BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024629
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/265 (82%), Positives = 237/265 (89%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH +
Sbjct: 1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 121 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
V+ISAPSKDAPMFV GVNE++Y +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV 240
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
DVSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 DVSVVDLTVRIEKAASYDAIKSAIK 265
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/264 (82%), Positives = 236/264 (89%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
GK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++
Sbjct: 1 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDI 60
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT V
Sbjct: 61 KIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKV 120
Query: 122 IISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+ISAPSKDAPMFV GVNE++Y +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH
Sbjct: 121 VISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVH 180
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTVD
Sbjct: 181 AITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD 240
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 VSVVDLTVRIEKAASYDAIKSAIK 264
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 353 bits (905), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 202/265 (76%), Gaps = 2/265 (0%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
MGKVK+G+NGFGRIGRLV R V++VA+NDPFI +YM YMF+YDS HG++ H
Sbjct: 4 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 62
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K ++ K ++ G P+T+F R+P +I W + GAEYVVESTGVFT
Sbjct: 63 VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 121
Query: 121 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
VIISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 122 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 181
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
H+ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT
Sbjct: 182 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 241
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDLT RLEK A YD+IK +K
Sbjct: 242 NVSVVDLTCRLEKPAKYDDIKKVVK 266
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 352 bits (904), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 202/265 (76%), Gaps = 2/265 (0%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
MGKVK+G+NGFGRIGRLV R V++VA+NDPFI +YM YMF+YDS HG++ H
Sbjct: 1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K ++ K ++ G P+T+F R+P +I W + GAEYVVESTGVFT
Sbjct: 60 VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 121 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
VIISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
H+ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT
Sbjct: 179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDLT RLEK A YD+IK +K
Sbjct: 239 NVSVVDLTCRLEKPAKYDDIKKVVK 263
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 348 bits (892), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/261 (67%), Positives = 206/261 (78%), Gaps = 3/261 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KIGINGFGRIGRLV R L+ ++VAVNDPFI +YM YMFKYDS HG +K E+KV+
Sbjct: 2 KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKVE 59
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT VIIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 346 bits (888), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 205/261 (78%), Gaps = 3/261 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KIGINGFGRIGRLV R L+ ++VAVNDPFI +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT VIIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 205/261 (78%), Gaps = 3/261 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KIGINGFGRIGRLV R L ++VAVNDPFI +YM YMFKYDS HG +K E+K++
Sbjct: 3 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKME 60
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT V+IS
Sbjct: 61 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 125 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT DVSV
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 239
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
VDLTVRL K+ SYD+IKAA+K
Sbjct: 240 VDLTVRLGKECSYDDIKAAMK 260
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/261 (66%), Positives = 205/261 (78%), Gaps = 3/261 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KIGINGFGRIGRLV R L ++VAVNDPFI +YM YMFKYDS HG +K E+K++
Sbjct: 2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKME 59
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 125 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT DVSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 342 bits (876), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 204/261 (78%), Gaps = 3/261 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
KIGINGFGRIGRLV R L+ ++VAVNDPFI +YM YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT VIIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 125 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
APS DAPMFV GVN +Y ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 244
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 245 VDLTVRLEKDASYDEIKAAIK 265
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 341 bits (874), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 171/262 (65%), Positives = 199/262 (75%), Gaps = 3/262 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
V I INGFGRIGRLV R+ L+R ++++VA+NDPFI+ DY YMFKYDS HG++K
Sbjct: 15 VSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGEV--S 72
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D L+ K V VF ++P +PW + G + V+STGVF V+I
Sbjct: 73 HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVI 132
Query: 124 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
+APSK APMFVVGVNE++Y E IVSNASCTTNCLAP+AK+I+D+FGI EGLMTTVHSI
