BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024627
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1
SV=1
Length = 678
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/259 (69%), Positives = 213/259 (82%), Gaps = 8/259 (3%)
Query: 11 VLLLLFFIGTCFLFQCF---AAEVEVNQTARLLVDASQG--RPMPETLFGIFFEEINHAG 65
V +L F +G+CF++Q A+ + L VDAS G RP+PETLFGIFFEEINHAG
Sbjct: 12 VCVLSFLLGSCFVYQSLRVVDAQEDPKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAG 71
Query: 66 AGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLC 125
AGGLWAELVSNRGFEAGGQN PSNI PW+I+G+ SS+ V+TDRSSCFERNK+ALRM+VLC
Sbjct: 72 AGGLWAELVSNRGFEAGGQNTPSNIWPWSIVGDHSSIYVATDRSSCFERNKIALRMDVLC 131
Query: 126 DSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLAT 185
DS+G CP GGVGVYNPGYWGM I++GK YKV Y+RS G +++ VSLTSSNG +TLA+
Sbjct: 132 DSKG---CPSGGVGVYNPGYWGMNIEEGKKYKVALYVRSTGDIDLSVSLTSSNGSRTLAS 188
Query: 186 SNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKGHGFR 245
IIASASDVS W + E LLEAK T+P+ARLQLTT++KG IW DQVSAMP+DT+KGHGFR
Sbjct: 189 EKIIASASDVSKWIKKEVLLEAKATDPSARLQLTTTKKGSIWIDQVSAMPVDTHKGHGFR 248
Query: 246 NVLFQMLADLKPRFLRFPG 264
N LFQM+AD+KPRF+RFPG
Sbjct: 249 NDLFQMMADIKPRFIRFPG 267
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2
SV=1
Length = 674
Score = 362 bits (928), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/257 (68%), Positives = 206/257 (80%), Gaps = 6/257 (2%)
Query: 11 VLLLLFFIGTCFLFQCFA-AEVEVNQTARLLVDASQ--GRPMPETLFGIFFEEINHAGAG 67
V LL F +G+ ++Q + + + L VDAS RP+PETLFGIFFEEINHAGAG
Sbjct: 13 VCLLSFILGSFSVYQTLCLVDAQEDAIVTLQVDASNVTRRPIPETLFGIFFEEINHAGAG 72
Query: 68 GLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDS 127
GLWAELVSNRGFEAGGQ IPSNI PW+IIG++SS+ V TDRSSCFERNK+ALRMEVLCDS
Sbjct: 73 GLWAELVSNRGFEAGGQIIPSNIWPWSIIGDESSIYVVTDRSSCFERNKIALRMEVLCDS 132
Query: 128 QGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSN 187
N CP+GGVGVYNPGYWGM I++GK YKVV Y+RS G +++ VS TSSNG TLA+ N
Sbjct: 133 ---NSCPLGGVGVYNPGYWGMNIEEGKKYKVVLYVRSTGDIDVSVSFTSSNGSVTLASEN 189
Query: 188 IIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKGVIWFDQVSAMPLDTYKGHGFRNV 247
IIA ASD+ NWT+ E LLEA T+ ARLQ TT++KG IWFDQVSAMP+DTYKGHGFRN
Sbjct: 190 IIALASDLLNWTKKEMLLEANGTDNGARLQFTTTKKGSIWFDQVSAMPMDTYKGHGFRND 249
Query: 248 LFQMLADLKPRFLRFPG 264
LFQM+ DLKPRF+RFPG
Sbjct: 250 LFQMMVDLKPRFIRFPG 266
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1
Length = 825
Score = 88.2 bits (217), Expect = 6e-17, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 43 ASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPS--NIDPWAIIGNDS 100
A++G + +T++G+FFE+IN A GGL+AELV NR FE + S + W + G
Sbjct: 42 AAKGAAIDDTMYGVFFEDINRAADGGLYAELVQNRSFEYSTDDNRSYTPLTSWIVDGTGE 101
Query: 101 SLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGY-WGMGIKQGKTYKVV 159
V D ERN+ L + G V N GY G+ ++QGK Y
