Query 024629
Match_columns 265
No_of_seqs 174 out of 1470
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00023 glyceraldehyde-3-phos 100.0 3E-60 6.4E-65 419.4 27.6 262 1-265 1-265 (337)
2 PRK15425 gapA glyceraldehyde-3 100.0 6.3E-60 1.4E-64 416.4 27.9 259 3-265 2-261 (331)
3 PTZ00434 cytosolic glyceraldeh 100.0 3.7E-60 8E-65 417.8 25.9 264 1-265 1-279 (361)
4 PLN02358 glyceraldehyde-3-phos 100.0 1.1E-59 2.3E-64 417.3 29.0 262 3-265 5-267 (338)
5 PLN02272 glyceraldehyde-3-phos 100.0 7.2E-59 1.6E-63 418.2 27.9 262 3-265 85-346 (421)
6 PRK07403 glyceraldehyde-3-phos 100.0 1.1E-58 2.5E-63 408.8 26.7 259 3-265 1-264 (337)
7 PLN03096 glyceraldehyde-3-phos 100.0 3.7E-58 8E-63 411.7 27.2 260 3-265 60-322 (395)
8 PLN02237 glyceraldehyde-3-phos 100.0 1.4E-57 3.1E-62 410.1 26.5 260 3-265 75-340 (442)
9 PRK08955 glyceraldehyde-3-phos 100.0 4.1E-57 9E-62 400.2 26.5 258 3-265 2-262 (334)
10 PRK07729 glyceraldehyde-3-phos 100.0 5E-57 1.1E-61 398.7 26.9 260 1-265 1-262 (343)
11 TIGR01534 GAPDH-I glyceraldehy 100.0 6.6E-57 1.4E-61 397.9 27.0 258 5-265 1-262 (327)
12 PRK13535 erythrose 4-phosphate 100.0 4.3E-56 9.4E-61 393.6 26.1 259 3-265 1-264 (336)
13 COG0057 GapA Glyceraldehyde-3- 100.0 6.4E-56 1.4E-60 383.7 26.2 259 3-265 1-262 (335)
14 PTZ00353 glycosomal glyceralde 100.0 3.3E-55 7.2E-60 387.0 26.0 262 1-265 1-265 (342)
15 PRK08289 glyceraldehyde-3-phos 100.0 3.1E-54 6.8E-59 389.2 25.7 261 3-265 127-399 (477)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.2E-53 2.5E-58 378.1 26.5 257 5-265 1-262 (325)
17 PRK08040 putative semialdehyde 100.0 1.9E-41 4.1E-46 301.5 21.7 232 2-265 3-265 (336)
18 PRK05671 aspartate-semialdehyd 100.0 8.8E-41 1.9E-45 297.9 20.6 234 1-265 1-266 (336)
19 PRK14874 aspartate-semialdehyd 100.0 1E-40 2.2E-45 299.0 20.6 230 3-265 1-266 (334)
20 PRK06728 aspartate-semialdehyd 100.0 1.2E-40 2.6E-45 296.3 20.1 232 3-265 5-274 (347)
21 COG0002 ArgC Acetylglutamate s 100.0 2E-40 4.2E-45 289.3 16.8 237 3-265 2-267 (349)
22 TIGR01296 asd_B aspartate-semi 100.0 2.5E-39 5.4E-44 289.9 19.4 230 5-265 1-269 (339)
23 PLN02383 aspartate semialdehyd 100.0 2.3E-39 5E-44 289.9 19.1 232 3-265 7-274 (344)
24 PRK06598 aspartate-semialdehyd 100.0 1.3E-38 2.8E-43 284.8 19.9 231 4-265 2-297 (369)
25 PRK06901 aspartate-semialdehyd 100.0 7.5E-38 1.6E-42 272.9 19.3 231 1-265 1-251 (322)
26 KOG0657 Glyceraldehyde 3-phosp 100.0 7.4E-39 1.6E-43 268.7 9.4 238 25-265 8-245 (285)
27 COG0136 Asd Aspartate-semialde 100.0 3E-37 6.6E-42 269.5 18.4 232 3-264 1-265 (334)
28 TIGR01546 GAPDH-II_archae glyc 100.0 1.8E-36 3.8E-41 268.0 21.5 230 6-265 1-239 (333)
29 TIGR01850 argC N-acetyl-gamma- 100.0 6.2E-37 1.3E-41 275.5 18.5 235 4-265 1-264 (346)
30 TIGR01851 argC_other N-acetyl- 100.0 7.2E-37 1.6E-41 267.2 17.0 216 4-265 2-234 (310)
31 PRK00436 argC N-acetyl-gamma-g 100.0 3.2E-36 6.9E-41 270.7 20.4 235 3-265 2-261 (343)
32 PRK08664 aspartate-semialdehyd 100.0 2.3E-36 5.1E-41 272.4 18.5 237 1-265 1-264 (349)
33 PRK11863 N-acetyl-gamma-glutam 100.0 2.5E-36 5.4E-41 265.5 17.5 217 3-265 2-233 (313)
34 PRK04207 glyceraldehyde-3-phos 100.0 1.2E-35 2.7E-40 266.3 21.5 233 3-265 1-242 (341)
35 TIGR01745 asd_gamma aspartate- 100.0 4.1E-36 9E-41 267.8 18.1 232 4-265 1-295 (366)
36 TIGR00978 asd_EA aspartate-sem 100.0 1.3E-35 2.7E-40 266.9 19.6 235 4-265 1-261 (341)
37 PLN02968 Probable N-acetyl-gam 100.0 1.2E-34 2.6E-39 262.6 17.6 232 3-265 38-299 (381)
38 PF00044 Gp_dh_N: Glyceraldehy 100.0 2.1E-34 4.6E-39 228.4 13.2 149 4-154 1-151 (151)
39 smart00846 Gp_dh_N Glyceraldeh 100.0 6.6E-31 1.4E-35 208.8 16.6 148 4-154 1-149 (149)
40 KOG4354 N-acetyl-gamma-glutamy 99.9 1E-25 2.2E-30 186.5 11.0 229 3-265 19-259 (340)
41 KOG4777 Aspartate-semialdehyde 99.9 4.3E-24 9.3E-29 178.1 9.3 236 1-264 1-273 (361)
42 PF02800 Gp_dh_C: Glyceraldehy 99.8 1.9E-19 4.1E-24 144.3 11.1 106 159-265 1-106 (157)
43 PRK08300 acetaldehyde dehydrog 99.7 5.6E-17 1.2E-21 141.9 12.1 152 1-184 2-160 (302)
44 PF01118 Semialdhyde_dh: Semia 99.7 1.9E-17 4.2E-22 127.4 6.8 114 5-143 1-119 (121)
45 TIGR03215 ac_ald_DH_ac acetald 99.6 4E-14 8.7E-19 123.6 11.7 153 3-185 1-155 (285)
46 PF02774 Semialdhyde_dhC: Semi 99.3 1.3E-12 2.9E-17 107.7 6.3 101 163-264 1-129 (184)
47 COG0289 DapB Dihydrodipicolina 99.0 4.3E-09 9.2E-14 89.8 10.0 210 3-249 2-221 (266)
48 smart00859 Semialdhyde_dh Semi 98.9 2E-09 4.4E-14 82.6 6.8 111 5-143 1-121 (122)
49 TIGR01921 DAP-DH diaminopimela 98.8 8.8E-09 1.9E-13 91.4 8.0 90 1-124 1-90 (324)
50 PRK00048 dihydrodipicolinate r 98.8 9.6E-08 2.1E-12 82.9 11.8 198 3-248 1-211 (257)
51 PRK13303 L-aspartate dehydroge 98.7 4.4E-08 9.5E-13 85.4 8.9 90 3-123 1-90 (265)
52 PF01408 GFO_IDH_MocA: Oxidore 98.6 7.2E-08 1.6E-12 73.4 5.9 90 4-123 1-91 (120)
53 PRK13302 putative L-aspartate 98.6 1.2E-07 2.6E-12 82.9 7.8 91 1-123 4-96 (271)
54 PRK11579 putative oxidoreducta 98.6 1.6E-07 3.5E-12 84.9 8.9 91 1-123 1-93 (346)
55 PF01113 DapB_N: Dihydrodipico 98.6 1.5E-08 3.3E-13 78.1 1.9 92 4-123 1-96 (124)
56 TIGR00036 dapB dihydrodipicoli 98.6 1.4E-07 2.9E-12 82.3 7.4 95 4-123 2-97 (266)
57 PRK13301 putative L-aspartate 98.4 7.2E-07 1.6E-11 76.8 7.4 90 3-124 2-93 (267)
58 COG4569 MhpF Acetaldehyde dehy 98.4 8.4E-07 1.8E-11 72.8 6.8 142 1-168 1-144 (310)
59 COG0673 MviM Predicted dehydro 98.4 8.5E-07 1.9E-11 79.6 7.1 93 1-123 1-96 (342)
60 PRK13304 L-aspartate dehydroge 98.4 1.2E-06 2.7E-11 76.3 7.6 91 3-124 1-92 (265)
61 PRK06349 homoserine dehydrogen 98.3 1.2E-06 2.6E-11 81.4 7.1 92 1-123 1-102 (426)
62 COG1712 Predicted dinucleotide 98.3 1.7E-06 3.7E-11 72.1 7.1 90 4-124 1-91 (255)
63 PRK10206 putative oxidoreducta 98.3 2E-06 4.3E-11 77.8 6.9 91 3-123 1-93 (344)
64 PRK06270 homoserine dehydrogen 98.2 2.9E-06 6.2E-11 76.6 6.9 103 2-124 1-123 (341)
65 PLN02775 Probable dihydrodipic 98.1 1.6E-05 3.6E-10 69.3 8.1 94 3-123 11-109 (286)
66 COG4091 Predicted homoserine d 97.8 5.5E-05 1.2E-09 67.1 6.0 110 3-123 17-131 (438)
67 PF10727 Rossmann-like: Rossma 97.7 4.1E-05 8.9E-10 59.1 4.4 81 3-116 10-91 (127)
68 PRK08374 homoserine dehydrogen 97.7 4.8E-05 1E-09 68.6 4.8 102 2-118 1-116 (336)
69 PF03447 NAD_binding_3: Homose 97.7 4.4E-05 9.5E-10 58.0 3.9 81 10-118 1-84 (117)
70 PRK06813 homoserine dehydrogen 97.7 8.6E-05 1.9E-09 67.0 6.4 35 3-37 2-45 (346)
71 TIGR01761 thiaz-red thiazoliny 97.7 9.8E-05 2.1E-09 66.6 6.7 89 3-123 3-95 (343)
72 PRK06392 homoserine dehydrogen 97.7 0.00011 2.3E-09 66.0 6.5 34 4-37 1-41 (326)
73 COG0460 ThrA Homoserine dehydr 97.6 0.00024 5.2E-09 63.3 7.7 99 1-126 1-113 (333)
74 TIGR02130 dapB_plant dihydrodi 97.6 0.00032 6.9E-09 61.0 8.1 91 4-123 1-98 (275)
75 PRK05472 redox-sensing transcr 97.5 0.00027 5.9E-09 59.5 6.9 92 3-123 84-176 (213)
76 PLN02819 lysine-ketoglutarate 97.5 0.00028 6.1E-09 71.7 7.1 96 3-123 569-677 (1042)
77 KOG4039 Serine/threonine kinas 97.4 0.0008 1.7E-08 54.5 7.9 36 1-36 16-52 (238)
78 COG2344 AT-rich DNA-binding pr 97.4 0.00034 7.3E-09 57.0 5.2 91 3-122 84-175 (211)
79 PRK07634 pyrroline-5-carboxyla 97.3 0.00045 9.8E-09 59.2 6.0 84 1-114 1-87 (245)
80 KOG2741 Dimeric dihydrodiol de 97.3 0.00088 1.9E-08 59.6 7.4 93 3-123 6-101 (351)
81 COG1748 LYS9 Saccharopine dehy 97.3 0.0022 4.8E-08 58.6 9.9 123 3-155 1-124 (389)
82 PF02629 CoA_binding: CoA bind 97.2 0.00059 1.3E-08 50.0 4.9 90 3-123 3-92 (96)
83 PF03807 F420_oxidored: NADP o 97.2 0.00058 1.3E-08 49.6 4.4 88 5-124 1-92 (96)
84 PLN02700 homoserine dehydrogen 97.1 0.00057 1.2E-08 62.2 4.8 37 1-37 1-45 (377)
85 PF13460 NAD_binding_10: NADH( 97.0 0.0012 2.6E-08 53.6 5.3 87 6-123 1-95 (183)
86 PRK11880 pyrroline-5-carboxyla 97.0 0.0018 3.9E-08 56.3 6.2 83 2-115 1-84 (267)
87 PRK05447 1-deoxy-D-xylulose 5- 97.0 0.0032 7E-08 57.3 7.8 111 4-123 2-120 (385)
88 PF05368 NmrA: NmrA-like famil 96.8 0.00073 1.6E-08 57.3 2.2 96 6-126 1-103 (233)
89 PTZ00431 pyrroline carboxylate 96.8 0.0028 6.2E-08 55.0 5.8 26 1-26 1-26 (260)
90 PF03435 Saccharop_dh: Sacchar 96.7 0.0032 7E-08 57.7 5.9 140 6-171 1-141 (386)
91 PF03446 NAD_binding_2: NAD bi 96.7 0.0016 3.4E-08 52.4 3.3 32 3-36 1-32 (163)
92 PRK07417 arogenate dehydrogena 96.6 0.0041 8.8E-08 54.6 5.9 29 5-34 2-30 (279)
93 PLN02256 arogenate dehydrogena 96.6 0.0065 1.4E-07 54.1 7.0 79 1-113 34-112 (304)
94 COG3804 Uncharacterized conser 96.6 0.0095 2.1E-07 51.6 7.5 36 1-37 1-36 (350)
95 PF13380 CoA_binding_2: CoA bi 96.6 0.011 2.4E-07 44.8 7.1 80 5-123 2-85 (116)
96 COG2910 Putative NADH-flavin r 96.5 0.014 3E-07 47.7 7.3 32 4-36 1-33 (211)
97 CHL00194 ycf39 Ycf39; Provisio 96.4 0.013 2.8E-07 52.1 7.9 31 5-36 2-33 (317)
98 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.0073 1.6E-07 51.4 6.0 35 2-37 30-64 (227)
99 PRK08818 prephenate dehydrogen 96.4 0.0087 1.9E-07 54.6 6.7 68 3-114 4-72 (370)
100 PRK12491 pyrroline-5-carboxyla 96.4 0.011 2.3E-07 51.8 7.1 89 1-124 1-95 (272)
101 PRK07679 pyrroline-5-carboxyla 96.4 0.0077 1.7E-07 52.8 6.0 83 1-114 1-86 (279)
102 PRK11559 garR tartronate semia 96.3 0.006 1.3E-07 53.8 5.2 33 1-36 1-33 (296)
103 PRK07502 cyclohexadienyl dehyd 96.3 0.012 2.5E-07 52.4 6.9 33 3-36 6-39 (307)
104 COG0287 TyrA Prephenate dehydr 96.2 0.02 4.3E-07 50.3 7.6 85 2-118 2-92 (279)
105 PRK07819 3-hydroxybutyryl-CoA 96.2 0.04 8.7E-07 48.6 9.6 32 3-35 5-36 (286)
106 COG2085 Predicted dinucleotide 96.2 0.013 2.9E-07 48.8 6.0 91 3-126 1-93 (211)
107 PRK06223 malate dehydrogenase; 96.2 0.024 5.2E-07 50.3 8.0 31 3-33 2-32 (307)
108 PRK09414 glutamate dehydrogena 96.1 0.025 5.4E-07 52.8 8.0 102 3-123 232-341 (445)
109 PRK00094 gpsA NAD(P)H-dependen 96.0 0.016 3.5E-07 51.6 6.4 29 4-33 2-30 (325)
110 PLN02688 pyrroline-5-carboxyla 96.0 0.018 3.8E-07 50.0 6.4 33 4-36 1-36 (266)
111 PRK09466 metL bifunctional asp 96.0 0.0081 1.8E-07 60.2 4.6 37 1-37 456-501 (810)
112 PRK06928 pyrroline-5-carboxyla 96.0 0.016 3.6E-07 50.7 6.0 81 4-114 2-85 (277)
113 PRK08507 prephenate dehydrogen 96.0 0.017 3.7E-07 50.5 6.1 84 5-123 2-88 (275)
114 PRK06476 pyrroline-5-carboxyla 95.9 0.016 3.6E-07 50.1 5.4 32 5-36 2-34 (258)
115 PRK14618 NAD(P)H-dependent gly 95.8 0.02 4.3E-07 51.3 6.0 31 3-34 4-34 (328)
116 PF00056 Ldh_1_N: lactate/mala 95.8 0.033 7.2E-07 43.7 6.4 33 4-36 1-34 (141)
117 PRK06249 2-dehydropantoate 2-r 95.8 0.062 1.3E-06 47.9 8.9 33 1-34 3-35 (313)
118 PRK09436 thrA bifunctional asp 95.7 0.023 5.1E-07 57.2 6.7 103 3-126 465-578 (819)
119 PRK08618 ornithine cyclodeamin 95.7 0.018 3.8E-07 51.7 5.1 87 4-118 128-215 (325)
120 PRK08229 2-dehydropantoate 2-r 95.6 0.06 1.3E-06 48.4 8.4 32 1-34 1-32 (341)
121 TIGR02717 AcCoA-syn-alpha acet 95.6 0.061 1.3E-06 50.5 8.4 82 3-123 7-94 (447)
122 PTZ00082 L-lactate dehydrogena 95.5 0.027 5.9E-07 50.5 5.7 35 3-38 6-40 (321)
123 TIGR01915 npdG NADPH-dependent 95.4 0.035 7.6E-07 46.8 5.8 29 4-33 1-30 (219)
124 PRK06046 alanine dehydrogenase 95.4 0.026 5.6E-07 50.7 5.1 34 4-37 130-163 (326)
125 PLN02602 lactate dehydrogenase 95.4 0.067 1.5E-06 48.5 7.8 33 4-36 38-70 (350)
126 PTZ00117 malate dehydrogenase; 95.4 0.089 1.9E-06 47.1 8.5 34 3-37 5-38 (319)
127 PLN02712 arogenate dehydrogena 95.4 0.039 8.4E-07 54.3 6.7 31 3-34 52-82 (667)
128 PLN02696 1-deoxy-D-xylulose-5- 95.4 0.05 1.1E-06 50.6 7.0 112 3-123 57-178 (454)
129 TIGR03649 ergot_EASG ergot alk 95.3 0.051 1.1E-06 47.4 6.7 31 5-36 1-32 (285)
130 cd05294 LDH-like_MDH_nadp A la 95.3 0.074 1.6E-06 47.4 7.7 31 4-34 1-33 (309)
131 TIGR01763 MalateDH_bact malate 95.3 0.11 2.4E-06 46.3 8.6 32 4-36 2-33 (305)
132 cd05293 LDH_1 A subgroup of L- 95.3 0.074 1.6E-06 47.5 7.5 34 3-36 3-36 (312)
133 PRK15461 NADH-dependent gamma- 95.3 0.023 5E-07 50.3 4.3 31 4-36 2-32 (296)
134 PRK07680 late competence prote 95.2 0.031 6.8E-07 48.7 5.1 80 5-114 2-83 (273)
135 PLN02712 arogenate dehydrogena 95.2 0.048 1E-06 53.7 6.7 31 3-34 369-399 (667)
136 PTZ00325 malate dehydrogenase; 95.2 0.13 2.9E-06 46.0 8.9 35 2-36 7-42 (321)
137 PRK14619 NAD(P)H-dependent gly 95.2 0.044 9.6E-07 48.7 5.8 28 3-31 4-31 (308)
138 TIGR00872 gnd_rel 6-phosphoglu 95.1 0.047 1E-06 48.3 5.8 30 5-36 2-31 (298)
139 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.069 1.5E-06 42.6 6.3 91 5-115 1-91 (157)
140 COG0345 ProC Pyrroline-5-carbo 95.1 0.067 1.4E-06 46.6 6.5 89 3-124 1-93 (266)
141 cd05213 NAD_bind_Glutamyl_tRNA 95.1 0.062 1.3E-06 47.9 6.4 34 3-37 178-211 (311)
142 COG1091 RfbD dTDP-4-dehydrorha 95.1 0.028 6E-07 49.2 4.1 31 5-37 2-33 (281)
143 TIGR02853 spore_dpaA dipicolin 95.0 0.03 6.6E-07 49.4 4.4 30 4-34 152-181 (287)
144 cd05290 LDH_3 A subgroup of L- 95.0 0.1 2.2E-06 46.5 7.8 32 5-36 1-32 (307)
145 COG0039 Mdh Malate/lactate deh 95.0 0.24 5.1E-06 44.2 9.8 23 4-26 1-23 (313)
146 PRK12490 6-phosphogluconate de 94.9 0.053 1.1E-06 48.0 5.7 30 5-36 2-31 (299)
147 PF01488 Shikimate_DH: Shikima 94.9 0.032 6.9E-07 43.4 3.8 34 3-37 12-45 (135)
148 PRK06522 2-dehydropantoate 2-r 94.9 0.12 2.5E-06 45.5 7.7 31 4-35 1-31 (304)
149 PLN00016 RNA-binding protein; 94.9 0.093 2E-06 47.9 7.2 33 3-36 52-89 (378)
150 PRK07574 formate dehydrogenase 94.9 0.047 1E-06 50.1 5.2 30 4-34 193-222 (385)
151 TIGR03026 NDP-sugDHase nucleot 94.8 0.071 1.5E-06 49.4 6.4 29 5-34 2-30 (411)
152 PRK08306 dipicolinate synthase 94.7 0.063 1.4E-06 47.6 5.6 31 3-34 152-182 (296)
153 PRK05678 succinyl-CoA syntheta 94.7 0.15 3.3E-06 45.0 7.8 84 3-123 8-95 (291)
154 PRK00066 ldh L-lactate dehydro 94.7 0.26 5.7E-06 44.0 9.5 34 3-36 6-39 (315)
155 KOG1502 Flavonol reductase/cin 94.6 0.11 2.3E-06 46.5 6.6 80 3-103 6-88 (327)
156 TIGR02371 ala_DH_arch alanine 94.5 0.061 1.3E-06 48.3 5.0 87 4-118 129-216 (325)
157 PRK12921 2-dehydropantoate 2-r 94.5 0.17 3.7E-06 44.6 7.7 30 4-34 1-30 (305)
158 TIGR01505 tartro_sem_red 2-hyd 94.5 0.036 7.7E-07 48.8 3.3 30 5-36 1-30 (291)
159 PRK06718 precorrin-2 dehydroge 94.4 2.1 4.5E-05 35.7 13.7 31 3-34 10-40 (202)
160 PRK08605 D-lactate dehydrogena 94.4 0.08 1.7E-06 47.7 5.5 30 4-33 147-176 (332)
161 PRK05479 ketol-acid reductoiso 94.4 0.092 2E-06 47.2 5.9 32 3-35 17-48 (330)
162 cd05291 HicDH_like L-2-hydroxy 94.3 0.16 3.5E-06 45.1 7.2 30 5-34 2-32 (306)
163 cd01065 NAD_bind_Shikimate_DH 94.3 0.14 3E-06 40.3 6.0 33 3-36 19-51 (155)
164 PLN03139 formate dehydrogenase 94.3 0.07 1.5E-06 49.0 4.8 31 4-36 200-230 (386)
165 cd05313 NAD_bind_2_Glu_DH NAD( 94.2 0.21 4.5E-06 43.2 7.5 34 3-37 38-71 (254)
166 PRK05086 malate dehydrogenase; 94.2 0.29 6.2E-06 43.7 8.7 33 4-36 1-35 (312)
167 PRK15469 ghrA bifunctional gly 94.2 0.071 1.5E-06 47.6 4.7 30 4-34 137-166 (312)
168 COG0111 SerA Phosphoglycerate 94.2 0.069 1.5E-06 47.9 4.6 30 4-34 143-172 (324)
169 PRK11199 tyrA bifunctional cho 94.2 0.089 1.9E-06 48.2 5.4 24 3-26 98-122 (374)
170 PLN02657 3,8-divinyl protochlo 94.1 0.17 3.6E-06 46.6 7.1 32 3-35 60-92 (390)
171 PRK06444 prephenate dehydrogen 94.1 0.14 3E-06 42.6 5.9 21 4-24 1-22 (197)
172 PRK08655 prephenate dehydrogen 94.0 0.17 3.8E-06 47.3 7.0 30 4-34 1-31 (437)
173 PRK13403 ketol-acid reductoiso 94.0 0.12 2.6E-06 46.2 5.6 32 4-36 17-48 (335)
174 PRK09599 6-phosphogluconate de 93.9 0.13 2.9E-06 45.5 5.9 30 5-36 2-31 (301)
175 cd01337 MDH_glyoxysomal_mitoch 93.8 0.36 7.8E-06 43.1 8.5 25 4-28 1-26 (310)
176 PLN00106 malate dehydrogenase 93.8 0.33 7.3E-06 43.5 8.2 34 3-36 18-52 (323)
177 PRK15182 Vi polysaccharide bio 93.8 0.15 3.2E-06 47.6 6.1 32 3-36 6-37 (425)
178 TIGR01470 cysG_Nterm siroheme 93.8 2.2 4.7E-05 35.7 12.6 85 3-118 9-95 (205)
179 PRK07531 bifunctional 3-hydrox 93.7 0.18 3.8E-06 48.0 6.7 31 4-36 5-35 (495)
180 PRK06545 prephenate dehydrogen 93.7 0.11 2.3E-06 47.3 5.1 21 5-25 2-22 (359)
181 PRK08268 3-hydroxy-acyl-CoA de 93.7 0.092 2E-06 50.1 4.7 30 4-34 8-37 (507)
182 TIGR01019 sucCoAalpha succinyl 93.7 0.25 5.5E-06 43.5 7.1 87 3-123 6-93 (286)
183 PF02826 2-Hacid_dh_C: D-isome 93.6 0.12 2.6E-06 42.1 4.7 33 3-36 36-68 (178)
184 cd01338 MDH_choloroplast_like 93.5 0.45 9.7E-06 42.7 8.5 24 3-26 2-26 (322)
185 PF02670 DXP_reductoisom: 1-de 93.4 0.18 4E-06 38.9 5.1 37 6-43 1-39 (129)
186 PRK11064 wecC UDP-N-acetyl-D-m 93.4 0.11 2.4E-06 48.3 4.5 33 1-34 1-33 (415)
187 PRK15059 tartronate semialdehy 93.3 0.13 2.9E-06 45.4 4.8 26 5-31 2-27 (292)
188 cd05211 NAD_bind_Glu_Leu_Phe_V 93.2 0.17 3.8E-06 42.7 5.2 36 2-38 22-57 (217)
189 TIGR00465 ilvC ketol-acid redu 93.2 0.26 5.7E-06 44.0 6.5 32 3-35 3-34 (314)
190 COG0240 GpsA Glycerol-3-phosph 93.2 0.28 6.1E-06 43.8 6.6 95 3-118 1-99 (329)
191 PRK15057 UDP-glucose 6-dehydro 93.0 0.19 4.2E-06 46.3 5.5 29 5-35 2-30 (388)
192 PLN00112 malate dehydrogenase 93.0 0.51 1.1E-05 44.2 8.3 23 3-25 100-123 (444)
193 PTZ00345 glycerol-3-phosphate 93.0 0.37 7.9E-06 44.0 7.2 24 3-26 11-34 (365)
194 PRK05808 3-hydroxybutyryl-CoA 93.0 0.14 3E-06 44.9 4.3 32 1-33 1-32 (282)
195 COG1893 ApbA Ketopantoate redu 92.9 0.37 8E-06 42.9 7.0 85 4-115 1-89 (307)
196 TIGR01772 MDH_euk_gproteo mala 92.9 0.64 1.4E-05 41.5 8.5 32 5-36 1-33 (312)
197 COG0677 WecC UDP-N-acetyl-D-ma 92.7 0.28 6E-06 44.9 5.9 30 4-34 10-39 (436)
198 PRK06719 precorrin-2 dehydroge 92.7 4.3 9.3E-05 32.4 13.3 30 3-33 13-42 (157)
199 cd00300 LDH_like L-lactate deh 92.6 0.56 1.2E-05 41.6 7.8 31 6-36 1-31 (300)
200 cd01483 E1_enzyme_family Super 92.5 0.15 3.3E-06 39.7 3.7 30 5-35 1-30 (143)
201 PRK12439 NAD(P)H-dependent gly 92.5 0.19 4.1E-06 45.4 4.7 24 3-26 7-30 (341)
202 PLN02166 dTDP-glucose 4,6-dehy 92.5 1.3 2.8E-05 41.5 10.3 31 3-34 120-151 (436)
203 TIGR01759 MalateDH-SF1 malate 92.4 0.53 1.2E-05 42.2 7.4 25 3-27 3-28 (323)
204 cd01487 E1_ThiF_like E1_ThiF_l 92.3 0.18 3.9E-06 41.0 3.9 30 5-35 1-30 (174)
205 cd00704 MDH Malate dehydrogena 92.3 0.69 1.5E-05 41.5 8.0 25 4-28 1-26 (323)
206 PF03721 UDPG_MGDP_dh_N: UDP-g 92.3 0.19 4.2E-06 41.3 4.1 31 4-35 1-31 (185)
207 TIGR02992 ectoine_eutC ectoine 92.3 0.25 5.3E-06 44.4 5.1 34 4-37 130-163 (326)
208 TIGR01757 Malate-DH_plant mala 92.2 0.51 1.1E-05 43.4 7.1 26 3-28 44-70 (387)
209 PF02558 ApbA: Ketopantoate re 92.1 0.58 1.3E-05 36.6 6.6 30 6-36 1-30 (151)
210 PRK14031 glutamate dehydrogena 92.0 0.65 1.4E-05 43.4 7.7 33 3-36 228-260 (444)
211 TIGR00243 Dxr 1-deoxy-D-xylulo 91.9 0.25 5.5E-06 45.1 4.7 107 4-118 2-118 (389)
212 PLN00203 glutamyl-tRNA reducta 91.9 0.24 5.2E-06 47.3 4.7 33 3-36 266-298 (519)
213 PRK01438 murD UDP-N-acetylmura 91.8 0.92 2E-05 42.8 8.6 90 3-123 16-106 (480)
214 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.8 0.13 2.9E-06 48.9 2.9 30 4-34 6-35 (503)
215 PRK05442 malate dehydrogenase; 91.6 0.35 7.6E-06 43.5 5.3 26 1-26 1-28 (326)
216 PLN02206 UDP-glucuronate decar 91.4 1.5 3.3E-05 41.1 9.6 31 3-34 119-150 (442)
217 KOG2733 Uncharacterized membra 91.4 0.22 4.8E-06 44.9 3.7 108 3-126 5-118 (423)
218 TIGR03736 PRTRC_ThiF PRTRC sys 91.3 0.56 1.2E-05 40.4 6.0 106 3-115 11-128 (244)
219 PRK14806 bifunctional cyclohex 91.3 0.41 9E-06 47.7 5.9 32 4-36 4-36 (735)
220 TIGR01327 PGDH D-3-phosphoglyc 91.1 0.25 5.5E-06 47.3 4.1 30 4-34 139-168 (525)
221 PRK05476 S-adenosyl-L-homocyst 91.0 0.58 1.3E-05 43.6 6.1 30 3-33 212-241 (425)
222 TIGR01035 hemA glutamyl-tRNA r 90.9 0.26 5.6E-06 45.9 3.9 32 4-36 181-212 (417)
223 COG0373 HemA Glutamyl-tRNA red 90.9 0.87 1.9E-05 42.2 7.1 92 4-126 179-276 (414)
224 cd01339 LDH-like_MDH L-lactate 90.8 0.57 1.2E-05 41.4 5.8 31 6-37 1-31 (300)
225 PRK00683 murD UDP-N-acetylmura 90.8 0.94 2E-05 42.0 7.4 84 1-119 1-85 (418)
226 PF00070 Pyr_redox: Pyridine n 90.7 0.62 1.3E-05 32.4 4.8 30 5-35 1-30 (80)
227 PRK08644 thiamine biosynthesis 90.6 0.43 9.4E-06 40.1 4.6 32 3-35 28-59 (212)
228 cd00401 AdoHcyase S-adenosyl-L 90.4 0.68 1.5E-05 43.0 6.0 31 4-36 203-233 (413)