Sbjct: 133 TAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTVHSI 191
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPT DVS
Sbjct: 192 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTTDVS 251
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
VVDLTV+L K A+YDEIKAA+K
Sbjct: 252 VVDLTVKLVKAATYDEIKAAVK 273
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 340 bits (873), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/264 (63%), Positives = 199/264 (75%), Gaps = 2/264 (0%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
GKVK+G++GFGRIGRLV R V++VA+NDPFI YM YMF+YDS HG++ H +
Sbjct: 1 GKVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTV 59
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
K +D K ++ G K +T+F R+PE I W + G YVVESTGVFT +
Sbjct: 60 KAEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRI 118
Query: 122 IISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+ISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH
Sbjct: 119 VISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
+ITATQKTVD PS K WRGGR A+ N+IP+STGAAKAVGKV+P L+GKLTGMAFRVPT +
Sbjct: 179 AITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTAN 238
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSV+DLT RLEK A YD+IK +K
Sbjct: 239 VSVLDLTCRLEKPAKYDDIKKVVK 262
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 340 bits (871), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 166/262 (63%), Positives = 195/262 (74%), Gaps = 2/262 (0%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY YMFKYDS HG++
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEV--S 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
DDK ++ K + + R+P +PW + + ++STGVF V+I
Sbjct: 60 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 124 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
+APS APMFV+GVNE +Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
VVDLTV+L K+ +YDEIK +K
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVK 261
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 340 bits (871), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 166/262 (63%), Positives = 195/262 (74%), Gaps = 2/262 (0%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY YMFKYDS HG++
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEV--S 67
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
DDK ++ K + + R+P +PW + + ++STGVF V+I
Sbjct: 68 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 124 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
+APS APMFV+GVNE +Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 247
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
VVDLTV+L K+ +YDEIK +K
Sbjct: 248 VVDLTVKLNKETTYDEIKKVVK 269
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 339 bits (869), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/262 (65%), Positives = 197/262 (75%), Gaps = 2/262 (0%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+G+NGFGRIGRLV R V++VA+NDPFI YM YMF+YDS HG++ H +K
Sbjct: 1 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
++ K ++ G K +T+F R+P I W + GAEYVVESTGVFT VII
Sbjct: 60 ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 124 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
SAPS DAPMFV+GVN +Y L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 243
TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT +VS
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 238
Query: 244 VVDLTVRLEKDASYDEIKAAIK 265
VVDLT RLEK A YD+IK +K
Sbjct: 239 VVDLTCRLEKAAKYDDIKKVVK 260
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 325 bits (832), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/263 (63%), Positives = 198/263 (75%), Gaps = 4/263 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGRLV RV +++ V +VAVNDPFI +YM YMFKYDS HG++K ++
Sbjct: 2 VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYKG-TVEH 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
K+ + L+ + VF + P+EIPW+ G YVVE+TGV+ VI+
Sbjct: 60 KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 124 SAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+APS DAPM V+GVNE +Y P + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
TATQKTVDGPS KDWRGGR A NIIPSSTGAAKAVGKV+P LNGKLTGMAFRVPT +V
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
SVVDLT RL + ASY IK A+K
Sbjct: 239 SVVDLTCRLAQPASYTAIKEAVK 261
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 324 bits (830), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 164/265 (61%), Positives = 196/265 (73%), Gaps = 6/265 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-EL 61
++ +GINGFGRIGRLV R +++ V++VAVNDPFI +YM YMFKYDS HG++K E
Sbjct: 7 ELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF 65
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
+ + L+ ++V+ + P++IPW G+ YVVESTGV+ V
Sbjct: 66 R---NGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 122 IISAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
+ISAPS DAPMFV+GVNEN+Y P +NIVSNASCTTNCLAPLAKVIH++FGIVEGLMTTV
Sbjct: 123 VISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTV 182
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
HS TATQKTVDGPS K WR GR A NIIP+STGAAKAV KV+P L GKLTGMAFRVPT
Sbjct: 183 HSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTP 242
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
DVSVVDLT RL + A Y IK A+K
Sbjct: 243 DVSVVDLTCRLAQPAPYSAIKEAVK 267
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 320 bits (820), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 194/265 (73%), Gaps = 8/265 (3%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVK 64
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 20 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D L K V VF ++P EIPW +GA+ V ESTGVFT VIIS
Sbjct: 80 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 125 APSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
AP KD PM+V+GVN EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
DVSVVDLT +L K AS +EI A+K
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVK 281
