVIAGT--GANATAEAISLTQRFNDSGIVGCLTVT--PYYNRPSQEGLYQHFKAIAE 124 (292)
T ss_dssp SSCEEEEC--CCSSHHHHHHHHHHTTTSSCSEEEEEC--CCSSCCCHHHHHHHHHHHHT
T ss_pred CCcEEEec--CCccHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 56777664 77789999987664 5999888876 56766666555555554433
No 33
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=40.81 E-value=48 Score=26.86 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=58.0
Q ss_pred ceEEEEEccCCCCCcCcHH-HHHHHhcCC--CCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhcCCCCchHHHHHHH
Q 024624 99 KVGVLLLNLGGPDTLHDVQ-PFLFNLFAD--PDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (265)
Q Consensus 99 K~aVLLvNlG~P~s~~dV~-~FL~~fl~D--~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (265)
+.-|||...|+ +.- |+. .++..+|.+ =.|+.++.. .+...++...+ ......|| -|=+...+..+
T Consensus 18 ~~~vlla~~~g-d~H-diG~~~va~~l~~~G~eVi~lG~~-----~p~e~lv~aa~----~~~~diV~-lS~~~~~~~~~ 85 (161)
T 2yxb_A 18 RYKVLVAKMGL-DGH-DRGAKVVARALRDAGFEVVYTGLR-----QTPEQVAMAAV----QEDVDVIG-VSILNGAHLHL 85 (161)
T ss_dssp SCEEEEEEESS-SSC-CHHHHHHHHHHHHTTCEEECCCSB-----CCHHHHHHHHH----HTTCSEEE-EEESSSCHHHH
T ss_pred CCEEEEEeCCC-Ccc-HHHHHHHHHHHHHCCCEEEECCCC-----CCHHHHHHHHH----hcCCCEEE-EEeechhhHHH
Confidence 33488888887 422 222 344444433 467766421 12344443322 23334444 24444455666
Q ss_pred HHHHHHHHHhCCC-CceEEEeEecCCCCHHHHHHHHHHcCCCEEE
Q 024624 176 AQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 176 a~~L~~~L~~~g~-~~~V~~AMrY~~P~IedaL~qL~~~GidrIV 219 (265)
...+.+.|.+.+. ++.|.+| |.|..++ .+.+.+.|+|.++
T Consensus 86 ~~~~i~~L~~~g~~~i~v~vG---G~~~~~~-~~~l~~~G~d~v~ 126 (161)
T 2yxb_A 86 MKRLMAKLRELGADDIPVVLG---GTIPIPD-LEPLRSLGIREIF 126 (161)
T ss_dssp HHHHHHHHHHTTCTTSCEEEE---ECCCHHH-HHHHHHTTCCEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEe---CCCchhc-HHHHHHCCCcEEE
Confidence 6777777777663 6889998 5565544 4567788999543
No 34
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=40.06 E-value=1.7e+02 Score=25.96 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
.+++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+.....
T Consensus 80 grvpViaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~ 135 (301)
T 1xky_A 80 KRVPVIAGT--GSNNTHASIDLTKKATEVGVDAVMLVA--PYYNKPSQEGMYQHFKAIAE 135 (301)
T ss_dssp TSSCEEEEC--CCSCHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHH
T ss_pred CCceEEeCC--CCCCHHHHHHHHHHHHhcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHH
Confidence 356777664 6778999987544 56999888876 56766666555555554443
No 35
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=39.53 E-value=1.4e+02 Score=26.59 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=34.7
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
.++|..|- +..+++++++..+ +.|+|-++++| |.|...|-...++.+.....
T Consensus 81 rvpViaGv--g~~st~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~ 135 (306)
T 1o5k_A 81 KIPVIVGA--GTNSTEKTLKLVKQAEKLGANGVLVVT--PYYNKPTQEGLYQHYKYISE 135 (306)
T ss_dssp SSCEEEEC--CCSCHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHT
T ss_pred CCeEEEcC--CCccHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 56777664 6778999987554 46999888876 55766666555555544433
No 36
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=39.18 E-value=1e+02 Score=27.02 Aligned_cols=52 Identities=8% Similarity=-0.016 Sum_probs=38.9
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEecCCCc-cccchHHHHHHHHHHHHhc
Q 024624 195 GMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF-SISTTGSSIRVLQNIFRYC 246 (265)
Q Consensus 195 AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQY-S~sTtgS~~~~l~~~l~~~ 246 (265)
+...|+|..++++++....|+|+++++..-+.| ....+..+-+.+.+++++.