229 PRK06487 glycerate dehydrogena 90.4 0.39 8.4E-06 43.0 4.3 29 4-33 149-177 (317)
230 TIGR00936 ahcY adenosylhomocys 90.3 0.77 1.7E-05 42.5 6.3 30 3-33 195-224 (406)
231 PRK12320 hypothetical protein; 90.2 2.3 5.1E-05 42.2 9.9 30 5-35 2-32 (699)
232 PRK11908 NAD-dependent epimera 90.2 0.44 9.6E-06 42.7 4.7 31 4-34 2-33 (347)
233 COG0771 MurD UDP-N-acetylmuram 90.2 1.8 3.8E-05 40.7 8.6 89 3-119 7-95 (448)
234 PRK14030 glutamate dehydrogena 90.2 0.94 2E-05 42.4 6.8 105 3-123 228-341 (445)
235 PRK08291 ectoine utilization p 90.1 0.48 1E-05 42.6 4.8 34 4-37 133-166 (330)
236 PRK14106 murD UDP-N-acetylmura 90.1 1.4 2.9E-05 41.2 8.0 89 3-118 5-93 (450)
237 PRK08410 2-hydroxyacid dehydro 90.1 0.42 9E-06 42.7 4.3 30 3-33 145-174 (311)
238 COG1252 Ndh NADH dehydrogenase 90.0 0.52 1.1E-05 43.6 4.9 39 1-39 1-40 (405)
239 PF02737 3HCDH_N: 3-hydroxyacy 90.0 0.49 1.1E-05 38.7 4.3 30 5-35 1-30 (180)
240 PRK06932 glycerate dehydrogena 90.0 0.44 9.6E-06 42.6 4.4 29 4-33 148-176 (314)
241 cd01075 NAD_bind_Leu_Phe_Val_D 90.0 0.59 1.3E-05 38.9 4.9 32 3-36 28-59 (200)
242 PRK06035 3-hydroxyacyl-CoA deh 89.9 0.5 1.1E-05 41.5 4.6 32 1-33 1-32 (291)
243 PLN02545 3-hydroxybutyryl-CoA 89.7 0.58 1.3E-05 41.2 4.9 33 1-34 1-34 (295)
244 PRK06407 ornithine cyclodeamin 89.6 0.66 1.4E-05 41.2 5.2 89 4-118 118-206 (301)
245 PRK00045 hemA glutamyl-tRNA re 89.6 0.43 9.4E-06 44.4 4.2 32 4-36 183-214 (423)
246 PLN02350 phosphogluconate dehy 89.6 0.49 1.1E-05 45.0 4.6 31 3-34 6-36 (493)
247 PRK08293 3-hydroxybutyryl-CoA 89.6 0.55 1.2E-05 41.2 4.6 32 1-33 1-32 (287)
248 COG5322 Predicted dehydrogenas 89.6 1.7 3.7E-05 37.9 7.3 24 4-27 168-192 (351)
249 PRK14620 NAD(P)H-dependent gly 89.4 0.81 1.8E-05 40.9 5.7 30 5-36 2-31 (326)
250 PRK08219 short chain dehydroge 89.2 0.57 1.2E-05 38.8 4.3 33 1-35 1-34 (227)
251 PF13241 NAD_binding_7: Putati 89.2 3.2 7E-05 30.4 7.9 33 3-36 7-39 (103)
252 PRK05690 molybdopterin biosynt 89.2 0.5 1.1E-05 40.6 4.0 24 3-26 32-55 (245)
253 PRK05708 2-dehydropantoate 2-r 89.1 2 4.3E-05 38.2 7.9 31 3-34 2-32 (305)
254 PLN02353 probable UDP-glucose 89.1 0.57 1.2E-05 44.3 4.6 33 3-35 1-34 (473)
255 PRK15409 bifunctional glyoxyla 89.1 0.53 1.2E-05 42.2 4.2 28 4-32 146-174 (323)
256 PRK07236 hypothetical protein; 89.1 0.54 1.2E-05 42.9 4.3 33 1-34 4-36 (386)
257 PRK06436 glycerate dehydrogena 88.7 0.61 1.3E-05 41.5 4.3 31 3-34 122-152 (303)
258 PRK07530 3-hydroxybutyryl-CoA 88.7 0.73 1.6E-05 40.5 4.8 31 2-33 3-33 (292)
259 PLN02928 oxidoreductase family 88.6 0.63 1.4E-05 42.2 4.3 30 4-34 160-189 (347)
260 COG0743 Dxr 1-deoxy-D-xylulose 88.5 0.73 1.6E-05 41.7 4.5 38 3-41 1-40 (385)
261 KOG0455 Homoserine dehydrogena 88.4 0.63 1.4E-05 40.0 3.9 104 1-118 1-113 (364)
262 PLN03209 translocon at the inn 88.4 2 4.4E-05 41.5 7.8 32 4-36 81-113 (576)
263 cd00650 LDH_MDH_like NAD-depen 88.4 2.1 4.5E-05 37.1 7.4 21 6-26 1-22 (263)
264 PRK11154 fadJ multifunctional 88.4 1.6 3.4E-05 43.6 7.3 30 4-33 310-339 (708)
265 TIGR02356 adenyl_thiF thiazole 88.4 0.45 9.7E-06 39.6 3.0 24 3-26 21-44 (202)
266 cd00757 ThiF_MoeB_HesA_family 88.3 0.37 8E-06 40.9 2.5 33 3-36 21-53 (228)
267 PRK12475 thiamine/molybdopteri 88.3 0.83 1.8E-05 41.3 4.9 33 3-36 24-56 (338)
268 PRK15181 Vi polysaccharide bio 88.2 0.71 1.5E-05 41.5 4.5 34 1-35 13-47 (348)
269 TIGR03376 glycerol3P_DH glycer 88.2 1.4 3.1E-05 39.9 6.4 21 5-25 1-21 (342)
270 cd01080 NAD_bind_m-THF_DH_Cycl 88.2 2 4.4E-05 34.7 6.7 28 3-31 44-72 (168)
271 PRK11730 fadB multifunctional 88.1 0.68 1.5E-05 46.1 4.6 30 4-34 314-343 (715)
272 PRK06199 ornithine cyclodeamin 88.1 1.1 2.3E-05 41.3 5.5 34 4-37 156-190 (379)
273 PLN02662 cinnamyl-alcohol dehy 88.1 1.5 3.2E-05 38.6 6.4 31 4-35 5-36 (322)
274 TIGR00518 alaDH alanine dehydr 88.0 1.4 3.1E-05 40.3 6.3 29 4-33 168-196 (370)
275 COG1063 Tdh Threonine dehydrog 88.0 1.2 2.6E-05 40.4 5.8 31 5-36 171-201 (350)
276 PRK12480 D-lactate dehydrogena 87.9 0.8 1.7E-05 41.2 4.5 30 4-34 147-176 (330)
277 COG4529 Uncharacterized protei 87.8 0.65 1.4E-05 43.5 3.9 35 3-37 1-36 (474)
278 PLN02858 fructose-bisphosphate 87.7 0.86 1.9E-05 48.7 5.3 30 3-33 324-353 (1378)
279 PRK14194 bifunctional 5,10-met 87.6 2.2 4.8E-05 37.8 7.1 30 4-34 160-190 (301)
280 KOG2711 Glycerol-3-phosphate d 87.6 2.8 6.1E-05 37.7 7.6 24 2-25 20-43 (372)
281 PRK08223 hypothetical protein; 87.5 0.9 2E-05 40.0 4.5 33 3-36 27-59 (287)
282 TIGR01202 bchC 2-desacetyl-2-h 87.5 2.4 5.1E-05 37.4 7.3 32 4-36 146-177 (308)
283 PRK15438 erythronate-4-phospha 87.5 0.74 1.6E-05 42.2 4.1 30 3-33 116-145 (378)
284 PRK13243 glyoxylate reductase; 87.5 0.81 1.8E-05 41.2 4.3 31 4-36 151-181 (333)
285 PRK06130 3-hydroxybutyryl-CoA 87.4 0.91 2E-05 40.2 4.6 33 1-34 1-34 (311)
286 TIGR02437 FadB fatty oxidation 87.4 0.79 1.7E-05 45.7 4.6 30 4-34 314-343 (714)
287 PRK04690 murD UDP-N-acetylmura 87.3 3.2 6.9E-05 39.2 8.4 29 3-32 8-36 (468)
288 TIGR02441 fa_ox_alpha_mit fatt 87.2 0.57 1.2E-05 46.8 3.5 29 4-33 336-364 (737)
289 TIGR02354 thiF_fam2 thiamine b 87.1 0.54 1.2E-05 39.2 2.8 33 3-36 21-53 (200)
290 PLN02858 fructose-bisphosphate 87.1 0.87 1.9E-05 48.7 4.9 32 3-36 4-35 (1378)
291 COG1052 LdhA Lactate dehydroge 87.1 0.83 1.8E-05 41.0 4.2 30 4-34 147-176 (324)
292 PF07991 IlvN: Acetohydroxy ac 87.1 0.85 1.9E-05 36.6 3.7 81 3-118 4-89 (165)
293 KOG2742 Predicted oxidoreducta 87.0 0.3 6.6E-06 43.6 1.3 92 1-123 1-92 (367)
294 PRK05865 hypothetical protein; 86.9 2.6 5.5E-05 42.9 7.8 30 5-35 2-32 (854)
295 PLN00125 Succinyl-CoA ligase [ 86.9 2.7 5.8E-05 37.4 7.1 86 4-123 13-99 (300)
296 PTZ00079 NADP-specific glutama 86.7 2.9 6.3E-05 39.2 7.6 104 3-123 237-350 (454)
297 PF01073 3Beta_HSD: 3-beta hyd 86.7 3.3 7.1E-05 36.3 7.7 29 8-36 2-31 (280)
298 PLN02427 UDP-apiose/xylose syn 86.7 1.1 2.3E-05 41.0 4.8 33 3-35 14-47 (386)
299 PRK11790 D-3-phosphoglycerate 86.4 0.98 2.1E-05 41.9 4.4 30 4-34 152-181 (409)
300 COG0569 TrkA K+ transport syst 86.4 0.97 2.1E-05 38.3 4.0 32 4-36 1-32 (225)
301 COG1086 Predicted nucleoside-d 86.3 2 4.2E-05 41.3 6.3 35 3-37 116-150 (588)
302 TIGR01771 L-LDH-NAD L-lactate 86.1 1.9 4E-05 38.3 5.8 29 8-36 1-29 (299)
303 PRK06141 ornithine cyclodeamin 86.1 0.96 2.1E-05 40.4 4.0 33 4-37 126-159 (314)
304 PRK00258 aroE shikimate 5-dehy 85.9 2.3 5E-05 37.2 6.3 32 4-36 124-155 (278)
305 PRK05562 precorrin-2 dehydroge 85.9 12 0.00026 31.8 10.3 31 3-34 25-55 (223)
306 PRK09496 trkA potassium transp 85.9 2.5 5.5E-05 39.3 6.9 31 4-35 1-31 (453)
307 PRK07340 ornithine cyclodeamin 85.8 0.99 2.2E-05 40.1 4.0 34 4-37 126-159 (304)
308 cd01486 Apg7 Apg7 is an E1-lik 85.8 0.75 1.6E-05 40.8 3.1 30 5-35 1-30 (307)
309 PLN02477 glutamate dehydrogena 85.7 1.3 2.8E-05 41.1 4.7 34 3-37 206-239 (410)
310 PLN02986 cinnamyl-alcohol dehy 85.6 2.5 5.5E-05 37.3 6.5 32 4-36 6-38 (322)
311 PRK06129 3-hydroxyacyl-CoA deh 85.6 1.2 2.5E-05 39.6 4.3 30 4-34 3-32 (308)
312 PRK00257 erythronate-4-phospha 85.6 1.1 2.3E-05 41.3 4.1 29 4-33 117-145 (381)
313 TIGR03855 NAD_NadX aspartate d 85.2 1.1 2.3E-05 38.2 3.7 38 83-123 29-66 (229)
314 cd05292 LDH_2 A subgroup of L- 85.1 1.3 2.8E-05 39.4 4.4 33 4-36 1-33 (308)
315 COG0334 GdhA Glutamate dehydro 84.9 5.6 0.00012 36.8 8.3 34 4-38 208-241 (411)
316 PRK06823 ornithine cyclodeamin 84.9 1.6 3.4E-05 39.1 4.8 87 4-118 129-216 (315)
317 PRK05732 2-octaprenyl-6-methox 84.9 1.3 2.8E-05 40.3 4.4 35 1-35 1-37 (395)
318 PRK09880 L-idonate 5-dehydroge 84.9 3.9 8.4E-05 36.6 7.4 29 4-33 171-200 (343)
319 PRK03369 murD UDP-N-acetylmura 84.7 4 8.8E-05 38.7 7.7 82 4-118 13-95 (488)
320 PRK12825 fabG 3-ketoacyl-(acyl 84.3 1.8 3.9E-05 36.1 4.7 34 2-36 5-39 (249)
321 PRK15116 sulfur acceptor prote 84.3 2.6 5.6E-05 36.8 5.7 24 3-26 30-53 (268)
322 cd01078 NAD_bind_H4MPT_DH NADP 84.3 1.3 2.9E-05 36.3 3.8 31 3-34 28-59 (194)
323 PRK05653 fabG 3-ketoacyl-(acyl 84.2 1.9 4.1E-05 36.0 4.8 31 3-34 5-36 (246)
324 TIGR02355 moeB molybdopterin s 84.2 1.4 3E-05 37.8 4.0 33 3-36 24-56 (240)
325 TIGR00715 precor6x_red precorr 84.2 1.5 3.3E-05 38.0 4.2 31 4-36 1-32 (256)
326 TIGR01692 HIBADH 3-hydroxyisob 83.9 1.2 2.7E-05 39.0 3.7 27 8-36 1-27 (288)
327 PLN02306 hydroxypyruvate reduc 83.8 1.6 3.4E-05 40.3 4.4 29 4-33 166-195 (386)
328 PRK05597 molybdopterin biosynt 83.8 1.4 3.1E-05 40.0 4.1 33 3-36 28-60 (355)
329 KOG3923 D-aspartate oxidase [A 83.2 1.6 3.4E-05 38.6 3.9 37 1-37 1-43 (342)
330 PRK13940 glutamyl-tRNA reducta 83.2 1.5 3.2E-05 40.8 4.0 33 4-37 182-214 (414)
331 PRK12549 shikimate 5-dehydroge 83.1 2.7 5.9E-05 37.0 5.5 33 4-37 128-160 (284)
332 PRK07688 thiamine/molybdopteri 83.0 2 4.4E-05 38.8 4.7 33 3-36 24-56 (339)
333 PRK04965 NADH:flavorubredoxin 82.7 1.8 3.8E-05 39.5 4.3 35 1-36 1-36 (377)
334 cd01484 E1-2_like Ubiquitin ac 82.6 1.8 3.9E-05 37.0 4.0 30 5-35 1-30 (234)
335 PF04321 RmlD_sub_bind: RmlD s 82.6 2.1 4.5E-05 37.6 4.6 31 4-35 1-32 (286)
336 TIGR01381 E1_like_apg7 E1-like 82.5 1.4 3E-05 43.1 3.6 32 3-35 338-369 (664)
337 PRK09310 aroDE bifunctional 3- 82.5 3.4 7.3E-05 39.2 6.2 30 3-33 332-361 (477)
338 PRK14188 bifunctional 5,10-met 82.4 5.2 0.00011 35.5 6.9 29 4-33 159-188 (296)
339 PLN02695 GDP-D-mannose-3',5'-e 82.2 2.2 4.9E-05 38.8 4.8 32 3-35 21-53 (370)
340 PRK09754 phenylpropionate diox 82.2 1.7 3.6E-05 39.9 4.0 36 1-36 1-37 (396)
341 PRK11259 solA N-methyltryptoph 82.2 1.9 4.1E-05 38.9 4.3 33 1-34 1-33 (376)
342 COG0644 FixC Dehydrogenases (f 82.0 1.9 4.2E-05 39.6 4.3 34 1-35 1-34 (396)
343 PRK07066 3-hydroxybutyryl-CoA 82.0 2.3 5E-05 38.1 4.7 30 3-33 7-36 (321)
344 PF02423 OCD_Mu_crystall: Orni 81.9 0.78 1.7E-05 41.0 1.6 87 4-118 129-218 (313)
345 COG2084 MmsB 3-hydroxyisobutyr 81.8 2.1 4.5E-05 37.7 4.2 30 4-34 1-30 (286)
346 PTZ00318 NADH dehydrogenase-li 81.7 2.5 5.5E-05 39.2 5.0 35 1-36 8-42 (424)
347 PRK09260 3-hydroxybutyryl-CoA 81.7 2.1 4.6E-05 37.5 4.3 29 4-33 2-30 (288)
348 cd05212 NAD_bind_m-THF_DH_Cycl 81.6 7.8 0.00017 30.3 7.0 28 92-123 70-97 (140)
349 PRK05600 thiamine biosynthesis 81.5 1.1 2.5E-05 40.9 2.6 32 3-35 41-72 (370)
350 PRK07589 ornithine cyclodeamin 81.5 3.2 7E-05 37.6 5.5 89 4-118 130-219 (346)
351 PLN02240 UDP-glucose 4-epimera 81.5 2.4 5.1E-05 37.9 4.6 31 3-34 5-36 (352)
352 PRK07877 hypothetical protein; 81.4 1.1 2.5E-05 44.5 2.7 28 92-119 195-223 (722)
353 PRK01710 murD UDP-N-acetylmura 81.3 9.3 0.0002 35.9 8.7 31 4-36 15-45 (458)
354 PLN00198 anthocyanidin reducta 81.2 2.5 5.4E-05 37.7 4.6 32 2-34 8-40 (338)
355 PLN00141 Tic62-NAD(P)-related 81.2 2.7 5.9E-05 35.8 4.7 32 3-35 17-49 (251)
356 KOG1399 Flavin-containing mono 81.1 1.7 3.6E-05 40.9 3.6 31 2-33 5-35 (448)
357 PRK00141 murD UDP-N-acetylmura 81.1 9.3 0.0002 36.1 8.6 32 3-36 15-46 (473)
358 cd01336 MDH_cytoplasmic_cytoso 81.1 2.5 5.3E-05 38.0 4.5 31 3-33 2-39 (325)
359 TIGR01087 murD UDP-N-acetylmur 80.9 7.8 0.00017 35.9 8.0 30 5-36 1-30 (433)
360 PRK14989 nitrite reductase sub 80.7 2.3 5E-05 43.3 4.7 36 1-36 1-39 (847)
361 PRK04663 murD UDP-N-acetylmura 80.6 10 0.00022 35.3 8.7 32 4-36 8-40 (438)
362 PRK09126 hypothetical protein; 80.5 2.2 4.8E-05 38.8 4.2 33 1-34 1-33 (392)
363 COG1250 FadB 3-hydroxyacyl-CoA 80.3 2.3 4.9E-05 37.9 3.9 32 1-33 1-32 (307)
364 PRK13512 coenzyme A disulfide 80.3 2.3 4.9E-05 39.7 4.2 33 4-36 2-35 (438)
365 PRK12409 D-amino acid dehydrog 80.2 2.5 5.3E-05 38.9 4.4 29 4-33 2-30 (410)
366 PRK13581 D-3-phosphoglycerate 80.2 2.4 5.1E-05 40.7 4.4 30 4-34 141-170 (526)
367 PF10100 DUF2338: Uncharacteri 79.7 4.1 8.8E-05 37.5 5.4 159 4-174 2-196 (429)
368 PRK00421 murC UDP-N-acetylmura 79.7 8.3 0.00018 36.2 7.8 29 3-32 7-36 (461)
369 PRK04308 murD UDP-N-acetylmura 79.6 11 0.00023 35.2 8.5 30 3-33 5-34 (445)
370 COG0579 Predicted dehydrogenas 79.6 2.8 6.1E-05 39.1 4.4 33 1-33 1-34 (429)
371 KOG1494 NAD-dependent malate d 79.5 2.1 4.5E-05 37.6 3.3 35 3-37 28-63 (345)
372 PRK14175 bifunctional 5,10-met 79.4 8.5 0.00018 34.0 7.2 30 4-34 159-189 (286)
373 TIGR03219 salicylate_mono sali 79.3 2.5 5.5E-05 38.9 4.1 30 4-33 1-30 (414)
374 COG1064 AdhP Zn-dependent alco 79.2 13 0.00027 33.7 8.3 33 4-37 168-200 (339)
375 KOG0029 Amine oxidase [Seconda 79.2 2.7 6E-05 40.1 4.4 34 2-36 14-47 (501)
376 PF02254 TrkA_N: TrkA-N domain 79.1 4 8.6E-05 30.1 4.5 30 6-36 1-30 (116)
377 COG3268 Uncharacterized conser 79.0 1.8 4E-05 38.8 2.9 98 3-126 6-106 (382)
378 PLN02586 probable cinnamyl alc 78.5 11 0.00025 33.9 8.1 32 4-36 185-216 (360)
379 PRK07326 short chain dehydroge 78.5 3.7 7.9E-05 34.2 4.6 30 4-34 7-37 (237)
380 PF01370 Epimerase: NAD depend 78.4 3.8 8.2E-05 33.9 4.6 31 6-37 1-32 (236)
381 PRK03659 glutathione-regulated 78.2 6.5 0.00014 38.4 6.7 31 4-35 401-431 (601)
382 PRK08125 bifunctional UDP-gluc 77.9 3.4 7.3E-05 40.8 4.8 33 3-35 315-348 (660)
383 PRK14851 hypothetical protein; 77.8 2.6 5.7E-05 41.7 3.9 24 3-26 43-66 (679)
384 PRK08163 salicylate hydroxylas 77.8 3.3 7.1E-05 37.7 4.4 30 3-33 4-33 (396)
385 KOG0069 Glyoxylate/hydroxypyru 77.7 1.9 4.2E-05 38.8 2.7 22 4-25 163-184 (336)
386 KOG2380 Prephenate dehydrogena 77.7 2.4 5.2E-05 38.2 3.2 25 3-27 52-76 (480)
387 COG0702 Predicted nucleoside-d 77.6 3.5 7.6E-05 35.1 4.3 32 4-36 1-33 (275)
388 PTZ00142 6-phosphogluconate de 77.4 3.1 6.7E-05 39.4 4.1 31 4-36 2-32 (470)
389 PRK02006 murD UDP-N-acetylmura 77.2 11 0.00023 35.9 7.8 29 3-32 7-35 (498)
390 COG0665 DadA Glycine/D-amino a 77.1 3.9 8.5E-05 36.9 4.7 32 2-34 3-34 (387)
391 COG1832 Predicted CoA-binding 77.1 18 0.0004 28.2 7.5 38 83-123 66-103 (140)
392 PRK08013 oxidoreductase; Provi 77.0 3.5 7.5E-05 37.8 4.3 33 1-34 1-33 (400)
393 PRK03806 murD UDP-N-acetylmura 76.9 13 0.00028 34.6 8.1 28 4-32 7-34 (438)
394 TIGR03025 EPS_sugtrans exopoly 76.7 11 0.00025 35.1 7.8 33 4-36 126-160 (445)
395 PRK15076 alpha-galactosidase; 76.7 2.1 4.6E-05 40.0 2.8 12 4-15 2-13 (431)
396 COG2423 Predicted ornithine cy 76.5 4 8.8E-05 36.7 4.4 88 4-118 131-219 (330)
397 cd08237 ribitol-5-phosphate_DH 76.4 11 0.00024 33.7 7.3 31 4-34 165-196 (341)
398 TIGR00507 aroE shikimate 5-deh 76.2 7.5 0.00016 33.7 6.0 30 4-34 118-147 (270)
399 PRK05335 tRNA (uracil-5-)-meth 76.2 3.6 7.7E-05 38.5 4.1 31 3-34 2-32 (436)
400 PRK06847 hypothetical protein; 76.2 3.7 8E-05 37.0 4.2 32 1-33 1-33 (375)
401 PRK08849 2-octaprenyl-3-methyl 76.0 3.8 8.3E-05 37.3 4.3 33 1-34 1-33 (384)
402 PTZ00187 succinyl-CoA syntheta 75.9 11 0.00024 33.7 7.0 88 4-123 30-118 (317)
403 KOG0409 Predicted dehydrogenas 75.9 3.8 8.2E-05 36.3 3.9 28 3-31 35-62 (327)
404 PRK14573 bifunctional D-alanyl 75.9 12 0.00025 38.0 8.1 34 1-36 1-36 (809)
405 PRK09897 hypothetical protein; 75.7 3.6 7.9E-05 39.6 4.2 31 3-33 1-32 (534)
406 PRK02472 murD UDP-N-acetylmura 75.6 14 0.0003 34.4 8.0 30 3-33 5-34 (447)
407 cd08230 glucose_DH Glucose deh 75.4 25 0.00055 31.4 9.4 31 4-35 174-204 (355)
408 PRK08063 enoyl-(acyl carrier p 75.2 5.5 0.00012 33.4 4.8 35 1-36 2-37 (250)
409 PRK01368 murD UDP-N-acetylmura 75.2 12 0.00025 35.3 7.4 30 3-35 6-35 (454)
410 TIGR03466 HpnA hopanoid-associ 75.1 4.3 9.3E-05 35.6 4.3 31 5-36 2-33 (328)
411 PRK09987 dTDP-4-dehydrorhamnos 75.0 3.9 8.4E-05 35.9 3.9 27 5-33 2-29 (299)
412 COG0169 AroE Shikimate 5-dehyd 74.9 9.2 0.0002 33.7 6.2 40 4-43 127-166 (283)
413 PF00208 ELFV_dehydrog: Glutam 74.9 6.9 0.00015 33.7 5.3 34 3-37 32-65 (244)
414 PRK06184 hypothetical protein; 74.6 4.1 9E-05 38.6 4.3 33 1-34 1-33 (502)
415 PRK11445 putative oxidoreducta 74.6 3.9 8.5E-05 36.8 3.9 30 3-34 1-30 (351)
416 PRK11728 hydroxyglutarate oxid 74.1 4.8 0.0001 36.8 4.4 32 2-33 1-33 (393)
417 PLN02778 3,5-epimerase/4-reduc 74.0 3.7 8.1E-05 36.1 3.6 28 3-31 9-37 (298)
418 TIGR03589 PseB UDP-N-acetylglu 73.9 5.3 0.00011 35.5 4.6 33 2-34 3-37 (324)
419 PRK10217 dTDP-glucose 4,6-dehy 73.9 4.5 9.8E-05 36.2 4.2 32 4-36 2-34 (355)
420 TIGR01181 dTDP_gluc_dehyt dTDP 73.9 3.9 8.4E-05 35.5 3.7 30 5-34 1-32 (317)
421 PF02882 THF_DHG_CYH_C: Tetrah 73.9 23 0.00051 28.3 7.8 22 4-25 37-59 (160)
422 PRK12826 3-ketoacyl-(acyl-carr 73.8 5.8 0.00013 33.2 4.6 32 3-35 6-38 (251)
423 PRK14982 acyl-ACP reductase; P 73.7 5.4 0.00012 36.1 4.5 32 3-34 155-188 (340)
424 COG1023 Gnd Predicted 6-phosph 73.6 3.8 8.2E-05 35.2 3.2 29 4-33 1-29 (300)
425 PRK14179 bifunctional 5,10-met 73.5 13 0.00029 32.7 6.8 22 4-25 159-181 (284)
426 PF07992 Pyr_redox_2: Pyridine 73.4 5 0.00011 32.4 4.0 28 5-33 1-28 (201)
427 PRK10675 UDP-galactose-4-epime 73.4 5 0.00011 35.6 4.3 30 4-34 1-31 (338)
428 PLN02172 flavin-containing mon 73.1 4.9 0.00011 37.9 4.3 30 3-33 10-39 (461)
429 PRK08762 molybdopterin biosynt 72.7 4 8.7E-05 37.4 3.6 32 3-35 135-166 (376)
430 PRK07411 hypothetical protein; 72.7 4 8.7E-05 37.6 3.5 33 3-36 38-70 (390)
431 PRK08850 2-octaprenyl-6-methox 72.5 5 0.00011 36.8 4.2 30 3-33 4-33 (405)
432 TIGR01809 Shik-DH-AROM shikima 72.3 8.1 0.00017 33.9 5.2 33 4-37 126-158 (282)
433 COG1648 CysG Siroheme synthase 72.2 47 0.001 27.8 9.6 33 3-36 12-44 (210)
434 COG0654 UbiH 2-polyprenyl-6-me 72.1 5.1 0.00011 36.6 4.1 31 3-34 2-32 (387)
435 PRK12827 short chain dehydroge 72.1 6.5 0.00014 32.8 4.5 31 3-34 6-37 (249)
436 PF00743 FMO-like: Flavin-bind 72.0 5.3 0.00011 38.5 4.3 31 3-34 1-31 (531)
437 PLN02260 probable rhamnose bio 72.0 5.3 0.00011 39.4 4.4 32 3-34 6-39 (668)
438 PLN02214 cinnamoyl-CoA reducta 71.9 6.9 0.00015 35.1 4.8 32 3-35 10-42 (342)
439 PRK11150 rfaD ADP-L-glycero-D- 71.8 5.2 0.00011 35.0 4.0 30 6-36 2-32 (308)
440 PRK09424 pntA NAD(P) transhydr 71.7 26 0.00056 33.6 8.8 33 3-37 165-197 (509)
441 PRK06180 short chain dehydroge 71.6 7.3 0.00016 33.5 4.8 32 3-35 4-36 (277)
442 PRK07023 short chain dehydroge 71.6 6.8 0.00015 32.8 4.5 30 4-34 2-32 (243)
443 PRK03803 murD UDP-N-acetylmura 71.5 23 0.00051 33.0 8.5 31 4-36 7-37 (448)
444 PTZ00075 Adenosylhomocysteinas 71.5 5.9 0.00013 37.5 4.3 30 3-33 254-283 (476)
445 PRK07208 hypothetical protein; 71.5 5.2 0.00011 37.6 4.1 32 1-33 2-33 (479)
446 TIGR01724 hmd_rel H2-forming N 71.5 10 0.00022 34.1 5.5 15 92-106 80-94 (341)
447 TIGR01214 rmlD dTDP-4-dehydror 71.4 5.2 0.00011 34.5 3.8 30 5-35 1-31 (287)
448 COG1086 Predicted nucleoside-d 71.4 8.5 0.00018 37.1 5.4 32 4-36 251-283 (588)
449 PLN02686 cinnamoyl-CoA reducta 71.4 6.9 0.00015 35.5 4.8 34 2-36 52-86 (367)
450 PRK10637 cysG siroheme synthas 71.3 92 0.002 29.3 12.6 30 3-33 12-41 (457)
451 PRK06914 short chain dehydroge 71.2 8.1 0.00018 33.1 5.0 35 1-36 1-36 (280)
452 PRK06617 2-octaprenyl-6-methox 71.2 5.8 0.00013 36.0 4.2 30 3-33 1-30 (374)
453 PRK14852 hypothetical protein; 71.2 5 0.00011 41.3 4.0 32 3-35 332-363 (989)
454 PLN02896 cinnamyl-alcohol dehy 71.0 6.9 0.00015 35.1 4.7 32 3-35 10-42 (353)
455 PRK07333 2-octaprenyl-6-methox 71.0 5.9 0.00013 36.1 4.3 32 3-34 1-33 (403)
456 PF01494 FAD_binding_3: FAD bi 70.7 6.2 0.00014 34.7 4.3 29 4-33 2-30 (356)
457 PRK06182 short chain dehydroge 70.7 8.4 0.00018 33.0 5.0 34 1-35 1-35 (273)
458 PLN02572 UDP-sulfoquinovose sy 70.7 6.3 0.00014 36.9 4.4 31 3-34 47-78 (442)
459 PF00899 ThiF: ThiF family; I 70.7 6.5 0.00014 30.1 3.8 33 3-36 2-34 (135)
460 KOG1430 C-3 sterol dehydrogena 70.6 7.6 0.00017 35.4 4.7 35 2-36 3-38 (361)
461 PRK07494 2-octaprenyl-6-methox 70.5 6.3 0.00014 35.8 4.3 31 3-34 7-37 (388)
462 PF01262 AlaDh_PNT_C: Alanine 70.2 8.4 0.00018 30.8 4.5 32 3-35 20-51 (168)
463 PRK05565 fabG 3-ketoacyl-(acyl 70.2 7.8 0.00017 32.3 4.6 34 2-36 4-38 (247)
464 COG0451 WcaG Nucleoside-diphos 70.2 6.6 0.00014 34.1 4.3 31 5-36 2-33 (314)
465 COG1004 Ugd Predicted UDP-gluc 70.0 5.9 0.00013 36.5 3.8 30 4-34 1-30 (414)
466 cd05297 GH4_alpha_glucosidase_ 69.8 5.1 0.00011 37.3 3.6 16 4-19 1-16 (423)
467 TIGR03022 WbaP_sugtrans Undeca 69.8 11 0.00023 35.5 5.7 34 3-36 125-160 (456)
