Query 024628
Match_columns 265
No_of_seqs 189 out of 878
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00325 chitinase_glyco_hydro_ 100.0 2.5E-77 5.5E-82 532.6 18.8 230 28-259 1-230 (230)
2 PF00182 Glyco_hydro_19: Chiti 100.0 1.3E-77 2.9E-82 535.8 14.5 232 27-259 1-232 (232)
3 KOG4742 Predicted chitinase [G 100.0 4.3E-66 9.4E-71 466.9 13.8 226 20-259 58-286 (286)
4 COG3179 Predicted chitinase [G 100.0 8.7E-35 1.9E-39 248.6 8.4 182 26-249 2-204 (206)
5 cd00442 lysozyme_like lysozyme 99.5 8.1E-15 1.7E-19 115.8 3.7 90 80-193 1-90 (105)
6 PF09447 Cnl2_NKP2: Cnl2/NKP2 52.3 11 0.00024 27.7 1.9 22 21-42 13-34 (67)
7 cd08327 CARD_RAIDD Caspase act 31.1 25 0.00055 27.3 1.1 39 26-64 34-80 (94)
8 PF02705 K_trans: K+ potassium 30.5 32 0.0007 34.9 2.0 45 132-181 224-276 (534)
9 KOG3625 Alpha amylase [Carbohy 28.8 36 0.00078 37.1 2.1 46 136-183 1091-1143(1521)
10 TIGR00794 kup potassium uptake 27.0 39 0.00085 35.4 2.0 45 132-181 261-313 (688)
11 PF13670 PepSY_2: Peptidase pr 23.5 95 0.0021 22.9 3.0 34 5-38 6-39 (83)
12 PRK10745 trkD potassium transp 21.8 54 0.0012 34.0 1.8 49 132-181 235-287 (622)
13 PF04651 Pox_A12: Poxvirus A12 20.9 87 0.0019 27.4 2.6 29 51-91 9-37 (189)
No 1
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=2.5e-77 Score=532.63 Aligned_cols=230 Identities=63% Similarity=1.216 Sum_probs=220.9
Q ss_pred cCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccCCCccCCCCCCCccCcc
Q 024628 28 VSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLC 107 (265)
Q Consensus 28 it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~~~~~w~~~ 107 (265)
||+++|++|||+|++..||+++||||++||+|+++||+|+++|+.+++|||+||||||++|||++++...+.+++.|++|
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999986665566788999999
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHHHhcCCC
Q 024628 108 FKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQKP 187 (265)
Q Consensus 108 ~~~E~~~~~~yc~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~~ 187 (265)
+.+|..+...||.. .+|||+||++|||||+||||||+||++++++++.|||+|||+|++||.+|+++|+||||+++.+
T Consensus 81 ~~~e~~~~~~~~~~--~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~~~~ 158 (230)
T cd00325 81 DKSETGPPSSYCDP--AQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTPQGP 158 (230)
T ss_pred ccccCCCccccccc--CCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeCCCC
Confidence 99999887788876 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCC
Q 024628 188 KPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259 (265)
Q Consensus 188 ~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c 259 (265)
||+||+||+|+|+|+.+|.++.+.++|+.||+|||||+||++++.+++.+|+++|+++|++|||+||+||+|
T Consensus 159 k~s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C 230 (230)
T cd00325 159 KPSCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230 (230)
T ss_pred CCCcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=1.3e-77 Score=535.77 Aligned_cols=232 Identities=58% Similarity=1.153 Sum_probs=201.0
Q ss_pred ccCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccCCCccCCCCCCCccCc
Q 024628 27 LVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDGPFAWGL 106 (265)
Q Consensus 27 ~it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~~~~~w~~ 106 (265)
|||+++|++|||+|+++.||+++||||++||+|+++||+|+++|+.+++||||||||||++|||++++...+.+++.|++
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999998766666777899999
Q ss_pred ceecccCCCCCCCCCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHHHhcCC
Q 024628 107 CFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFWMTEQK 186 (265)
Q Consensus 107 ~~~~E~~~~~~yc~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW~~~~~ 186 (265)
|+.+|......||+.. ..+||+||++|||||+|||||++||++++++++.|||+|||+|++||.+||++|+||||+++.