T Consensus 60 av~~G~~~a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~ 112 (252)
T 1efp_B 60 AVSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAE 112 (252)
T ss_dssp EEEEESGGGHHHHHHHHHHTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHH
T ss_pred EEEeCChhHHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhc
Confidence 455567778999999988999999999866776 5555666666666666653
No 37
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=39.01 E-value=22 Score=25.43 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCC---------CceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 173 DEQAQALKTALEAKNL---------PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~---------~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
++.|+++.+.|...|. -+.|.+|---..--.+.+.++|++.|++..++
T Consensus 20 ~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~iv 76 (81)
T 1uta_A 20 AEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIR 76 (81)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCBC
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEEE
Confidence 3456666666655442 25666653223333456677777778776554
No 38
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=38.61 E-value=46 Score=29.95 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCC--------CHHHHHHHHHHcCCCEEEEE
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYP--------FTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P--------~IedaL~qL~~~GidrIVvL 221 (265)
++....+...+.|..+.+++.|.|+.| ++.++++++.+.|+++|.+-
T Consensus 123 ~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 123 ILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLG 177 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 344444455566777888888888866 45667778888999976554
No 39
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=37.77 E-value=81 Score=28.18 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=37.1
Q ss_pred CCCCHHH---HHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 199 WYPFTEE---AVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 199 ~~P~Ied---aL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
+.|+..+ +.+++.++| ++|+++++.-.-|.| ..++ ..+.+.+.+.....++++|++-+
T Consensus 66 Sqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGT-y~sA-~~aa~~~~e~~~~~~I~ViDS~~ 126 (297)
T 3nyi_A 66 SLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGS-YNSA-INAKSLVLEDYPDANICVIDSKQ 126 (297)
T ss_dssp ECCCHHHHHHHHHHHHTTT-CCEEEEESCTTTCSH-HHHH-HHHHHHHHHHCTTCCEEEEECSC
T ss_pred cCCCHHHHHHHHHHHHHCC-CeEEEEECCCcHhHH-HHHH-HHHHHHHHhhCCCCeEEEEeCCc
Confidence 5888855 455666788 999999998776542 2222 33334443433345789998765
No 40
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=37.62 E-value=1.9e+02 Score=25.88 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.+++|..|- +. +++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 80 grvpViaGv--g~-st~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 135 (314)
T 3d0c_A 80 GRATVVAGI--GY-SVDTAIELGKSAIDSGADCVMIHQ--PVHPYITDAGAVEYYRNIIEA 135 (314)
T ss_dssp TSSEEEEEE--CS-SHHHHHHHHHHHHHTTCSEEEECC--CCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEecC--Cc-CHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 367888776 55 8999987554 56999887776 667666665555555554443
No 41
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.36 E-value=36 Score=23.83 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCC---------ceEEEeEecCCCCHHHHHHHHHHcCCCEEE
Q 024624 173 DEQAQALKTALEAKNLP---------VNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~---------~~V~~AMrY~~P~IedaL~qL~~~GidrIV 219 (265)
++.|+.+.+.|...|.+ +.|.+|---..--.++++++|++.|++-.|
T Consensus 20 ~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~~i 75 (79)
T 1x60_A 20 KANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDAIV 75 (79)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCCEE
T ss_pred HHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCceEE
Confidence 45666677777554422 456665322223345666677777875444
No 42
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=37.21 E-value=1.7e+02 Score=26.23 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=36.0
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..| -+..+++++++.. .+.|+|-++++| |.|...|-...++.+......
T Consensus 90 grvpViaG--vg~~st~~ai~la~~A~~~Gadavlv~~--P~y~~~~~~~l~~~f~~va~a 146 (315)
T 3si9_A 90 KRVPVVAG--AGSNSTSEAVELAKHAEKAGADAVLVVT--PYYNRPNQRGLYTHFSSIAKA 146 (315)
T ss_dssp TSSCBEEE--CCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEe--CCCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHc
Confidence 35677665 4677899998844 457999888876 566666665555555554443
No 43
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=36.47 E-value=1.1e+02 Score=26.91 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=37.7
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEecCCCc-cccchHHHHHHHHHHHHhc
Q 024624 195 GMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF-SISTTGSSIRVLQNIFRYC 246 (265)
Q Consensus 195 AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQY-S~sTtgS~~~~l~~~l~~~ 246 (265)
+...|+|..++++++....|+|+++++..-+.| ....+..+-+.+.+++++.
T Consensus 63 av~~G~~~a~~~lr~ala~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~ 115 (255)
T 1efv_B 63 AVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKE 115 (255)
T ss_dssp EEEEESTTHHHHHHHHHHHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCChhHHHHHHHHHhcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhc
Confidence 455677789999999988999999999866655 4444555556666666553
No 44
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=36.41 E-value=1.9e+02 Score=26.32 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=35.6
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+..+..
T Consensus 99 grvpViaGv--g~~st~eai~la~~A~~~Gadavlv~~--P~Y~~~s~~~l~~~f~~VA~ 154 (343)
T 2v9d_A 99 RRVPVLIGT--GGTNARETIELSQHAQQAGADGIVVIN--PYYWKVSEANLIRYFEQVAD 154 (343)
T ss_dssp TSSCEEEEC--CSSCHHHHHHHHHHHHHHTCSEEEEEC--CSSSCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 356777663 6678999987544 46999888886 56766666555555554443
No 45
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=36.06 E-value=2.3e+02 Score=25.04 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=36.1
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.++|..| -+...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 77 rvpviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 132 (301)
T 3m5v_A 77 KVKVLAG--AGSNATHEAVGLAKFAKEHGADGILSVA--PYYNKPTQQGLYEHYKAIAQS 132 (301)
T ss_dssp SCEEEEE--CCCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHh
Confidence 5777776 47788999998544 57999888875 556666665555555554443
No 46
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=35.08 E-value=2.3e+02 Score=24.85 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=35.6
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..| -+...++|+++.. .+.|+|-++++| |.|...|-...++.+......
T Consensus 69 gr~pviaG--vg~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~ia~a 125 (291)
T 3tak_A 69 KRIPIIAG--TGANSTREAIELTKAAKDLGADAALLVT--PYYNKPTQEGLYQHYKAIAEA 125 (291)
T ss_dssp TSSCEEEE--CCCSSHHHHHHHHHHHHHHTCSEEEEEC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEe--CCCCCHHHHHHHHHHHHhcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHh
Confidence 35777776 4677899999854 456999888876 556555655555555554443
No 47
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=35.08 E-value=1.7e+02 Score=26.22 Aligned_cols=54 Identities=13% Similarity=0.045 Sum_probs=35.3
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..| -+...++|+++.. .+.|+|-++++| |.|...|-...++.+......