468 PRK08773 2-octaprenyl-3-methyl 69.6 6.9 0.00015 35.6 4.4 30 3-33 6-35 (392)
469 COG1232 HemY Protoporphyrinoge 69.6 5.7 0.00012 37.3 3.8 32 4-35 1-33 (444)
470 TIGR02622 CDP_4_6_dhtase CDP-g 69.6 8 0.00017 34.6 4.7 32 2-34 3-35 (349)
471 COG1042 Acyl-CoA synthetase (N 69.6 18 0.00038 35.4 7.2 83 3-123 10-96 (598)
472 PLN02514 cinnamyl-alcohol dehy 69.3 20 0.00042 32.3 7.2 32 4-36 182-213 (357)
473 PRK05868 hypothetical protein; 69.2 6.4 0.00014 35.8 4.1 30 3-33 1-30 (372)
474 PTZ00188 adrenodoxin reductase 68.9 7.6 0.00016 37.0 4.5 29 3-31 39-67 (506)
475 PRK14189 bifunctional 5,10-met 68.8 18 0.0004 31.8 6.6 27 4-31 159-186 (285)
476 PRK12829 short chain dehydroge 68.5 8.7 0.00019 32.4 4.6 32 3-35 11-43 (264)
477 PRK10084 dTDP-glucose 4,6 dehy 68.4 7.1 0.00015 34.9 4.1 28 5-32 2-30 (352)
478 TIGR03366 HpnZ_proposed putati 68.3 16 0.00035 31.5 6.3 29 4-33 122-151 (280)
479 PRK05557 fabG 3-ketoacyl-(acyl 68.2 10 0.00023 31.4 4.9 33 3-36 5-38 (248)
480 PRK09564 coenzyme A disulfide 68.2 7.2 0.00016 36.2 4.3 32 5-36 2-34 (444)
481 PRK13394 3-hydroxybutyrate deh 68.1 9.5 0.00021 32.2 4.7 31 3-34 7-38 (262)
482 PLN02494 adenosylhomocysteinas 67.8 7.8 0.00017 36.6 4.3 29 4-33 255-283 (477)
483 PRK07231 fabG 3-ketoacyl-(acyl 67.8 10 0.00022 31.7 4.8 32 3-35 5-37 (251)
484 PRK05257 malate:quinone oxidor 67.7 7.2 0.00016 37.2 4.2 32 3-34 5-37 (494)
485 KOG0068 D-3-phosphoglycerate d 67.7 6.4 0.00014 35.5 3.5 28 4-32 147-174 (406)
486 PRK00711 D-amino acid dehydrog 67.5 7.9 0.00017 35.4 4.4 28 5-33 2-29 (416)
487 PRK02705 murD UDP-N-acetylmura 67.2 24 0.00052 33.0 7.6 30 5-36 2-31 (459)
488 PRK07878 molybdopterin biosynt 67.0 5.9 0.00013 36.5 3.4 33 3-36 42-74 (392)
489 PRK12429 3-hydroxybutyrate deh 66.7 11 0.00024 31.6 4.9 33 3-36 4-37 (258)
490 PRK06753 hypothetical protein; 66.3 8.2 0.00018 34.7 4.2 29 4-33 1-29 (373)
491 COG2907 Predicted NAD/FAD-bind 66.3 5.5 0.00012 36.2 2.8 31 3-33 8-38 (447)
492 TIGR03570 NeuD_NnaD sugar O-ac 66.3 10 0.00022 30.7 4.3 31 5-36 1-31 (201)
493 PRK07577 short chain dehydroge 66.2 12 0.00026 31.0 4.9 34 1-35 1-35 (234)
494 PRK12548 shikimate 5-dehydroge 66.1 17 0.00036 32.0 5.9 32 4-36 127-158 (289)
495 PRK14192 bifunctional 5,10-met 66.0 27 0.00058 30.7 7.1 27 4-31 160-187 (283)
496 PRK10538 malonic semialdehyde 66.0 11 0.00024 31.7 4.7 31 4-35 1-32 (248)
497 PLN02852 ferredoxin-NADP+ redu 66.0 9 0.00019 36.5 4.4 33 3-35 26-59 (491)
498 cd05191 NAD_bind_amino_acid_DH 66.0 17 0.00036 25.5 4.9 33 3-36 23-55 (86)
499 PRK06947 glucose-1-dehydrogena 65.9 11 0.00024 31.5 4.7 34 2-36 1-35 (248)
500 cd08281 liver_ADH_like1 Zinc-d 65.7 23 0.0005 32.0 7.0 30 4-34 193-223 (371)
No 1
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3e-60 Score=419.35 Aligned_cols=262 Identities=68% Similarity=1.073 Sum_probs=244.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+ +||||+|||+|||.++|++.+++++|+++|+++..+.+.++|||+|||+||+|+ +.+..+++ .|.++|+.|++++
T Consensus 1 m~-~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MV-VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFF 77 (337)
T ss_pred Cc-eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEe
Confidence 54 899999999999999999888889999999997778999999999999999998 77776655 6999999999999
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC-CCceEEeeeCcccccCCCCeEEcCCccchhh
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~-~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~ 159 (265)
..||+++||.+.++|+||+|||.+.++++++.++++|+|+|++|++.+ ++|++|||+|++.++...++||||+|+|+++
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 999999999989999999999999999999999999999898998743 4799999999999976567999999999999
Q ss_pred hhHHHHHHHhcCeeEEEEEEEeeccccccccCCCC--CccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEe
Q 024629 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 160 ~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~--~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~v 237 (265)
+|+|+||+++|||+++.+||+|++|..|..+|+++ +++++++|++++|++|+.+|.++++.+++|+++++++++++||
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRV 237 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 237 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEe
Confidence 99999999999999999999999999998889875 4688999999999999999999999999999999999999999
Q ss_pred eecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+++||+.+++++++++++.||++++|+
T Consensus 238 Pt~~~s~~dltv~l~k~vt~eev~~al~ 265 (337)
T PTZ00023 238 PVPDVSVVDLTCKLAKPAKYEEIVAAVK 265 (337)
T ss_pred cccCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999874
No 2
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=6.3e-60 Score=416.35 Aligned_cols=259 Identities=64% Similarity=1.033 Sum_probs=242.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
++||||+|||+|||.++|++.+++++|+++|+|. .+.++++|||+|||+||+|+ +.+..+++ .|.++|+.+.+++..
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence 3799999999999999999888889999999995 58899999999999999998 77766555 699999999998888
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC-CCceEEeeeCcccccCCCCeEEcCCccchhhhh
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~-~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~~l 161 (265)
+|++++|.+.++|+||||||.+.+++.++.++++|+|+|++|++.+ +.|++|||+|++.++. .++||||+|+|++++|
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lap 157 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAP 157 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHH
Confidence 9999999877999999999999999999999999999999998844 4789999999999974 6899999999999999
Q ss_pred HHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeeecc
Q 024629 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241 (265)
Q Consensus 162 ~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~~~ 241 (265)
+|+||+++|||+++.+||+|++|++|..+|++++++++++|++++|++|+.+|.+++..+++|+++|+++++++|||+++
T Consensus 158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~ 237 (331)
T PRK15425 158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 237 (331)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence 99999999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 242 VSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 242 G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
||+.+++++++++++.||++++|+
T Consensus 238 gs~~dltv~l~~~~t~eev~~al~ 261 (331)
T PRK15425 238 VSVVDLTVRLEKAATYEQIKAAVK 261 (331)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999884
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-60 Score=417.79 Aligned_cols=264 Identities=58% Similarity=0.946 Sum_probs=245.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC----CCeEEEEEeccCCChhhhhhheeeecccCcccccceeee-------CCceE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVK-------DDKTL 69 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~----p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~-------~~~~l 69 (265)
||++||||+|||+|||.++|++.++ +++|+++|+++..+.+.++|||+|||+||+|+ +.+..+ .++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCCEE
Confidence 7779999999999999999998764 68999999997778999999999999999998 777651 23479
Q ss_pred EECCEEEEEE-ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCC-CceEEeeeCcccccC-CC
Q 024629 70 LFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-EL 146 (265)
Q Consensus 70 ~~~g~~i~~~-~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~-~~~~v~gvn~~~i~~-~~ 146 (265)
.++|+.+.++ +..||++++|.+.++|+|+||||.+.+++.+..++++|+|+|+||++.++ .+++|||+|++.+++ ..
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 77899999999899999999999999999999999999999999999655 578999999999985 36
Q ss_pred CeEEcCCccchhhhhHHHHH-HHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhccc
Q 024629 147 NIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPA 225 (265)
Q Consensus 147 ~~V~~p~C~~ta~~l~L~pL-~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e 225 (265)
++|||.+|+|+|++|.++.| +++|||+++.+||+|+++++|+.+|++++++||.+|..+.|++|..+|.++++.+++|+
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~ 239 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS 239 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence 79999999999999999999 79999999999999999999999999877899999999999999999999999999999
Q ss_pred CCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 226 LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 226 ~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
++|+++..++|||+..|++.+++++++++++.|||+++|+
T Consensus 240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k 279 (361)
T PTZ00434 240 TKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIK 279 (361)
T ss_pred cCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
No 4
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.1e-59 Score=417.32 Aligned_cols=262 Identities=91% Similarity=1.380 Sum_probs=247.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCccccc-ceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~-~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
++||||+|+|++|+.++|.+.++|++++++|+|+..+.+.++|||+|||+||+|+ + .+..+.|+.|.++|+.+.++..
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 5899999999999999999998999999999998788999999999999999998 5 6666566679999999999988
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccCCCCeEEcCCccchhhhh
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 161 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~~l 161 (265)
.||++++|.+.++|+||+|||.+.+++.++.++++|+|+|++|+++++.|++|||+|++.++.+.++||||+|+|++++|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 88999999888999999999999999999999999999999999987889999999999997656899999999999999
Q ss_pred HHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeeecc
Q 024629 162 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 241 (265)
Q Consensus 162 ~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~~~ 241 (265)
+|+||+++|||+++.+||+|++|++|..+|++++++++++|++++|++|+.+|.+++..+++|+++++++++++|||+++
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~ 243 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVD 243 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcC
Confidence 99999999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 242 VSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 242 G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
||+.+++++++++++.||++++|+
T Consensus 244 gs~~dl~v~~~~~~t~eev~~~l~ 267 (338)
T PLN02358 244 VSVVDLTVRLEKAATYDEIKKAIK 267 (338)
T ss_pred eeEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999884
No 5
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=7.2e-59 Score=418.16 Aligned_cols=262 Identities=76% Similarity=1.163 Sum_probs=245.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
|+||||+|||+||+.++|.+..++++++++|+++..+.++++|||+|||+||+|+ +.+...+++.|.++|+.+.+++..
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecC
Confidence 4799999999999999999887778999999998778999999999999999998 777652334799999999998878
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccCCCCeEEcCCccchhhhhH
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 162 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~~l~ 162 (265)
|+++++|.+.++|+||+|||.+.+++.++.++++|+|++|||++++|+|++|||+|++.++...++||||+|+|++++++
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~ 243 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPL 243 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHH
Confidence 99999997779999999999999999999999999999999998778899999999999986568999999999999999
Q ss_pred HHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeeecce
Q 024629 163 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242 (265)
Q Consensus 163 L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~~~G 242 (265)
|+||+++|||+++.+||+|++|++|+.+|++++++++++|++++|++|+.+|.+++..+++|+++|+++++++|||+++|
T Consensus 244 lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~g 323 (421)
T PLN02272 244 AKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 323 (421)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCce
Confidence 99999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHhC
Q 024629 243 SVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 243 ~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+.+++++++++++.||++++|+
T Consensus 324 s~~dltv~lek~~s~eev~~alk 346 (421)
T PLN02272 324 SVVDLTCRLEKSASYEDVKAAIK 346 (421)
T ss_pred EEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999884
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-58 Score=408.79 Aligned_cols=259 Identities=49% Similarity=0.819 Sum_probs=240.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~--p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+||||+|||+|||.++|++.++ +++|+++|++.. +.+.++|||+|||+||+|+ +.+..+++ .|.++|+.+.+++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~-~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~ 77 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTS-DPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS 77 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCC-CHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence 47999999999999999998766 589999999964 7899999999999999998 77765544 7999999999988
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC--CCceEEeeeCcccccC-CCCeEEcCCccch
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKP-ELNIVSNASCTTN 157 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~--~~~~~v~gvn~~~i~~-~~~~V~~p~C~~t 157 (265)
..||+++||.+.++|+||+|||.+.+++.++.++++|+|+|++|++.. |.|++|||+|++.++. ..++||||+|+++
T Consensus 78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn 157 (337)
T PRK07403 78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN 157 (337)
T ss_pred cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence 789999999878999999999999999999999999999999998843 4699999999999974 3579999999999
Q ss_pred hhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEe
Q 024629 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 158 a~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~v 237 (265)
+++|+|+||+++|||+++.+||+|++|++|+.+|++ +++++++|.+++|++|+.+|.++++.+++|+++|+++.+++||
T Consensus 158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~-~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV 236 (337)
T PRK07403 158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDAS-HRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV 236 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEeeecCCccccccc-ccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence 999999999999999999999999999999999987 5799999999999999999999999999999999999999999
Q ss_pred eecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+..||+.+++++++++++.|||+++|+
T Consensus 237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~ 264 (337)
T PRK07403 237 PTPNVSVVDLVVQVEKRTITEQVNEVLK 264 (337)
T ss_pred ccCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999884
No 7
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.7e-58 Score=411.69 Aligned_cols=260 Identities=50% Similarity=0.811 Sum_probs=242.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~--p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
++||||+|||++|+.++|+|.++ |.+++++|++.. +.+.++|||+|||+||+|+ +.+..+.|+.|.++|+.+.+++
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~-~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCC-CHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEE
Confidence 37999999999999999999876 789999999965 7899999999999999998 7776655667999999999998
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC-CCceEEeeeCcccccCCCCeEEcCCccchhh
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~-~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~ 159 (265)
..||++++|.+.++|+||+|||.+.+++.++.++++|+|+|++|++.+ ++|++|||+|++.++.+.++||||+|+|+++
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~L 217 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCL 217 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHH
Confidence 889999999888999999999999999999999999999999999843 4799999999999976568999999999999
Q ss_pred hhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeee
Q 024629 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~ 239 (265)
+|+++||+++|||+++.|||+|++|++|+.+|++ +.+++++|++++|++|+.+|.+++..+++|+++|+++++++|||+
T Consensus 218 Ap~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~-~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv 296 (395)
T PLN03096 218 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 296 (395)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEccccccccccCC-CCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccc
Confidence 9999999999999999999999999999999986 568899999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
++||+.+++++++++++.|+++++|+
T Consensus 297 ~~gs~~dltv~~~~~~t~eev~~al~ 322 (395)
T PLN03096 297 PNVSVVDLVVQVEKKTFAEEVNAAFR 322 (395)
T ss_pred cceEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999884
No 8
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=1.4e-57 Score=410.11 Aligned_cols=260 Identities=52% Similarity=0.852 Sum_probs=240.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~--p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
++||||+|||+|||.++|.+.++ +++|+++|++. .+.+.++|||+|||+||+|+ +.+....++.|.++|+.+.+++
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEEE
Confidence 48999999999999999997755 78999999996 48899999999999999998 7775423447999999999988
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC--CCceEEeeeCcccccCC-CCeEEcCCccch
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTN 157 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~--~~~~~v~gvn~~~i~~~-~~~V~~p~C~~t 157 (265)
..||.+++|.+.++|+||+|||.+.+++.++.++++|+|+|++|++.. ++|++|||+|++.++.. .++||||+|+++
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTN 232 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTN 232 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHH
Confidence 678999999888999999999999999999999999999999998843 47899999999999754 579999999999
Q ss_pred hhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEe
Q 024629 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 158 a~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~v 237 (265)
+++|+++||+++|||+++.+||+|++|++|+.+|++ ++++|.+|..+.|++|..+|.++++.+++|+++|++++.++||
T Consensus 233 cLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~-h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RV 311 (442)
T PLN02237 233 CLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311 (442)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCC-CcccccccccccccccCCcchhhhhceecccCCCceeeEEEec
Confidence 999999999999999999999999999999999986 6899999999999999999999999999999999999999999
Q ss_pred eecceEEEEEEEEeCC-CCCHHHHHHHhC
Q 024629 238 PTVDVSVVDLTVRLEK-DASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~~~l~~-~~~~~~v~~~~~ 265 (265)
|+..|++.++++++++ +++.|||+++|+
T Consensus 312 Pt~nvS~vDLt~~l~k~~~t~eein~~~k 340 (442)
T PLN02237 312 PTPNVSVVDLVVNVEKKGITAEDVNAAFR 340 (442)
T ss_pred ccCCceEEEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999998 899999999885
No 9
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.1e-57 Score=400.23 Aligned_cols=258 Identities=40% Similarity=0.740 Sum_probs=239.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
++||||+|+|+||+.++|.+.+++++++++++++..+.++++|||+|||+||+|+ +.+.. .|+.|.++|+.+.+++..
