BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024628
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 322 bits (826), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 149/242 (61%), Positives = 182/242 (75%), Gaps = 1/242 (0%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+S+++S F + LH++D AC AKGFYTYD+F+ A + FP FG GS RKR++AAFL
Sbjct: 3 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFL 62
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
AQ SHETTGGWATAPDG FAWG CFK+E +DYC S +WPC PGK Y GRGPIQLS
Sbjct: 63 AQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSA-QWPCAPGKRYYGRGPIQLS 121
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
NYNYGPAG+A+G D LRNP++VA + ++FKTALWFWMT Q PKPS H V+ GK+ P+
Sbjct: 122 HNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSG 181
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD AA R GFG++TNIINGGLECG D RV DRIG+++RY +L V G+NLDC NQ+
Sbjct: 182 ADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQR 241
Query: 264 SF 265
F
Sbjct: 242 PF 243
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 320 bits (820), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 149/242 (61%), Positives = 183/242 (75%), Gaps = 1/242 (0%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
I ++S+ +F + H+++ ACPAKGFYTYD+FI A FP FG GS RKREIAAFL
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFL 61
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
Q SHETTGGW +APDGP+AWG CF +E P S+YC S R +PC PGKSY GRGPIQLS
Sbjct: 62 GQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR-YPCAPGKSYYGRGPIQLS 120
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
WNYNYGP G+AL + L NP++VA + +I+FKTALWFWMT Q PKPSCH+V+ G++ P+
Sbjct: 121 WNYNYGPCGEALRVNLLGNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSA 180
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD AA R G+G++TNIINGGLECG + +V DRIG+FRRY +L V TGNNLDC NQ+
Sbjct: 181 ADTAAGRLPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDCYNQR 240
Query: 264 SF 265
F
Sbjct: 241 PF 242
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/242 (60%), Positives = 182/242 (75%), Gaps = 1/242 (0%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+S++VS+ F + LH++D AC AKGFYTYD+F+ A + FP FG GS +KRE+AAFL
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFL 61
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
AQ SHETTGGWATAPDG FAWG CFK+E SDYC S +WPC PGK Y GRGPIQLS
Sbjct: 62 AQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSA-QWPCAPGKRYYGRGPIQLS 120
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
NYNYGPAG+A+G D L NP++VA ++ + FKTA+WFWMT Q PKPS H V+ G++ P+
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSG 180
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD AA R GFG++TNIINGG+ECG D RV DRIG+++RY +L V GNNLDC +Q+
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQR 240
Query: 264 SF 265
F
Sbjct: 241 PF 242
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 146/242 (60%), Positives = 183/242 (75%), Gaps = 1/242 (0%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+S++VS+ F + LH++D AC AKGFYTYD+F+ A + F FG GS +KRE+AAFL
Sbjct: 2 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAFL 61
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
AQ SHETTGGWATAPDG FAWG CFK+E SDYC S +WPC PGK Y GRGPIQLS
Sbjct: 62 AQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSA-QWPCAPGKRYYGRGPIQLS 120
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
NYNYGPAG+A+G D L NP++VA ++ ++FKTA+WFWMT Q PKPS H V++G++ P+
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPSG 180
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD AA R GFG++TNIINGG+ECG D RV DRIG+++RY +L V GNNLDC +Q+
Sbjct: 181 ADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQR 240
Query: 264 SF 265
F
Sbjct: 241 PF 242
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 177/242 (73%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+S ++S++ F + H +DN C A GF+TYD+FI A FP FGN G LA RK+EIAAF
Sbjct: 2 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFF 61
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
Q SHETTGGW+ APDG WG C+KEE+ +CDS+N +WPC PGK Y GRGP+ LS
Sbjct: 62 GQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLS 121
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
WNYNYGP G+ LG + L+NP++ +++ +IAFKTA+WFWMT Q PKPSCH+V+ ++ P+