T Consensus 92 grvpViaG--vg~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 148 (315)
T 3na8_A 92 HRVPTIVS--VSDLTTAKTVRRAQFAESLGAEAVMVLP--ISYWKLNEAEVFQHYRAVGEA 148 (315)
T ss_dssp TSSCBEEE--CCCSSHHHHHHHHHHHHHTTCSEEEECC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEe--cCCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 35667666 3677899998854 456999777765 566666665555555554443
No 48
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=34.84 E-value=2e+02 Score=25.23 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=34.1
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~ 244 (265)
.++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+.....
T Consensus 69 r~pviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~ia~ 123 (292)
T 2vc6_A 69 RVPVIAGA--GSNSTAEAIAFVRHAQNAGADGVLIVS--PYYNKPTQEGIYQHFKAIDA 123 (292)
T ss_dssp SSCBEEEC--CCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHHHHH
T ss_pred CCcEEEec--CCccHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHH
Confidence 56666654 6678899887544 46999887776 55666666555555544444
No 49
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=34.65 E-value=86 Score=26.73 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhc
Q 024624 174 EQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYC 246 (265)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~ 246 (265)
..|.+|++.+. .++.+ .-.+++ .+++++++...|+|+++++. -|.|....+..+-+.+.+++++.
T Consensus 26 ~~A~~La~~~g---~~v~a---v~~G~~-~~~~~~~~~~~Gad~v~~v~-~~~~~~~~~~~~a~~l~~~i~~~ 90 (217)
T 3ih5_A 26 TKGRSLANELN---CQLEA---VVAGTG-LKEIEKQILPYGVDKLHVFD-AEGLYPYTSLPHTSILVNLFKEE 90 (217)
T ss_dssp HHHHHHHHHHT---CCEEE---EEEESC-CTTTHHHHGGGTCSEEEEEE-CGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CeEEE---EEECCC-HHHHHHHHHhcCCCEEEEec-CcccccCCHHHHHHHHHHHHHhc
Confidence 34555655553 23322 222444 67888899899999999886 45666666666667777766654
No 50
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=34.21 E-value=1e+02 Score=28.00 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=36.9
Q ss_pred CCCCHHHH---HHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 199 WYPFTEEA---VQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 199 ~~P~Ieda---L~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
+.|++.+. .+++.++| ++||+|++.-..|.| ..++ ..+.+.+.+.....++.+|++-+
T Consensus 97 SqPs~~~~~~~f~~l~~~g-~~Ii~I~iSS~LSGT-y~sA-~~Aa~~~~e~~~~~~I~ViDS~~ 157 (320)
T 3pl5_A 97 SQVNVGQFESYFRQSAENG-QEVLYIAFSSVLSGT-YQSA-VMARDIVLEEYPQASIEIVDTLA 157 (320)
T ss_dssp ECCCHHHHHHHHHHHHHTT-CCEEEEECCTTTCTH-HHHH-HHHHHHHHHHCTTCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHCC-CeEEEEecCchHhHH-HHHH-HHHHHHHHhhCCCCeEEEEcCCc
Confidence 58887554 45666788 899999998776543 2222 33334444444445788888765
No 51
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=34.12 E-value=1.5e+02 Score=26.25 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=35.6
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
.++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 69 rvpviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~s~~~l~~~f~~va~a 124 (297)
T 2rfg_A 69 RVPVIAGA--GSNNPVEAVRYAQHAQQAGADAVLCVA--GYYNRPSQEGLYQHFKMVHDA 124 (297)
T ss_dssp SSCBEEEC--CCSSHHHHHHHHHHHHHHTCSEEEECC--CTTTCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEcc--CCCCHHHHHHHHHHHHhcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHh
Confidence 56677664 6778999987544 46999887776 667666666665555554443
No 52
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=34.04 E-value=1.2e+02 Score=23.34 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCCc--cccchHHHHHHHH
Q 024624 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQF--SISTTGSSIRVLQ 240 (265)
Q Consensus 172 T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQY--S~sTtgS~~~~l~ 240 (265)
.++..+.+.+.+.+.+.++++..-...+.| .+.+++...+.++| +||+--...- ...-.||.-+.+-
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~-~~~I~~~a~~~~~D-LIV~G~~g~~~~~~~~lGSv~~~vl 144 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAEGEEHLLVRGKEP-PDDIVDFADEVDAI-AIVIGIRKRSPTGKLIFGSVARDVI 144 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSSCH-HHHHHHHHHHTTCS-EEEEECCEECTTSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCH-HHHHHHHHHHcCCC-EEEECCCCCCCCCCEEeccHHHHHH
Confidence 344445555566666767776655666766 35556666666888 5555444321 2223455555443
No 53
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=33.08 E-value=1.9e+02 Score=26.15 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=36.7
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+......