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~-~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTA-EGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEE-cCCEEEECCEEEEEEecC
Confidence 4899999999999999999999999999999997778999999999999999998 77654 445799999999998878
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC--CCceEEeeeCcccccC-CCCeEEcCCccchhh
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKP-ELNIVSNASCTTNCL 159 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~--~~~~~v~gvn~~~i~~-~~~~V~~p~C~~ta~ 159 (265)
++++++|. ++|+||+|||.+.++++++.++++|+|+|++|++.. ++|++|||+|++.++. ..++||||+|+|+++
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 99999995 899999999999999999999999999999998843 4699999999999985 257999999999999
Q ss_pred hhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeee
Q 024629 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~ 239 (265)
+++|+||+++|||+++.+||+|++|.+|..+|++ +.+++++|++++|++|+.+|.+++..+++|+++|+++++++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~-~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAP-HKDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCC-CcccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 9999999999999999999999999999999986 467899999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
++||+.+++++++++++.||++++|+
T Consensus 237 ~~gs~~dl~v~~~~~~s~eev~~~l~ 262 (334)
T PRK08955 237 ANASLTDCVFEVERDTTVEEVNALLK 262 (334)
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999884
No 10
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5e-57 Score=398.71 Aligned_cols=260 Identities=49% Similarity=0.843 Sum_probs=240.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+ +||||+|||+|||.++|++.+++++|+++|++.. +.+.++|||+|||+||+|+ +.+..+++ .|.++|+.+.+++
T Consensus 1 m~-~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~-~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~ 76 (343)
T PRK07729 1 MK-TKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLN 76 (343)
T ss_pred Cc-eEEEEECcChHHHHHHHHHhhcCCcEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEE
Confidence 54 8999999999999999998878899999999864 8899999999999999998 77766544 7999999999998
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCC-CceEEeeeCcccccC-CCCeEEcCCccchh
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNC 158 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~-~~~~v~gvn~~~i~~-~~~~V~~p~C~~ta 158 (265)
..||+++||.+.++|+||+|||.+.+++.++.++++|+|+|++|++..+ .+.+|||+|++.++. ..++||||+|+|++
T Consensus 77 ~~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 77 NRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred cCChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHH
Confidence 8899999998889999999999999999999999999999999988443 345699999999975 35799999999999
Q ss_pred hhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEee
Q 024629 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238 (265)
Q Consensus 159 ~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP 238 (265)
++|+|+||+++|||+++.+||+|++|++|+.+|++ +++++.+|..+.|++|..+++++.+.+++|+++|+++.+++|||
T Consensus 157 Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~-~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVP 235 (343)
T PRK07729 157 LAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNP-HKDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVP 235 (343)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEecccCcccccccc-hhhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEee
Confidence 99999999999999999999999999999999987 57889999999999999999999999999999999999999999
Q ss_pred ecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 239 ~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+++||+.+++++++++++.|+++++|+
T Consensus 236 t~~~s~~dltv~l~k~~t~eev~~~l~ 262 (343)
T PRK07729 236 TPNVSLVDLVVDVKRDVTVEEINEAFK 262 (343)
T ss_pred ecCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999999884
No 11
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=6.6e-57 Score=397.88 Aligned_cols=258 Identities=60% Similarity=0.972 Sum_probs=238.8
Q ss_pred EEEEEccChhHHHHHHHHHcC--CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCE-EEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGV 81 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~--p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~-~i~~~~~ 81 (265)
||||+|||+|||.++|++.++ +++++++|++. .+.++++|||+|||+||+|+ +.+..++++.|.++|+ .+.+++.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence 799999999999999998877 57999999997 58999999999999999998 7776554325899999 9999887
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCC-CceEEeeeCcccccCCCCeEEcCCccchhhh
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~-~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~~ 160 (265)
.++++++|.+.++|+||+|||.+.+++.++.++++|+|+|++|++..+ +|++|||+|++.++.+.++||||+|+|++++
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La 158 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA 158 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence 899999997779999999999999999999999999999999988555 7999999999999865679999999999999
Q ss_pred hHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeeec
Q 024629 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240 (265)
Q Consensus 161 l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~~ 240 (265)
++|+||+++|||+++.+||+|++|++|..+|+++ .+++++|++++|++|+.+|+++++.+++|+++++++.+++|||++
T Consensus 159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~ 237 (327)
T TIGR01534 159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP 237 (327)
T ss_pred HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence 9999999999999999999999999999999864 578999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 241 DVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 241 ~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+||+.+++++++++++.||++++|+
T Consensus 238 ~gs~~dl~v~~~~~~t~eev~~al~ 262 (327)
T TIGR01534 238 NVSLVDLVLNLEKDTTKEEVNAALK 262 (327)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999884
No 12
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-56 Score=393.60 Aligned_cols=259 Identities=36% Similarity=0.696 Sum_probs=238.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcC---CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~---p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
|+||||+|||++|+.++|+|.++ +++++++|++.. +.+.++|||+|||+||+|+ +.+..+ ++.|.++|+.+.++
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~-~~~~~ayll~ydS~hg~~~-~~v~~~-~~~l~v~g~~i~v~ 77 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELA-DAEGMAHLLKYDTSHGRFA-WDVRQE-RDQLFVGDDAIRLL 77 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCC-CHHHHHHHhhhccCCCCCC-CcEEec-CCEEEECCEEEEEE
Confidence 47999999999999999999874 579999999964 8899999999999999998 776644 44799999999998
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC-C-CceEEeeeCcccccCCCCeEEcCCccch
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTN 157 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~-~-~~~~v~gvn~~~i~~~~~~V~~p~C~~t 157 (265)
+..+|++++|...++|+||+|||.+.++++++.++++|+|+|++|++.. + .+++|||+|++.+++..++||||+|+|+
T Consensus 78 ~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn 157 (336)
T PRK13535 78 HERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTN 157 (336)
T ss_pred EcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHH
Confidence 8889999999888999999999999999999999999999899998843 3 3489999999999865679999999999
Q ss_pred hhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEe
Q 024629 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 158 a~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~v 237 (265)
+++|+|+||+++|||+++.+||+|++|..|+.+|++ +++++.+|.+++|++|+.++..++..+++|+++++++.+++||
T Consensus 158 ~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~-~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRV 236 (336)
T PRK13535 158 CIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAY-HPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRV 236 (336)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhch-hhccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEe
Confidence 999999999999999999999999999889999987 5789999999999999988899999999999999999999999
Q ss_pred eecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+++||+.+++++++++++.|+++++|+
T Consensus 237 Pv~~gs~~dl~v~~~~~~t~eei~~~l~ 264 (336)
T PRK13535 237 PTINVTAIDLSVTVKKPVKVNEVNQLLQ 264 (336)
T ss_pred CccCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999874
No 13
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-56 Score=383.74 Aligned_cols=259 Identities=62% Similarity=0.960 Sum_probs=242.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||||+|||+|||.++|++.+++ ++|+++|++. .+++++|||++||++||+|. +.+..+++ .+.++|+.|+++..
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence 479999999999999999999998 7999999997 48999999999999999999 76654443 68899999999988
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhC-CCcEEEEcCCCCC-CceEEeeeCcccccCCCCeEEcCCccchhh
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~-g~~~vviS~~~~~-~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~ 159 (265)
.+|+.++|.+.++|+|+||||.+.+++..+.++++ |+|+|++|++.++ ++++|||+|++.++.+.++|||.||+|||+
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL 157 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL 157 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence 89999999999999999999999999999999987 6999999999766 899999999999986678999999999999
Q ss_pred hhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeee
Q 024629 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~ 239 (265)
+|.+++|.++|||+++.+|++|++++.|..+|+| |+++|.+|.++.|++|..+++++++.+++||++|++..+++|||+
T Consensus 158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgp-h~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt 236 (335)
T COG0057 158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGP-HKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236 (335)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCc-ccchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence 9999999999999999999999999999999997 457999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
..+|+.+++++++++++.|||+++|+
T Consensus 237 ~~vs~~dl~v~l~k~~t~eeIn~alk 262 (335)
T COG0057 237 PNVSVVDLTVELEKEVTVEEINAALK 262 (335)
T ss_pred CCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999885
No 14
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-55 Score=387.00 Aligned_cols=262 Identities=30% Similarity=0.552 Sum_probs=237.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECC-EEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVF 79 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g-~~i~~~ 79 (265)
|+ +||||+|||+|||.++|++.+++++|+++|+++..+.+.++|||+|||+||+|..+.+..+++ .|.++| +.+.++
T Consensus 1 m~-~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~ 78 (342)
T PTZ00353 1 LP-ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVS 78 (342)
T ss_pred CC-eEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEE
Confidence 44 799999999999999999888889999999997678899999999999999995136655544 699998 899999
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccCCCCeEEcCCccchhh
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~ 159 (265)
+..++++++|.+.++|+||+|||.+.+.+.+..++++|+|++++|+++++.|++|||+|++.++++.++||||+|+|+++
T Consensus 79 ~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~L 158 (342)
T PTZ00353 79 AKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVAL 158 (342)
T ss_pred ecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHH
Confidence 98999999998789999999999999889999999999999999999878899999999999986567999999999999
Q ss_pred hhHHHHHHHhcCeeEEEEEEEeeccccccccCCCC--CccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEe
Q 024629 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 237 (265)
Q Consensus 160 ~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~--~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~v 237 (265)
+|+++||+++|||+++.+||+|++. .+...|.++ +++++.+|..+.|++|..++..+++.+++|+++|+++.+++||
T Consensus 159 apvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRV 237 (342)
T PTZ00353 159 APVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQV 237 (342)
T ss_pred HHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEc
Confidence 9999999999999999999999885 344456544 3788999988889999999999999999999999999999999
Q ss_pred eecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 238 PTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 238 P~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+++||+.+++++++++++.||++++|+
T Consensus 238 Pt~~vs~vdltv~~~k~~t~eein~~l~ 265 (342)
T PTZ00353 238 PVKKGCAIDMLVRTKQPVSKEVVDSALA 265 (342)
T ss_pred cccCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999884
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-54 Score=389.15 Aligned_cols=261 Identities=39% Similarity=0.620 Sum_probs=241.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcC----CCeEEEEEecc---CCChhhhhhheeeecccCcccccceeeeC-CceEEECCE
Q 024629 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAVNDP---FITTDYMTYMFKYDSVHGQWKHHELKVKD-DKTLLFGEK 74 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~----p~~el~~i~~~---~~~~~~~a~l~~~~~~~~~~~~~~v~~~~-~~~l~~~g~ 74 (265)
..||||+|||+|||.++|++.++ +++++++|+++ ..+.+.++|||+|||+||+|. +.+..+. ++.|.++|+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECCE
Confidence 46999999999999999998866 57999999742 346788999999999999998 7776642 347999999
Q ss_pred EEEEEecCCCCCCCccccCcc--EEEEecCCcccHHHHHHHHh-CCCcEEEEcCCCCC-CceEEeeeCcccccCCCCeEE
Q 024629 75 PVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVS 150 (265)
Q Consensus 75 ~i~~~~~~d~~~~~~~~~~~D--vV~~atp~~~~~~~~~~~~~-~g~~~vviS~~~~~-~~~~v~gvn~~~i~~~~~~V~ 150 (265)
.|.+++..||+++||.+.++| +|+|||+.+...+.+..+++ +|+|+|++|++.++ +|++|||+|++.++.+.++||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999989999 99999999999999999999 89999999999654 799999999999976567999
Q ss_pred cCCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCce
Q 024629 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKL 230 (265)
Q Consensus 151 ~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v 230 (265)
||+|+|+|++|+++||+++|||+++.+||+|++|+.|..+|++ ++++++||++++|++|..+|.++++.+++|+++|++
T Consensus 286 nASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~-hkd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNY-HKGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred CCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhh-hhcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 9999999999999999999999999999999999999999986 568899999999999999999999999999999999
Q ss_pred eEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 231 ~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+++++|||++.|++++++++++++++.|+++++|+
T Consensus 365 tg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk 399 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNLEKETSREELNEYLR 399 (477)
T ss_pred EEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.2e-53 Score=378.06 Aligned_cols=257 Identities=37% Similarity=0.698 Sum_probs=235.0
Q ss_pred EEEEEccChhHHHHHHHHHcCC---CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p---~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
||||+|+|++|+.++|+|.+++ ++++++|++.. +.+.++||++|||+||+|+ +.+..+ ++.|.++|+.+.+++.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~-~~~~~ayll~yDS~hg~~~-~~v~~~-~~~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA-DQASMAHLLRYDTSHGRFP-GEVKVD-GDCLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC-CHHHHHHHHhhCccCCCCC-CcEEEe-CCEEEECCeEEEEEEc
Confidence 6999999999999999998764 69999999864 7889999999999999998 776544 4479999999999888
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCC-C-CceEEeeeCcccccCCCCeEEcCCccchhh
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNCL 159 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~-~-~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~ 159 (265)
.+|++++|...++|+||+|||.+.+++.++.++++|+++|++|++.. + ..++|||+|++.++...++||||+|+|+++
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l 157 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI 157 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence 89999999888999999999999999999999999999888888832 2 348999999999986567999999999999
Q ss_pred hhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeee
Q 024629 160 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 239 (265)
Q Consensus 160 ~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~ 239 (265)
+++|+||+++|||+++.|||+|++|+.|..+|++ +++++.+|....|++|+.++..++..+++|+++|+++++++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~-~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv 236 (325)
T TIGR01532 158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAY-HHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT 236 (325)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccc-hhhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence 9999999999999999999999999999999997 568888887777999998899999999999999999999999999
Q ss_pred cceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 240 VDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 240 ~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
++||+.+++++++++++.|+++++|+
T Consensus 237 ~~~s~~dl~v~~~~~~~~eev~~~l~ 262 (325)
T TIGR01532 237 VNVTALDLSVTTKRDVKANEVNRVLR 262 (325)
T ss_pred cCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999884
No 17
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-41 Score=301.47 Aligned_cols=232 Identities=23% Similarity=0.262 Sum_probs=182.4
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~--~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
+++||||+|+ ||+|++++|+|.+ ||.++|..+++....++ .+.+.++++.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~--------------------------~~~~~~~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE--------------------------TLRFGGKSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc--------------------------eEEECCcceEE
Confidence 4799999999 9999999999999 89999999987653332 23333333444
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCc---ccccCCCCeEEcC
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNE---NEYKPELNIVSNA 152 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~---~~i~~~~~~V~~p 152 (265)
. ++++++| .++|+||+|+|++.++++++.+.++|++.++.|++ +++.|..+||+|+ +.++ ++++|+||
T Consensus 57 ~---~~~~~~~--~~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~~iIAnP 130 (336)
T PRK08040 57 Q---DAAEFDW--SQAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NRNIIAVA 130 (336)
T ss_pred E---eCchhhc--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc-cCCEEECC
Confidence 2 3455555 47999999999999999999999999965556777 4568999999999 5555 47899999
Q ss_pred CccchhhhhHHHHHHHhcCeeEEEEEEEeecccccc-ccCC-----------CCCccccCccccccccccccC-------
Q 024629 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDG-----------PSSKDWRGGRAASFNIIPSST------- 213 (265)
Q Consensus 153 ~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~-~~d~-----------~~~~~~~~g~~~~~n~~p~~~------- 213 (265)
||++|+++++|+||+++++|+++.+++++++||+++ .++. .+.....+..++++|++|++.
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~ 210 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR 210 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence 999999999999999999999999999999999843 2221 111224567779999999942
Q ss_pred --Ch-hhhHhhhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 214 --GA-AKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 214 --~~-~~~~~~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
.+ .+|..|++..-...++||||||||+|||+.++|++++++++.++++++|+
T Consensus 211 ~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~ 265 (336)
T PRK08040 211 EERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALE 265 (336)
T ss_pred HhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHh
Confidence 22 34444554211224899999999999999999999999999999999984
No 18
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=8.8e-41 Score=297.94 Aligned_cols=234 Identities=16% Similarity=0.203 Sum_probs=185.4
Q ss_pred CC-ccEEEEEcc-ChhHHHHHHHHH--cCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEE
Q 024629 1 MG-KVKIGINGF-GRIGRLVARVIL--QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (265)
Q Consensus 1 m~-~~~V~IiG~-G~~G~~l~r~L~--~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i 76 (265)
|+ |+||+|+|+ |++|+|++|+|. +||.+++..+.+....++. +.+.+..+
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~--------------------------l~~~~~~l 54 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHS--------------------------VPFAGKNL 54 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCe--------------------------eccCCcce
Confidence 54 689999999 999999999999 7899999999887533322 11222223
Q ss_pred EEEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC--CCCCceEEeeeCcccccC--CCCeEEcC
Q 024629 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP--SKDAPMFVVGVNENEYKP--ELNIVSNA 152 (265)
Q Consensus 77 ~~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~--~~~~~~~v~gvn~~~i~~--~~~~V~~p 152 (265)
.+. +.+..+| .++|+||+|+|++.+.++++.+.++|+++++.|++ -++.|..+|++|+++++. ++++|+||
T Consensus 55 ~~~---~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnP 129 (336)
T PRK05671 55 RVR---EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSP 129 (336)
T ss_pred EEe---eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECC
Confidence 332 2222223 57999999999999999999999999976666777 246899999999998873 26899999
Q ss_pred CccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccc-cCC-----------CCCccccCccccccccccccC-----Ch
Q 024629 153 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDG-----------PSSKDWRGGRAASFNIIPSST-----GA 215 (265)
Q Consensus 153 ~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~-~d~-----------~~~~~~~~g~~~~~n~~p~~~-----~~ 215 (265)
||++|+++++|+||++.++++++.+++++++||+++. ++. .......++++++||++|+.. +|
T Consensus 130 gC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh 209 (336)
T PRK05671 130 SASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGH 209 (336)
T ss_pred CcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCc
Confidence 9999999999999998888999999999999998432 222 111234577889999999884 66
Q ss_pred hhhHhhhcccCC-------CceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 216 AKAVGKVLPALN-------GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 216 ~~~~~~~~~e~~-------~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
.+|+.||.||+. .+++|||||||++|||+.++|++++++++.++++++|+
T Consensus 210 ~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~ 266 (336)
T PRK05671 210 TALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALE 266 (336)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHh
Confidence 666667766642 24899999999999999999999999999999999985
No 19
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1e-40 Score=298.99 Aligned_cols=230 Identities=21% Similarity=0.318 Sum_probs=183.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~--~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
++||+|+|+ ||+|++++|+|.+ ||.++++++++....++ .+.+++..+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~--------------------------~l~~~g~~i~v~ 54 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK--------------------------ELSFKGKELKVE 54 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC--------------------------eeeeCCceeEEe
Confidence 369999999 9999999999998 79999999987643332 122233333332
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCcccccCC--CCeEEcCCc
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKPE--LNIVSNASC 154 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~~~--~~~V~~p~C 154 (265)
|++..+| .++|+||+|+|++.+++++++++++|++.+..|++ +++.|..+||+|++.|+.. .++|+||||
T Consensus 55 ---d~~~~~~--~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C 129 (334)
T PRK14874 55 ---DLTTFDF--SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNC 129 (334)
T ss_pred ---eCCHHHH--cCCCEEEECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccH
Confidence 3333345 47999999999999999999999999843334665 3357899999999999752 379999999
Q ss_pred cchhhhhHHHHHHHhcCeeEEEEEEEeeccccc------------cccCCC--CCccccCcccccccccccc-----CCh
Q 024629 155 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ------------KTVDGP--SSKDWRGGRAASFNIIPSS-----TGA 215 (265)
Q Consensus 155 ~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~------------~~~d~~--~~~~~~~g~~~~~n~~p~~-----~~~ 215 (265)
|+|+++|+|+||+++++|+++.++++|++||.+ ..+|.+ ++.+.+++|+++||++|++ ++|
T Consensus 130 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh 209 (334)
T PRK14874 130 STIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGY 209 (334)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCC
Confidence 999999999999999999999999999999853 233422 2346678999999999998 667
Q ss_pred hhhH-------hhhc--ccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 216 AKAV-------GKVL--PALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 216 ~~~~-------~~~~--~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
.+|+ .+++ |++ +++|+|+|||++|||+.++|++++++++.+|++++|+
T Consensus 210 ~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~ 266 (334)
T PRK14874 210 TKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILA 266 (334)
T ss_pred cHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 7763 3444 544 4999999999999999999999999999999999984
No 20
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-40 Score=296.33 Aligned_cols=232 Identities=17% Similarity=0.281 Sum_probs=181.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~e---l~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
.+||||+|+ |++|++++|+|.+||+|+ +..+.+....+ +.+.+.++++.+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saG--------------------------k~~~~~~~~l~v 58 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAG--------------------------KTVQFKGREIII 58 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCC--------------------------CCeeeCCcceEE
Confidence 579999999 999999999999999998 55665553222 223334444444
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCcccccCCCCeEEcCCcc
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKPELNIVSNASCT 155 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~~~~~~V~~p~C~ 155 (265)
. ..++++ | .++|+||+|+|++.++++++.+.++|++.++.|++ ++++|..+|++|+++++...++|+||||+
T Consensus 59 ~-~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~ 133 (347)
T PRK06728 59 Q-EAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCS 133 (347)
T ss_pred E-eCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCH
Confidence 2 234443 3 57999999999999999999999999954445666 56799999999999998523799999999
Q ss_pred chhhhhHHHHHHHhcCeeEEEEEEEeeccccc-cccCC-----------CCCccccCc-------ccccccccccc----
Q 024629 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDG-----------PSSKDWRGG-------RAASFNIIPSS---- 212 (265)
Q Consensus 156 ~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~-~~~d~-----------~~~~~~~~g-------~~~~~n~~p~~---- 212 (265)
+|+++++|+||+++++|+++.+++++++||++ ..+++ .......++ ++++||++|++
T Consensus 134 tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~ 213 (347)
T PRK06728 134 ALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFT 213 (347)
T ss_pred HHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccc
Confidence 99999999999999999999999999999983 33332 112233455 89999999998
Q ss_pred -CChhhhH-------hhhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 213 -TGAAKAV-------GKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 213 -~~~~~~~-------~~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+|..+|+ +|++..-..++++||+||||++||..+++++|+++++.++++++|+
T Consensus 214 ~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~ 274 (347)
T PRK06728 214 DNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLF 274 (347)
T ss_pred cCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 3444444 4565211235999999999999999999999999999999999874
No 21
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=289.30 Aligned_cols=237 Identities=15% Similarity=0.160 Sum_probs=182.8
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||+|+|+ ||+|.||+|+|.+||++|+..++++...++.+ .+.||++. +.+ .+++ +.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~------~~~~p~l~-g~~-------------~l~~-~~ 60 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPV------SDVHPNLR-GLV-------------DLPF-QT 60 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCch------HHhCcccc-ccc-------------cccc-cc
Confidence 689999999 99999999999999999988888775444443 24577765 211 0111 22
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC----C--------------CC-CceEEee---eCc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP----S--------------KD-APMFVVG---VNE 139 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~----~--------------~~-~~~~v~g---vn~ 139 (265)
.|++++. ..++|+||.|+||+++++.++.+++.|++.+++|++ + ++ ...++|| +|+
T Consensus 61 ~~~~~~~--~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~ 138 (349)
T COG0002 61 IDPEKIE--LDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR 138 (349)
T ss_pred CChhhhh--cccCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCH
Confidence 3444431 256999999999999999999999999987777998 1 11 2478987 789
Q ss_pred ccccCCCCeEEcCCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCC---CCccccCccccccccccccCChh
Q 024629 140 NEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGP---SSKDWRGGRAASFNIIPSSTGAA 216 (265)
Q Consensus 140 ~~i~~~~~~V~~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~---~~~~~~~g~~~~~n~~p~~~~~~ 216 (265)
|+|+ ++++|+|||||+|+.+|+|+||.++..|......+++++||.+++...+ +++++..+...+|++ ..|.|.
T Consensus 139 e~i~-~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~--~~HrH~ 215 (349)
T COG0002 139 EKIR-GAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGL--TGHRHT 215 (349)
T ss_pred HHHh-cCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccc--cccCch
Confidence 9998 5999999999999999999999999666544446888988875443322 344444444445554 227788
Q ss_pred hhHhhhcccCC---CceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 217 KAVGKVLPALN---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 217 ~~~~~~~~e~~---~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+|+.|++..+. ..++|+||.+|++||+++|+|+++++.++.+|++++|+
T Consensus 216 pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~ 267 (349)
T COG0002 216 PEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYE 267 (349)
T ss_pred HHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHH
Confidence 99999988776 35899999999999999999999999999999999873
No 22
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=2.5e-39 Score=289.91 Aligned_cols=230 Identities=22% Similarity=0.308 Sum_probs=182.2
Q ss_pred EEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 5 KIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~--~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
||+|+|+ ||+|++|+++|.+ ||.++++.+++....++ .+.+.+..+.+ ..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~--------------------------~~~~~~~~~~~-~~ 53 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGR--------------------------KVTFKGKELEV-NE 53 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCC--------------------------eeeeCCeeEEE-Ee
Confidence 6999999 9999999999998 79999988877643332 12222322323 21
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCcccccC--CCCeEEcCCccc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKP--ELNIVSNASCTT 156 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~~--~~~~V~~p~C~~ 156 (265)
.+.++ | .++|+||+|+|++.++++++.++++|++.+..|++ +++.|..+||+|++.+++ ..++|+||||++
T Consensus 54 ~~~~~--~--~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 54 AKIES--F--EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred CChHH--h--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 22222 3 57999999999999999999999999943333554 346889999999999875 134999999999
Q ss_pred hhhhhHHHHHHHhcCeeEEEEEEEeeccccccc------------cCCCCCcc-------ccCcccccccccccc-----
Q 024629 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSSKD-------WRGGRAASFNIIPSS----- 212 (265)
Q Consensus 157 ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~------------~d~~~~~~-------~~~g~~~~~n~~p~~----- 212 (265)
|+++++|+||+++++|+++.++++|++||+++. .+.+.... ..+++++++|++|+.
T Consensus 130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~ 209 (339)
T TIGR01296 130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND 209 (339)
T ss_pred HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence 999999999999999999999999999997331 22221111 577889999999996
Q ss_pred CChhhhHhhhcccCC-------CceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 213 TGAAKAVGKVLPALN-------GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 213 ~~~~~~~~~~~~e~~-------~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+++.+|+.|+.+|+. .+++|+|+|||++|||+.++|++++++++.+|++++|+
T Consensus 210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~ 269 (339)
T TIGR01296 210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLK 269 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 578888888777764 36999999999999999999999999999999999884
No 23
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=2.3e-39 Score=289.88 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=180.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHc--CCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~--~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
++||+|+|+ ||+|++++|+|.+ ||.+++..+.+.+..++. +..++.++.+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~--------------------------~~~~~~~~~v- 59 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK--------------------------VTFEGRDYTV- 59 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe--------------------------eeecCceeEE-
Confidence 689999999 9999999999998 899999999776433321 1112222323
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCcccccCC------CCeEE
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKPE------LNIVS 150 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~~~------~~~V~ 150 (265)
...+++. | .++|+||+|+|++.++++++++.++|++.++.|++ +++.|..+|++|++.|+.. .++|+
T Consensus 60 ~~~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIa 135 (344)
T PLN02383 60 EELTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIA 135 (344)
T ss_pred EeCCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEE
Confidence 2223232 3 57999999999999999999999999965556777 4568899999999998841 23999
Q ss_pred cCCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccc-cCC-----------CCCccccCccccccccccccCC----
Q 024629 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDG-----------PSSKDWRGGRAASFNIIPSSTG---- 214 (265)
Q Consensus 151 ~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~-~d~-----------~~~~~~~~g~~~~~n~~p~~~~---- 214 (265)
||||++|+++++|+||+++++|+++.+++++++||+++. ++. .+.+...++++.+||++|++|.
T Consensus 136 nPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~ 215 (344)
T PLN02383 136 NPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQEN 215 (344)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccC
Confidence 999999999999999999999999999999999998432 222 1125678899999999999863
Q ss_pred -hh-hhHh------hhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 215 -AA-KAVG------KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 215 -~~-~~~~------~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+. +|+. +++..-..+++|||+|||++|||+.++|++++++++.++++++|+
T Consensus 216 g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~ 274 (344)
T PLN02383 216 GYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILA 274 (344)
T ss_pred CCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 22 2222 444211235999999999999999999999999999999999884
No 24
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-38 Score=284.80 Aligned_cols=231 Identities=16% Similarity=0.181 Sum_probs=176.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~e---l~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
+||||+|+ |++|++++|+|.+||+|+ +....+.. +++. .+.| +|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~-sg~~----------~~~f---------------~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ-AGGA----------APSF---------------GGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh-hCCc----------cccc---------------CCCcceEE
Confidence 79999999 999999999888898887 66644332 2211 1112 23223343
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE--cCC---CCCCceEEeeeCcccccCCC-----CeE
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNENEYKPEL-----NIV 149 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi--S~~---~~~~~~~v~gvn~~~i~~~~-----~~V 149 (265)
...+++. | .++|+||+|+|+++++++++.+.++|++.+|| |++ ++++|+.+|++|+++++. + ++|
T Consensus 56 ~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~iI 130 (369)
T PRK06598 56 DAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKTF 130 (369)
T ss_pred ecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCEE
Confidence 3222333 3 57999999999999999999999999542555 555 567999999999998874 3 589
Q ss_pred EcCCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccc-c-----------C-------------------------C
Q 024629 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-V-----------D-------------------------G 192 (265)
Q Consensus 150 ~~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~-~-----------d-------------------------~ 192 (265)
+||||++++++++|+||++.++|+++.+++++++||+++. + + +
T Consensus 131 anPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (369)
T PRK06598 131 VGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRS 210 (369)
T ss_pred EcCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhccc
Confidence 9999999999999999999988999999999999998432 1 1 1
Q ss_pred CCCccccCccccccccccccC-----ChhhhHh-------hhccc--CCCceeEEEEEeeecceEEEEEEEEeCCCCCHH
Q 024629 193 PSSKDWRGGRAASFNIIPSST-----GAAKAVG-------KVLPA--LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYD 258 (265)
Q Consensus 193 ~~~~~~~~g~~~~~n~~p~~~-----~~~~~~~-------~~~~e--~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~ 258 (265)
.......++++++||++|++. |.++|+. |++.. -..++++||+||||++||..+++++|+++++.+
T Consensus 211 ~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~ 290 (369)
T PRK06598 211 GDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLA 290 (369)
T ss_pred CCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHH
Confidence 112344567899999999983 4445444 56632 123589999999999999999999999999999
Q ss_pred HHHHHhC
Q 024629 259 EIKAAIK 265 (265)
Q Consensus 259 ~v~~~~~ 265 (265)
+++++|+
T Consensus 291 ~i~~~L~ 297 (369)
T PRK06598 291 EIEEILA 297 (369)
T ss_pred HHHHHHH
Confidence 9999874
No 25
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-38 Score=272.89 Aligned_cols=231 Identities=19% Similarity=0.273 Sum_probs=182.9
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCccccccee-eeCCceEEECCEEEEE
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK-VKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~-~~~~~~l~~~g~~i~~ 78 (265)
|..++||| |+ |.+|++++++|.++. |.+ .+.. ++ ++ . .+.|+.+.++|+++.+
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~-fpv-------~~l~----l~--~s----------~~~s~gk~i~f~g~~~~V 55 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSD-LEI-------EQIS----IV--EI----------EPFGEEQGIRFNNKAVEQ 55 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcC-Cch-------hhee----ec--cc----------ccccCCCEEEECCEEEEE
Confidence 77899999 99 999999999999873 421 1111 11 11 1 2335678888888877
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE---cCC--CCCCceEEeeeCcccccC--CCCeEEc
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNENEYKP--ELNIVSN 151 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi---S~~--~~~~~~~v~gvn~~~i~~--~~~~V~~ 151 (265)
.. .++.+| .++|++|+ ++..+++++++.+.++|+ +|| |++ ++|+|++||++|.++++. ..++|+|
T Consensus 56 ~~---l~~~~f--~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIan 127 (322)
T PRK06901 56 IA---PEEVEW--ADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSL 127 (322)
T ss_pred EE---CCccCc--ccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEEC
Confidence 43 344445 68999999 999999999999999999 777 444 678999999999998874 2579999
Q ss_pred CCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccc-cccCCC--------CC-ccccCccccccccccccC-ChhhhHh
Q 024629 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGP--------SS-KDWRGGRAASFNIIPSST-GAAKAVG 220 (265)
Q Consensus 152 p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~-~~~d~~--------~~-~~~~~g~~~~~n~~p~~~-~~~~~~~ 220 (265)
|+|+|+.++++|+||++.++|++..++|+|++||++ .++++. .+ ......++++||++|+.. +-..|.+
T Consensus 128 PNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~Etr 207 (322)
T PRK06901 128 PDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQ 207 (322)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHH
Confidence 999999999999999999999999999999999983 233221 00 011224889999999995 4567888
Q ss_pred hhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 221 KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 221 ~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|++|++ .+++.||+||||++||..+++++++++++.++++++|+
T Consensus 208 KIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~ 251 (322)
T PRK06901 208 KIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQ 251 (322)
T ss_pred HHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 999877 24899999999999999999999999999999999874
No 26
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=268.68 Aligned_cols=238 Identities=67% Similarity=1.075 Sum_probs=223.1
Q ss_pred CCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCCCCCCCccccCccEEEEecCCc
Q 024629 25 RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF 104 (265)
Q Consensus 25 ~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d~~~~~~~~~~~DvV~~atp~~ 104 (265)
..++++++++++..++++++|+++||++||+|+ +.+..+.+ .+.++|+.+.+++..+|.+++|...+.|+|+++|+.+
T Consensus 8 ~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f 85 (285)
T KOG0657|consen 8 RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVF 85 (285)
T ss_pred cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccc
Confidence 445999999999889999999999999999999 77766665 5667799999999899999999999999999999999
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccCCCCeEEcCCccchhhhhHHHHHHHhcCeeEEEEEEEeecc
Q 024629 105 TDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (265)
Q Consensus 105 ~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~s 184 (265)
++.+.+..+++.|+|++++|+++.|.|++++|+|.+.+..+..+|||.+|++++++|..+.++++|||.++.+|++|+.+
T Consensus 86 ~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~t 165 (285)
T KOG0657|consen 86 TTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAIT 165 (285)
T ss_pred cccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeec
Confidence 99999999999999999999999899999999999999875568999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHh
Q 024629 185 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI 264 (265)
Q Consensus 185 g~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~ 264 (265)
++|+.+|+|+++.|+.||...+|++|..+|.++++.+.+||++++++.++++||+. ....+++++++++.+.|+++++.