Sbjct: 122 WNYNYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSA 181
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD++A R G+G++TNIINGGLEC + +V DRI ++ RY + VD G+N+DC+NQ+
Sbjct: 182 ADISAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQR 241
Query: 264 SF 265
F
Sbjct: 242 PF 243
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 177/242 (73%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+S ++S++ F + H +DN C A GF+TYD+FI A FP FGN G LA RK+EIAAF
Sbjct: 5 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFF 64
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
Q SHETTGGW+ APDG WG C+KEE+ +CDS+N +WPC PGK Y GRGP+ LS
Sbjct: 65 GQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLS 124
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
WNYNYGP G+ LG + L+NP++ +++ +IAFKTA+WFWMT Q PKPSCH+V+ ++ P+
Sbjct: 125 WNYNYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSA 184
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD++A R G+G++TNIINGGLEC + +V DRI ++ RY + VD G+N+DC+NQ+
Sbjct: 185 ADISAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQR 244
Query: 264 SF 265
F
Sbjct: 245 PF 246
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 299 bits (765), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 176/242 (72%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+S ++S++ F + H +DN C A GF+TYD+FI A FP FGN G LA RK+EIAAF
Sbjct: 4 LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFF 63
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
Q SHETTGGW+ APDG WG C+KE + +CDS+N +WPC PGK Y GRGP+ LS
Sbjct: 64 GQTSHETTGGWSGAPDGANTWGYCYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLS 123
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
WNYNYGP G+ LG + L+NP++ +++ +IAFKTA+WFWMT Q PKPSCH+V+ ++ P+
Sbjct: 124 WNYNYGPCGRDLGLELLKNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSA 183
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD++A R G+G++TNIINGGLEC + +V DRI ++ RY + VD G+N+DC+NQ+
Sbjct: 184 ADISAGRLPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQR 243
Query: 264 SF 265
F
Sbjct: 244 PF 245
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 140/242 (57%), Positives = 184/242 (76%), Gaps = 1/242 (0%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+ ++V ++LF + LH++D ACPA+GFYTY++F+ A + FP FG G+ TRKRE+AAFL
Sbjct: 58 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFL 117
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
Q SHETTGGW TAPDGPF+WG CFK+E P SDYC S +WPC PG+ Y GRGPIQLS
Sbjct: 118 GQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPS-PEWPCAPGRKYYGRGPIQLS 176
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
+N+NYGPAG+A+G D L NP++VA ++ ++FKTALWFWMT Q KPS H+V+ G++ P+
Sbjct: 177 FNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSP 236
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD AA R G+G++TNI+NGGLECG D RV +RIG+++RY + TG NLDC NQ+
Sbjct: 237 ADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQR 296
Query: 264 SF 265
F
Sbjct: 297 PF 298
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 168/242 (69%), Gaps = 3/242 (1%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+ +++ LF + H++D AC KGFY+Y++FI A F FG G TRKRE+AAFL
Sbjct: 3 VGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFL 62
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
AQ SHETTGG AT+PDGP+AWG CF E + YCD S PC GKSY GRGPIQL+
Sbjct: 63 AQTSHETTGGAATSPDGPYAWGYCFVTERDKSNRYCDGSG---PCSAGKSYYGRGPIQLT 119
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
NYNY AG+ALG D + NP++VA +++++FKTALWFWMT Q KPSCH+V+ ++ P+
Sbjct: 120 HNYNYNAAGRALGVDLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTPSA 179
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD AANR GFG++TNIINGGLECG DRIG+++RY + V G NL+C +Q+
Sbjct: 180 ADKAANRVPGFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNCRDQR 239
Query: 264 SF 265
F
Sbjct: 240 PF 241
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 274 bits (700), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 127/242 (52%), Positives = 170/242 (70%), Gaps = 3/242 (1%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+ +++ LF + H++D AC KGFY+Y++F+ A F FG G TRKRE+AAFL
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
AQ SHETTGG A +PDGP+AWG CF E + YCD PC GKSY GRGPIQL+
Sbjct: 62 AQTSHETTGGAAGSPDGPYAWGYCFVTERDKSNKYCDPGT---PCPAGKSYYGRGPIQLT 118