T Consensus 81 c~~~e~~~~~~y~~~~-~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~~~~ 159 (232)
T PF00182_consen 81 CYKREKGANSDYCNRN-GNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMTPQP 159 (232)
T ss_dssp S-SB-SS-SSGG--TT-SSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHHSBT
T ss_pred ccccccCCccccccCc-cCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheeecCC
Confidence 9999988878999753 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCC
Q 024628 187 PKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRRYAKLLNVDTGNNLDC 259 (265)
Q Consensus 187 ~~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~~~~~Lgv~~g~~l~c 259 (265)
+||+||+||+++|+|+.+|.++++.++||.||+|||||+||+++++.++.+||++|+++|++|||+||+||+|
T Consensus 160 ~~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 160 PKPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp TBSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred CccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999988999999999999999999999999999
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=4.3e-66 Score=466.92 Aligned_cols=226 Identities=58% Similarity=1.039 Sum_probs=214.6
Q ss_pred CCcccccccCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccCCCccCCCC
Q 024628 20 RDPLISNLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPD 99 (265)
Q Consensus 20 ~~~~v~~~it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~ 99 (265)
+...++++||+++|+.||++++..+|++++||||+.|+.|+++||+|+.+|+.++.+||+|+||||+.|||++||..+++
T Consensus 58 p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~ 137 (286)
T KOG4742|consen 58 PASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPR 137 (286)
T ss_pred CcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCC
Confidence 56779999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcceecccCC-CCCCCCCCCCC-CCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChhHhhcChHHHHHHH
Q 024628 100 GPFAWGLCFKEEVTP-QSDYCDSSNRK-WPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFKTA 177 (265)
Q Consensus 100 ~~~~w~~~~~~E~~~-~~~yc~~~n~~-~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA 177 (265)
|+|.|+|||.+|+.. ...||+.+++. |||..|+.|+|||+|||+|||||++++++|++|||++||+|++||.+||++|
T Consensus 138 G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~a 217 (286)
T KOG4742|consen 138 GPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAA 217 (286)
T ss_pred CccccCcccccccChhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhhee
Confidence 999999999999988 68999988777 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCC-chHHHHHHHHHHHHHHcCCCCCCC
Q 024628 178 LWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPND-GRVNDRIGYFRRYAKLLNVDTGNN 256 (265)
Q Consensus 178 ~wfW~~~~~~~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~-~~~~~R~~~y~~~~~~Lgv~~g~~ 256 (265)
+||||++ |.|..+|.++.+.++||.||++|||++||++++. ...++||.+|+.+|++|||+||+|
T Consensus 218 lWfwmt~--------------~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~n 283 (286)
T KOG4742|consen 218 LWFWMTP--------------VRPVLNDFAAYDTPGFGATTRAINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPN 283 (286)
T ss_pred eeeeccC--------------CchhhhhhhcccCCCcchhhhhhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCC
Confidence 9999987 5566788888899999999999999999998874 456669999999999999999999
Q ss_pred CCC
Q 024628 257 LDC 259 (265)
Q Consensus 257 l~c 259 (265)
|+|
T Consensus 284 LsC 286 (286)
T KOG4742|consen 284 LSC 286 (286)
T ss_pred CCC
Confidence 999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=248.59 Aligned_cols=182 Identities=29% Similarity=0.421 Sum_probs=140.7
Q ss_pred cccCHHHHHHHhccCCCCCCCCCCccCHHHHHHHHhc-CcccccCCCchhhhHHHHHHhhhcccccCCCccCCCCC-CCc
Q 024628 26 NLVSKELFAAIFLHKDDNACPAKGFYTYDSFIQATSC-FPRFGNVGSLATRKREIAAFLAQISHETTGGWATAPDG-PFA 103 (265)
Q Consensus 26 ~~it~~~f~~ifp~r~~~~~~~~~~yty~~fi~A~~~-~~~f~~~g~~~~~~re~A~FLAq~~hET~~g~~~~~~~-~~~ 103 (265)
..||+.+|.+|||+... . ...++.|+.. ...| .|+++.| +||||||+.|||+ |++.+.|+ .|+
T Consensus 2 ~~i~e~~~~ki~p~a~k------~---~~~v~~al~~~l~~~----gi~~p~r-~AmFlAQ~~HESg-gf~rl~EnlnYS 66 (206)
T COG3179 2 KTITEVDLRKIFPKARK------E---FVDVIVALQPALDEA----GITTPLR-QAMFLAQVMHESG-GFTRLDENLNYS 66 (206)
T ss_pred cchhHHHHHHhcchhhh------h---hHHHHHHHHHHHHHh----cCCCHHH-HHHHHHHHhhhcC-CceeehhhcchH
Confidence 46899999999997531 1 2344555542 2234 4778888 9999999999996 78776653 343
Q ss_pred c-------Cccee-----cccCCC------CCCC-CCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCCCCChh
Q 024628 104 W-------GLCFK-----EEVTPQ------SDYC-DSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPE 164 (265)
Q Consensus 104 w-------~~~~~-----~E~~~~------~~yc-~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl~~~Pd 164 (265)
| .-+|. +|+... ..|- +++|.+...+|||.|||||+|||||+.||..+++++|.||+.+|+
T Consensus 67 aq~L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~ 146 (206)
T COG3179 67 AQGLLQTFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPG 146 (206)
T ss_pred HHHHHHhccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChh
Confidence 3 22332 333321 2332 578888889999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHHhcCCCCCCccccccccccCChhhhhhccCCCccchhhhhcCCccCCCCCCchHHHHHHHHHH
Q 024628 165 IVANNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTKADLAANRTVGFGLVTNIINGGLECGIPNDGRVNDRIGYFRR 244 (265)
Q Consensus 165 lva~d~~~a~~sA~wfW~~~~~~~ps~h~~~~g~w~p~~~D~~~~~~~~f~~~t~iINGg~ec~~~~~~~~~~R~~~y~~ 244 (265)
++..+ .++..+|+|||.+...++ .+| .+++..||++||||.+ |+.+|...|++
T Consensus 147 ~~~~~-~~~a~~a~wyw~~~g~n~--------------~aD-----~gd~~~VT~~INGG~N-------G~~dR~~r~~~ 199 (206)
T COG3179 147 QLELD-PHAARVAAWYWKTRGLNA--------------LAD-----EGDLVRVTRKINGGLN-------GLDDRLARYRR 199 (206)
T ss_pred hhccC-hHhhhhHHHHHHhccHHH--------------hhc-----cCChhhhhhhhcCccc-------cHHHHHHHHHH
Confidence 99985 578899999999987654 345 3789999999999997 99999999998
Q ss_pred HHHHc
Q 024628 245 YAKLL 249 (265)
Q Consensus 245 ~~~~L 249 (265)
+..++
T Consensus 200 a~~v~ 204 (206)
T COG3179 200 ASGVL 204 (206)
T ss_pred Hhccc
Confidence 87654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.51 E-value=8.1e-15 Score=115.78 Aligned_cols=90 Identities=20% Similarity=0.073 Sum_probs=75.4
Q ss_pred HHHhhhcccccCCCccCCCCCCCccCcceecccCCCCCCCCCCCCCCCCCCCCCcccCCCccccchhhHHHHHHHhCCCC
Q 024628 80 AAFLAQISHETTGGWATAPDGPFAWGLCFKEEVTPQSDYCDSSNRKWPCYPGKSYKGRGPIQLSWNYNYGPAGKALGFDG 159 (265)
Q Consensus 80 A~FLAq~~hET~~g~~~~~~~~~~w~~~~~~E~~~~~~yc~~~n~~~~~~dG~~Y~GRG~iQLT~~~NY~~~~~~~g~dl 159 (265)