T Consensus 166 atQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvv 244 (285)
T KOG0657|consen 166 ATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVV 244 (285)
T ss_pred cccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999 99999999999999999999876
Q ss_pred C
Q 024629 265 K 265 (265)
Q Consensus 265 ~ 265 (265)
+
T Consensus 245 k 245 (285)
T KOG0657|consen 245 K 245 (285)
T ss_pred H
Confidence 3
No 27
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-37 Score=269.54 Aligned_cols=232 Identities=23% Similarity=0.320 Sum_probs=176.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHc-CCCeEEEEEecc-CCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQ-RDDVELVAVNDP-FITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~-~p~~el~~i~~~-~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
|+||||+|+ |.+|++++++|.+ |+.++.+.+... +..++. | +.+.++.+.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~----------~---------------~~f~~~~~~v~ 55 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK----------Y---------------IEFGGKSIGVP 55 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCc----------c---------------ccccCccccCc
Confidence 479999999 9999999999998 888885554443 222221 1 22222222221
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE---cCC--CCCCceEEeeeCcccccC--CCC-eEEc
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNENEYKP--ELN-IVSN 151 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi---S~~--~~~~~~~v~gvn~~~i~~--~~~-~V~~ 151 (265)
. .-.+..+| .++|+||+|.|..+++++.+++.++|+ +|| |+. ++|+|++|+++|.+++.. ..+ +|+|
T Consensus 56 ~-~~~~~~~~--~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 56 E-DAADEFVF--SDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred c-cccccccc--ccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEEC
Confidence 1 01333444 489999999999999999999999998 888 444 578999999999888664 133 9999
Q ss_pred CCccchhhhhHHHHHHHhcCeeEEEEEEEeecccccc-ccCCCC---------CccccCccccccccccccCC-----hh
Q 024629 152 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPS---------SKDWRGGRAASFNIIPSSTG-----AA 216 (265)
Q Consensus 152 p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~-~~d~~~---------~~~~~~g~~~~~n~~p~~~~-----~~ 216 (265)
|+|++..++++|+||+++++|+++.++|+|++||++. .++... ..-.-.+++++||++|++.+ ++
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t 210 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYT 210 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCcc
Confidence 9999999999999999999999999999999999854 333210 01111268899999999954 55
Q ss_pred hhHh-------hhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHh
Q 024629 217 KAVG-------KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI 264 (265)
Q Consensus 217 ~~~~-------~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~ 264 (265)
+|++ |+++.-..+++++|+|||+++||+..++++|+++++.+|+++.+
T Consensus 211 ~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~ 265 (334)
T COG0136 211 KEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL 265 (334)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHH
Confidence 6655 45554445799999999999999999999999999999998653
No 28
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=1.8e-36 Score=268.03 Aligned_cols=230 Identities=25% Similarity=0.330 Sum_probs=191.0
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChh---hhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTD---YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 6 V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~---~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
|||+|+|++|+.++|.+.++|++||++|++. +.+ .+++++.||+.|+.+. ..+..+. ..+.+. .
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~--------~~l~v~--g 67 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEE--------AGIEVA--G 67 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEecc--------CceEec--C
Confidence 6999999999999999998899999999995 444 6777778998873322 1222211 123332 2
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCC--CceEEeeeCcccccCCCCeEEcCCccchhhh
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLA 160 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~--~~~~v~gvn~~~i~~~~~~V~~p~C~~ta~~ 160 (265)
+++++. .++|+|++|||.+.+.+..+.+++.|+|.+++|++.++ +++|++|+|.+.+.. .++|+|.||+||+++
T Consensus 68 ~~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~-~~~vs~aSCtTn~La 143 (333)
T TIGR01546 68 TLEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG-KDYVRVVSCNTTGLV 143 (333)
T ss_pred CHHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc-CceEEecCchHhhHH
Confidence 456662 57999999999999999999999999999999999665 468999999999874 569999999999999
Q ss_pred hHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccc-cC---ChhhhHhhhcccCCCceeEEEEE
Q 024629 161 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMAFR 236 (265)
Q Consensus 161 l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~-~~---~~~~~~~~~~~e~~~~v~~~~~~ 236 (265)
+.+++|.++|||+++.+|++|+ +++|+ +++.|| +.|++|. .+ .+.+.+.+++|+++ +...++|
T Consensus 144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr 210 (333)
T TIGR01546 144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV 210 (333)
T ss_pred HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence 9999999999999999999997 66553 456676 5889988 22 45799999999998 9999999
Q ss_pred eeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 237 VPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 237 vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
||+..+|+++++++++++++.|||+++|+
T Consensus 211 VPt~~vs~~dl~v~l~~~~t~eeV~~~l~ 239 (333)
T TIGR01546 211 VPTTLMHVHSIMVELKKPVTKDDIIDILE 239 (333)
T ss_pred eCCCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999885
No 29
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=6.2e-37 Score=275.48 Aligned_cols=235 Identities=16% Similarity=0.184 Sum_probs=174.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec-cCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND-PFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~-~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
+||+|+|+ |++|++++|+|.+||+++++++.+ +...++.+. +.++.+. + . ....+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~------~~~~~l~-~---------~----~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS------EVHPHLR-G---------L----VDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH------HhCcccc-c---------c----CCcee-ec
Confidence 48999999 999999999999999999998744 322232221 1233222 0 0 00112 11
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CC-------------------CCceEEeeeCc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SK-------------------DAPMFVVGVNE 139 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~-------------------~~~~~v~gvn~ 139 (265)
.+.+++ . .++|+||+|+|++.++++++.+.++|++.++.|++ ++ +.+..+|++|+
T Consensus 60 ~~~~~~--~-~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~ 136 (346)
T TIGR01850 60 IDEEEI--A-EDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR 136 (346)
T ss_pred CCHHHh--h-cCCCEEEECCCchHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence 233332 1 37999999999999999999999999855555776 22 24556677999
Q ss_pred ccccCCCCeEEcCCccchhhhhHHHHHHHhcCee--EEEEEEEeeccccccccCCCCCccccCccccccccccccCChhh
Q 024629 140 NEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK 217 (265)
Q Consensus 140 ~~i~~~~~~V~~p~C~~ta~~l~L~pL~~~~~i~--~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~ 217 (265)
+.++. +++|+||||++|+++++|+||++++++. +..+++++++||+++......+..+..+...++|++|++ |.+
T Consensus 137 ~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~~~~y~~~~h~--h~~ 213 (346)
T TIGR01850 137 EEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEVNENLRPYKVTGHR--HTP 213 (346)
T ss_pred HHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhhcCCeeeeccCCcC--cHH
Confidence 99984 8899999999999999999999998886 577889999999865433334445555556667777644 667
Q ss_pred hHhhhcccCC---CceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 218 AVGKVLPALN---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 218 ~~~~~~~e~~---~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+.+++..+. .+++|+|+|||++|||+.++|++++++++.++++++|+
T Consensus 214 Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~ 264 (346)
T TIGR01850 214 EIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYE 264 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHH
Confidence 7776665442 25999999999999999999999999999999999884
No 30
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=7.2e-37 Score=267.16 Aligned_cols=216 Identities=11% Similarity=0.052 Sum_probs=166.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
.||+|+|+ ||+|.||+|+|.+||++|++.+++.+. . . . .
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-~----------------~--------------------~---~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-K----------------D--------------------A---A 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-c----------------C--------------------c---C
Confidence 58999999 999999999999999999999987631 0 0 0 0
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeC---cccccCCCCeEEcCCccc
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVN---ENEYKPELNIVSNASCTT 156 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn---~~~i~~~~~~V~~p~C~~ 156 (265)
+.+++ ..++|+||+|+|++.++++++.+.++|++.++.|++ +++.+..+||+| ++.|+ ++++|+|||||+
T Consensus 42 ~~~~~---~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC~a 117 (310)
T TIGR01851 42 ERAKL---LNAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGCYP 117 (310)
T ss_pred CHhHh---hcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCCHH
Confidence 11222 146899999999999999999999999966666887 456777788895 56676 489999999999
Q ss_pred hhhhhHHHHHHHhcCeeEEEEEEEeeccccccc---cCCCCC----ccccCccccccccccccCChhhhHhhhcccCCCc
Q 024629 157 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT---VDGPSS----KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 229 (265)
Q Consensus 157 ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~---~d~~~~----~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~ 229 (265)
|+++++|+||+++..+++..+++++++||.++. .....+ +.++.+...+|++. ..|.|.+|+.+++..+ .+
T Consensus 118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~-~~HrH~pEi~q~l~~~-~~ 195 (310)
T TIGR01851 118 TGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLA-LTHKHLPEMRVHSGLA-LP 195 (310)
T ss_pred HHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccchhhccCceeccCC-CCCCcHHHHHHHhCCC-CC
Confidence 999999999999877765546999999985332 211122 23333444444442 1366778888877544 45
Q ss_pred eeEEEEEeeecceEEEEEEEEe---CCCCCHHHHHHHhC
Q 024629 230 LTGMAFRVPTVDVSVVDLTVRL---EKDASYDEIKAAIK 265 (265)
Q Consensus 230 v~~~~~~vP~~~G~~~~~~~~l---~~~~~~~~v~~~~~ 265 (265)
+.|+||.+|++||+++|+|+++ +++++.+|++++|+
T Consensus 196 v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~ 234 (310)
T TIGR01851 196 PIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALA 234 (310)
T ss_pred EEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999 88899999999884
No 31
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=3.2e-36 Score=270.70 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=177.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||+|+|+ |++|++++++|.+||+++++++.++....+.++ ..++.+. + . . ...+ .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~------~~~~~~~--------~--~--~--~~~~-~- 59 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS------DVHPHLR--------G--L--V--DLVL-E- 59 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH------HhCcccc--------c--c--c--Ccee-e-
Confidence 489999999 999999999999999999999988643332221 1122111 0 0 0 0112 1
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CC-C------------------CceEEeeeCc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SK-D------------------APMFVVGVNE 139 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~-~------------------~~~~v~gvn~ 139 (265)
+.++..+ .++|+||+|+|++.+.++++.++++|+..++.|++ ++ + .+..++++|+
T Consensus 60 -~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~ 136 (343)
T PRK00436 60 -PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNR 136 (343)
T ss_pred -cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCH
Confidence 2222222 56999999999999999999999999844445766 22 2 4566677999
Q ss_pred ccccCCCCeEEcCCccchhhhhHHHHHHHhcCee--EEEEEEEeeccccccccCCCCCccccCccccccccccccCChhh
Q 024629 140 NEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK 217 (265)
Q Consensus 140 ~~i~~~~~~V~~p~C~~ta~~l~L~pL~~~~~i~--~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~ 217 (265)
++|++ +++|+||||++|+++++|+||+++++|+ ++.+++++++||.++......+..+..+...+||++|++ |.+
T Consensus 137 ~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~--h~~ 213 (343)
T PRK00436 137 EEIKG-ARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHR--HTP 213 (343)
T ss_pred HHhcC-CCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCC--CHH
Confidence 99985 7999999999999999999999988887 788899999999855332223334445556688887765 567
Q ss_pred hHhhhcccCCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 218 AVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 218 ~~~~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
|+.+++..+.++++|+|+|||++|||+.++|++++++++.+|++++|+
T Consensus 214 Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~ 261 (343)
T PRK00436 214 EIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYE 261 (343)
T ss_pred HHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 777766554336999999999999999999999999999999999884
No 32
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=2.3e-36 Score=272.40 Aligned_cols=237 Identities=21% Similarity=0.266 Sum_probs=175.7
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE-eccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i-~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
|||+||+|+|+ |++|++++|+|.+||+++|+.+ .+.+..++.+. +.++....+... + .+ ..+.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~------~~~~~~~~~~~~---~-~~----~~~~v 66 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYG------EAVRWQLDGPIP---E-EV----ADMEV 66 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccc------cccccccccccc---c-cc----cceEE
Confidence 78899999999 9999999999999999999999 55433333221 111110000000 0 00 11222
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCccccc----------CC
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYK----------PE 145 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~----------~~ 145 (265)
...+++.+ .++|+||+|+|++.+.++++.+.+.|++.++.|++ .++.|..++++|.+.+. ++
T Consensus 67 -~~~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~ 141 (349)
T PRK08664 67 -VSTDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD 141 (349)
T ss_pred -EeCCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence 22344433 47999999999999999999999999876666776 23466778888865431 23
Q ss_pred CCeEEcCCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCC----hhhhHhh
Q 024629 146 LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----AAKAVGK 221 (265)
Q Consensus 146 ~~~V~~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~----~~~~~~~ 221 (265)
+++|+|||||+|+++++|+||.+ ++|+++.+++++++||+++.... ...+++|++|+..+ |.+|..+
T Consensus 142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~~--------~~~~~~N~~p~~~~~ehrh~~Ei~~ 212 (349)
T PRK08664 142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGVP--------SMDIVDNVIPYIGGEEEKIEKETLK 212 (349)
T ss_pred ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccch--------hhhhhcCcccccCchhhhhhHHHHH
Confidence 57999999999999999999999 89999999999999998654221 34578899998743 4566666
Q ss_pred hcccC--------CCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 222 VLPAL--------NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 222 ~~~e~--------~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
++... ..+++|+++|||++|||++++|++++++++.+|++++|+
T Consensus 213 ~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~ 264 (349)
T PRK08664 213 ILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALE 264 (349)
T ss_pred HhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 65443 456999999999999999999999999999999999884
No 33
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=2.5e-36 Score=265.54 Aligned_cols=217 Identities=12% Similarity=0.068 Sum_probs=165.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||||+|+ ||+|++|+|+|.+||+++++++.+.... . +
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--------------------------~--~------------ 41 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--------------------------D--A------------ 41 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--------------------------c--c------------
Confidence 599999999 9999999999999999999999765210 0 1
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeC---cccccCCCCeEEcCCcc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVN---ENEYKPELNIVSNASCT 155 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn---~~~i~~~~~~V~~p~C~ 155 (265)
.+.++. | .++|+||+|+|++.++++++++.+.|++.++.|++ +++.+..+|++| ++.|+ ++++|+|||||
T Consensus 42 ~~~~~~-~--~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanPgC~ 117 (313)
T PRK11863 42 AARREL-L--NAADVAILCLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANPGCY 117 (313)
T ss_pred cCchhh-h--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcCCcH
Confidence 011111 2 46899999999999999999999999966666887 456778888896 45666 47899999999
Q ss_pred chhhhhHHHHHHHhcCeeEEEEEEEeecccccccc---CCCCC--ccccCccccccccccccCChhhhHhhhcccCCCce
Q 024629 156 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV---DGPSS--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKL 230 (265)
Q Consensus 156 ~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~---d~~~~--~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v 230 (265)
+|+++++|+||+++..++....++++++||++... ....+ +++..+...+|.+. +.|.|.+|+.|++..+ -++
T Consensus 118 ~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~~~~~~~n~~~Y~~~-~~HrH~pEi~~~l~~~-~~~ 195 (313)
T PRK11863 118 PTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAAPDGKAPAFRLYGLG-LAHKHLPEMQAHAGLA-RRP 195 (313)
T ss_pred HHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHHHhhhhhhhccCeeeccCC-cCCcchHHHHHHhccc-cCc
Confidence 99999999999998777654458999998753321 11122 33334433333321 1356777777777654 358
Q ss_pred eEEEEEeeecceEEEEEEEEe---CCCCCHHHHHHHhC
Q 024629 231 TGMAFRVPTVDVSVVDLTVRL---EKDASYDEIKAAIK 265 (265)
Q Consensus 231 ~~~~~~vP~~~G~~~~~~~~l---~~~~~~~~v~~~~~ 265 (265)
.|+++.+|++|||+.|+|+++ +++++.+|++++|+
T Consensus 196 ~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T PRK11863 196 IFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALA 233 (313)
T ss_pred EEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHH
Confidence 899999999999999999997 88899999999884
No 34
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-35 Score=266.25 Aligned_cols=233 Identities=26% Similarity=0.329 Sum_probs=177.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeee--cccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~--~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+||||+|+|++|+.+++++.++|++||+++++.. .++.+++++|. ..++.++ .... .+++..+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~--~~~~~~la~~~G~~~~~~~~-~~~~-------~~~~~~i~V~- 69 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK--PDYEARVAVEKGYPLYVADP-EREK-------AFEEAGIPVA- 69 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC--hHHHHHHHHhcCCCccccCc-cccc-------cccCCceEEc-
Confidence 47999999999999999999999999999999863 45555555421 1333332 1100 0122223332
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC-CCCC--ceEEeeeCcccccCCCCeEEcCCccch
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDA--PMFVVGVNENEYKPELNIVSNASCTTN 157 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~-~~~~--~~~v~gvn~~~i~~~~~~V~~p~C~~t 157 (265)
.+++++ ..++|+||+|||.+.+.+.++.++++|+ ++|+++. ..++ ..++||+|++.+.. .++|+||||+||
T Consensus 70 -~~~~el---~~~vDVVIdaT~~~~~~e~a~~~~~aGk-~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~ 143 (341)
T PRK04207 70 -GTIEDL---LEKADIVVDATPGGVGAKNKELYEKAGV-KAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTT 143 (341)
T ss_pred -CChhHh---hccCCEEEECCCchhhHHHHHHHHHCCC-EEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHH
Confidence 234444 2579999999999999999999999995 4666555 2333 34799999998874 458999999999
Q ss_pred hhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCcccccccccccc----CChhhhHhhhcccCCCceeEE
Q 024629 158 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM 233 (265)
Q Consensus 158 a~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~----~~~~~~~~~~~~e~~~~v~~~ 233 (265)
+++++|+||+++|||+++.+|++|+.|+. .++ .|.+..|++|.. ..+.+++.+++|+++ ++++
T Consensus 144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td~---------~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~ 210 (341)
T PRK04207 144 GLCRTLCALDRAFGVKKVRATLVRRAADP---------KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM 210 (341)
T ss_pred HHHHHHHHHHHhcCceEEEEEEEEcCCCc---------chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence 99999999999999999999999997631 122 245566776531 122378889999997 9999
Q ss_pred EEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 234 AFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 234 ~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
++|||+++||+.+++++|+++++.||++++|+
T Consensus 211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~ 242 (341)
T PRK04207 211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALE 242 (341)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999884
No 35
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=4.1e-36 Score=267.84 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=175.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeE---EEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVE---LVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~e---l~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
+||||+|+ |.+|++++++|.+|++|. +..+.+.+ +.|+.+.++++...+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--------------------------s~g~~~~f~~~~~~v~ 54 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--------------------------LGQAAPSFGGTTGTLQ 54 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--------------------------hCCCcCCCCCCcceEE
Confidence 48999999 999999999999887774 23333321 1122233344444342
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE---cCC--CCCCceEEeeeCcccccCC--CCe--EE
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNENEYKPE--LNI--VS 150 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi---S~~--~~~~~~~v~gvn~~~i~~~--~~~--V~ 150 (265)
. .++.+ +| .++|+||+|+|..+++++.+.+.++|+..+|| |++ ++|+|++||++|++.++.. ..+ |+
T Consensus 55 ~-~~~~~-~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ia 130 (366)
T TIGR01745 55 D-AFDID-AL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFV 130 (366)
T ss_pred c-Ccccc-cc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEE
Confidence 2 22211 23 58999999999999999999999999433777 333 6789999999999887641 346 89
Q ss_pred cCCccchhhhhHHHHHHHhcCeeEEEEEEEeecccccc-cc-----------C--------C-----------------C
Q 024629 151 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TV-----------D--------G-----------------P 193 (265)
Q Consensus 151 ~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~-~~-----------d--------~-----------------~ 193 (265)
||+|+++.++++|+||+++++|+++.++|||++||++. .+ + + .
T Consensus 131 nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~ 210 (366)
T TIGR01745 131 GGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSG 210 (366)
T ss_pred CcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccC
Confidence 99999999999999999999999999999999999852 11 1 0 0
Q ss_pred CCccccCccccccccccccC-----ChhhhHh-------hhccc-CCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHH
Q 024629 194 SSKDWRGGRAASFNIIPSST-----GAAKAVG-------KVLPA-LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEI 260 (265)
Q Consensus 194 ~~~~~~~g~~~~~n~~p~~~-----~~~~~~~-------~~~~e-~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v 260 (265)
......++++++||++|++. |+++|+. |++.. -..++++||+||||++||..+++++|+++++.+++
T Consensus 211 ~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i 290 (366)
T TIGR01745 211 ELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETI 290 (366)
T ss_pred CCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHH
Confidence 11244678899999999984 4445544 56633 12359999999999999999999999999999999
Q ss_pred HHHhC
Q 024629 261 KAAIK 265 (265)
Q Consensus 261 ~~~~~ 265 (265)
+++|+
T Consensus 291 ~~~L~ 295 (366)
T TIGR01745 291 EEIIR 295 (366)
T ss_pred HHHHH
Confidence 99874
No 36
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=1.3e-35 Score=266.88 Aligned_cols=235 Identities=19% Similarity=0.263 Sum_probs=175.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCC-ChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~-~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
+||+|+|+ |++|++++++|.+||+++++++.+... .++.+. ..++.+.++... + .+ .++.+ ..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~------~~~~~~~~~~~~---~-~~----~~~~~-~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYG------EAVKWIEPGDMP---E-YV----RDLPI-VE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcch------hhccccccCCCc---c-cc----ceeEE-Ee
Confidence 48999999 999999999999999999999965432 222221 112211000000 0 00 11222 22
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCcccccC---------CCCeE
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKP---------ELNIV 149 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~~---------~~~~V 149 (265)
.+++. | .++|+||+|+|++.+.++.+.+.++|++.++.|++ +++.|.+++++|.+.+.. ++++|
T Consensus 66 ~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iV 141 (341)
T TIGR00978 66 PEPVA--S--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIV 141 (341)
T ss_pred CCHHH--h--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEE
Confidence 23332 2 57999999999999999999999999976556877 455788888888653321 35799
Q ss_pred EcCCccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCC----hhhhHhhhccc
Q 024629 150 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG----AAKAVGKVLPA 225 (265)
Q Consensus 150 ~~p~C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~----~~~~~~~~~~e 225 (265)
+|||||+|+++++|+||+++++|+++.+++++++||+++.... .+.+++|++|+..+ +.+|+.++++.
T Consensus 142 anPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~--------~~~~~~Ni~py~~~~ehrh~~Ei~~il~~ 213 (341)
T TIGR00978 142 TNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVP--------SMDILDNIIPHIGGEEEKIERETRKILGK 213 (341)
T ss_pred eCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCc--------cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998654211 24578899999843 45677788876
Q ss_pred CCC--------ceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 226 LNG--------KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 226 ~~~--------~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+.+ +++|+|++||++|||++++|++++++++.++++++|+
T Consensus 214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~ 261 (341)
T TIGR00978 214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALK 261 (341)
T ss_pred cccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 532 5899999999999999999999999999999999884
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=1.2e-34 Score=262.61 Aligned_cols=232 Identities=14% Similarity=0.089 Sum_probs=161.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
++||+|+|+ |++|++++|+|.+||+++|+.+.+....++.+. ..++.+. .+ ....+..
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~------~~~~~l~--------------~~-~~~~~~~ 96 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG------SVFPHLI--------------TQ-DLPNLVA 96 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch------hhCcccc--------------Cc-cccceec
Confidence 579999999 999999999999999999999988654443221 1122221 00 1111111
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCC--------Cce--------EEee---eCc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKD--------APM--------FVVG---VNE 139 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~--------~~~--------~v~g---vn~ 139 (265)
.+.++ | .++|+||+|+|++.++++++.+ +.|++.+++|++ +++ .|. ++|| +|+
T Consensus 97 ~~~~~--~--~~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r 171 (381)
T PLN02968 97 VKDAD--F--SDVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQR 171 (381)
T ss_pred CCHHH--h--cCCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCH
Confidence 12222 2 5799999999999999999985 688865666777 222 232 3444 678
Q ss_pred ccccCCCCeEEcCCccchhhhhHHHHHHHhcCe--eEEEEEEEeeccccccccCCCCCccccCc--cccccccccccCCh
Q 024629 140 NEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSSKDWRGG--RAASFNIIPSSTGA 215 (265)
Q Consensus 140 ~~i~~~~~~V~~p~C~~ta~~l~L~pL~~~~~i--~~~~~~~~~~~sg~~~~~d~~~~~~~~~g--~~~~~n~~p~~~~~ 215 (265)
++++ ++++|+|||||+|+++++|+||+++++| ++..+++++++||.++.....++.....+ +..++|.+ .|
T Consensus 172 ~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~n~~~y~~~~h----~h 246 (381)
T PLN02968 172 EEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAEGIGAYGVTRH----RH 246 (381)
T ss_pred HHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcccceeeccCCC----CC
Confidence 8887 4889999999999999999999999989 56778899999988544332222222222 22233332 33
Q ss_pred hhhHhhhccc---CCCceeEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 216 AKAVGKVLPA---LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 216 ~~~~~~~~~e---~~~~v~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
.+|+++.+.. ....++|||++||++|||+.++|++++++++.+|++++|+
T Consensus 247 ~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~ 299 (381)
T PLN02968 247 VPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLK 299 (381)
T ss_pred cchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 3443322211 1234999999999999999999999999999999999884
No 38
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=2.1e-34 Score=228.45 Aligned_cols=149 Identities=56% Similarity=0.997 Sum_probs=135.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d 83 (265)
+||||+|||+|||.++|++..+|++|+++|++...+.+.++||++|||+||+|. +.+..+++ .|.++|+.+++++..|
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 699999999999999999999999999999999878999999999999999998 77776655 6999999999999899
Q ss_pred CCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCC--CceEEeeeCcccccCCCCeEEcCCc
Q 024629 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASC 154 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~--~~~~v~gvn~~~i~~~~~~V~~p~C 154 (265)
|+++||...++|+|+||||.+.+++.++.++++|+|+|++|++.++ ++++|||+|.+.++++.++||++||
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999999999999999999999999999999999999999999655 8999999999999974599999999
No 39
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.97 E-value=6.6e-31 Score=208.77 Aligned_cols=148 Identities=55% Similarity=0.946 Sum_probs=134.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d 83 (265)
+||||+|+|++|+.++|.+.++|+++++++++. .+++.++||++||++||+|. +.+..+++ .+.++|+.+.+++..+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence 589999999999999999999999999999997 58999999999999999998 66665555 6889999999998889
Q ss_pred CCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCC-CceEEeeeCcccccCCCCeEEcCCc
Q 024629 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASC 154 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~-~~~~v~gvn~~~i~~~~~~V~~p~C 154 (265)
|.+++|.+.++|+|+|||+.+.+++.++.++++|+|+|++|++.++ .+++|||+|.+.++++.++|||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 9999999999999999999999999999999999999999999665 4589999999999865569999999
No 40
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=99.93 E-value=1e-25 Score=186.49 Aligned_cols=229 Identities=14% Similarity=0.165 Sum_probs=158.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
.+||+.+|+ ||+|+++++++.+||++|+..+.++.-.++++- .|++.. +.+. ++ +.