T Consensus 102 grvpViaGv--g~~st~eai~la~~A~~~Gadavlv~~--P~Y~~~s~~~l~~~f~~VA~a 158 (332)
T 2r8w_A 102 GRRTLMAGI--GALRTDEAVALAKDAEAAGADALLLAP--VSYTPLTQEEAYHHFAAVAGA 158 (332)
T ss_dssp TSSEEEEEE--CCSSHHHHHHHHHHHHHHTCSEEEECC--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEec--CCCCHHHHHHHHHHHHhcCCCEEEECC--CCCCCCCHHHHHHHHHHHHHh
Confidence 357777764 5678999987544 46999887776 667666666665555554443
No 54
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=32.84 E-value=74 Score=28.52 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
+.|+..+..+.+.+ |.++|+++++.-.-|.| ..++ ..+.+.+.+.....++++|++-+
T Consensus 81 Sqps~~~~~~~f~~-~~~~Ii~i~iSs~LSGT-y~sA-~~Aa~~~~e~~~~~~I~ViDS~~ 138 (298)
T 3jr7_A 81 SCPSPERYMESYHC-DAERIYVVTLSAELSGS-YNSA-VLGKNLYEEEYGEKQIHVFNSRS 138 (298)
T ss_dssp ECCCHHHHHHHHCS-SCSEEEEEESCTTTCSH-HHHH-HHHHHHHHHHHCCCEEEEEECSS
T ss_pred CCCCHHHHHHHHHh-cCCeEEEEECCcchhHH-HHHH-HHHHHHHHhhCCCCeEEEECCCc
Confidence 69999998888875 88999999998776543 2222 23333444333345788888765
No 55
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=32.75 E-value=1.3e+02 Score=23.64 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcC-CCEEEEEecCCCcccc--------chHHHHHHHHHHHHhcCCCc-ceEEeeccccccc
Q 024624 203 TEEAVQQIKRDR-ITRLVVLPLYPQFSIS--------TTGSSIRVLQNIFRYCCVSV-NWKFLASSNRFCP 263 (265)
Q Consensus 203 IedaL~qL~~~G-idrIVvLPLyPQYS~s--------TtgS~~~~l~~~l~~~~~~~-~lrfI~s~~~~~~ 263 (265)
+.+.++++++.+ -.+|+++.+.|..... .....++.+.+++++..-.. ++.||+.+.-|+.
T Consensus 111 l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~~iD~~~~~~~ 181 (214)
T 2hsj_A 111 LEAIIQSVARDYPLTEIKLLSILPVNEREEYQQAVYIRSNEKIQNWNQAYQELASAYMQVEFVPVFDCLTD 181 (214)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHHHTTCCHHHHHHHHHHHHHHHTTCTTEEEECCGGGSBC
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCcccccccccccccHHHHHHHHHHHHHHHHHcCCCEEEEhHHHHhC
Confidence 344555555554 2456666666654332 12333445555555543333 7889887766653
No 56
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=31.82 E-value=80 Score=27.88 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCceEEEeEecCCC--------CHHHHHHHHHHcCCCEEEEE
Q 024624 175 QAQALKTALEAKNLPVNVYVGMRYWYP--------FTEEAVQQIKRDRITRLVVL 221 (265)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~AMrY~~P--------~IedaL~qL~~~GidrIVvL 221 (265)
.+...-+...+.|..+.+++.|.|+.| ++.+.++++.+.|+++|.+-
T Consensus 122 ~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 176 (298)
T 2cw6_A 122 RFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLG 176 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 333334444556777777777766655 45667778888999976554
No 57
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=31.37 E-value=1.3e+02 Score=26.50 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
+.|+..+..+.+. |.++|+++++.-.-|.| -.....+.+.+.+.....++++|++-+
T Consensus 61 Sqps~~~~~~~f~--~~~~ii~i~iSs~LSGT--y~sA~~aa~~~~ee~~~~~I~ViDS~~ 117 (278)
T 3fdj_A 61 ACPGIDAWLEAFG--DDDEIFVVTITAGMSGT--YNSAMAARAVYLEEHPQAKVRVIDSKS 117 (278)
T ss_dssp ECCCHHHHHHHHT--TCSEEEEEESCTTTCSH--HHHHHHHHHHHHTTCTTCEEEEEECSS
T ss_pred cCCCHHHHHHHHh--cCCcEEEEECCCcHhHH--HHHHHHHHHHHHhhCCCCeEEEEcCCc
Confidence 5899999888775 78999999998776532 222233444555544456899998865
No 58
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=31.04 E-value=2.4e+02 Score=24.81 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=35.9
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccc-cchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSI-STTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~-sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|.. .|-...++.+......
T Consensus 71 gr~pviaGv--g~~~t~~ai~la~~A~~~Gadavlv~~--P~y~~~~s~~~l~~~f~~va~a 128 (294)
T 3b4u_A 71 APSRIVTGV--LVDSIEDAADQSAEALNAGARNILLAP--PSYFKNVSDDGLFAWFSAVFSK 128 (294)
T ss_dssp CGGGEEEEE--CCSSHHHHHHHHHHHHHTTCSEEEECC--CCSSCSCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEeC--CCccHHHHHHHHHHHHhcCCCEEEEcC--CcCCCCCCHHHHHHHHHHHHHh
Confidence 457777764 5678999988554 46999887776 56666 5655555555554443
No 59
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=30.80 E-value=1.2e+02 Score=24.58 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcC-CCEEEEEecCCCcccc-chHHHHHHHHHHHHh-cCCCcceEEeecccccc
Q 024624 203 TEEAVQQIKRDR-ITRLVVLPLYPQFSIS-TTGSSIRVLQNIFRY-CCVSVNWKFLASSNRFC 262 (265)
Q Consensus 203 IedaL~qL~~~G-idrIVvLPLyPQYS~s-TtgS~~~~l~~~l~~-~~~~~~lrfI~s~~~~~ 262 (265)
+++.++++++.. -.+|+++.++|..... .....++.+.+++++ ..-..++.||+.+..||
T Consensus 117 l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~a~~~~v~~iD~~~~~~ 179 (232)
T 1es9_A 117 IKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFV 179 (232)
T ss_dssp HHHHHHHHHHHSTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHHHSCTTEEEECCCCCCS
T ss_pred HHHHHHHHHHHCCCCeEEEecCCCCCCCchhHHHHHHHHHHHHHHHHhhcCCCEEEeChHHhc
Confidence 455666666652 3568888888765432 122344556666665 34456789998877766
No 60
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=29.69 E-value=1.8e+02 Score=27.01 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHH
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l~~ 241 (265)
..++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+..