|.|.++.+|||.+ ++..++. .|| ||..|..|+|||+||+||++||...++.+++|+
T Consensus 1 a~~~~i~~~E~~~-------------~~~~~~~----Gy~-------~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~ 56 (105)
T cd00442 1 AIIDMLASSEGTD-------------LKAYKDR----GHG-------TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKL 56 (105)
T ss_pred ChhhhhhhcccCC-------------CcccccC----CCC-------CCCCCCcccccCceeeeeccCccccccccCcch
Confidence 5788999999963 3333331 366 677788999999999999999999999999999
Q ss_pred CCChhHhhcChHHHHHHHHHHHHhcCCCCCCccc
Q 024628 160 LRNPEIVANNSLIAFKTALWFWMTEQKPKPSCHN 193 (265)
Q Consensus 160 ~~~Pdlva~d~~~a~~sA~wfW~~~~~~~ps~h~ 193 (265)
+++|++++.++.+++..+.||||.....++++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~n~~~~~~~ 90 (105)
T cd00442 57 LAQLILKLFNPKVQDKQALQQIKNAGALIMSSFR 90 (105)
T ss_pred hcCcchhccCchHHHHHHHHHHHhccCCCCcccc
Confidence 9999999999999999999999997766666554
No 6
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=52.31 E-value=11 Score=27.74 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=18.6
Q ss_pred CcccccccCHHHHHHHhccCCC
Q 024628 21 DPLISNLVSKELFAAIFLHKDD 42 (265)
Q Consensus 21 ~~~v~~~it~~~f~~ifp~r~~ 42 (265)
.+.+.++||-++|.++||.+..
T Consensus 13 ~s~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 13 PSSLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred cCccccccCHHHHHHHccccCC
Confidence 3678899999999999997653
No 7
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=31.05 E-value=25 Score=27.34 Aligned_cols=39 Identities=15% Similarity=0.390 Sum_probs=27.6
Q ss_pred cccCHHHHHHHhccCCCC--------CCCCCCccCHHHHHHHHhcCc
Q 024628 26 NLVSKELFAAIFLHKDDN--------ACPAKGFYTYDSFIQATSCFP 64 (265)
Q Consensus 26 ~~it~~~f~~ifp~r~~~--------~~~~~~~yty~~fi~A~~~~~ 64 (265)
.+||+++.+.|-...... --|.+|...|..|++|+..||
T Consensus 34 gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 34 GILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 488998888886433211 035667888999999998765
No 8
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=30.55 E-value=32 Score=34.94 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=32.7
Q ss_pred CCcccCCCccccchh--------hHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHH
Q 024628 132 KSYKGRGPIQLSWNY--------NYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFW 181 (265)
Q Consensus 132 ~~Y~GRG~iQLT~~~--------NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW 181 (265)
-.++||.+||++|-. ||-.=+.+ |++||+.+. ||-+......++|
T Consensus 224 mGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~----ll~~p~~~~-npFf~~~P~~~~~ 276 (534)
T PF02705_consen 224 MGHFGRKPIRIAWFFLVFPALLLNYFGQGAL----LLSHPEAVS-NPFFLLIPEWLLW 276 (534)
T ss_pred hccccchhhhhhHHHHHHHHHHHHHccHHHH----HHcCcchhh-hHHHHHhHHHHHH
Confidence 358999999999987 55433333 788998775 6877776665666
No 9
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=28.85 E-value=36 Score=37.09 Aligned_cols=46 Identities=17% Similarity=0.427 Sum_probs=32.9
Q ss_pred cCCCccccchhhHHH-----HHHHhCCCCCCChhHhhc--ChHHHHHHHHHHHHh
Q 024628 136 GRGPIQLSWNYNYGP-----AGKALGFDGLRNPEIVAN--NSLIAFKTALWFWMT 183 (265)
Q Consensus 136 GRG~iQLT~~~NY~~-----~~~~~g~dl~~~Pdlva~--d~~~a~~sA~wfW~~ 183 (265)
=||.+-+||||+=.+ |+..+...|+ |.|+.. .|.+-.+-|+|||+.