Sbjct: 102 ---VVNDAGRLNERNRNYLSLG-------------AGSSVTNAGYNTGIRVEQGKRYDFS 145
Query: 160 FYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLT 219
+ R+ + + V+L + G TLAT+ +A W + A T+ RL +
Sbjct: 146 VWARAGSASTLTVALKDAAG--TLATARQVAVE---GGWAKYRATFTATRTSNRGRLAVA 200
Query: 220 TSRKGVIWFDQVSAMPLDTYKG--HGFRNVLFQMLADLKPRFLRFPG 264
+ + D VS P DTY+ +G R L + +A L P F+RFPG
Sbjct: 201 ANDAAAL--DMVSLFPRDTYRNQQNGLRKDLAEKIAALHPGFVRFPG 245
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2
Length = 629
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 23/233 (9%)
Query: 39 LLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGN 98
L V +G L+G FE+INH+G GG++ +L+ N G Q + WA +G
Sbjct: 28 LEVSTEKGNSSSPILYGFMFEDINHSGDGGIYGQLLRNNGL----QGSKPGLTAWAAVG- 82
Query: 99 DSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKV 158
D+++ V ++ E +L+++V QG + G VG N GYWG+ + G +
Sbjct: 83 DATIAVDA-QNPLTEAIPHSLKLDV---KQGAS----GAVGFTNEGYWGVPV-DGSEFLN 133
Query: 159 VFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARL-Q 217
F+I+ S +I V L +N T S I+ +S+ SN+T+V + K+ A L +
Sbjct: 134 TFWIKGNFSGDITVRLVGNN-TGTEYGSTKISQSSNSSNFTKVLAKIPTKKAPDGAVLYE 192
Query: 218 LTTSRKGV----IWFDQVSAMPLDTYK--GHGFRNVLFQMLADLKPRFLRFPG 264
LT V + F P TYK +G + + Q LAD+K FLRFPG
Sbjct: 193 LTVDGASVGGSSLNFGLFELFP-QTYKSRSNGLKPQVAQPLADMKGSFLRFPG 244
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=abfA PE=3 SV=2
Length = 629
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 114/233 (48%), Gaps = 23/233 (9%)
Query: 39 LLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGN 98
L V +G L+G FE+INH+G GG++ +L+ N G Q + WA +G
Sbjct: 28 LEVSTEKGNSSSPILYGFMFEDINHSGDGGIYGQLLRNNGL----QGSKPGLTAWAAVG- 82
Query: 99 DSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKV 158
D+++ V ++ E +L+++V QG + G VG N GYWG+ + G +
Sbjct: 83 DATIAVDA-QNPLTEAIPHSLKLDV---KQGAS----GAVGFTNEGYWGVPV-DGSEFLN 133
Query: 159 VFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARL-Q 217
F+I+ S +I V L +N T S I+ +S+ SN+T+V + K+ A L +
Sbjct: 134 TFWIKGNFSGDITVRLVGNN-TGTEYGSTKISQSSNSSNFTKVLAKIPTKKAPDGAVLYE 192
Query: 218 LTTSRKGV----IWFDQVSAMPLDTYK--GHGFRNVLFQMLADLKPRFLRFPG 264
LT V + F P TYK +G + + Q LAD+K FLRFPG
Sbjct: 193 LTVDGASVGGSSLNFGLFELFP-QTYKSRSNGLKPQVAQPLADMKGSFLRFPG 244
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori
GN=abfA PE=1 SV=1
Length = 628
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 31 VEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNI 90
V+ L V G L+G FE+INH+G GG++ +L+ N G Q N+
Sbjct: 20 VQHAHGVSLKVSTQGGNSSSPILYGFMFEDINHSGDGGIYGQLLQNPGL----QGTTPNL 75
Query: 91 DPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGI 150
WA +G D+++ + D S ++++V D+ G VG+ N GYWG+ +
Sbjct: 76 TAWAAVG-DATIAIDGD-SPLTSAIPSTIKLDVADDA-------TGAVGLTNEGYWGIPV 126
Query: 151 KQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLL-EAKE 209