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-------~ytk~e-----------iqy~--~l---st 75 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-------VYTKLE-----------IQYA--DL---ST 75 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-------Ccchhh-----------eeec--cc---ch
Confidence 489999999 999999999999999999999998865554321 122211 1000 01 11
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE--cCCCCCCc--eEEee---eC-cccccCCCCeEEcCC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAP--MFVVG---VN-ENEYKPELNIVSNAS 153 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi--S~~~~~~~--~~v~g---vn-~~~i~~~~~~V~~p~ 153 (265)
.|...+.. ...+|..+.++|..+-+.++.......-|.++| |++.--.| .++|| +| |++|++ ++.|+|||
T Consensus 76 ~D~~klee-~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~n-a~~iaNPG 153 (340)
T KOG4354|consen 76 VDAVKLEE-PHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKN-ARLIANPG 153 (340)
T ss_pred hhHHHhhc-CCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhh-hhhccCCC
Confidence 12211110 135788888899887777776655443344444 77732233 78887 67 888984 89999999
Q ss_pred ccchhhhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCcccccccccccc---CChhhhHhhhcccCCCce
Q 024629 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKL 230 (265)
Q Consensus 154 C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~---~~~~~~~~~~~~e~~~~v 230 (265)
||+|.+-+.|-||.+...... .+.++||.+++...++.+. .-..++.|++|+. |-|.+|+.+- +...+
T Consensus 154 CYaTgsQl~l~Pllk~i~g~p----~ifgvSGySGAGtkpspkN--d~~~l~nnlipY~ltdHiHerEIs~r---~k~~V 224 (340)
T KOG4354|consen 154 CYATGSQLPLVPLLKAILGKP----EIFGVSGYSGAGTKPSPKN--DYSELANNLIPYGLTDHIHEREISQR---SKVTV 224 (340)
T ss_pred cccccCcccchHHHHHhcCCc----ceeeeccccCCCCCCCCcc--CHHHHhcCCccccccccchhHhHHHh---hCCce
Confidence 999999999999998754432 2566677654433333221 1234666788876 3444555442 34469
Q ss_pred eEEEEEeeecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 231 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 231 ~~~~~~vP~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+|++|..|+++|+..|+++.+++.++.+|+++.|+
T Consensus 225 aF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk 259 (340)
T KOG4354|consen 225 AFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYK 259 (340)
T ss_pred eechhHHHHhhhceEEEEEeecCcccHHHHHHHHH
Confidence 99999999999999999999999999999999985
No 41
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.90 E-value=4.3e-24 Score=178.07 Aligned_cols=236 Identities=17% Similarity=0.235 Sum_probs=170.5
Q ss_pred CCccEEE-EEcc-ChhHHHHHHHHHcCCCeEEEEEeccC-CChhhhhhheeeecccCcccccceeeeCCceEEECCEEEE
Q 024629 1 MGKVKIG-INGF-GRIGRLVARVILQRDDVELVAVNDPF-ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~~~~V~-IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~-~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~ 77 (265)
|+-.|+| |+|+ |.+|++++-+|.+||++++..+.... ..++..+ ..++|++....++.. ..+.
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya-------~a~~wkqt~~lp~~~-------~e~~ 66 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYA-------FAGNWKQTDLLPESA-------HEYT 66 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceE-------ecccchhcccccchh-------hhhh
Confidence 6666787 9999 99999999999999999998884433 2344322 245666322111111 1222
Q ss_pred EEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC-----CCCCceEEeeeCcccccC--------
Q 024629 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-----SKDAPMFVVGVNENEYKP-------- 144 (265)
Q Consensus 78 ~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~-----~~~~~~~v~gvn~~~i~~-------- 144 (265)
+ .+.+++.+ .+||+||+.++...+.+.-+.+.++|. +++|.. .+++|++||.+|+|+++.
T Consensus 67 V-~ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~ 139 (361)
T KOG4777|consen 67 V-EECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTG 139 (361)
T ss_pred H-hhcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccC
Confidence 2 23455655 689999999999999999999999998 777655 245999999999988762
Q ss_pred ---CCCeEEcCCccchhhhhHHHHHHHhcC-eeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhh---
Q 024629 145 ---ELNIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAK--- 217 (265)
Q Consensus 145 ---~~~~V~~p~C~~ta~~l~L~pL~~~~~-i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~--- 217 (265)
..-+|+|++|.|..+..+|+||+.+|| |.+-.++++|++||++-.-..+ +-.+..|++|.+.+...
T Consensus 140 k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv~-------~vdildnilp~iggee~k~e 212 (361)
T KOG4777|consen 140 KMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGVE-------LVDILDNILPGIGGEENKFE 212 (361)
T ss_pred CCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCch-------HHHHHHhhcCCCCccchhhh
Confidence 246999999999999999999999995 7777789999999975321111 23456688888865321
Q ss_pred -hHhhhcccCC-----------CceeEEEEEeeecceEEEEEEEEeCCC--CCHHHHHHHh
Q 024629 218 -AVGKVLPALN-----------GKLTGMAFRVPTVDVSVVDLTVRLEKD--ASYDEIKAAI 264 (265)
Q Consensus 218 -~~~~~~~e~~-----------~~v~~~~~~vP~~~G~~~~~~~~l~~~--~~~~~v~~~~ 264 (265)
|..+++...+ ..++..|-|||+..||+..+..+|+.+ .+.+++.+++
T Consensus 213 wet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l 273 (361)
T KOG4777|consen 213 WETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLL 273 (361)
T ss_pred HHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHH
Confidence 2334443221 146788999999999999999999844 3677777765
No 42
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.81 E-value=1.9e-19 Score=144.32 Aligned_cols=106 Identities=66% Similarity=0.986 Sum_probs=99.7
Q ss_pred hhhHHHHHHHhcCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhhhcccCCCceeEEEEEee
Q 024629 159 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 238 (265)
Q Consensus 159 ~~l~L~pL~~~~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~~~~e~~~~v~~~~~~vP 238 (265)
+++.+++|.++|||+++.+|++|+++..|..+|+++ ++++.||..++|++|..+++.+++.+++|+++++++..++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 578999999999999999999999999999999976 8999999999999999999999999999999999999999999
Q ss_pred ecceEEEEEEEEeCCCCCHHHHHHHhC
Q 024629 239 TVDVSVVDLTVRLEKDASYDEIKAAIK 265 (265)
Q Consensus 239 ~~~G~~~~~~~~l~~~~~~~~v~~~~~ 265 (265)
+..||+++++++++++++.|||+++|+
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~ 106 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALK 106 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHH
T ss_pred ecccCceEEEEecccchhhhhhhhhhh
Confidence 999999999999999999999999874
No 43
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.72 E-value=5.6e-17 Score=141.89 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=108.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+++||||+|.|.+|..++..+.+.|++++++++++..+....++ ...+ | +....
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~----A~~~------------G---------i~~~~ 56 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR----ARRL------------G---------VATSA 56 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH----HHHc------------C---------CCccc
Confidence 458999999999999999998888999999999987432211110 0001 1 00100
Q ss_pred cCCCC----CCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE-cCCCCCCceEEeeeCcccccC--CCCeEEcCC
Q 024629 81 VRNPE----EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNENEYKP--ELNIVSNAS 153 (265)
Q Consensus 81 ~~d~~----~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi-S~~~~~~~~~v~gvn~~~i~~--~~~~V~~p~ 153 (265)
.+.+ +.+| .++|+||+|||+..+.++++.++++|+ .++ ..+....|++||++|.+++.. +.++|+|||
T Consensus 57 -~~ie~LL~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~ 131 (302)
T PRK08300 57 -EGIDGLLAMPEF--DDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGG 131 (302)
T ss_pred -CCHHHHHhCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECcc
Confidence 1111 1112 569999999999999999999999997 444 222225899999999877653 358999999
Q ss_pred ccchhhhhHHHHHHHhcCeeEEEEEEEeecc
Q 024629 154 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 184 (265)
Q Consensus 154 C~~ta~~l~L~pL~~~~~i~~~~~~~~~~~s 184 (265)
|.++.++.+|+|+.+ ..+.+.. .+++++|
T Consensus 132 ~ati~~v~Al~~v~~-~~~~eIv-at~~s~s 160 (302)
T PRK08300 132 QATIPIVAAVSRVAP-VHYAEIV-ASIASKS 160 (302)
T ss_pred HHHHHHHHHhcccCc-Cceeeee-eeehhhc
Confidence 999999999999653 3555543 6677765
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.71 E-value=1.9e-17 Score=127.41 Aligned_cols=114 Identities=26% Similarity=0.326 Sum_probs=83.8
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCC-ChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~-~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
||+|+|+ ||+|++++++|.+||+++++.+.+++. .++.+. ..++.+. + . ..+.+.. .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~------~~~~~~~-~------~-------~~~~~~~-~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS------EVFPHPK-G------F-------EDLSVED-A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH------HTTGGGT-T------T-------EEEBEEE-T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee------hhccccc-c------c-------cceeEee-c
Confidence 7999998 999999999999999999999999876 344333 2333222 0 0 1222322 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC---CCCCceEEeeeCccccc
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYK 143 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~---~~~~~~~v~gvn~~~i~ 143 (265)
+.+++ .++|+||+|+|++.++++++.+++.|++.+..|++ +++.|..+|++|+++|+
T Consensus 60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred chhHh----hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 34433 68999999999999999999999999955555776 34688889999999886
No 45
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.55 E-value=4e-14 Score=123.59 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=109.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
++||||+|.|.+|+.++..+.+.+++++++++++..+....+. .. +.| +..+. .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~----A~------------~~G---------i~~~~-~ 54 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR----AR------------ELG---------VKTSA-E 54 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH----HH------------HCC---------CCEEE-C
Confidence 4799999999999999888887889999999987432111110 00 111 11111 1
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccC--CCCeEEcCCccchhhh
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLA 160 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~--~~~~V~~p~C~~ta~~ 160 (265)
+.+++ +...++|+||+|||+..+.+++..++++|+ +++.-.+....|++++++|.+++.. +.++|++|+|.++.+.
T Consensus 55 ~~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~ 132 (285)
T TIGR03215 55 GVDGL-LANPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV 132 (285)
T ss_pred CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence 22222 112468999999999999999999999996 3444333225788999999776653 4689999999999999
Q ss_pred hHHHHHHHhcCeeEEEEEEEeeccc
Q 024629 161 PLAKVIHDKFGIVEGLMTTVHSITA 185 (265)
Q Consensus 161 l~L~pL~~~~~i~~~~~~~~~~~sg 185 (265)
.+|+++++...++ .+.++++.|+
T Consensus 133 ~al~r~~d~~~~~--iv~ti~s~S~ 155 (285)
T TIGR03215 133 AAISRVAPVHYAE--IVASIASRSA 155 (285)
T ss_pred HHHHHhhccccEE--EEEEEEeecc
Confidence 9999999876552 3477898885
No 46
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.35 E-value=1.3e-12 Score=107.69 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=73.7
Q ss_pred HHHHHHh-cCeeEEEEEEEeeccccccc------------cCCCCCccccCccccccccccccCC----hhhhHh-----
Q 024629 163 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSSTG----AAKAVG----- 220 (265)
Q Consensus 163 L~pL~~~-~~i~~~~~~~~~~~sg~~~~------------~d~~~~~~~~~g~~~~~n~~p~~~~----~~~~~~----- 220 (265)
|+||+++ ++++++.+++++++||+++. ..+.......+..++++|++|+..+ +.++..
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899997 89999999999999998653 1111112334567899999999843 322222
Q ss_pred -----hhcccCCCceeEEEEEeeecceEEEEEEEEeC-CCCCHHHHHHHh
Q 024629 221 -----KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLE-KDASYDEIKAAI 264 (265)
Q Consensus 221 -----~~~~e~~~~v~~~~~~vP~~~G~~~~~~~~l~-~~~~~~~v~~~~ 264 (265)
+++.. ...++++|+|||++|||++++|++++ ++.+.++++++|
T Consensus 81 ~~~~~~~l~~-~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~ 129 (184)
T PF02774_consen 81 IAETRKILGF-PPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAF 129 (184)
T ss_dssp HHHHHHHCTE-TTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHH
T ss_pred hccccceeec-cccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHH
Confidence 12221 12789999999999999999999995 777888887765
No 47
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.97 E-value=4.3e-09 Score=89.76 Aligned_cols=210 Identities=19% Similarity=0.195 Sum_probs=116.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||+|+|+ |+||+++++++.+.|+++|++..++..+...- +..+.+. + + +...+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g-------~d~ge~~--------g--~--~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLG-------SDAGELA--------G--L--GLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccc-------cchhhhc--------c--c--cccCceee--
Confidence 589999999 99999999999999999999999886432100 0001110 1 0 00112332
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE-cCCCCCCceEEeeeCcccccCCCCeEEcCCcc--chh
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNENEYKPELNIVSNASCT--TNC 158 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi-S~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~--~ta 158 (265)
+|+... ..++|+++|-|-+..+.+.++.+++.|.+.|+- ++++++.-..+ .+..+ +..+|-.||-. ++.
T Consensus 61 ~~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l----~~~a~-~v~vv~a~NfSiGvnl 132 (266)
T COG0289 61 DDLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKL----REAAE-KVPVVIAPNFSLGVNL 132 (266)
T ss_pred cchhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHH----HHHHh-hCCEEEeccchHHHHH
Confidence 232222 367999999999999999999999999653433 44543210000 01111 24567667655 222
Q ss_pred hhhHHHHHHHh---cCeeEEEEEEEeeccccccccCCCCCccccCccccccccccccCChhhhHhh--hc-ccCCCceeE
Q 024629 159 LAPLAKVIHDK---FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGK--VL-PALNGKLTG 232 (265)
Q Consensus 159 ~~l~L~pL~~~---~~i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~~p~~~~~~~~~~~--~~-~e~~~~v~~ 232 (265)
+--.+.-..+. |.|+ .+.+.|. ...|.||++....+..++...-..... ..++.| +. +.-++.+-+
T Consensus 133 l~~l~~~aak~l~~~DiE--IiE~HHr-----~K~DAPSGTAl~lae~ia~~~~~~~~~-~~v~~r~G~~g~r~~~~Igi 204 (266)
T COG0289 133 LFKLAEQAAKVLDDYDIE--IIEAHHR-----HKKDAPSGTALKLAEAIAEARGQDLKD-EAVYGREGATGARKEGEIGI 204 (266)
T ss_pred HHHHHHHHHHhcCCCCEE--ehhhhcc-----cCCCCCcHHHHHHHHHHHHhhcccccc-ceeecccCCcCCCCCCCcee
Confidence 22223333333 3343 2245555 368999886655554444322100000 000001 11 112235788
Q ss_pred EEEEeeecceEEEEEEE
Q 024629 233 MAFRVPTVDVSVVDLTV 249 (265)
Q Consensus 233 ~~~~vP~~~G~~~~~~~ 249 (265)
+++|.|-.-|+-..++.
T Consensus 205 ~svR~G~ivG~H~V~F~ 221 (266)
T COG0289 205 HSVRGGDIVGEHEVIFA 221 (266)
T ss_pred EEeecCCcceeEEEEEe
Confidence 99999988888766654
No 48
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.95 E-value=2e-09 Score=82.63 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=71.2
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
|++|+|+ |++|..+++.|.++|+++++++.++..+ ++... ..++... . . .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~------~~~~~~~--------~---------~-~~~-- 54 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS------EAGPHLK--------G---------E-VVL-- 54 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH------HHCcccc--------c---------c-ccc--
Confidence 6899998 9999999999999999999999664311 22111 1111110 0 0 001
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHH---HHHhCCCcEEEE--cCC---CCCCceEEeeeCccccc
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAA---AHLKGGAKKVII--SAP---SKDAPMFVVGVNENEYK 143 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~---~~~~~g~~~vvi--S~~---~~~~~~~v~gvn~~~i~ 143 (265)
+.+..+|...++|+||.|+|...+.+.+. ..++.|+ +++ |+. .++.+..++++|+++++
T Consensus 55 ~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 55 ELEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred ccccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 11111233357999999999998888544 3346786 555 544 34577888899987664
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.84 E-value=8.8e-09 Score=91.39 Aligned_cols=90 Identities=27% Similarity=0.368 Sum_probs=66.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+++||||+|+|.+|+.+++.+.++|++||+++.++.. .+... . + + .++.
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~-~~~~~--------------~------~--~-------~v~~ 50 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG-AETLD--------------T------E--T-------PVYA 50 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc-HHHHh--------------h------c--C-------Cccc
Confidence 78899999999999999999999999999999998852 11110 0 0 0 1111
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEc
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS 124 (265)
..|.+++ ..++|+|+.|+|+..+.+.+..++++|+ .+|.|
T Consensus 51 ~~d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~-NVV~s 90 (324)
T TIGR01921 51 VADDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFA-NTVDS 90 (324)
T ss_pred cCCHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCC-CEEEC
Confidence 1222222 2579999999999999999999999996 34434
No 50
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.77 E-value=9.6e-08 Score=82.87 Aligned_cols=198 Identities=20% Similarity=0.264 Sum_probs=111.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||+|+|+ |++|+.+++.+.++|+++++++.++..+... .. . . . .+..+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~--------~~-~---------~----~-----~i~~~-- 51 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV--------GQ-G---------A----L-----GVAIT-- 51 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--------cc-C---------C----C-----Ccccc--
Confidence 479999999 9999999999999999999999987422100 00 0 0 0 01121
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE--cCCCCCCceEEeeeCcccccCCCCeEEcCCcc--ch
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNENEYKPELNIVSNASCT--TN 157 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi--S~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~--~t 157 (265)
.|.+++ + .++|+|+++|++....+.+..++++|+. +++ ++.+.+. .-.+.. ..++..++-.|++. .+
T Consensus 52 ~dl~~l-l--~~~DvVid~t~p~~~~~~~~~al~~G~~-vvigttG~s~~~---~~~l~~--aa~~~~v~~s~n~s~g~~ 122 (257)
T PRK00048 52 DDLEAV-L--ADADVLIDFTTPEATLENLEFALEHGKP-LVIGTTGFTEEQ---LAELEE--AAKKIPVVIAPNFSIGVN 122 (257)
T ss_pred CCHHHh-c--cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEECCCCCHHH---HHHHHH--HhcCCCEEEECcchHHHH
Confidence 344444 1 3689999999999999999999999964 555 2222110 000111 11235677777766 33
Q ss_pred hhhhHHHHHHHhcC---eeEEEEEEEeeccccccccCCCCCccccCcccccccc---c--cccCChhhhHhhhcccCCCc
Q 024629 158 CLAPLAKVIHDKFG---IVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNI---I--PSSTGAAKAVGKVLPALNGK 229 (265)
Q Consensus 158 a~~l~L~pL~~~~~---i~~~~~~~~~~~sg~~~~~d~~~~~~~~~g~~~~~n~---~--p~~~~~~~~~~~~~~e~~~~ 229 (265)
.+...++-+.+.++ ++ .+.+.|. ...|.||++....++.++.+. + +...+ + ....-+...+.
T Consensus 123 ~~~~l~~~aa~~l~~~d~e--i~E~HH~-----~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~~~~ 192 (257)
T PRK00048 123 LLMKLAEKAAKYLGDYDIE--IIEAHHR-----HKVDAPSGTALKLAEAIAEARGRDLKEVAVYG--R-EGATGARVKGE 192 (257)
T ss_pred HHHHHHHHHHHhcCCCCEE--EEEccCC-----CCCCCCCHHHHHHHHHHHHhhcccccccceec--c-CCccCCcCCCC
Confidence 34444444444442 33 2245555 367888876444433332211 0 00000 0 00000111235
Q ss_pred eeEEEEEeeecceEEEEEE
Q 024629 230 LTGMAFRVPTVDVSVVDLT 248 (265)
Q Consensus 230 v~~~~~~vP~~~G~~~~~~ 248 (265)
+.++++|.|-..|.-..++
T Consensus 193 i~i~s~R~g~~~g~h~v~f 211 (257)
T PRK00048 193 IGIHSVRGGDIVGEHEVIF 211 (257)
T ss_pred ccEEEEEcCCceEEEEEEE
Confidence 7788999998888754443
No 51
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.74 E-value=4.4e-08 Score=85.36 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=64.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
|+||||+|+|.+|+.+++.+.++|+++++++..+....+... .. .+ ..+.++ .
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--------------~~----~~-------~~~~~~--~ 53 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--------------RA----LG-------EAVRVV--S 53 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--------------hh----hc-------cCCeee--C
Confidence 369999999999999999999999999999986532221110 00 00 012233 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
|.+++ ..++|+|++|+|+..+.+++..++++|+. +++
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi 90 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAV 90 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 44444 25689999999999999999999999964 444
No 52
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.62 E-value=7.2e-08 Score=73.40 Aligned_cols=90 Identities=30% Similarity=0.444 Sum_probs=65.4
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
+||||+|+|.+|+..++.+.++ |+++++++.++... ..... ....+ ++.+ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~--~~~~~---------------~~~~~---------~~~~--~ 52 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPE--RAEAF---------------AEKYG---------IPVY--T 52 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHH--HHHHH---------------HHHTT---------SEEE--S
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHH--HHHHH---------------HHHhc---------ccch--h
Confidence 5899999999999999988877 89999999998422 11100 00011 1232 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
|.+++ +...++|+|+.|||...+.+.+..++++|. ++++
T Consensus 53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEE
T ss_pred HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEE
Confidence 44554 333579999999999999999999999996 5655
No 53
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.61 E-value=1.2e-07 Score=82.88 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccCCCh-hhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~~~~~~~-~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
|+++||||+|+|++|+.+++.|.+ .++++++++.++..+. +..+ ..+ + . ...
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a------~~~------------g------~--~~~ 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFI------WGL------------R------R--PPP 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHH------Hhc------------C------C--Ccc
Confidence 567999999999999999999987 4899999999874221 1111 000 0 0 011
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+ .+++++ ..++|+|++|+|+..+.++...++++|+ .+++
T Consensus 58 ~--~~~eel---l~~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 58 V--VPLDQL---ATHADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred c--CCHHHH---hcCCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 1 244555 2468999999999999999999999995 3443
No 54
>PRK11579 putative oxidoreductase; Provisional
Probab=98.61 E-value=1.6e-07 Score=84.91 Aligned_cols=91 Identities=27% Similarity=0.467 Sum_probs=66.4
Q ss_pred CC-ccEEEEEccChhHHH-HHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~-l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
|+ ++||||+|+|.+|+. .++.+...|++++++++++. .+..+ . .+. + ..+
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~--~~~~~------~---~~~--------~---------~~~ 52 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD--ATKVK------A---DWP--------T---------VTV 52 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC--HHHHH------h---hCC--------C---------Cce
Confidence 64 589999999999985 67888888999999999874 22211 0 000 0 112
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+ .|.+++ +...++|+|+.|||+..+.+.+..++++| |+|++
T Consensus 53 ~--~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~ 93 (346)
T PRK11579 53 V--SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVV 93 (346)
T ss_pred e--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEE
Confidence 2 345544 23357999999999999999999999999 56766
No 55
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.61 E-value=1.5e-08 Score=78.12 Aligned_cols=92 Identities=29% Similarity=0.367 Sum_probs=61.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCCh---hhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITT---DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~---~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
|||+|+|+ |++|+.+++.+.++|+++|+++.++..+. +.+. .+. +. ....+.++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g----------~~~-~~-----------~~~~~~v~ 58 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVG----------ELA-GI-----------GPLGVPVT 58 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCH----------HHC-TS-----------ST-SSBEB
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhh----------hhh-Cc-----------CCcccccc
Confidence 59999999 99999999999999999999999986421 1111 000 00 00112232
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.|.+++ ...+|+++|+|-+....+.++.+++.|+. +|+
T Consensus 59 --~~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~-~Vi 96 (124)
T PF01113_consen 59 --DDLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVP-LVI 96 (124)
T ss_dssp --S-HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-E-EEE
T ss_pred --hhHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCC-EEE
Confidence 344444 24599999999888888999999999964 444
No 56
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.59 E-value=1.4e-07 Score=82.34 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=64.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
+||+|+|+ |++|+.+++.+.++|+++|+++.++..... .. .+ .+.+. + . ....+.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~-~~----~~--~~~~~--------~--~--~~~gv~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL-QG----TD--AGELA--------G--I--GKVGVPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-cC----CC--HHHhc--------C--c--CcCCceee--C
Confidence 79999996 999999999999999999999998532210 00 00 00000 0 0 00012232 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
|++++ ..++|+|++||++..+.+.+..++++|+. +|+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 45554 24689999999999999999999999964 555
No 57
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.42 E-value=7.2e-07 Score=76.80 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=65.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcC--CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~--p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
..||||+|+|.+|+.+++.|... +.++++++.++.. +.... +. + . .+++
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~----------~~--------~-------~-~~~~- 52 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPA----------LA--------G-------R-VALL- 52 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHH----------hh--------c-------c-Cccc-
Confidence 48999999999999999998764 4599999988742 11100 00 0 0 1122
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEc
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS 124 (265)
.|++++ ....+|+|++|.++...+++.+.++++|+..+++|
T Consensus 53 -~~l~~l--l~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 53 -DGLPGL--LAWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred -CCHHHH--hhcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 345553 12569999999999999999999999998767665
No 58
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.39 E-value=8.4e-07 Score=72.76 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=90.3
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 1 MG-KVKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
|. +.||+|+|.|.+|..|+-.+++| .++|..++.......+.+++.. ..|-.-+..|.. -.
T Consensus 1 m~sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraa----------------rlgv~tt~egv~-~l 63 (310)
T COG4569 1 MSSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAA----------------RLGVATTHEGVI-GL 63 (310)
T ss_pred CCCcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHH----------------hcCCcchhhHHH-HH
Confidence 53 78999999999999998888887 5688776655421111111100 001000000000 00
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccCCCCeEEcCCccchh
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNC 158 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~~ta 158 (265)
+ .-|+ ..+.|+||++|..+.+.+.++++.++|++-+.++ +..-.|-++|-+|.++-. ++.-|+.-.|..++
T Consensus 64 l--~~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paaigp~vvp~~n~~eh~-~a~nvnmvtcggqa 134 (310)
T COG4569 64 L--NMPE-----FADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAAIGPYVVPVVNLEEHV-DALNVNMVTCGGQA 134 (310)
T ss_pred H--hCCC-----CCCcceEEeccccchhhcchHhHHhcCCceeecc-hhccCCeeccccchHHhc-CCCCcceEeecCcc
Confidence 0 1122 2578899999999999999999999999766663 111257788888965443 25677778888888
Q ss_pred hhhHHHHHHH
Q 024629 159 LAPLAKVIHD 168 (265)
Q Consensus 159 ~~l~L~pL~~ 168 (265)
.++.++...+
T Consensus 135 tipiv~avsr 144 (310)
T COG4569 135 TIPIVAAVSR 144 (310)
T ss_pred cchhhhhhhh
Confidence 8887776654
No 59
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.37 E-value=8.5e-07 Score=79.58 Aligned_cols=93 Identities=25% Similarity=0.309 Sum_probs=66.5
Q ss_pred CCccEEEEEccC-hhHHHHHHHHHcCCC-eEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEE
Q 024629 1 MGKVKIGINGFG-RIGRLVARVILQRDD-VELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~~~~V~IiG~G-~~G~~l~r~L~~~p~-~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~ 77 (265)
|+++||||+|+| ..++..+..+.+.++ +++++++++... .+..+ . +-+ + . .