T Consensus 127 grvpViaGv--g~~st~eai~la~~A~~~Gadavlvv~--PyY~k~sq~gl~~hf~~ 179 (360)
T 4dpp_A 127 GSIKVIGNT--GSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSIEGLIAHFQS 179 (360)
T ss_dssp TTSEEEEEC--CCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHHHT
T ss_pred CCCeEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHH
Confidence 467787764 6788999998554 46999888886 45666665544444443
No 61
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.39 E-value=2e+02 Score=25.50 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=34.2
Q ss_pred CCceEEEeEecCCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 024624 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRY 245 (265)
Q Consensus 188 ~~~~V~~AMrY~~P~IedaL~qL---~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~ 245 (265)
..++|..|- +...++|+++.. .+.|+|-++++| |.|...|-...++.+......
T Consensus 72 grvpviaGv--g~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~~~~~l~~~f~~va~a 128 (300)
T 3eb2_A 72 RRVPVVAGV--ASTSVADAVAQAKLYEKLGADGILAIL--EAYFPLKDAQIESYFRAIADA 128 (300)
T ss_dssp TSSCBEEEE--EESSHHHHHHHHHHHHHHTCSEEEEEE--CCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEeC--CCCCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCCHHHHHHHHHHHHHH
Confidence 356666653 556788888844 456999888876 445555655555555554443
No 62
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=27.83 E-value=1.8e+02 Score=23.41 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=35.3
Q ss_pred HHHHHHHHHHc-CCCEEEEEecCCCcccc-chHHHHHHHHHHHHhcCC-CcceEEeecccccc
Q 024624 203 TEEAVQQIKRD-RITRLVVLPLYPQFSIS-TTGSSIRVLQNIFRYCCV-SVNWKFLASSNRFC 262 (265)
Q Consensus 203 IedaL~qL~~~-GidrIVvLPLyPQYS~s-TtgS~~~~l~~~l~~~~~-~~~lrfI~s~~~~~ 262 (265)
+++.++++++. .-.+|+++.++|..... .....++.+.+.+++..- ..++.||+.+..||
T Consensus 118 l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~v~~iD~~~~~~ 180 (229)
T 1fxw_F 118 IEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFV 180 (229)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSCB
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHhcCCCeEEEeCHHHhh
Confidence 44555666654 23567777777754332 123345566666665543 56788888776665
No 63
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=26.91 E-value=2.8e+02 Score=24.28 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=34.4
Q ss_pred CceEEEeEecCCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+++|.+|.-=..|+..+..+..++.|.+=++-+||-|.
T Consensus 27 p~pvT~Ai~P~~p~~~~~a~~A~~~G~EvllHlPMep~ 64 (245)
T 2nly_A 27 EIPVTVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPK 64 (245)
T ss_dssp SSCEEEEECSSSTTHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 57899997777799999999999999999999999887
No 64
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=26.29 E-value=3e+02 Score=23.41 Aligned_cols=69 Identities=7% Similarity=-0.085 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE-EecCCCccccchHHHHHHHHH
Q 024624 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV-LPLYPQFSISTTGSSIRVLQN 241 (265)
Q Consensus 169 ~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv-LPLyPQYS~sTtgS~~~~l~~ 241 (265)
...++..++.+.+.+.+.|.++ ++-.-+...-+++.++++.+. |.||+ .|+|=..-......++|.+..
T Consensus 42 ~s~n~~L~~~~~~~l~~~g~ev--~~~dL~~~~Dv~~~~~~l~~a--D~iv~~~P~y~~~~p~~lK~~iD~v~~ 111 (218)
T 3rpe_A 42 GALNLTLTNVAADFLRESGHQV--KITTVDQGYDIESEIENYLWA--DTIIYQMPAWWMGEPWILKKYIDEVFT 111 (218)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCE--EEEEGGGCCCHHHHHHHHHHC--SEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCEE--EEEECCCccCHHHHHHHHHhC--CEEEEECChHhccCCHHHHHHHHHHHh
Confidence 3688889999998888766544 443344456788888888754 54443 355433333333344555543
No 65
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=25.76 E-value=49 Score=26.45 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCC
Q 024624 203 TEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 203 IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
+++.++++++.|. +++++...|.
T Consensus 102 l~~~i~~~~~~~~-~vil~~~~p~ 124 (240)
T 3mil_A 102 IRQMVSLMKSYHI-RPIIIGPGLV 124 (240)
T ss_dssp HHHHHHHHHHTTC-EEEEECCCCC
T ss_pred HHHHHHHHHHcCC-eEEEEcCCCC
Confidence 4455666666665 5666655553
No 66
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=25.57 E-value=33 Score=29.68 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=39.9
Q ss_pred hhhhhcC--CCCchHHHHHHHHHHHHHHHHhCCCCceEEEe--EecCCCCHHHHHHHHHHcCCC
Q 024624 157 EGYAAIG--GGSPLRKITDEQAQALKTALEAKNLPVNVYVG--MRYWYPFTEEAVQQIKRDRIT 216 (265)
Q Consensus 157 ~~Y~~IG--ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~A--MrY~~P~IedaL~qL~~~Gid 216 (265)
..|+-.. --||=..-.++.|+-|++ ..+..+.+++| +-|+.|...+.|+.|.++|+.