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
NYNY AG+ALG D + NP++VA +++I+FKTA+WFWMT Q KPSCH+V+ ++ P+
Sbjct: 119 HNYNYAQAGRALGVDLINNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSA 178
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDCENQK 263
AD+AANRT GFG++TNIINGG+ECG DRIG+++RY +L++ G NL+C +Q+
Sbjct: 179 ADVAANRTPGFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNCRDQR 238
Query: 264 SF 265
F
Sbjct: 239 PF 240
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 130/236 (55%), Gaps = 33/236 (13%)
Query: 24 ISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFL 83
+ ++S+ F + ++C KGFYTY++FI A + + FG GS +KRE+AAF
Sbjct: 2 VGGIISQSFFNGL-AGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFF 60
Query: 84 AQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLS 143
A + HET G LC+ E P +YC SS+ WPC GKSY GRGP+QLS
Sbjct: 61 ANVMHETGG-------------LCYINEKNPPINYCQSSST-WPCTSGKSYHGRGPLQLS 106
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTK 203
WNYNYG AGK++GFDGL NPE V +S I+FKTA+WFWM +CH+ +
Sbjct: 107 WNYNYGAAGKSIGFDGLNNPEKVGQDSTISFKTAVWFWM----KNSNCHSAIT------- 155
Query: 204 ADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259
GFG IN +EC N G V+ R+ Y+++ L VD G N+ C
Sbjct: 156 ------SGQGFGGTIKAIN-SMECNGGNSGEVSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 119/235 (50%), Gaps = 34/235 (14%)
Query: 27 LVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQI 86
+VS+ F +F ++ FYTY A S +P F N GS +K+E AAFLA +
Sbjct: 2 VVSEAQFDQMFPSRNS-------FYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANV 54
Query: 87 SHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKS-YKGRGPIQLSWN 145
HET G ++ YCD+S + + C G Y GRGP+QLSWN
Sbjct: 55 GHETGG-----------LVYVVEQNTANYPHYCDAS-QPYGCPAGNDKYYGRGPVQLSWN 102
Query: 146 YNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKP-SCHNVMIGKYVPTKA 204
+NY AG ALG D L NP++V N+S +A+KT LW+W T+ P + H+ M+
Sbjct: 103 FNYKAAGDALGIDLLNNPDLVQNDSAVAWKTGLWYWNTQTGPGTMTPHDAMV-------- 154
Query: 205 DLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259
GFG ING LEC N G+V RI + R+ +LL V+ G NL C
Sbjct: 155 -----NGAGFGETIRSINGSLECDGGNPGQVQSRIDNYERFTQLLGVEPGGNLSC 204
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 121/237 (51%), Gaps = 38/237 (16%)
Query: 27 LVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQI 86
+VS+ F +F +++ FYTY A S +P F GS +KRE AAFLA +
Sbjct: 63 VVSEAQFNQMFPNRN-------AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANV 115
Query: 87 SHETTGGWATAPDGPFAWGLCFKEEVTPQS--DYCDSSNRKWPCYPGKS-YKGRGPIQLS 143
SHET G L + +EV + YCD++ + + C G++ Y GRGPIQLS
Sbjct: 116 SHETGG-------------LFYIKEVNEANYPHYCDTT-QSYGCPAGQAAYYGRGPIQLS 161
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKP-SCHNVMIGKYVPT 202
WN+NY AG ALG + L NP +V + +A+KT LW+W ++ P + HN ++
Sbjct: 162 WNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIV------ 215
Query: 203 KADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259
GFG ING LEC N +V RI F ++ ++L TG NL C
Sbjct: 216 -------NNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 121/237 (51%), Gaps = 38/237 (16%)
Query: 27 LVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQI 86
+VS+ F +F +++ FYTY A S +P F GS +KRE AAFLA +
Sbjct: 63 VVSEAQFNQMFPNRN-------AFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANV 115
Query: 87 SHETTGGWATAPDGPFAWGLCFKEEVTPQS--DYCDSSNRKWPCYPGKS-YKGRGPIQLS 143
SH+T G L + +EV + YCD++ + + C G++ Y GRGPIQLS
Sbjct: 116 SHQTGG-------------LFYIKEVNEANYPHYCDTT-QSYGCPAGQAAYYGRGPIQLS 161
Query: 144 WNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKPKP-SCHNVMIGKYVPT 202
WN+NY AG ALG + L NP +V + +A+KT LW+W ++ P + HN ++
Sbjct: 162 WNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIV------ 215
Query: 203 KADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259
GFG ING LEC N +V RI F ++ ++L TG NL C
Sbjct: 216 -------NNAGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 136 GRGPIQLSWN-------YNYGPAGKALGFDGLRNPEIVANNSLI 172
G P+Q S N Y P G +GF G +NP V SL+
Sbjct: 115 GGHPVQQSPNEISPFEVYTVDPLGSLIGFSGFKNPFAVNERSLL 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,443,537
Number of Sequences: 62578
Number of extensions: 363875
Number of successful extensions: 649
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 16
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)