T Consensus 1091 LrG~ll~TGRy~EAr~iIlaFa~tlrHGLI--PNLLd~G~~~RyNcRDA~W~wl~ 1143 (1521)
T KOG3625|consen 1091 LRGILLITGRYVEARNIILAFAGTLRHGLI--PNLLDEGIYARYNCRDAVWWWLQ 1143 (1521)
T ss_pred cccceEeecchHHHHHHHHHHHHHhhcccc--chhhhccccccccchHHHHHHHH
Confidence 379999999988544 3444445566 555543 678889999999974
No 10
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=27.02 E-value=39 Score=35.37 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCcccCCCccccch--------hhHHHHHHHhCCCCCCChhHhhcChHHHHHHHHHHH
Q 024628 132 KSYKGRGPIQLSWN--------YNYGPAGKALGFDGLRNPEIVANNSLIAFKTALWFW 181 (265)
Q Consensus 132 ~~Y~GRG~iQLT~~--------~NY~~~~~~~g~dl~~~Pdlva~d~~~a~~sA~wfW 181 (265)
-.++||.+||++|- -||-.=+.+ |+.||+.+. ||-+.......+|
T Consensus 261 mGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~----ll~~p~~~~-NpFf~~~P~~~~~ 313 (688)
T TIGR00794 261 LGHFGKLPIQLAWFTFVYPSLILCYIGQAAY----LSKHPEAIK-NPFFLSIPDWALW 313 (688)
T ss_pred cCCCCcccceeehHHHHHHHHHHHHcchHHH----HhcCcchhc-CcHHHhCchHHHH
Confidence 45899999999998 355443434 678898764 6876665555555
No 11
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.45 E-value=95 Score=22.87 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=18.4
Q ss_pred HHHHHhhhccccccCCCcccccccCHHHHHHHhc
Q 024628 5 LVLCFATHTAEARRDRDPLISNLVSKELFAAIFL 38 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~v~~~it~~~f~~ifp 38 (265)
+++++++.+|.+...+..+....++.++..+++.
T Consensus 6 ~a~~~~a~~A~A~~~~~~p~~~~~~~~~~~~~l~ 39 (83)
T PF13670_consen 6 LAAALLAAPAFASDDSDAPPADWLSIEQAVAKLE 39 (83)
T ss_pred HHHHHHhHHhcCCCCCCCCccccCCHHHHHHHHH
Confidence 3334444445453444555566667777766663
No 12
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=21.82 E-value=54 Score=33.98 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCcccCCCccccchhhHHH--HHHHhCCC--CCCChhHhhcChHHHHHHHHHHH
Q 024628 132 KSYKGRGPIQLSWNYNYGP--AGKALGFD--GLRNPEIVANNSLIAFKTALWFW 181 (265)
Q Consensus 132 ~~Y~GRG~iQLT~~~NY~~--~~~~~g~d--l~~~Pdlva~d~~~a~~sA~wfW 181 (265)
-...||.+||++|-.=--+ .=.|+|.- +++||+.+. ||-+......++|
T Consensus 235 mGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~-NpFf~~~P~~~~~ 287 (622)
T PRK10745 235 MGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIK-NPFFLLAPDWALI 287 (622)
T ss_pred cCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchhhc-CcHHHhCChhHHH
Confidence 3579999999999742111 11233332 678898764 6766655544455
No 13
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=20.91 E-value=87 Score=27.45 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=22.8
Q ss_pred cCHHHHHHHHhcCcccccCCCchhhhHHHHHHhhhcccccC
Q 024628 51 YTYDSFIQATSCFPRFGNVGSLATRKREIAAFLAQISHETT 91 (265)
Q Consensus 51 yty~~fi~A~~~~~~f~~~g~~~~~~re~A~FLAq~~hET~ 91 (265)
-+||++|+.+++. +. + |-..|||++-|..
T Consensus 9 SSYDDYIeTinKi---------tP--Q-LrtlLahI~geq~ 37 (189)
T PF04651_consen 9 SSYDDYIETINKI---------TP--Q-LRTLLAHISGEQA 37 (189)
T ss_pred ccHHHHHHHHHHh---------CH--H-HHHHHHHhccccc
Confidence 4799999999953 22 2 6678999999985
Done!