T Consensus 84 ~~y~VTwy~SwSPC~~CA~~va~FL~~---~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~ 144 (190)
T 3vow_A 84 TKYQVTWYTSWSPCPDCAGEVAEFLAR---HSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVA 144 (190)
T ss_dssp SEEEEEEEEEECCCHHHHHHHHHHHHH---CTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEEeCCchHHHHHHHHHHHHh---CCCeEEEEEEEecccccCchHHHHHHHHHHCCCc
Confidence 4566553 348888765555555542 22356788888 445789999999999999987
No 67
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=25.29 E-value=1.9e+02 Score=25.58 Aligned_cols=58 Identities=5% Similarity=-0.005 Sum_probs=35.4
Q ss_pred CCCCHHHH---HHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhcCCCcceEEeeccc
Q 024624 199 WYPFTEEA---VQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRYCCVSVNWKFLASSN 259 (265)
Q Consensus 199 ~~P~Ieda---L~qL~~~GidrIVvLPLyPQYS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~ 259 (265)
+.|+..+. .+++.++| ++|+++++.-.-|.|- .++ ..+.+.+.+.....++++|++-+
T Consensus 63 Sqps~~~~~~~f~~l~~~g-~~ii~i~iSs~LSGTy-~sA-~~aa~~~~ee~~~~~I~ViDS~~ 123 (289)
T 1pzx_A 63 AQPSPLAMKELFLPYAKEN-RPCLYIAFSSKLSGTY-QTA-MAVRSELLDEYPEFRLTIIDSKC 123 (289)
T ss_dssp ECCCHHHHHHHHHHHHHTT-CCEEEEECCTTTCSHH-HHH-HHHHHHHHHHSTTCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHhCC-CeEEEEECCCchhHHH-HHH-HHHHHhhHhhCCCCeEEEEcCch
Confidence 57888655 45666778 7999999988766432 222 22223333222234788888765
No 68
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=25.07 E-value=2.4e+02 Score=24.68 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=31.7
Q ss_pred CceEEEeEecCCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHH
Q 024624 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVL 239 (265)
Q Consensus 189 ~~~V~~AMrY~~P~IedaL~qL~---~~GidrIVvLPLyPQYS~sTtgS~~~~l 239 (265)
.++|..|- +...++++++..+ +.|+|-++++| |.|...|-...++.+
T Consensus 70 r~pvi~Gv--g~~~t~~ai~la~~a~~~Gadavlv~~--P~y~~~s~~~l~~~f 119 (291)
T 3a5f_A 70 RIPVIAGT--GSNNTAASIAMSKWAESIGVDGLLVIT--PYYNKTTQKGLVKHF 119 (291)
T ss_dssp SSCEEEEC--CCSSHHHHHHHHHHHHHTTCSEEEEEC--CCSSCCCHHHHHHHC
T ss_pred CCcEEEeC--CcccHHHHHHHHHHHHhcCCCEEEEcC--CCCCCCCHHHHHHHH
Confidence 56777664 6778999987554 56999888886 567665554444333
No 69
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=24.96 E-value=75 Score=25.34 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCCEEEEEecCCC---ccccchHHHHHHHHHHHHhcCCCcceEEeecccccc
Q 024624 204 EEAVQQIKRDRITRLVVLPLYPQ---FSISTTGSSIRVLQNIFRYCCVSVNWKFLASSNRFC 262 (265)
Q Consensus 204 edaL~qL~~~GidrIVvLPLyPQ---YS~sTtgS~~~~l~~~l~~~~~~~~lrfI~s~~~~~ 262 (265)
++.++++++. .+|+++.+.|. +.. ......+.+.+++++..-..++.||+.+..||
T Consensus 120 ~~li~~l~~~--~~iil~~~~p~~~~~~~-~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~~ 178 (218)
T 1vjg_A 120 REILTQAKKL--YPVLMISPAPYIEQQDP-GRRRRTIDLSQQLALVCQDLDVPYLDVFPLLE 178 (218)
T ss_dssp HHHHHHHHHH--SCEEEECCCCCCCTTCT-THHHHHHHHHHHHHHHHHHHTCCEECCTGGGS
T ss_pred HHHHHHHHHh--CcEEEECCCCccccccc-hHHHHHHHHHHHHHHHHHHcCCcEEehHHhhc
Confidence 4445555554 45666666555 332 22222333333333221122566676665555
No 70
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=24.27 E-value=20 Score=25.76 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=32.9
Q ss_pred cHHHHHHHhcCCCCccc-CchhhhhhhhHHHHHHHhccchhhHhhhhhcC
Q 024624 115 DVQPFLFNLFADPDIIR-LPRLFRFLQWPLAKLISVVRAPKSKEGYAAIG 163 (265)
Q Consensus 115 dV~~FL~~fl~D~~VI~-iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~IG 163 (265)
....||.+++.|+..+. .|..|-.+-++|..-|.+.| ...|+.-+
T Consensus 5 ~~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR----~~Lf~~~~ 50 (60)
T 3k6t_A 5 ATVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVR----VALFQTEF 50 (60)
T ss_dssp CCHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHH----HHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH----HHHHccCC
Confidence 34589999999997653 57766666667888899888 45665443
No 71
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=23.97 E-value=2e+02 Score=25.04 Aligned_cols=51 Identities=20% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
.+.+..++.+++.+.+.|..+.....+..+.......+.++++.+.|-|++
T Consensus 150 ~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~pd~v~~ 200 (371)
T 4f06_A 150 GPGIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGPIMQRIKNSGADMIFT 200 (371)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEE
T ss_pred ccchhHHHHHHHHHHhcCCceEEEEecCcccccHHHHHHHHHhcCCCEEEE
Confidence 467778888898998877666555666777888899999999999995543
No 72
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=23.92 E-value=89 Score=27.20 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=39.7
Q ss_pred hhhhhcC--CCCchHHHHHHHHHHHHHHHHh-CCCCceEEEe-EecCCCCHHHHHHHHHHcCCC
Q 024624 157 EGYAAIG--GGSPLRKITDEQAQALKTALEA-KNLPVNVYVG-MRYWYPFTEEAVQQIKRDRIT 216 (265)
Q Consensus 157 ~~Y~~IG--ggSPL~~~T~~Qa~~L~~~L~~-~g~~~~V~~A-MrY~~P~IedaL~qL~~~Gid 216 (265)
+.|+-.. --||=.+=.++. .+-|.+ .+....++.| ..|..|...++|+.|.+.|++
T Consensus 98 ~~Y~vTwy~SWSPC~~CA~~v----~~FL~~~~~v~L~If~aRLY~~~~~~~~gLr~L~~aG~~ 157 (203)
T 3v4k_A 98 QDYRVTCFTSWSPCFSCAQEM----AKFISKNKHVSLCIKTARIYDDQGRCQEGLRTLAEAGAK 157 (203)