G ++ F+I+ S +I V L N T S I S N+T+ K
Sbjct: 127 -DGSEFQSSFWIKGDYSGDITVRLV-GNYTGTEYGSATITHTSTADNFTQASVKFPTTKA 184
Query: 210 TNPNARLQLT----TSRKGVIWFDQVSAMPLDTYKG--HGFRNVLFQMLADLKPRFLRFP 263
+ N +LT + + F ++ +TYK +G + L +LAD+K FLRFP
Sbjct: 185 PDGNVLYELTVDGSVAAGSSLNFGYLTLFG-ETYKSRENGLKPQLANVLADMKGSFLRFP 243
Query: 264 G 264
G
Sbjct: 244 G 244
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC
4308) GN=abfA PE=1 SV=2
Length = 628
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 23/241 (9%)
Query: 31 VEVNQTARLLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNI 90
V+ L V G L+G FE+INH+G GG++ +L+ N G Q N+
Sbjct: 20 VQHAHGVSLKVSTQGGNSSSPILYGFMFEDINHSGDGGIYGQLLQNPGL----QGTTPNL 75
Query: 91 DPWAIIGNDSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGI 150
WA +G D+++ + D S ++++V D+ G VG+ N GYWG+ +
Sbjct: 76 TAWAAVG-DATIAIDGD-SPLTSAIPSTIKLDVADDA-------TGAVGLTNEGYWGIPV 126
Query: 151 KQGKTYKVVFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLL-EAKE 209
G ++ F+I+ S +I V L N T S I S N+T+ K
Sbjct: 127 -DGSEFQSSFWIKGDYSGDITVRLV-GNYTGTEYGSATITHTSTADNFTQASVKFPTTKA 184
Query: 210 TNPNARLQLT----TSRKGVIWFDQVSAMPLDTYKG--HGFRNVLFQMLADLKPRFLRFP 263
+ N +LT + + F ++ +TYK +G + L +LAD+K FLRFP
Sbjct: 185 PDGNVLYELTVDGSVAAGSSLNFGYLTLFG-ETYKSRENGLKPQLANVLADMKGSFLRFP 243
Query: 264 G 264
G
Sbjct: 244 G 244
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1
SV=1
Length = 628
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 39 LLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGN 98
L V G L+G FE+INH+G GG++ +++ N G Q N+ WA +G
Sbjct: 28 LKVSTQGGNSSSPILYGFMFEDINHSGDGGIYGQMLQNPGL----QGTAPNLTAWAAVG- 82
Query: 99 DSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKV 158
D+++ + D S +++ + D+ G VG+ N GYWG+ + G +
Sbjct: 83 DATIAIDGD-SPLTSAIPSTIKLNIADDA-------TGAVGLTNEGYWGIPV-DGSEFHS 133
Query: 159 VFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLL-EAKETNPNARLQ 217
F+I+ S +I V L N T S I S N+T+ K + N +
Sbjct: 134 SFWIKGDYSGDITVRLV-GNYTGTEYGSTTITHTSTADNFTQASVKFPTTKAPDGNVLYE 192
Query: 218 LT----TSRKGVIWFDQVSAMPLDTYKG--HGFRNVLFQMLADLKPRFLRFPG 264
LT + + F ++ +TYK +G + L +L D+K FLRFPG
Sbjct: 193 LTVDGSVAAGSSLNFGYLTLFG-ETYKSRENGLKPQLANVLDDMKGSFLRFPG 244
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1
Length = 628
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 33/270 (12%)
Query: 1 MASCKVPSCGVLLLLFFIGTCFLFQCFAAEVEVNQTARLLVDASQGRPMPETLFGIFFEE 60
+A + G L LLF I +E L V G L+G FE+
Sbjct: 2 VAFSTISGLGALSLLFSI------------IESVDGVSLKVSTDGGNSSSPLLYGFMFED 49
Query: 61 INHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCFERNKVALR 120
INH+G GG++ +++ N G + N+ + WA +G+ + + +T+ + N +L+
Sbjct: 50 INHSGDGGIYGQMIQNNGLQGSSPNLTA----WASVGDGTISVDTTNPLTAAIPN--SLK 103
Query: 121 MEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLTSSNGL 180
