BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024627
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WYS|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WYS|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2WZE|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
pdb|2WZE|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D
Xylanas Xylohexaose
Length = 540
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 147 GMGIKQGKTYKVVFYIRSLG--------SVNILVSLTSSNGLQTLATSNIIASASDVSNW 198
G + G YK +++ G SV+ L S T + +AT +++A W
Sbjct: 77 GFYLDGGVEYKYSVFVKHNGTGTETFKLSVSYLDSETEEENKEVIATKDVVAGE-----W 131
Query: 199 TRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKGHGFRNVLFQMLADLKPR 258
T + +A +T N L +TT FD V+ T KG N ++ A LK
Sbjct: 132 TEISAKYKAPKTAVNITLSITTDSTVDFIFDDVTI----TRKGXAEANTVYAANAVLKDX 187
Query: 259 FLRF 262
+ +
Sbjct: 188 YANY 191
>pdb|2W5F|A Chain A, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
pdb|2W5F|B Chain B, High Resolution Crystallographic Structure Of The
Clostridium Thermocellum N-Terminal Endo-1,4-Beta-D-
Xylanase 10b (Xyn10b) Cbm22-1-Gh10 Modules Complexed
With Xylohexaose
Length = 540
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 147 GMGIKQGKTYKVVFYIRSLG--------SVNILVSLTSSNGLQTLATSNIIASASDVSNW 198
G + G YK +++ G SV+ L S T + +AT +++A W
Sbjct: 77 GFYLDGGVEYKYSVFVKHNGTGTETFKLSVSYLDSETEEENKEVIATKDVVAGE-----W 131
Query: 199 TRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKGHGFRNVLFQMLADLKPR 258
T + +A +T N L +TT FD V+ T KG N ++ A LK
Sbjct: 132 TEISAKYKAPKTAVNITLSITTDSTVDFIFDDVTI----TRKGMAEANTVYAANAVLKDM 187
Query: 259 FLRF 262
+ +
Sbjct: 188 YANY 191
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 79 FEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSC 111
F A N P NIDPW I+ I S C
Sbjct: 124 FIAAAANYPENIDPWHILQTGGKEIKSAIPMGC 156
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 170 ILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFD 229
++ S+ + L LA ++ + + N LL KE + A++ +TT+ +G+ FD
Sbjct: 275 VMQSINKAADLINLAKKPVLYVGAGILNHADGPRLL--KELSDRAQIPVTTTLQGLGSFD 332
Query: 230 QVSAMPLDTYKGHG 243
Q LD HG
Sbjct: 333 QEDPKSLDMLGMHG 346
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 170 ILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFD 229
++ S+ + L LA ++ + + N LL KE + A++ +TT+ +G+ FD
Sbjct: 228 VMQSINKAADLINLAKKPVLYVGAGILNHADGPRLL--KELSDRAQIPVTTTLQGLGSFD 285
Query: 230 QVSAMPLDTYKGHG 243
Q LD HG
Sbjct: 286 QEDPKSLDMLGMHG 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,307,110
Number of Sequences: 62578
Number of extensions: 276037
Number of successful extensions: 518
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 5
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)