T ss_pred CeEEEEEEEeCCChHHHHHHH----HHHHhhCCCeEEEEEEEeecccCchHHHHHHHHHHCCCe
Confidence 5777764 448988754444 444443 3456788888 334489999999999999977
No 73
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=23.91 E-value=1.6e+02 Score=24.49 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=6.6
Q ss_pred HHHHHHHHcCCCEEEEE
Q 024624 205 EAVQQIKRDRITRLVVL 221 (265)
Q Consensus 205 daL~qL~~~GidrIVvL 221 (265)
+.++.+.+.++|-||++
T Consensus 57 ~~~~~l~~~~vdgiIi~ 73 (289)
T 3k9c_A 57 VAVQALMRERCEAAILL 73 (289)
T ss_dssp HHHHHHTTTTEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEE
Confidence 33333333344433333
No 74
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=22.73 E-value=1.8e+02 Score=25.60 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 169 ~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
..+.+..++.+++.+.+.|..+.....+..+.......+.++++.+.|-|++
T Consensus 174 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~ 225 (419)
T 3h5l_A 174 GIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVV 225 (419)
T ss_dssp SHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEE
T ss_pred cchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEE
Confidence 4677888999999998877554433444455677889999999999884433
No 75
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=22.68 E-value=2.9e+02 Score=21.99 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=21.7
Q ss_pred CCch---HHHHHHHHHHHHHHHHhCCCCceEEE
Q 024624 165 GSPL---RKITDEQAQALKTALEAKNLPVNVYV 194 (265)
Q Consensus 165 gSPL---~~~T~~Qa~~L~~~L~~~g~~~~V~~ 194 (265)
+||- ...|+..++.+.+.+.+.|++.+|.+
T Consensus 9 gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~ 41 (208)
T 2hpv_A 9 AHPLTKEESRSVRALETFLASYRETNPSDEIEI 41 (208)
T ss_dssp CCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 4666 47899999999999987664444444
No 76
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=22.31 E-value=75 Score=28.21 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=56.2
Q ss_pred CceEEEEEccCCCCCcCcHHHHHHHhc-CCCCcccC--chhhhhhhhHHH--HHHHhccchhhHhhhhhcCCCCchHHHH
Q 024624 98 DKVGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRL--PRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKIT 172 (265)
Q Consensus 98 ~K~aVLLvNlG~P~s~~dV~~FL~~fl-~D~~VI~i--P~~~~~~~~~L~--~iI~~~R~~ksa~~Y~~IGggSPL~~~T 172 (265)
+|--|-.+-.|-|+ ++.-.+++..+- .+-++|++ |. -.|++ ..|.. ...+.+..|--+.. .
T Consensus 17 ~~ali~yi~aGdP~-~~~~~~~~~~l~~~GaD~iElgiPf-----SDP~aDGp~Iq~-------a~~~AL~~G~~~~~-~ 82 (267)
T 3vnd_A 17 KGAFVPFVTIGDPS-PELSLKIIQTLVDNGADALELGFPF-----SDPLADGPVIQG-------ANLRSLAAGTTSSD-C 82 (267)
T ss_dssp CCEEEEEEETTSSC-HHHHHHHHHHHHHTTCSSEEEECCC-----SCCTTCCHHHHH-------HHHHHHHTTCCHHH-H
T ss_pred CCeEEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEECCCC-----CCCCCCCHHHHH-------HHHHHHHcCCCHHH-H
Confidence 33334556667774 222333444433 45567764 41 22343 33332 23334433333322 2
Q ss_pred HHHHHHHHHHHHhCCCCceEEEeEecCCC----CHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P----~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
-++.+.+++. +.+++ .+.|.|++| -++.-++++++.|++-+++ |=.|.
T Consensus 83 ~~~v~~ir~~----~~~~P-ivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii-~Dlp~ 134 (267)
T 3vnd_A 83 FDIITKVRAQ----HPDMP-IGLLLYANLVFANGIDEFYTKAQAAGVDSVLI-ADVPV 134 (267)
T ss_dssp HHHHHHHHHH----CTTCC-EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEE-TTSCG
T ss_pred HHHHHHHHhc----CCCCC-EEEEecCcHHHHhhHHHHHHHHHHcCCCEEEe-CCCCH
Confidence 2344444433 22455 445999999 4588899999999997665 44443
No 77
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=21.82 E-value=2.4e+02 Score=23.89 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
.+.+...+.+++.|.+.|..+.....+..+.......++++++.+.+-|++
T Consensus 150 ~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~ 200 (368)
T 4eyg_A 150 APGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFV 200 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEE
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEE
Confidence 466677888888888777554444445556777888999999988885544
No 78
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=21.56 E-value=2.5e+02 Score=23.78 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEEE
Q 024624 169 RKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (265)
Q Consensus 169 ~~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIVv 220 (265)
..+.+...+.+++.|.+.|..+.....+..+.......++++++.+.+-|++
T Consensus 149 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~ 200 (358)
T 3hut_A 149 TDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYL 200 (358)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEE
Confidence 3467777888888888776554433445556677788899998888874433
No 79
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.29 E-value=1.3e+02 Score=27.93 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHH
Q 024624 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIK 211 (265)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~ 211 (265)
.|++.|+++++.|.+.|.+..++--+.-..+-+.++++++.