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a------~------------~~~--~-----~-~ 54 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFA------E------------EFG--I-----A-K 54 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHH------H------------HcC--C-----C-c
Confidence 778999999996 666779999999887 799999998532 11111 0 001 0 0 1
Q ss_pred EEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 78 ~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+ .|.+++ +...++|+|+.|||+..+.+.+.+++++| |+|++
T Consensus 55 ~~--~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aG-khVl~ 96 (342)
T COG0673 55 AY--TDLEEL-LADPDIDAVYIATPNALHAELALAALEAG-KHVLC 96 (342)
T ss_pred cc--CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcC-CEEEE
Confidence 22 244444 33356899999999999999999999999 56776
No 60
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.36 E-value=1.2e-06 Score=76.31 Aligned_cols=91 Identities=26% Similarity=0.374 Sum_probs=63.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||||+|+|.+|+.+++.+.+.+ +++++++.++..+ ....+. . ..+ ...+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a-----------~----~~~---------~~~~-- 52 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLE--KAENLA-----------S----KTG---------AKAC-- 52 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHH-----------H----hcC---------CeeE--
Confidence 369999999999999999998764 7999999987422 111000 0 001 1122
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS 124 (265)
.+.+++. .++|+|++|+|+....++.+.++++|+..+++|
T Consensus 53 ~~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 53 LSIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred CCHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEc
Confidence 2445541 479999999999999999999999996433333
No 61
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.32 E-value=1.2e-06 Score=81.38 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=62.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLF 71 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p---------~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~ 71 (265)
|+++||||+|+|.+|+.++++|.+|+ ++++++|.++...- .. .+ . +
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~--~~----------~~---------~--~-- 55 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK--DR----------GV---------D--L-- 55 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh--cc----------CC---------C--C--
Confidence 77899999999999999999997764 68999999874211 00 00 0 0
Q ss_pred CCEEEEEEecCCCCCCCccccCccEEEEecCC-cccHHHHHHHHhCCCcEEEE
Q 024629 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 72 ~g~~i~~~~~~d~~~~~~~~~~~DvV~~atp~-~~~~~~~~~~~~~g~~~vvi 123 (265)
.+ ...+ .|++++ +.+.++|+|++|++. ..+.+++.+++++|+ +||.
T Consensus 56 ~~--~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVt 102 (426)
T PRK06349 56 PG--ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVT 102 (426)
T ss_pred cc--ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEE
Confidence 00 1121 244444 223578999999876 456788889999994 4554
No 62
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.32 E-value=1.7e-06 Score=72.11 Aligned_cols=90 Identities=27% Similarity=0.400 Sum_probs=65.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
++|||+|+|.+|+.+++++.+.+ ++|++++.|+..+ +...+. . . + .++. . .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~---~--------------~--~--~~~~--~---s 52 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELE---A--------------S--V--GRRC--V---S 52 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHH---h--------------h--c--CCCc--c---c
Confidence 47999999999999999999763 6999999998532 111010 0 0 0 1111 1 2
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEc
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS 124 (265)
+.+++ ..++|++++|.++...++++++++++|+..+|+|
T Consensus 53 ~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~S 91 (255)
T COG1712 53 DIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMS 91 (255)
T ss_pred cHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEe
Confidence 34443 2679999999999999999999999998877764
No 63
>PRK10206 putative oxidoreductase; Provisional
Probab=98.26 E-value=2e-06 Score=77.80 Aligned_cols=91 Identities=15% Similarity=0.259 Sum_probs=62.5
Q ss_pred ccEEEEEccChhHH-HHHHHHHc-CCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGR-LVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~-~l~r~L~~-~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+||||+|+|.+++ ..++.+.. .+++++++++++..+....+ . .| ++ +.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~------~---~~---------------~~--~~~~- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------P---IY---------------SH--IHFT- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH------H---hc---------------CC--Cccc-
Confidence 48999999998775 45676654 47899999999843211111 0 01 00 1122
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.|.+++ +...++|+|+.|||+..+.+++.+++++| |+|++
T Consensus 54 -~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~ 93 (344)
T PRK10206 54 -SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLV 93 (344)
T ss_pred -CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEE
Confidence 344444 33357999999999999999999999999 56777
No 64
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.22 E-value=2.9e-06 Score=76.64 Aligned_cols=103 Identities=23% Similarity=0.325 Sum_probs=60.4
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccCCCh-----hhhhhheeeecccCcccccceeeeCCc
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITT-----DYMTYMFKYDSVHGQWKHHELKVKDDK 67 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p---------~~el~~i~~~~~~~-----~~~a~l~~~~~~~~~~~~~~v~~~~~~ 67 (265)
|++||+|+|+|.+|+.+++.|.+++ ++++++++++.... -....+..+.. ..+
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~------------~~~- 67 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKE------------ETG- 67 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHh------------ccC-
Confidence 2599999999999999999998764 79999999863211 00000000000 000
Q ss_pred eEE-ECCEEEEEEecCCCCCCCccccCccEEEEecCCccc-----HHHHHHHHhCCCcEEEEc
Q 024629 68 TLL-FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTD-----KDKAAAHLKGGAKKVIIS 124 (265)
Q Consensus 68 ~l~-~~g~~i~~~~~~d~~~~~~~~~~~DvV~~atp~~~~-----~~~~~~~~~~g~~~vviS 124 (265)
.+. +.+ .....|++++ +...++|+|++|||+..+ .+++..++++|+ .|++
T Consensus 68 ~~~~~~~----~~~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVt 123 (341)
T PRK06270 68 KLADYPE----GGGEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVT 123 (341)
T ss_pred CcccCcc----ccccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEc
Confidence 000 000 0000133333 223568999999997543 678899999996 4443
No 65
>PLN02775 Probable dihydrodipicolinate reductase
Probab=98.06 E-value=1.6e-05 Score=69.29 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=65.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
.+||.|+|+ |++|+++++.+.+ ++++|++..++...+... + +.+.|..+.++..
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~---------------~---------~~~~g~~v~~~~~ 65 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGV---------------T---------VEVCGVEVRLVGP 65 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccc---------------c---------ceeccceeeeecC
Confidence 589999999 9999999999999 999999988864333210 0 0112223444422
Q ss_pred CCCCCCCc---cccCcc-EEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 82 RNPEEIPW---AETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~d~~~~~~---~~~~~D-vV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.|.+++ + +...+| ++||-|-+....+.++.+++.|+. +|+
T Consensus 66 ~dl~~~-l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~-~Vv 109 (286)
T PLN02775 66 SEREAV-LSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLP-FVM 109 (286)
T ss_pred ccHHHH-HHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 333332 1 012588 899999999999999999999975 444
No 66
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.75 E-value=5.5e-05 Score=67.05 Aligned_cols=110 Identities=22% Similarity=0.360 Sum_probs=67.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeC-C---ceEEECCEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-D---KTLLFGEKPVTV 78 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~-~---~~l~~~g~~i~~ 78 (265)
.+|||+||+|.+|+-++.....-|+++++++.++.-+..+.+ ||..++.-. ..+...+ . ..+ -.|+ +.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A----~~~ag~~~~-~~~e~~~~s~~a~Ai-~aGK-i~v 89 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA----YDRAGGPKI-EAVEADDASKMADAI-EAGK-IAV 89 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH----HHHhcCCcc-cccccchhhHHHHHH-hcCc-EEE
Confidence 589999999999999999999889999999999875544433 232221110 0000000 0 000 0121 223
Q ss_pred EecCCCCCCCccccCccEEEEecCCc-ccHHHHHHHHhCCCcEEEE
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~-~~~~~~~~~~~~g~~~vvi 123 (265)
. +|.+.+ .....+|+|+++|++- +..+....++.+| |++|.
T Consensus 90 T--~D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~-KHlVM 131 (438)
T COG4091 90 T--DDAELI-IANDLIDVIIDATGVPEVGAKIALEAILHG-KHLVM 131 (438)
T ss_pred e--cchhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcC-CeEEE
Confidence 2 344444 3446789999999974 4555666667777 55554
No 67
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.73 E-value=4.1e-05 Score=59.14 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=51.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh-hhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~-~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
.+||+|||+|++|..|.++|.+.. ++++++.+++... +..+.. + ++ ..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~----------------------~--~~--~~~--- 59 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF----------------------I--GA--GAI--- 59 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--------------------------TT--------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc----------------------c--cc--ccc---
Confidence 589999999999999999999774 7899998875322 211100 0 11 112
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG 116 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~ 116 (265)
.+++++ ..++|++|.|+|-..-.+.++.+.+.
T Consensus 60 ~~~~~~---~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 60 LDLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred cccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence 133333 26799999999998888888877765
No 68
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.68 E-value=4.8e-05 Score=68.56 Aligned_cols=102 Identities=29% Similarity=0.334 Sum_probs=59.2
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccCCChhhhhhheeeeccc---CcccccceeeeCCceE
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVH---GQWKHHELKVKDDKTL 69 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p---------~~el~~i~~~~~~~~~~a~l~~~~~~~---~~~~~~~v~~~~~~~l 69 (265)
|++||+|+|+|.+|+.++++|.++. ++++++|+++.... |+... .++. .. ....+ .+
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~--------~~~~Gid~~~l~-~~-~~~~~-~~ 69 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTI--------WLPEDIDLREAK-EV-KENFG-KL 69 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccc--------cCCCCCChHHHH-Hh-hhccC-ch
Confidence 2599999999999999999987731 48899998864221 11000 0000 00 00000 00
Q ss_pred EECCEE--EEEEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 70 LFGEKP--VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 70 ~~~g~~--i~~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
..-. ... ...+++++ +...++|+|++|++.....++..++++.|+
T Consensus 70 --~~~~~~~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~ 116 (336)
T PRK08374 70 --SNWGNDYEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK 116 (336)
T ss_pred --hhccccccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC
Confidence 0000 000 00122232 223579999999998888899999999996
No 69
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.68 E-value=4.4e-05 Score=57.97 Aligned_cols=81 Identities=25% Similarity=0.329 Sum_probs=50.6
Q ss_pred ccChhHHHHHHHHHcCC---CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCCCCC
Q 024629 10 GFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEE 86 (265)
Q Consensus 10 G~G~~G~~l~r~L~~~p---~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d~~~ 86 (265)
|+|.+|+.++++|.+++ ++++++|.++. .... .. +. .. ..+ .... .+.++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~--------~~---~~-~~---~~~---------~~~~--~~~~~ 53 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLIS--------KD---WA-AS---FPD---------EAFT--TDLEE 53 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEE--------TT---HH-HH---HTH---------SCEE--SSHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhh--------hh---hh-hh---ccc---------cccc--CCHHH
Confidence 78999999999999886 79999999985 1100 00 00 00 000 0011 23333
Q ss_pred CCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 87 IPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 87 ~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
+ ....+.|+||||++.....++.+.++++|+
T Consensus 54 ~-~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~ 84 (117)
T PF03447_consen 54 L-IDDPDIDVVVECTSSEAVAEYYEKALERGK 84 (117)
T ss_dssp H-HTHTT-SEEEE-SSCHHHHHHHHHHHHTTC
T ss_pred H-hcCcCCCEEEECCCchHHHHHHHHHHHCCC
Confidence 2 111268999999999999999999999997
No 70
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.68 E-value=8.6e-05 Score=66.98 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=29.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p---------~~el~~i~~~~ 37 (265)
+++|+|+|+|.+|+.++++|.++. ++++++|.++.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~ 45 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRN 45 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecc
Confidence 599999999999999999997542 57899998763
No 71
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.68 E-value=9.8e-05 Score=66.60 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=59.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
++||||+|+ ++|+..++.+.+.| +++|++|+|+..+ .+.++. +| | +..+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~---------~~---------g---------i~~y- 53 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAH---------RL---------G---------VPLY- 53 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH---------Hh---------C---------CCcc-
Confidence 589999999 56999999999888 8999999998422 222210 00 1 1122
Q ss_pred cCCCCCCCccccCccEEEE--ecCCcccHHHHHHHHhCCCcEEEE
Q 024629 81 VRNPEEIPWAETGAEYVVE--STGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~--atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.|.+++. ...++|+|.. ++|+..+.+.+.+++++| |+|++
T Consensus 54 -~~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~ 95 (343)
T TIGR01761 54 -CEVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQ 95 (343)
T ss_pred -CCHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEE
Confidence 3455541 1234455554 346788999999999999 56766
No 72
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.66 E-value=0.00011 Score=65.97 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=29.8
Q ss_pred cEEEEEccChhHHHHHHHHHcC-------CCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQR-------DDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~-------p~~el~~i~~~~ 37 (265)
+||+|+|+|.+|+.++++|.++ .++++++|.++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~ 41 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK 41 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence 4899999999999999999874 468999998864
No 73
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00024 Score=63.33 Aligned_cols=99 Identities=24% Similarity=0.400 Sum_probs=61.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccCCChhhhhhheeeeccc-CcccccceeeeCCceEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPFITTDYMTYMFKYDSVH-GQWKHHELKVKDDKTLL 70 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p---------~~el~~i~~~~~~~~~~a~l~~~~~~~-~~~~~~~v~~~~~~~l~ 70 (265)
|+++||+|+|+|.+|+.++|+|.++. ++++++|.+++..... .+|-.. ..|. ..+
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-----~~~~~~~~~~~------~~~---- 65 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-----DLDLLNAEVWT------TDG---- 65 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-----cccccchhhhe------ecc----
Confidence 78899999999999999999998752 5788888887422210 000000 0000 000
Q ss_pred ECCEEEEEEecCCCCCCCccccCccEEEEecCCc--ccH--HHHHHHHhCCCcEEEEcCC
Q 024629 71 FGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF--TDK--DKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 71 ~~g~~i~~~~~~d~~~~~~~~~~~DvV~~atp~~--~~~--~~~~~~~~~g~~~vviS~~ 126 (265)
.. . .+ .++.+ ..+.|+|+++++.. .+. ++..++++.|. .|+++.
T Consensus 66 ------~~-~-~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN 113 (333)
T COG0460 66 ------AL-S-LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN 113 (333)
T ss_pred ------cc-c-cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence 00 0 01 12212 36789999999872 344 67888999996 667665
No 74
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=97.57 E-value=0.00032 Score=61.04 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=60.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE-eccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV-NDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i-~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
+||.|+|+ |+||+++++++.+ ++++|++. .+.....+.. +. + .|..+++..+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~---------------~~--------~--~g~~v~v~~~ 54 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENE---------------AE--------V--AGKEILLHGP 54 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccch---------------hh--------h--cccceeeecc
Confidence 58999999 9999999999888 89999986 4432111111 00 1 1112334211
Q ss_pred ----CCCCCCCccccCcc-EEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 82 ----RNPEEIPWAETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ----~d~~~~~~~~~~~D-vV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+++++ + ...+| +++|-|-+....+.+..+.+.|+. .|+
T Consensus 55 ~~~~~~l~~~-~-~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~-~Vi 98 (275)
T TIGR02130 55 SEREARIGEV-F-AKYPELICIDYTHPSAVNDNAAFYGKHGIP-FVM 98 (275)
T ss_pred ccccccHHHH-H-hhcCCEEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 233333 1 12378 999999999999999999999975 444
No 75
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.53 E-value=0.00027 Score=59.52 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=61.5
Q ss_pred ccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~-~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
..||+|+|+|.+|+.+++.+. ..++++++++.|.. .+.. +. .+ .| +.+...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d--~~~~---------------~~-------~i--~g--~~v~~~ 135 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD--PEKI---------------GT-------KI--GG--IPVYHI 135 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC--hhhc---------------CC-------Ee--CC--eEEcCH
Confidence 579999999999999998643 34679999998863 2110 00 01 11 112111
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+.+++ ....++|+|+.|+|.....+....+.++|++.++.
T Consensus 136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~ 176 (213)
T PRK05472 136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILN 176 (213)
T ss_pred HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence 233332 12346999999999998888889999999876655
No 76
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.46 E-value=0.00028 Score=71.74 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=63.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeE------------EEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTL 69 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~e------------l~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l 69 (265)
|.||+|+|+|++|+.+++.|.++|+++ ++.|+|+... .+.++ ..++ + .
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la------~~~~-----------~--~ 629 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV------EGIE-----------N--A 629 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH------HhcC-----------C--C
Confidence 579999999999999999999998877 7888886421 22111 0000 0 0
Q ss_pred EECCEEEEEEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 70 LFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 70 ~~~g~~i~~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+.+.+ .-.|.+++.-...++|+|+.|+|...+.+.+..++++|+ +++.
T Consensus 630 ----~~v~l-Dv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk-Hvv~ 677 (1042)
T PLN02819 630 ----EAVQL-DVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK-HLVT 677 (1042)
T ss_pred ----ceEEe-ecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC-CEEE
Confidence 01111 012333331001469999999999999999999999996 4444
No 77
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=97.42 E-value=0.0008 Score=54.51 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=29.4
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|.++.+-|+|+ |..|+.+++.+++.|.|.=|.+..+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R 52 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR 52 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence 56788999999 9999999999999998864444333
No 78
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.37 E-value=0.00034 Score=56.96 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=63.2
Q ss_pred ccEEEEEccChhHHHHHHHHH-cCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~-~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
+.+|.|+|+|.+|+.++.--. .+.+++++++-|.. ...+ |.. . .+ +.+..-
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~--~~~V----------G~~------------~--~~--v~V~~~ 135 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVD--PDKV----------GTK------------I--GD--VPVYDL 135 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCC--HHHh----------Ccc------------c--CC--eeeech
Confidence 579999999999999986443 35679999998763 2211 111 1 11 334332
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEE
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 122 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vv 122 (265)
++.++. .+..++|+++.|.|...+.+.+..+.++|+|.++
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGIL 175 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEE
Confidence 344433 2234899999999999999999999999998665
No 79
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.33 E-value=0.00045 Score=59.15 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=49.6
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEE
Q 024629 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~l~r~L~~~p--~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~ 77 (265)
|| .+||+|+|+|.+|..+++.|.++. .++.+.+.++. +.+....+. . ..+ +.
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~-~~~~~~~~~-----------~----~~~---------~~ 55 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS-NVEKLDQLQ-----------A----RYN---------VS 55 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC-CHHHHHHHH-----------H----HcC---------cE
Confidence 54 789999999999999999887663 34423333332 111111000 0 001 11
Q ss_pred EEecCCCCCCCccccCccEEEEecCCcccHHHHHHHH
Q 024629 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (265)
Q Consensus 78 ~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~ 114 (265)
.. .|.+++ ..++|+||.|+|.....+.++.+.
T Consensus 56 ~~--~~~~~~---~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 56 TT--TDWKQH---VTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred Ee--CChHHH---HhcCCEEEEecCHHHHHHHHHHHH
Confidence 21 233332 257899999999988877776654
No 80
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.29 E-value=0.00088 Score=59.56 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=67.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEeccCCCh-hhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p--~~el~~i~~~~~~~-~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
.+|.||+|+|.+++.+++.|..-| +.++++|++++.+- ...| ..| + + . +.+++
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fA------q~~------------~--~--~--~~k~y 61 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFA------QRH------------N--I--P--NPKAY 61 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHH------Hhc------------C--C--C--CCccc
Confidence 589999999999999999999888 89999999995331 1111 000 0 1 0 01222
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+.|++ .++..+|+|...+|+-.+.+++..++..| |+|.+
T Consensus 62 --~syEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~-K~VL~ 101 (351)
T KOG2741|consen 62 --GSYEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKG-KHVLC 101 (351)
T ss_pred --cCHHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcC-CcEEe
Confidence 234554 23467899999999999999999999998 56666
No 81
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0022 Score=58.59 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=72.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC-CChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF-ITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~-~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
|+||-|+|+|.+|+.+++.|..+.+.++.. ++++ ...+.+. +...++ + +.. .+..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~i-AdRs~~~~~~i~-----~~~~~~-------------v----~~~-~vD~ 56 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTI-ADRSKEKCARIA-----ELIGGK-------------V----EAL-QVDA 56 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEE-EeCCHHHHHHHH-----hhcccc-------------c----eeE-Eecc
Confidence 469999999999999999999887766554 4453 2233322 111011 1 011 1111
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCcccccCCCCeEEcCCcc
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCT 155 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~~~~~~V~~p~C~ 155 (265)
.|.+.+.-...+.|+||.|.|.+......+.+++.|..-+++|-..+. ...++ +..+ ++.+...++|-
T Consensus 57 ~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~----~~~~~-~~a~-~Agit~v~~~G 124 (389)
T COG1748 57 ADVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP----PWKLD-EEAK-KAGITAVLGCG 124 (389)
T ss_pred cChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch----hhhhh-HHHH-HcCeEEEcccC
Confidence 222111001256699999999999999999999999854444433211 12222 2233 36777777776
No 82
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.24 E-value=0.00059 Score=49.98 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=61.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
+.||.|+|+|..|+.++.......+++++++.+.. ++.. |+.+ .| ++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~--~~~~----------------------G~~i--~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD--PEKI----------------------GKEI--GG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC--TTTT----------------------TSEE--TT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC--CCcc----------------------CcEE--CC--EEeec--
Confidence 46999999999999988766666679988888763 2110 1111 23 45552
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+.+++.-.. ++|+.+.|.|....++.+.+++++|+|.++.
T Consensus 53 ~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 53 SMDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp SHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred cHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 233331011 3899999999999999999999999987775
No 83
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.19 E-value=0.00058 Score=49.63 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=52.3
Q ss_pred EEEEEccChhHHHHHHHHHcCC--CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 5 KIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p--~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
||||+|+|.+|..+++.|.++. ..++..+++++ .+...++. . +.+ ..++. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~------------~~~---------~~~~~-~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---K------------EYG---------VQATA-D 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---H------------HCT---------TEEES-E
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---H------------hhc---------ccccc-C
Confidence 7999999999999999998874 25666565653 33222111 0 001 01111 0
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHH--HhCCCcEEEEc
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAH--LKGGAKKVIIS 124 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~--~~~g~~~vviS 124 (265)
+..++ ...+|+||.|.++....+....+ ...+. .+||
T Consensus 54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~--~vis 92 (96)
T PF03807_consen 54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGK--LVIS 92 (96)
T ss_dssp EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEE
T ss_pred ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCC--EEEE
Confidence 12222 24689999999999888877766 44564 5553
No 84
>PLN02700 homoserine dehydrogenase family protein
Probab=97.14 E-value=0.00057 Score=62.19 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=31.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPF 37 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p--------~~el~~i~~~~ 37 (265)
|++++|+|+|+|.+|+.|+++|.++. ++++++|++..
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~ 45 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSK 45 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCC
Confidence 88899999999999999999987542 37788987753
No 85
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.02 E-value=0.0012 Score=53.59 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=54.1
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe--cC
Q 024629 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG--VR 82 (265)
Q Consensus 6 V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~--~~ 82 (265)
|.|.|+ |++|+.+++.|.+++ .++.+++.+....+. . . + + .++. ..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~----------~-----~------~--~-------~~~~~d~~ 49 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED----------S-----P------G--V-------EIIQGDLF 49 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH----------C-----T------T--E-------EEEESCTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc----------c-----c------c--c-------ccceeeeh
Confidence 689999 999999999999987 899998865322210 0 0 1 1 1222 12
Q ss_pred CCCCCCccccCccEEEEecCCcc-----cHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFT-----DKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~-----~~~~~~~~~~~g~~~vvi 123 (265)
|++.+.-...++|+||+|.++.. .+...+.+.+.|++++++
T Consensus 50 d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 50 DPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp CHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEE
T ss_pred hhhhhhhhhhhcchhhhhhhhhccccccccccccccccccccccee
Confidence 22211111257999999998533 233444555688887776
No 86
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.98 E-value=0.0018 Score=56.26 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=48.9
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
||+||+|+|+|.+|..+++.|.+.. ...-+.+.+++ .+....+. . ..+ +.+.
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~--~~~~~~~~-----------~----~~g---------~~~~- 53 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS--PEKRAALA-----------E----EYG---------VRAA- 53 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCC--HHHHHHHH-----------H----hcC---------Ceec-
Confidence 2479999999999999999887653 12334455553 11111000 0 001 1121
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHh
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~ 115 (265)
.+.+++ ..++|+||.|++.....+.++.+..
T Consensus 54 -~~~~~~---~~~advVil~v~~~~~~~v~~~l~~ 84 (267)
T PRK11880 54 -TDNQEA---AQEADVVVLAVKPQVMEEVLSELKG 84 (267)
T ss_pred -CChHHH---HhcCCEEEEEcCHHHHHHHHHHHHh
Confidence 223332 1468999999999877777766554
No 87
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.95 E-value=0.0032 Score=57.35 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=64.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCC---ceEE--ECCEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FGEKPV 76 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~---~~l~--~~g~~i 76 (265)
.||+|+|+ |.+|...++.+.++| .+++++++... +.+.+..+. ....|++. ...+. ..|. +.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCCc
Confidence 69999998 999999999999887 69999998543 333222211 11112211 00000 0000 011112
Q ss_pred EEEecC-CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 77 TVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 77 ~~~~~~-d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.++... ...++ ....++|+|+.+.+.....+..-.++++|. ++.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 233221 12222 112468999999999888888888899995 3444
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.78 E-value=0.00073 Score=57.29 Aligned_cols=96 Identities=23% Similarity=0.213 Sum_probs=57.5
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024629 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (265)
Q Consensus 6 V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d~ 84 (265)
|.|.|+ |..|+.+++.|.. +++++.+++....+ .... - |. ..|-.+ + .....|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~-~~~~-~---------l~------~~g~~v------v-~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSS-DRAQ-Q---------LQ------ALGAEV------V-EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHH-HHHH-H---------HH------HTTTEE------E-ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccch-hhhh-h---------hh------cccceE------e-ecccCCH
Confidence 789999 9999999999998 67999998875411 1110 0 00 112011 1 1011223
Q ss_pred CCCCccccCccEEEEecCCc------ccHHHHHHHHhCCCcEEEEcCC
Q 024629 85 EEIPWAETGAEYVVESTGVF------TDKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 85 ~~~~~~~~~~DvV~~atp~~------~~~~~~~~~~~~g~~~vviS~~ 126 (265)
+.+.-...++|.||.+++.. .....+.++.++|+|+++.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 33221236899999999943 2445567777889998887543
No 89
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.76 E-value=0.0028 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=23.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
|..+||+|+|+|.+|..+++.|.+..
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCC
Confidence 66679999999999999999998764
No 90
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.69 E-value=0.0032 Score=57.70 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=69.3
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCCCC
Q 024629 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPE 85 (265)
Q Consensus 6 V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d~~ 85 (265)
|.|+|+|++|+.+++.|.+++.++-+.+.+++ .+....+. +.. .+..+ ....+...|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~--~~~~~~~~--~~~------------~~~~~-----~~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRN--PEKAERLA--EKL------------LGDRV-----EAVQVDVNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESS--HHHHHHHH--T--------------TTTTE-----EEEE--TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECC--HHHHHHHH--hhc------------cccce-----eEEEEecCCHH
Confidence 68999999999999999999878555566663 22221111 000 00001 01111112322
Q ss_pred CCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCCCCCCceEEeeeCccccc-CCCCeEEcCCccchhhhhHHH
Q 024629 86 EIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYK-PELNIVSNASCTTNCLAPLAK 164 (265)
Q Consensus 86 ~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~~~~~~~~v~gvn~~~i~-~~~~~V~~p~C~~ta~~l~L~ 164 (265)
++.-...++|+|+.|+|.+.....++.+++.|+.-+..|.... ....++ +..+ ++..+|...|..+--.-+...