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 320 bits (820), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 165/265 (62%), Positives = 194/265 (73%), Gaps = 8/265 (3%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVK 64
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D L K V VF ++P EIPW +GA+ V ESTGVFT VIIS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 125 APSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
AP KD PM+V+GVN EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
DVSVVDLT +L K AS +EI A+K
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVK 286
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 316 bits (809), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 164/265 (61%), Positives = 193/265 (72%), Gaps = 8/265 (3%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVK 64
+GINGFGRIGRLV R ++R+D+ +VA+NDPF+ +YM Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D L K V VF ++P EIPW +GA+ V ESTGVFT VIIS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 125 APSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
AP KD PM+V+GVN EY P + N++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
DVSVVDLT +L K AS +EI A+K
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVK 286
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 314 bits (804), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/263 (61%), Positives = 197/263 (74%), Gaps = 5/263 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KD ++ G+K + V R+P + W E G + V E+TG+F V++
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 314 bits (804), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/263 (61%), Positives = 197/263 (74%), Gaps = 5/263 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KD ++ G+K + V R+P + W E G + V E+TG+F V++
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 314 bits (804), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/263 (61%), Positives = 197/263 (74%), Gaps = 5/263 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KD ++ G+K + V R+P + W E G + V E+TG+F V++
Sbjct: 61 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVK 261
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 310 bits (795), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 197/265 (74%), Gaps = 5/265 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
K+GINGFGRIGRLV R ++R DVE++A+NDPF++ DYM Y+ +YDSVHG + E+
Sbjct: 24 CKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYPG-EVSH 82
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KD K L+ G K VTVF + P IPW + G Y+ ESTG+F VI+
Sbjct: 83 KDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVIM 141
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP KD PMFV+GVN ++YK IVSNASCTTNCLAPLAK++HDKFGIVEGLMTTVH+
Sbjct: 142 SAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMTTVHA 201
Query: 183 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
+TA Q TVDGPS KDWR GR+A NIIP+STGAAKAVGK++P+LNGKLTGMAFRVP
Sbjct: 202 MTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFRVPVP 261
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
DVSVVDLT +L K A Y++I AA+K
Sbjct: 262 DVSVVDLTCKLAKPAKYEDIVAAVK 286
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 310 bits (793), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 160/263 (60%), Positives = 196/263 (74%), Gaps = 5/263 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DYM YM KYDS HG++ ++V
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KD ++ G+K + V R+P + W E G + V E+TG+F V++
Sbjct: 61 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ PSKD PMFV G N ++Y + +IVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVK 261
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/268 (57%), Positives = 187/268 (69%), Gaps = 5/268 (1%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
M K+GINGFGRIGRLV R R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+
Sbjct: 1 MAVTKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEV 60
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
D LL GEK V+VF ++P +IPW + + V ESTGVF
Sbjct: 61 THA--DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 118
Query: 121 VIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
VI+SAP KD P++V+G+N ++Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 119 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 178
Query: 180 VHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
VH+ TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG+AFRV
Sbjct: 179 VHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRV 238
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
P VSVVDL RL+K A Y+E+ IK
Sbjct: 239 PIGTVSVVDLVCRLQKPAKYEEVALEIK 266
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 300 bits (768), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 154/264 (58%), Positives = 186/264 (70%), Gaps = 5/264 (1%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
K+GINGFGRIGRLV R R D+E+VA+NDPF+ +++ Y+ KYDSVHGQ+
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHA- 71
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D LL GEK V+VF ++P +IPW + + V ESTGVF VI+S
Sbjct: 72 -DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 125 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 183
AP KD P++V+G+N ++Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 184 TATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG+AFRVP
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDL RL+K A Y+E+ IK
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIK 274
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 283 bits (724), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/263 (59%), Positives = 191/263 (72%), Gaps = 5/263 (1%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR+V R +R D+E+VA+ND + DY Y KYDS HG++ ++V
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYXAYXLKYDSTHGRF-DGTVEV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KD ++ G+K + V R+P + W E G + V E+TG+F V+
Sbjct: 60 KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 124 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