T Consensus 278 nTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~ 318 (410)
T 4dik_A 278 FVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIP 318 (410)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHST
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHH
Confidence 79999999999999888655544334445566677766655
No 80
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}
Probab=20.96 E-value=2e+02 Score=23.91 Aligned_cols=28 Identities=4% Similarity=0.081 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 024624 199 WYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (265)
Q Consensus 199 ~~P~IedaL~qL~~~GidrIVvLPLyPQ 226 (265)
..|..++.+++|.+.|++++|+++..|.
T Consensus 11 l~~~~~~~l~~m~~~Gv~~~v~~~~~~~ 38 (272)
T 3cjp_A 11 VILPVEKHIKIMDEAGVDKTILFSTSIH 38 (272)
T ss_dssp CCSSHHHHHHHHHHHTCCEEEEECCSCC
T ss_pred cCCCHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3455699999999999999999998765
No 81
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=20.76 E-value=1.4e+02 Score=23.08 Aligned_cols=59 Identities=7% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCCcccc-----chHHHHHHHHHHHHhcCCCcceEEeecccccc
Q 024624 203 TEEAVQQIKRDRITRLVVLPLYPQFSIS-----TTGSSIRVLQNIFRYCCVSVNWKFLASSNRFC 262 (265)
Q Consensus 203 IedaL~qL~~~GidrIVvLPLyPQYS~s-----TtgS~~~~l~~~l~~~~~~~~lrfI~s~~~~~ 262 (265)
+++.++++++.|. +++++.+.|..... .....++.+.+++++..-..++.||+.+..|+
T Consensus 103 ~~~~i~~~~~~~~-~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~iD~~~~~~ 166 (204)
T 3p94_A 103 LVSMAELAKANHI-KVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYVDYHSAMK 166 (204)
T ss_dssp HHHHHHHHHHTTC-EEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEECHHHHHC
T ss_pred HHHHHHHHHhCCC-eEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEEchhhhhh
Confidence 3445555666565 46666555543221 12233344444433322223577777665554
No 82
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=20.75 E-value=2.8e+02 Score=23.73 Aligned_cols=50 Identities=10% Similarity=-0.100 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEEeEecCCCCHHHHHHHHHHcCCCEEE
Q 024624 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (265)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~AMrY~~P~IedaL~qL~~~GidrIV 219 (265)
.+.+..++.+++.+.+.|..+....-+..+.......+.++++.+.|-|+
T Consensus 151 ~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~ 200 (375)
T 3i09_A 151 AFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILG 200 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEE
Confidence 46777888888888877655433344555677788899999998888443
No 83
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=20.70 E-value=78 Score=29.45 Aligned_cols=78 Identities=23% Similarity=0.256 Sum_probs=44.5
Q ss_pred EccCCCCCcCcHHHHHHHhcCCCCcccCchhhhhhhhHHHHHHHhccchhhHhhhhhc-CCCCchHHHHHHHHHHHHHHH
Q 024624 105 LNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAI-GGGSPLRKITDEQAQALKTAL 183 (265)
Q Consensus 105 vNlG~P~s~~dV~~FL~~fl~D~~VI~iP~~~~~~~~~L~~iI~~~R~~ksa~~Y~~I-GggSPL~~~T~~Qa~~L~~~L 183 (265)
+.+||-.+.+.+...++-+++|++|=-+ +| .| ||--.- +..|+.+.+.+
T Consensus 287 lD~gG~a~~~~~~~~~~~il~d~~v~~i-------------lv-------------ni~ggi~~~----~~vA~gii~a~ 336 (388)
T 2nu8_B 287 LDVGGGATKERVTEAFKIILSDDKVKAV-------------LV-------------NIFGGIVRC----DLIADGIIGAV 336 (388)
T ss_dssp EECCSCCCHHHHHHHHHHHHTSTTCCEE-------------EE-------------EEESCSSCH----HHHHHHHHHHH
T ss_pred eEecCCCCHHHHHHHHHHHhcCCCCCEE-------------EE-------------EecCCcCCc----hHHHHHHHHHH
Confidence 3445555667888888888888765111 00 01 332221 23345555555
Q ss_pred HhCCCCceEEEeEecCCCCHHHHHHHHHHcC
Q 024624 184 EAKNLPVNVYVGMRYWYPFTEEAVQQIKRDR 214 (265)
Q Consensus 184 ~~~g~~~~V~~AMrY~~P~IedaL~qL~~~G 214 (265)
.+.+..++|.+ |-.-+..++..+.|.+.|
T Consensus 337 ~~~~~~~pivv--rl~G~n~~~g~~~l~~~g 365 (388)
T 2nu8_B 337 AEVGVNVPVVV--RLEGNNAELGAKKLADSG 365 (388)
T ss_dssp HHHTCCSCEEE--EEESTTHHHHHHHHHTTC
T ss_pred HhcCCCCeEEE--EeCCCCHHHHHHHHHHCC
Confidence 44334556666 446678888888888777
Done!