+++ D+ G VG N GYWG+ + G ++ F+++ S I V L N
Sbjct: 104 LDIKPDA-------TGAVGFTNEGYWGIPV-DGTEFQNSFWMKGDFSGEITVRLV-GNET 154
Query: 181 QTLATSNIIASASDVSNWTRVETLLE-AKETNPNARLQLTT---SRKGVIWFDQVSAMPL 236
T S +S ++T+V K + N +LT S +G + +
Sbjct: 155 GTEYGSTTFNQSSSSDDYTKVSVKFPTTKAPDGNVLYELTVDGESAQGSSLSFTLFELFA 214
Query: 237 DTYK--GHGFRNVLFQMLADLKPRFLRFPG 264
TYK +G + L L +K FLRFPG
Sbjct: 215 QTYKSRSNGLKPQLADALESVKGSFLRFPG 244
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1
Length = 628
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 39 LLVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGN 98
L V G L+G FE+INH+G GG++ +++ N G Q N+ WA +G
Sbjct: 28 LKVSTQGGNSSSPILYGFMFEDINHSGDGGIYGQMLQNPGL----QGTAPNLTAWAAVG- 82
Query: 99 DSSLIVSTDRSSCFERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKV 158
D+++ + D S +++ + D+ G VG+ N GYWG+ + G +
Sbjct: 83 DATIAIDGD-SPLTSAIPSTIKLNIADDA-------TGAVGLTNEGYWGIPV-DGSEFHS 133
Query: 159 VFYIRSLGSVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLL-EAKETNPNARLQ 217
F+I+ S +I V L N T S I S N+T+ K + N +
Sbjct: 134 SFWIKGDYSGDITVRLV-GNYTGTEYGSTTITHTSTADNFTQASVKFPTTKAPDGNVLYE 192
Query: 218 LT----TSRKGVIWFDQVSAMPLDTYKG--HGFRNVLFQMLADLKPRFLRFPG 264
LT + + F ++ +TYK +G + L +L D+K FLRFPG
Sbjct: 193 LTVDGSVAAGSSLNFGYLTLFG-ETYKSRENGLKPQLANVLDDMKGSFLRFPG 244
>sp|Q5BA89|ABFA_EMENI Probable alpha-N-arabinofuranosidase A OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=abfA PE=3 SV=1
Length = 565
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 116 KVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLGSVNILVSLT 175
K +L + V D++G VG N GY G+ + + +TY FY++ S +L+ LT
Sbjct: 8 KSSLSVSVRADAKGL-------VGFANTGYNGITVLK-QTYWTSFYMKGEYSGTVLLRLT 59
Query: 176 SSNGLQTLATSNIIASASDVSNWTRVETLLEAKETN-PNARLQL----TTSRKGVIWFDQ 230
++ + N+ ++ WT+ ET EA E+ QL T++ + F
Sbjct: 60 GTDSGTVYGSRNLSVKSTG-GKWTQYETTFEANESYVAENEWQLLFDAATAKGHPLHFGL 118
Query: 231 VSAMPLDTYKG--HGFRNVLFQMLADLKPRFLRFPG 264
V P TYK +G RN + + +ADLKP+FLRFPG
Sbjct: 119 VQLFP-PTYKNRTNGLRNDIARPIADLKPKFLRFPG 153
>sp|P51584|XYNY_CLOTM Endo-1,4-beta-xylanase Y OS=Clostridium thermocellum GN=xynY PE=1
SV=1
Length = 1077
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 39/218 (17%)
Query: 53 LFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNIDPWAIIGNDSSLIVSTDRSSCF 112
L G+FF + + L+A+ +E N D W +G D+ L +
Sbjct: 16 LLGVFF--VLPSNISQLYAD------YEVVHDTFEVNFDGWCNLGVDTYLTAVEN----- 62
Query: 113 ERNKVALRMEVLCDSQGTNICPVGGVGVYNPGYWGMGIKQGKTYKVVFYIRSLG------ 166
E N M V+ S ++ G Y+ G + G YK +++ G
Sbjct: 63 EGNNGTRGMMVINRSSASD-------GAYSEK--GFYLDGGVEYKYSVFVKHNGTGTETF 113
Query: 167 --SVNILVSLTSSNGLQTLATSNIIASASDVSNWTRVETLLEAKETNPNARLQLTTSRKG 224
SV+ L S T + +AT +++A WT + +A +T N L +TT
Sbjct: 114 KLSVSYLDSETEEENKEVIATKDVVAGE-----WTEISAKYKAPKTAVNITLSITTDSTV 168