+ PSKD P FV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 119 TGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHA 177
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTG AFRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNV 237
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
SVVDLTVRLEK A+Y++IKAA+K
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVK 260
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/276 (54%), Positives = 184/276 (66%), Gaps = 14/276 (5%)
Query: 4 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+K+GINGFGRIGR+V + + L +++++VAV D Y Y KYDSVHG++KH
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 60 ELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
V+ISAP S A FV+GVN N Y P E ++VSNASCTTNCLAPL V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
FGI GLMTTVHS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
LTGMAFRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALK 278
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 184/276 (66%), Gaps = 14/276 (5%)
Query: 4 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+K+GINGFGRIGR+V + + L ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 60 ELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
V+ISAP S A V+GVN +EY P E ++VSNASCTTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
LTGM+FRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 263 bits (672), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 183/276 (66%), Gaps = 14/276 (5%)
Query: 4 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+K+GINGFGRIGR+V + + L ++++VAV D +Y Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 60 ELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 169
V+ISAP S A V+GVN +EY P E ++VSNAS TTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKEG 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
LTGM+FRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 260 bits (665), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 182/276 (65%), Gaps = 14/276 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+K+GINGFGRIGR+V + I + ++++VAV D +Y Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 60 ELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
VK D ++ G + V RNP ++PW + G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVI-HDK 169
V+ISAP S A V+GVN++EY P ++VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
FGI GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
LTGM+FRVPT DVSVVDLT R +D S EI AIK
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK 278
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 260 bits (665), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 182/276 (65%), Gaps = 14/276 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 59
+K+GINGFGRIGR+V + I + ++++VAV D +Y Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 60 ELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 112
VK D ++ G + V RNP ++PW + G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 113 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVI-HDK 169
V+ISAP S A V+GVN++EY P ++VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 170 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229
FGI GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 230 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
LTGM+FRVPT DVSVVDLT R +D S EI AIK
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK 278
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 179/264 (67%), Gaps = 6/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
+ ++ G K + V R+PE + W E G + VVESTG FT VII
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
SAP+K+ + V+GVN+++Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDL LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 247 bits (631), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/264 (51%), Positives = 179/264 (67%), Gaps = 6/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTG-GANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
+ ++ G K + V R+PE + W E G + VVESTG FT VII
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
SAP+K+ + V+GVN+++Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D S KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDL LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 134/264 (50%), Positives = 178/264 (67%), Gaps = 6/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVN + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNG-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
+ ++ G K + V R+PE + W E G + VVESTG FT VII
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
SAP+K+ + V+GVN+++Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D S KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDL LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/264 (50%), Positives = 178/264 (67%), Gaps = 6/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
+ ++ G K + V R+PE + W E G + VVESTG FT VII
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
SAP+K+ + V+GVN+++Y P+ + ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDL LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/264 (50%), Positives = 178/264 (67%), Gaps = 6/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+GINGFGRIGR V R L+ D+E+VAVND + + ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
+ ++ G K + V R+PE + W E G + VVESTG FT VII
Sbjct: 60 NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
SAP+K+ + V+GVN+++Y P+ + ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
VSVVDL LEK+ + +E+ AA+K
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALK 261
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 233 bits (594), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 125/265 (47%), Positives = 176/265 (66%), Gaps = 9/265 (3%)
Query: 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK 62
++ INGFGRIGRLV R+I +R D+E+VA+ND T + ++ KYDSVH ++ K
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 63 VK-DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
V+ + +L+ K + VF +P ++PW + G ++V+ESTGVF V
Sbjct: 58 VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 122 IISAPSKDAPM-FVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