Query: 225 VIWFDQVSAMPLDTYKGHGFRNVLFQMLADLKPRFLRF 262
FD V+ T KG N ++ A LK + +
Sbjct: 169 DFIFDDVTI----TRKGMAEANTVYAANAVLKDMYANY 202
>sp|Q4L661|PLSY_STAHJ Glycerol-3-phosphate acyltransferase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=plsY PE=3 SV=1
Length = 202
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 226 IWFDQVSAMPLDTYKGHGFRNVLFQMLADLKPRFLRFPG 264
IWF + PL T+ HG LF +L + P +LRF G
Sbjct: 72 IWFPVHADGPLSTFFTHGLIVGLFAILGHVYPIYLRFKG 110
>sp|Q8R4V5|OIT3_MOUSE Oncoprotein-induced transcript 3 protein OS=Mus musculus GN=Oit3
PE=2 SV=2
Length = 546
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 102 LIVSTDRSSCFERNKVALRMEVLCDSQGTNICP----VGGVGVYNPGYWGMGIKQGKTYK 157
L++S D +C ++ VLC S + VGG+ ++ G+ G
Sbjct: 253 LVLSEDNHTC--------QVPVLCKSSAIEVSVPRELVGGLELFLTNTSCRGVSNGTHVN 304
Query: 158 VVFYIRSLGSVNILVS--LTSSNGLQTL------ATSNIIASASDV-----SNWTRVETL 204
+VF +++ G+V +V+ + +SN + L ++ +II S + + R+ T+
Sbjct: 305 IVFSLKTCGTVVDVVNDKIVASNIVTGLPKETPGSSGDIIIRTSKLLIPVTCEFPRLYTI 364
Query: 205 LEAKETN-PNARLQLTTSRKGVIWFDQVSAMPLDTYKGHGFRNVLFQMLADLKPRFLRFP 263
E N NA L++ + G+ F L+ +K H F + L LK R +
Sbjct: 365 SEGYVPNLRNAPLEIRSRNHGIFPFT------LEIFKDHEFEEPYRETLPTLKLRDSLYF 418
Query: 264 GI 265
GI
Sbjct: 419 GI 420
>sp|Q6V0K7|OIT3_RAT Oncoprotein-induced transcript 3 protein OS=Rattus norvegicus
GN=Oit3 PE=2 SV=1
Length = 546
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 102 LIVSTDRSSCFERNKVALRMEVLCDSQGTNICP----VGGVGVYNPGYWGMGIKQGKTYK 157
L++S D +C ++ VLC S + VGG+ ++ G+ G
Sbjct: 253 LVLSEDNHTC--------QVPVLCKSSAIEVSVPRELVGGLELFLTNTSCRGVSNGTHVN 304
Query: 158 VVFYIRSLGSVNILVS--LTSSN---GL--QTLATS-NIIASASDV-----SNWTRVETL 204
++F +++ G+V +V+ + +SN GL QT +S +II S + + R+ T+
Sbjct: 305 IIFSLKTCGTVVDVVNDKIVASNLVTGLPKQTPGSSGDIIIRTSKLLIPVTCEFPRLYTI 364
Query: 205 LEAKETN-PNARLQLTTSRKGVIWFDQVSAMPLDTYKGHGFRNVLFQMLADLKPRFLRFP 263
E N NA L++ + G+ F L+ +K H F + L LK R +
Sbjct: 365 SEGYVPNLRNAPLEIRSRNHGIFPFT------LEIFKDHEFEEPYRETLPTLKLRDSLYF 418
Query: 264 GI 265
GI
Sbjct: 419 GI 420
>sp|A6VQT2|DCUP_ACTSZ Uroporphyrinogen decarboxylase OS=Actinobacillus succinogenes
(strain ATCC 55618 / 130Z) GN=hemE PE=3 SV=1
Length = 354
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 40 LVDASQGRPMPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGQNIPSNI-DPWAIIGN 98
L+ + GR +P TLF GGLW E ++N G +A G + N+ + A IG+
Sbjct: 234 LIRENDGRKVPITLF---------TKGGGLWLEQIANSGCDAVGVDWTVNLAEAKAKIGH 284
Query: 99 DSSLIVSTDRSSCFERNKVALRMEV 123
+L + D S + R +R EV
Sbjct: 285 KVALQGNMDPSVLYAR-PARIRQEV 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,057,309
Number of Sequences: 539616
Number of extensions: 3798485
Number of successful extensions: 7646
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7612
Number of HSP's gapped (non-prelim): 22
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)