II+AP+K + V+G NE++ KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTV
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTV 177
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
HS T Q+ +D P KD R RAA+ NIIP++TGAAKAV V+P + GKL GMA RVPT
Sbjct: 178 HSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP 236
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
D S+ DLTV +EK+ + +E+ A +K
Sbjct: 237 DGSITDLTVLVEKETTVEEVNAVMK 261
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 170/255 (66%), Gaps = 6/255 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR R R+++E+VA+ND ++ ++ KYDSVHG +K ++
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVEA 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
KDD ++ G K + VF ++P +IPW + G + V+E+TGVF VII
Sbjct: 61 KDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 124 SAPSKDAPMFVV-GVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+AP+K+ + VV GVNE +Y P E NI+SNASCTTNCLAP KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
+ T Q+ +D P KD+R RAA+ NI+P++TGAAKA+G+V+P L GKL G A RVP D
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 242 VSVVDLTVRLEKDAS 256
S++DLTV + K S
Sbjct: 239 GSLIDLTVVVNKAPS 253
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 173/267 (64%), Gaps = 11/267 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQ--RDDVELVAVND--PFITTDYMTYMFKYDSVHGQWKHH 59
V++ INGFGRIGR + R I++ R D+++VA+ND P T ++ +YDSVHG++
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETN---AHLLRYDSVHGRFPK- 58
Query: 60 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
E++V D T+ G P+ V VRNP E+PW E + +E TG+FT
Sbjct: 59 EVEVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAK 117
Query: 120 XVIISAPSKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
VI+SAP+ A + VV GVN ++ + ++SNASCTTNCLAP+A+V++D GI +G MT
Sbjct: 118 RVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMT 177
Query: 179 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238
T+HS T Q T+D KD RAA+ ++IP+STGAAKAVG VLP L GKL G+A RVP
Sbjct: 178 TIHSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVP 236
Query: 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265
T +VSVVDLT +++ + +E+ AI+
Sbjct: 237 TPNVSVVDLTFIAKRETTVEEVNNAIR 263
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 213 bits (543), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 119/271 (43%), Positives = 175/271 (64%), Gaps = 12/271 (4%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
G +K+ INGFGRIGR V ++ +R +++VA+ND + ++ KYDS G + + ++
Sbjct: 20 GSMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVY-NKKV 76
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXX-----XXXXX 116
+ +D ++ G + + + R+P+ +PWA+ G + V+ESTGVF+
Sbjct: 77 ESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHA 135
Query: 117 XXXXVIISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEG 175
VI++ P+KD V+GVN+++ +L VSNASCTTNCLAPLAKV+H+ FGI +G
Sbjct: 136 GAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQG 195
Query: 176 LMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAF 235
LMTTVH+ T Q+ +D P S D R RAA+ +IIP+STGAAKAVG VLP L GKL G +
Sbjct: 196 LMTTVHAYTNDQRILDLPHS-DLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSM 254
Query: 236 RVPTVDVSVVDLTVRL-EKDASYDEIKAAIK 265
RVP S+VDLTV+L +KD + +EI + ++
Sbjct: 255 RVPVPTGSIVDLTVQLKKKDVTKEEINSVLR 285
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 166/256 (64%), Gaps = 8/256 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R D +++V VND T++ KYDS+ G +K +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKA-D 58
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K+ D++T KP+ V R+P ++PWAE G + V+E TGVF
Sbjct: 59 VKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 118
Query: 121 VIISAPSK--DAPMFVVGVNENEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
VII+AP+K D P +VVGVNE +Y ++ NI+SNASCTTNCLAP KV+ ++ GIV+G M
Sbjct: 119 VIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTM 178
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
TT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G+A RV
Sbjct: 179 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 237
Query: 238 PTVDVSVVDLTVRLEK 253
PT +VSVVDL V +EK
Sbjct: 238 PTPNVSVVDLVVNIEK 253
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 206 bits (525), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 163/266 (61%), Gaps = 7/266 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
V++ INGFGRIGR + R I++ R D+E+VA+ND + + ++ +YDSVHG +
Sbjct: 23 SVRVAINGFGRIGRNILRAIIESGRQDIEVVALND-LGSVETNAHLLRYDSVHGCFPGTV 81
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
V D + G + VF R+P ++PW + +E TG+FT
Sbjct: 82 QVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKR 139
Query: 121 VIISAPSKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V++SAPS+ A + VV GVN E +++SNASCTTNCLAP+A+V+H+ GI +G MTT
Sbjct: 140 VLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGFMTT 199
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
+HS T Q +D +D RAA+ ++IP+STGAAKAVG VLP L G L G++ RVPT
Sbjct: 200 IHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPT 258
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDLT ++ + +EI AI+
Sbjct: 259 PNVSVVDLTFTAKRSTTIEEINTAIR 284
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 168/263 (63%), Gaps = 6/263 (2%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK 64
++ INGFGRIGR+V R ++ E+VA+N + ++ + ++ KYD+VHG++ +
Sbjct: 6 RVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDGTVEAFE 64
Query: 65 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 124
D LL K + + R+P+E+PW + G E V+E+TG F VI++
Sbjct: 65 DH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 125 APSKDAPM-FVVGVNENEYK-PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
AP K+ + VVGVNE++ + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTVH+
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242
T QK +D P KD R RA +IIP++TGAAKA+ KVLP LNGKL GMA RVPT +V
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNV 241
Query: 243 SVVDLTVRLEKDASYDEIKAAIK 265
S+VDL V +++D + + I A K
Sbjct: 242 SLVDLVVDVKRDVTVEAINDAFK 264
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 6 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 63
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 64 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 182
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 183 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 242
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 243 GSLTELTVVLEKQDVTVEQVNEAMK 267
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 11 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 68
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 69 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 127
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 128 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 187
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 188 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 247
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 248 GSLTELTVVLEKQDVTVEQVNEAMK 272
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 63 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 241
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 242 GSLTELTVVLEKQDVTVEQVNEAMK 266
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAG-GVKQASHLLKYDSILGTFDA-D 58
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K D + K + V RNP +PW + G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDL V++ K +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 161/267 (60%), Gaps = 9/267 (3%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
+++ ING+GRIGR R + + D+E+VA+ND ++ +YD+ HG++ E
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAIND-LGDAKTNAHLTQYDTAHGKFPG-E 68
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+ V D ++ G++ + V RNP E+PW E G + V+E TG FT
Sbjct: 69 VSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKK 127
Query: 121 VIISAPS-KDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 178
VIISAP KD +V GVN + K E ++SNASCTTNCLAPL K ++DK G+ GLMT
Sbjct: 128 VIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 179 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238
T+H+ T Q D +D R R+A+ + IP+ TGAA AVG VLP LNGKL G A RVP
Sbjct: 188 TIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVP 246
Query: 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265
T++VS+VDL+ ++D + E+ A +K
Sbjct: 247 TINVSIVDLSFIAKRDTTAAEVNAIMK 273
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K D + K + V RNP +PW + G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDL V++ K +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 198 bits (504), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTF-DAD 58
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K D + K + V RNP +PW + G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDL V++ K +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R D +++V +ND +++ KYDS+ G + +
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K D + K + V RNP +PW + G + V+E TGVF
Sbjct: 59 VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 121 VIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
V+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
HS T Q+ +D + +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 179 THSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDL V++ K +E+ AA +
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 164/264 (62%), Gaps = 7/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR V R++ R VE+ +ND + ++ KYDS++ ++
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
DD+ L K + V++P+EIPWAE G V+ESTGVFT VII
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+AP+K + V+GVN Y P + I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
S+ D+T L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHEL 61
K+K+ INGFGRIGR R +D +++V +ND +++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DV 58
Query: 62 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 121
K D + G K + V RNP +PW + G + V+E TGVF V
Sbjct: 59 KTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 117
Query: 122 IISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 180
+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 118 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 177
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 178 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTP 236
Query: 241 DVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDL V++ K +E+ AA +
Sbjct: 237 NVSVVDLVVQVSKKTFAEEVNAAFR 261
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 197 bits (500), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 161/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 7/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR V R++ +R VE+ +ND + ++ KYDS +G++
Sbjct: 1 MKVGINGFGRIGRQVFRILHERG-VEVALIND-LTDNKTLAHLLKYDSTYGRFPG--AVG 56
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D++ L K + +++P EIPW + G VVESTGVFT VII
Sbjct: 57 YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 124 SAPSKDAPMFVV-GVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+AP+K+ + VV GVN +Y P + +I+SNASCTTN LAP+ KV+ FG+ + LMTTVH
Sbjct: 117 TAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPT 235
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
S+ D+T L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 193 bits (490), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 160/265 (60%), Gaps = 6/265 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
VK+ INGFGRIGRL R I + + +E+VAVND D + ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 60
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
D + G K V F + ++PW + + V+E TG +T V+I
Sbjct: 61 VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 124 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182
SAP+ D V N E +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 183 ITATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 242 VSVVDLTVRLEK-DASYDEIKAAIK 265
S+ +LTV LEK D + +++ A+K
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 163/264 (61%), Gaps = 7/264 (2%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKV 63
+K+GINGFGRIGR V R++ R VE+ +ND + ++ KYDS++ ++
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG-VEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56
Query: 64 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 123
DD+ L K + V++P+EIPWAE G V+ESTGVFT VII
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 124 SAPSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 181
+AP+K + V+GVN Y P + I+SNAS TTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 182 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241
S T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 242 VSVVDLTVRLEKDASYDEIKAAIK 265
S+ D+T L+++ + +E+ AA+K
Sbjct: 236 GSISDITALLKREVTAEEVNAALK 259
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 152/243 (62%), Gaps = 13/243 (5%)
Query: 4 VKIGINGFGRIGRLVARVIL--QRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHH 59
+++ INGFGRIGR R Q D+E+VA+N+ T+D T ++ +YDSV G++
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRFNAD 59
Query: 60 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
D+ ++ K + + RNP +PW E + V+ESTGVF
Sbjct: 60 --ISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 120 XVIISAPSKDAPM--FVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
V+I+AP K + +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G
Sbjct: 118 KVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV V+P L GKL G+A R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 237 VPT 239
VPT
Sbjct: 237 VPT 239
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 152/243 (62%), Gaps = 13/243 (5%)
Query: 4 VKIGINGFGRIGRLVARVIL--QRDDVELVAVNDPFITTDYMT--YMFKYDSVHGQWKHH 59
+++ INGFGRIGR R Q D+E+VA+N+ T+D T ++ +YDSV G++
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRFNAD 59
Query: 60 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
D+ ++ K + + RNP +PW E + V+ESTGVF
Sbjct: 60 --ISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 120 XVIISAPSKDAPM--FVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 176
V+I+AP K + +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G
Sbjct: 118 KVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 177 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 236
MTT HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV V+P L GKL G+A R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 237 VPT 239
VPT
Sbjct: 237 VPT 239
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 161/266 (60%), Gaps = 6/266 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
K+K+ INGFGRIGR R R D ++++A+ND +++ KYDS G + +
Sbjct: 2 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-D 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+K + + K + V RNP +PW E G + V+E TGVF
Sbjct: 60 VKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKK 119
Query: 121 VIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 179
VII+AP K D P +VVGVN + Y + I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 VIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 179
Query: 180 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239
HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 180 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 238
Query: 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265
+VSVVDL V++ K +E+ AA +
Sbjct: 239 PNVSVVDLVVQVSKKTFAEEVNAAFR 264
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
+++ ING+GRIGR + R + D+E+VA+ND ++ +YD+ HG++
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPG-T 59
Query: 61 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 120
+ V ++ G+K + V RNP ++PW + V+E TG FT
Sbjct: 60 VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 121 VIISAPSK---DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
VIISAP DA + V GVN K ++SNAS TTNCLAPL K ++DK G+ +GLM
Sbjct: 119 VIISAPGGADVDATV-VYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLM 177
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
TTVH+ T Q D +D R R+A+ ++IP+ TGAA AVG VLP L+GKL G A RV
Sbjct: 178 TTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV 236
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
PT++VS+VDL+ +++ + +E+ +K
Sbjct: 237 PTINVSIVDLSFVAKRNTTVEEVNGILK 264
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 151/268 (56%), Gaps = 11/268 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
V++ INGFGRIGR V R + + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 61 LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
+V+ ++ LF G+ + V R+ + +PW E G + V++ TGV+
Sbjct: 59 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 120 XVIISAP-SKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
V+ S P S D VV GVN+++ + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
TT+HS Q+ +D D R RAAS +IIP T A + + P N + +A RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
PT++V+ +DL+V ++K +E+ ++
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQ 265
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 151/268 (56%), Gaps = 11/268 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
V++ INGFGRIGR V R + + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 57
Query: 61 LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
+V+ ++ LF G+ + V R+ + +PW E G + V++ TGV+
Sbjct: 58 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 117
Query: 120 XVIISAP-SKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
V+ S P S D VV GVN+++ + E IVSNASCTTNC+ P+ K++ D +GI G +
Sbjct: 118 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 177
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
TT+HS Q+ +D D R RAAS +IIP T A + + P N + +A RV
Sbjct: 178 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 236
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
PT++V+ +DL+V ++K +E+ ++
Sbjct: 237 PTINVTAIDLSVTVKKPVKANEVNLLLQ 264
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 149/268 (55%), Gaps = 11/268 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHE 60
V++ INGFGRIGR V R + + R ++ +VA+N+ M ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 61 LKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXX 119
+V+ ++ LF G+ + V R+ + +PW E G + V++ TGV+
Sbjct: 59 WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 120 XVIISAP-SKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 177
V+ S P S D VV GVN+++ + E IVSNAS TTN + P+ K++ D +GI G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTV 178
Query: 178 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237
TT+HS Q+ +D D R RAAS +IIP T A + + P N + +A RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265
PT++V+ +DL+V ++K +E+ ++
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQ 265
>pdb|2CZC|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 334
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33
KVK+G+NG+G IG+ VA + ++DD+EL+ +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGI 32
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 129 DAPMFVVGVN--ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 186
D P+ V VN + ++ I++N +CTT P+ KV+HD+ +V ++++ +++ +
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGS 161
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 129 DAPMFVVGVN--ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 186
D P+ V VN + ++ I++N +CTT P+ KV+HD+ +V ++++ +++ +
Sbjct: 120 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGS 179
>pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|B Chain B, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|C Chain C, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
pdb|3EUW|D Chain D, Crystal Structure Of A Myo-Inositol Dehydrogenase From
Corynebacterium Glutamicum Atcc 13032
Length = 344
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38
++I + G GRIG + A I D+ELV + DPFI
Sbjct: 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFI 39
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVAVN 34
+ ING+G +G+ VA I Q+DD++++ V+
Sbjct: 4 VAINGYGTVGKRVADAIAQQDDMKVIGVS 32
>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
Length = 320
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMF 47
M +++ I G+G +GR V ++I ++ D++LV + T D T +F
Sbjct: 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVF 47
>pdb|1B7G|O Chain O, Glyceraldehyde 3-phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-phosphate Dehydrogenase
Length = 340
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33
V + +NG+G IG+ VA I+++ D++LV V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGV 31
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33
K+ ING+G IG+ VA + +DD+E++ V
Sbjct: 4 KVLINGYGSIGKRVADAVSMQDDMEVIGV 32
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 209 IPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265
+PS G V V+P GK+ A VPT + + L V ++ D S D+I AIK
Sbjct: 194 VPSHHGPD--VVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIK 248
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 148 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184
I++N +C+T C K I DKFG+ + T +++
Sbjct: 151 IITNPNCSTICAVITLKPIXDKFGLEAVFIATXQAVS 187
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 129 DAPMFVVGVNEN---EYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 185
D P+ V VN E++ NI++N +C+T + K I+D GI +TT S++
Sbjct: 104 DIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162
Query: 186 ------------TQKTVDGPSSKDWRGGRAASFNIIPS 211
T K ++G ++ + +FN IP
Sbjct: 163 AGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQ 200
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii
From Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii
From Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 24 QRDDVELVAVNDP-FITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82
+R ++E + +NDP F DY + + + +E+ VK T++ K + +G+
Sbjct: 32 RRREIENLILNDPDFQHEDY--------NFLTRSQRYEVAVKKSATMV---KKMREYGIS 80
Query: 83 NPEEIPW 89
+PEEI W
Sbjct: 81 DPEEIMW 87
>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|B Chain B, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|C Chain C, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|D Chain D, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
Length = 344
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH-HEL 61
++IG+ G GRIG + A + DD L A++D + D + M + V +K HEL
Sbjct: 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISD--VREDRLREMKEKLGVEKAYKDPHEL 59
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 131 PMFV------VGVNENEYKPELNIVSNASCTTNCLAPLAKVI----HDKFGIVEGLMTTV 180
PMF+ +GVNE+ Y + I S SC + P + + H ++ L T
Sbjct: 95 PMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVINALCDTF 154
Query: 181 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG 214
H + Q D + + ++A+ PSS G
Sbjct: 155 HPL---QAIADFLTIHESFASQSATHGTHPSSLG 185
>pdb|2XZA|H Chain H, Crystal Structure Of Recombinant A.17 Antibody Fab
Fragment
pdb|2XZC|H Chain H, Crystal Structure Of Phosphonate-Modified Recombinant A.17
Antibody Fab Fragment
Length = 222
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 135 VGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD--G 192
V ++N++ +L+ V+ A A L + H+ +G +TTV S + +V
Sbjct: 72 VDTSKNQFSLKLSSVTAADTAVYYCAGLTQSSHNDANWGQGTLTTVSSASTKGPSVFPLA 131
Query: 193 PSSKDWRGGRAA 204
PSSK GG AA
Sbjct: 132 PSSKSTSGGTAA 143
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In
Complex With Galnac
Length = 444
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36
KV+I G G+ + +RDDVE+VA DP
Sbjct: 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53
>pdb|3BNK|A Chain A, X-Ray Crystal Structure Of Flavoredoxin From
Methanosarcina Acetivorans
pdb|3BNK|B Chain B, X-Ray Crystal Structure Of Flavoredoxin From
Methanosarcina Acetivorans
Length = 196
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 123 ISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIH--DKFGIVEG 175
+S + + PM VGVN++ Y PE I N S + N P + ++ D G+V G
Sbjct: 37 VSRVNANPPMLGVGVNKSHYTPE-GIAENGSFSVN--FPYSGMVKKTDYCGLVSG 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,497,555
Number of Sequences: 62578
Number of extensions: 288002
Number of successful extensions: 956
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 97
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)