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~----~~~~l~-~~a~~~g~~~l~~~G~~PGl~~~~a~ 134 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTE----EMLALD-EEAKEAGVTALPGCGFDPGLSNLLAR 134 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHH----HHHHCH-HHHHHTTSEEE-S-BTTTBHHHHHHH
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHH----HHHHHH-HHHHhhCCEEEeCcccccchHHHHHH
Confidence 2211135789999999999888999999999983222221000 000112 2222 223455555555555555555
Q ss_pred HHHHhcC
Q 024629 165 VIHDKFG 171 (265)
Q Consensus 165 pL~~~~~ 171 (265)
-+.+.+.
T Consensus 135 ~~~~~~~ 141 (386)
T PF03435_consen 135 YAADELD 141 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5555544
No 91
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.68 E-value=0.0016 Score=52.44 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=23.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+|||++|.|.+|..+++.|.++. +++.. .++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~-~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-YEVTV-YDR 32 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-TEEEE-EES
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-CeEEe-ecc
Confidence 469999999999999999998874 67654 444
No 92
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.63 E-value=0.0041 Score=54.56 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=24.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
||+|+|+|.+|..+++.|.++. .++.++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d 30 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVS 30 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence 8999999999999999998774 6665553
No 93
>PLN02256 arogenate dehydrogenase
Probab=96.60 E-value=0.0065 Score=54.05 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=49.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|.++||+|+|+|.+|+.+++.|.+.+ .++.++.... ....+ ...| . ..+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~~--~~~~a------------------~~~g--v-------~~~- 82 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRSD--YSDIA------------------AELG--V-------SFF- 82 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECcc--HHHHH------------------HHcC--C-------eee-
Confidence 34689999999999999999998764 6777654331 11111 0001 1 111
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHH
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAH 113 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~ 113 (265)
.+.+++- ..++|+||.|+|.....+.+..+
T Consensus 83 -~~~~e~~--~~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 83 -RDPDDFC--EEHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred -CCHHHHh--hCCCCEEEEecCHHHHHHHHHhh
Confidence 2222220 13589999999998777766665
No 94
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=96.59 E-value=0.0095 Score=51.64 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=33.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
|+ ++|-|.|.|++|.+.+|.|..+|+++|++...++
T Consensus 1 m~-~~vvqyGtG~vGv~air~l~akpe~elvgawv~s 36 (350)
T COG3804 1 MS-LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS 36 (350)
T ss_pred CC-ceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence 54 8999999999999999999999999999998875
No 95
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.56 E-value=0.011 Score=44.81 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=53.5
Q ss_pred EEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 5 KIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 5 ~V~IiG~----G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
+|+|+|+ +..|..+++.|.++ ++++..|+-.... + .| ++.+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~~~-----------------------------i--~G--~~~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKGGE-----------------------------I--LG--IKCY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTCSE-----------------------------E--TT--EE-B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCceE-----------------------------E--Cc--EEee-
Confidence 7999995 78899999999985 4787777543211 0 12 1232
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+.++.+ ..+|+++.|+|.....+.++++.+.|++.+++
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 2333332 57899999999999999999999999998887
No 96
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.45 E-value=0.014 Score=47.71 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=28.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|||||+|+ |.+|.++++-...+ +.|+++|+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEeC
Confidence 58999999 99999999998887 4899999865
No 97
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.44 E-value=0.013 Score=52.12 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||.|.|+ |++|+.+++.|.++. .++.++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcC
Confidence 8999999 999999999999874 788777643
No 98
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.43 E-value=0.0073 Score=51.42 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=31.3
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
+.+||+|.|+|.+|+.+++.|.+. ++++++|+|..
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~~ 64 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDSD 64 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence 468999999999999999999877 69999999873
No 99
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.42 E-value=0.0087 Score=54.62 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=47.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
+.||+|+|. |.+|+.+.+.|.+..+.++.++ |+. +. + .
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~~-d~-------------------------~-----------~--- 42 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DPA-DP-------------------------G-----------S--- 42 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cCC-cc-------------------------c-----------c---
Confidence 689999999 9999999999986435665443 221 00 0 0
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHH
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~ 114 (265)
.++++. ..++|+||.|+|.....+.++++.
T Consensus 43 ~~~~~~---v~~aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 43 LDPATL---LQRADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred CCHHHH---hcCCCEEEEeCCHHHHHHHHHHHh
Confidence 011111 157899999999998888887765
No 100
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.42 E-value=0.011 Score=51.83 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=51.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCC---eEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~---~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~ 77 (265)
|+ +||++||+|.+|..+++.|.+... -++ .+.+++ .+....+. . +.| +.
T Consensus 1 ~~-~~IgfIG~G~MG~aia~~L~~~g~~~~~~I-~v~~r~--~~~~~~l~-----------~----~~g---------~~ 52 (272)
T PRK12491 1 MN-KQIGFIGCGNMGIAMIGGMINKNIVSPDQI-ICSDLN--VSNLKNAS-----------D----KYG---------IT 52 (272)
T ss_pred CC-CeEEEECccHHHHHHHHHHHHCCCCCCceE-EEECCC--HHHHHHHH-----------H----hcC---------cE
Confidence 55 689999999999999999987542 233 344442 22111110 0 001 11
Q ss_pred EEecCCCCCCCccccCccEEEEecCCcccHHHHHHHH---hCCCcEEEEc
Q 024629 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL---KGGAKKVIIS 124 (265)
Q Consensus 78 ~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~---~~g~~~vviS 124 (265)
.. .+..++ ..++|+||.|+++....+.++.+. +.+. +++|
T Consensus 53 ~~--~~~~e~---~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~--lvIS 95 (272)
T PRK12491 53 IT--TNNNEV---ANSADILILSIKPDLYSSVINQIKDQIKNDV--IVVT 95 (272)
T ss_pred Ee--CCcHHH---HhhCCEEEEEeChHHHHHHHHHHHHhhcCCc--EEEE
Confidence 21 233333 247899999999877766665543 3443 5663
No 101
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.38 E-value=0.0077 Score=52.76 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=49.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD---DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVT 77 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p---~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~ 77 (265)
|..+||+++|+|.+|..+++.|.++. ..++. +.+++. .+....+. ...+ +.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---------------~~~g---------~~ 54 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---------------QKYG---------VK 54 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---------------HhcC---------ce
Confidence 76679999999999999999998764 13443 344421 11111000 0001 11
Q ss_pred EEecCCCCCCCccccCccEEEEecCCcccHHHHHHHH
Q 024629 78 VFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (265)
Q Consensus 78 ~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~ 114 (265)
.. .++.+. ..++|+||.|++.....+.+..+.
T Consensus 55 ~~--~~~~e~---~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 55 GT--HNKKEL---LTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred Ee--CCHHHH---HhcCCEEEEEeCHHHHHHHHHHHH
Confidence 21 233332 246899999999987777666554
No 102
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.35 E-value=0.006 Score=53.80 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=26.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+ +||+|+|+|.+|..+++.|.+. ++++.. .++
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~-g~~v~~-~d~ 33 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKA-GYSLVV-YDR 33 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHC-CCeEEE-EcC
Confidence 54 6999999999999999999875 467654 444
No 103
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.33 E-value=0.012 Score=52.38 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC-eEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~-~el~~i~~~ 36 (265)
..||+|+|+|.+|..+++.|.+... .++. +.++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence 4799999999999999999987643 2444 4444
No 104
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.22 E-value=0.02 Score=50.32 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=50.2
Q ss_pred CccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
++++|+|+|+|.+|+.+.|.|.+.. .+.+.+..... .....+ .+.| +. ....
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~-~~~~~a------------------~~lg--v~-----d~~~- 54 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA-ATLKAA------------------LELG--VI-----DELT- 54 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH-HHHHHH------------------hhcC--cc-----cccc-
Confidence 4689999999999999999998764 33333332211 110000 0111 10 0010
Q ss_pred cCC--CCCCCccccCccEEEEecCCcccHHHHHHHH---hCCC
Q 024629 81 VRN--PEEIPWAETGAEYVVESTGVFTDKDKAAAHL---KGGA 118 (265)
Q Consensus 81 ~~d--~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~---~~g~ 118 (265)
.+ .+. ..++|+||.|+|...+.+.++++. +.|+
T Consensus 55 -~~~~~~~----~~~aD~VivavPi~~~~~~l~~l~~~l~~g~ 92 (279)
T COG0287 55 -VAGLAEA----AAEADLVIVAVPIEATEEVLKELAPHLKKGA 92 (279)
T ss_pred -cchhhhh----cccCCEEEEeccHHHHHHHHHHhcccCCCCC
Confidence 11 111 256899999999998888877665 4676
No 105
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.21 E-value=0.04 Score=48.55 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=25.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
+.||||+|+|.+|..++..+..+ +++++....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~ 36 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-GVDVLVFET 36 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-CCEEEEEEC
Confidence 45999999999999999998877 477655543
No 106
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.17 E-value=0.013 Score=48.82 Aligned_cols=91 Identities=22% Similarity=0.160 Sum_probs=55.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
|++++|+|.|.+|..|.++|.... .|++..+++..+ ..+.+.+ ..+ .. +... .
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~--~~~a~a~---------------~l~-~~------i~~~--~ 53 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPK--ALAAAAA---------------ALG-PL------ITGG--S 53 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC-CeEEEecCCChh--HHHHHHH---------------hhc-cc------cccC--C
Confidence 468999999999999999998763 677766555322 1111110 001 00 1111 1
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHh--CCCcEEEEcCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVIISAP 126 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~--~g~~~vviS~~ 126 (265)
..+. ....|+||.+.|-.......+.+.. .|. +||+..
T Consensus 54 ~~dA----~~~aDVVvLAVP~~a~~~v~~~l~~~~~~K--IvID~t 93 (211)
T COG2085 54 NEDA----AALADVVVLAVPFEAIPDVLAELRDALGGK--IVIDAT 93 (211)
T ss_pred hHHH----HhcCCEEEEeccHHHHHhHHHHHHHHhCCe--EEEecC
Confidence 1122 2568999999998877777777664 344 777433
No 107
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.15 E-value=0.024 Score=50.31 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|+||+|+|+|.+|..++..+..++..+++.+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~ 32 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLF 32 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 4699999999999999999887652355544
No 108
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.09 E-value=0.025 Score=52.80 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=59.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh-----hhhhhheeeeccc-CcccccceeeeCCceEEECCE-E
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-----DYMTYMFKYDSVH-GQWKHHELKVKDDKTLLFGEK-P 75 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~-----~~~a~l~~~~~~~-~~~~~~~v~~~~~~~l~~~g~-~ 75 (265)
..||+|.|+|.+|+.+++.|.+. +.+|+++.|.+... =.+..++.|-... +... + + ... .
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~--------~--~--~~~~~ 298 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS--------E--Y--AEEFG 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh--------h--h--hhhcC
Confidence 47999999999999999999876 59999998853221 0011111110000 1110 0 0 000 0
Q ss_pred EEEEecCCCCCCCccccCccEEEEecCCcc-cHHHHHHHHhCCCcEEEE
Q 024629 76 VTVFGVRNPEEIPWAETGAEYVVESTGVFT-DKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 76 i~~~~~~d~~~~~~~~~~~DvV~~atp~~~-~~~~~~~~~~~g~~~vvi 123 (265)
... .+.+++ |. .+|||++-|+.... +.+.+..+.+.+|| +|+
T Consensus 299 ~~~---i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 299 AEY---LEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred Cee---cCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 011 133444 53 57999999987654 66777777766775 444
No 109
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.03 E-value=0.016 Score=51.55 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=23.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+||+|+|+|.+|..+...|.+.. .++..+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~ 30 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDVTLW 30 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 58999999999999999998763 565433
No 110
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.02 E-value=0.018 Score=49.96 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC---eEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~---~el~~i~~~ 36 (265)
+||+++|+|.+|..+++.|.+... .++....++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999987642 255444244
No 111
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=95.99 E-value=0.0081 Score=60.21 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC---------CeEEEEEeccC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVAVNDPF 37 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p---------~~el~~i~~~~ 37 (265)
|++++|+|+|+|.+|+.++++|.++. ++++++|.++.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~ 501 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSR 501 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCC
Confidence 34689999999999999999987642 47889998764
No 112
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.98 E-value=0.016 Score=50.72 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=47.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC---eEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~---~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
.||+|+|+|.+|..+++.|.+... .++..+..+. .+....+. . . . .+ ..+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~--~~~~~~l~---~------------~----~--~~--~~~~- 55 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK--NEHFNQLY---D------------K----Y--PT--VELA- 55 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc--HHHHHHHH---H------------H----c--CC--eEEe-
Confidence 589999999999999999886642 4555554332 11111000 0 0 0 00 1121
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHH
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~ 114 (265)
.+..+. ..++|+||.|+|+....+.+..+.
T Consensus 56 -~~~~e~---~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 56 -DNEAEI---FTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred -CCHHHH---HhhCCEEEEecCHHHHHHHHHHHH
Confidence 222222 257899999999987777776553
No 113
>PRK08507 prephenate dehydrogenase; Validated
Probab=95.97 E-value=0.017 Score=50.46 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=49.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCC-eEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCC
Q 024629 5 KIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~-~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d 83 (265)
||+|+|+|.+|..+++.|.+... .++.+ .++. .+...... +.| + +... .+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~-~d~~--~~~~~~~~----------------~~g--~------~~~~--~~ 52 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYG-YDHN--ELHLKKAL----------------ELG--L------VDEI--VS 52 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEE-EcCC--HHHHHHHH----------------HCC--C------Cccc--CC
Confidence 89999999999999999987642 35444 3442 11111000 111 1 0011 12
Q ss_pred CCCCCccccCccEEEEecCCcccHHHHHHHHh--CCCcEEEE
Q 024629 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVII 123 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~--~g~~~vvi 123 (265)
++++ .++|+||.|+|.....+.+..+.. .|. +|+
T Consensus 53 ~~~~----~~aD~Vilavp~~~~~~~~~~l~~l~~~~--iv~ 88 (275)
T PRK08507 53 FEEL----KKCDVIFLAIPVDAIIEILPKLLDIKENT--TII 88 (275)
T ss_pred HHHH----hcCCEEEEeCcHHHHHHHHHHHhccCCCC--EEE
Confidence 3333 248999999999887777766543 444 555
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.86 E-value=0.016 Score=50.05 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=24.5
Q ss_pred EEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~ 36 (265)
||||+|+|.+|..+++.|.+.. ..+.+.+.++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence 7999999999999999988663 2333455555
No 115
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.82 E-value=0.02 Score=51.34 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++||+|+|+|.+|..++..|.+.. .++....
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~ 34 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG-VPVRLWA 34 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-CeEEEEe
Confidence 569999999999999999998763 5655443
No 116
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.78 E-value=0.033 Score=43.72 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=26.1
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+||+|+|+ |.+|..++-.|...+-..=..+.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~ 34 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI 34 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc
Confidence 58999999 9999999999988865443444454
No 117
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.77 E-value=0.062 Score=47.87 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|+++||+|+|+|.+|..+...|.+.. .++..+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~ 35 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLL 35 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence 34689999999999999999998753 5555444
No 118
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=95.74 E-value=0.023 Score=57.20 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=57.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccCCChhhhhhheeeecc---cCcccccceeeeCCceEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSV---HGQWKHHELKVKDDKTLLF 71 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p--------~~el~~i~~~~~~~~~~a~l~~~~~~---~~~~~~~~v~~~~~~~l~~ 71 (265)
.++|+|+|+|.+|+.++++|.++. ++++++|.++.... ++.. ...|. .... +..
T Consensus 465 ~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~--------~~~~g~~~~~~~-~~~~-~~~----- 529 (819)
T PRK09436 465 VLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKML--------LDEHGIDLDNWR-EELA-EAG----- 529 (819)
T ss_pred cccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccc--------cCCCCCCHHHHH-HHHh-hcc-----
Confidence 589999999999999999997643 47888887653211 0100 00111 0000 000
Q ss_pred CCEEEEEEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEEcCC
Q 024629 72 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 72 ~g~~i~~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vviS~~ 126 (265)
+...+..+- .-.... ....|+|||||+..........++++|+ .|+++.
T Consensus 530 ~~~~~~~~~-~~~~~~---~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN 578 (819)
T PRK09436 530 EPFDLDRLI-RLVKEY---HLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN 578 (819)
T ss_pred CCCCHHHHH-HHHhhc---CCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence 000000000 000000 0135899999998666667789999997 677655
No 119
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.68 E-value=0.018 Score=51.73 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=54.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
.+++|+|+|.+|+..++.+.....++-+.+.++..+ .+.++.- +. ...+ + .+..+ .
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~---------~~-----~~~~--~-----~~~~~--~ 184 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQE---------IQ-----SKFN--T-----EIYVV--N 184 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH---------HH-----HhcC--C-----cEEEe--C
Confidence 589999999999999988876556888888887422 1111100 00 0001 1 11222 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
+.++. ..++|+|+.|||.. +.... ..++.|.
T Consensus 185 ~~~~~---~~~aDiVi~aT~s~-~p~i~-~~l~~G~ 215 (325)
T PRK08618 185 SADEA---IEEADIIVTVTNAK-TPVFS-EKLKKGV 215 (325)
T ss_pred CHHHH---HhcCCEEEEccCCC-CcchH-HhcCCCc
Confidence 43433 25799999999977 45556 7889996
No 120
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.64 E-value=0.06 Score=48.36 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|| +||+|+|+|.+|..+...|.++. .++..+.
T Consensus 1 ~~-mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~ 32 (341)
T PRK08229 1 MM-ARICVLGAGSIGCYLGGRLAAAG-ADVTLIG 32 (341)
T ss_pred CC-ceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence 54 79999999999999999998773 5655554
No 121
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.56 E-value=0.061 Score=50.48 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=58.8
Q ss_pred ccEEEEEcc----ChhHHHHHHHHHcCCCe--EEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEE
Q 024629 3 KVKIGINGF----GRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPV 76 (265)
Q Consensus 3 ~~~V~IiG~----G~~G~~l~r~L~~~p~~--el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i 76 (265)
..+|+|+|+ |..|..+++.|.++. + ++..|+-.. +. + .| +
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~~------------~~-----------------i--~G--~ 52 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPKA------------GE-----------------I--LG--V 52 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCCC------------Cc-----------------c--CC--c
Confidence 568999999 678999999999875 3 444443211 00 0 11 2
Q ss_pred EEEecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 77 TVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 77 ~~~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+++ .+.++++ ..+|+++.|+|.....+.++++.+.|+|.+++
T Consensus 53 ~~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 53 KAY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred ccc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 233 2455553 56899999999999999999999999998876
No 122
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.52 E-value=0.027 Score=50.49 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=26.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~ 38 (265)
+.||+|+|+|.+|..++..+..+.-.+ +.+.|...
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~ 40 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVK 40 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCC
Confidence 358999999999999999887665346 66666643
No 123
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.44 E-value=0.035 Score=46.82 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.1
Q ss_pred cEEEEEc-cChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGING-FGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG-~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|||+|+| +|.+|..+++.|.+.. .++...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 3799998 6999999999998764 565543
No 124
>PRK06046 alanine dehydrogenase; Validated
Probab=95.41 E-value=0.026 Score=50.71 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=31.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.+|+|+|+|..|+..++.+...+.++.+.+.++.
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 5899999999999999999888889999999985
No 125
>PLN02602 lactate dehydrogenase
Probab=95.39 E-value=0.067 Score=48.54 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.||+|+|+|.+|..++-.|...+-..-..+.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999887764433344444
No 126
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.39 E-value=0.089 Score=47.12 Aligned_cols=34 Identities=38% Similarity=0.530 Sum_probs=26.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
..||+|+|+|.+|..+..++..+.-.+ +.+.|..
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 479999999999999999888775345 5555553
No 127
>PLN02712 arogenate dehydrogenase
Probab=95.39 E-value=0.039 Score=54.35 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=26.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++||+|||+|.+|+.+++.|.++. ++|.+..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~d 82 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHS 82 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEe
Confidence 579999999999999999998774 7776654
No 128
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.39 E-value=0.05 Score=50.59 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=63.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccCCChhhhhhheeeecccCcccccceeeeCC---ceEE--ECCE-
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FGEK- 74 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~-~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~---~~l~--~~g~- 74 (265)
+.||+|+|+ |-||...++.+.+||+ |+++++...+ +.+.++.+.+ .-.|++. ...+. ..|. +.+.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~-Ni~lL~~q~~--~f~p~~v----~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGS-NVTLLADQVR--KFKPKLV----AVRNESLVDELKEALADLD 129 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCC-CHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHhhcCCC
Confidence 369999999 9999999999999875 9999998764 4443332111 0011111 00000 0000 0000
Q ss_pred -EEEEEe-cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 75 -PVTVFG-VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 75 -~i~~~~-~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
...++. .++..++ ....++|+|+.+........-.-.++++|. .+.+
T Consensus 130 ~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaGK-~VAL 178 (454)
T PLN02696 130 DKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAGK-DIAL 178 (454)
T ss_pred CCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCCC-cEEE
Confidence 122322 1122222 112468999999987766666677888994 3444
No 129
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.34 E-value=0.051 Score=47.36 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.4
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+|.|.|+ |++|+.+++.|.+. +.++.++...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCC
Confidence 5889999 99999999999876 4677766543
No 130
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.30 E-value=0.074 Score=47.40 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=25.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~-el~~i~ 34 (265)
+||+|+|+ |++|..++..|...+.. +++.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence 48999999 99999999999988644 566554
No 131
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.26 E-value=0.11 Score=46.27 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+||+|+|+|++|..++..+..+...+ +.+.|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 58999999999999999988765336 444444
No 132
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.25 E-value=0.074 Score=47.49 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=25.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||+|+|+|.+|..++-.|...+-..=..+.|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4699999999999999998887765433344444
No 133
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.25 E-value=0.023 Score=50.26 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.||+|+|.|.+|..+++.|.++. .++. +.++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V~-v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQLQ-VFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence 48999999999999999998775 5654 4444
No 134
>PRK07680 late competence protein ComER; Validated
Probab=95.25 E-value=0.031 Score=48.73 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=46.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCe--EEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 5 KIGINGFGRIGRLVARVILQRDDV--ELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~--el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
||+|+|+|.+|..+++.|.+...+ +-+.+.+++ .+....+. . .+ .+ +.+. .
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~--~~~~~~~~---~---~~--------~g---------~~~~--~ 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT--PAKAYHIK---E---RY--------PG---------IHVA--K 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC--HHHHHHHH---H---Hc--------CC---------eEEE--C
Confidence 799999999999999998876422 334555553 22111110 0 00 01 1222 2
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHH
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHL 114 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~ 114 (265)
+..++ ..++|+||.|++.....+.++.+.
T Consensus 55 ~~~~~---~~~aDiVilav~p~~~~~vl~~l~ 83 (273)
T PRK07680 55 TIEEV---ISQSDLIFICVKPLDIYPLLQKLA 83 (273)
T ss_pred CHHHH---HHhCCEEEEecCHHHHHHHHHHHH
Confidence 33332 257899999999877666665543
No 135
>PLN02712 arogenate dehydrogenase
Probab=95.22 E-value=0.048 Score=53.68 Aligned_cols=31 Identities=32% Similarity=0.689 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++||||||+|.+|+.+++.|.+.. .+|.+..
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~d 399 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYS 399 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCc-CEEEEEE
Confidence 589999999999999999998764 6776553
No 136
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.19 E-value=0.13 Score=46.05 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=25.8
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+|.||+|+|+ |.+|..++..|..++...-..+.|.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3679999999 9999999999886654433333343
No 137
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.16 E-value=0.044 Score=48.72 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~ 31 (265)
.+||+|+|+|.+|..+.+.|.... .+|.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~ 31 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVR 31 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEE
Confidence 468999999999999999998764 4554
No 138
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.12 E-value=0.047 Score=48.35 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=24.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||||+|+|.+|..+++.|.++ +.++.. .++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~-~dr 31 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVG-YDH 31 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEE-EEC
Confidence 899999999999999999876 467655 444
No 139
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.11 E-value=0.069 Score=42.61 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=49.7
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCCC
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 84 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d~ 84 (265)
||+|+|+|.+|..++..|..+. .++. +..+. .+....+- ..+.... . ..+..+. . .+.+. .|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~-l~~~~--~~~~~~i~---~~~~n~~--~---~~~~~l~--~-~i~~t--~dl 63 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVT-LWGRD--EEQIEEIN---ETRQNPK--Y---LPGIKLP--E-NIKAT--TDL 63 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEE-EETSC--HHHHHHHH---HHTSETT--T---STTSBEE--T-TEEEE--SSH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEE-EEecc--HHHHHHHH---HhCCCCC--C---CCCcccC--c-ccccc--cCH
Confidence 7999999999999999999886 4443 33332 12211111 1111110 0 0011121 1 13332 455
Q ss_pred CCCCccccCccEEEEecCCcccHHHHHHHHh
Q 024629 85 EEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 85 ~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~ 115 (265)
++. ..++|+++.|+|.....+.++.+..
T Consensus 64 ~~a---~~~ad~IiiavPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 64 EEA---LEDADIIIIAVPSQAHREVLEQLAP 91 (157)
T ss_dssp HHH---HTT-SEEEE-S-GGGHHHHHHHHTT
T ss_pred HHH---hCcccEEEecccHHHHHHHHHHHhh
Confidence 443 3679999999999988888776654
No 140
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.08 E-value=0.067 Score=46.57 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC--eEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~--~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|+||+++|+|.+|..+++-|.+.+. -+-+.++++..+-. .++. . .| + . .. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~---~---~~---------g------~---~~-~ 53 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALA---A---EY---------G------V---VT-T 53 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHH---H---Hc---------C------C---cc-c
Confidence 3699999999999999999998862 34556666642221 1111 0 01 1 0 11 1
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHh--CCCcEEEEc
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK--GGAKKVIIS 124 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~--~g~~~vviS 124 (265)
.+..+. ....|+||.|.-+....+.+..+.. .+. .+||
T Consensus 54 -~~~~~~---~~~advv~LavKPq~~~~vl~~l~~~~~~~--lvIS 93 (266)
T COG0345 54 -TDNQEA---VEEADVVFLAVKPQDLEEVLSKLKPLTKDK--LVIS 93 (266)
T ss_pred -CcHHHH---HhhCCEEEEEeChHhHHHHHHHhhcccCCC--EEEE
Confidence 222222 2568999999998777777766642 443 5553
No 141
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.06 E-value=0.062 Score=47.93 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=26.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
..||+|+|+|.+|+.+++.|..+. .+-+.+.+++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~ 211 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRT 211 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence 468999999999999999998743 4445555553
No 142
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.05 E-value=0.028 Score=49.25 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=26.8
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
||-|.|+ |..|.+|.+.|. ++++++++....
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~ 33 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAE 33 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCcc
Confidence 4999999 999999999988 678888886654
No 143
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.05 E-value=0.03 Score=49.36 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.||+|+|+|.+|+.+++.|..+. +++...+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~ 181 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGA 181 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEEEEe
Confidence 58999999999999999999885 6765443
No 144
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.05 E-value=0.1 Score=46.49 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=24.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||+|+|+|.+|..++..|..++-+.=..+.|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999998887765543444444
No 145
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.99 E-value=0.24 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCC
Q 024629 4 VKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
+||+|+|+|.+|..++-+|....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 48999999999999999997664
No 146
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.95 E-value=0.053 Score=48.02 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=24.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||||||+|.+|..+++.|.++. ++|.. .++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~v-~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVVG-YDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEEE-EEC
Confidence 8999999999999999998764 67664 455
No 147
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.94 E-value=0.032 Score=43.40 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=26.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
..|+.|+|+|-+|+.++..|..+ +++-+.|..++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 36899999999999999999988 46644555553
No 148
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.88 E-value=0.12 Score=45.51 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
+||+|+|+|.+|..+...|.+.. .++..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 37999999999999999998763 56655543
No 149
>PLN00016 RNA-binding protein; Provisional
Probab=94.87 E-value=0.093 Score=47.90 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=28.1
Q ss_pred ccEEEEE----cc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGIN----GF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~Ii----G~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+.||.|. |+ |++|+.+++.|.+.. .++.++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecC
Confidence 4789999 99 999999999998874 688877654
No 150
>PRK07574 formate dehydrogenase; Provisional
Probab=94.86 E-value=0.047 Score=50.14 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.||+++++.|... ++++.+..
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~~d 222 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHYTD 222 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 6899999999999999999876 47776553
No 151
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.81 E-value=0.071 Score=49.41 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=24.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
||+|+|.|++|..++..|.+.. .++.++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~d 30 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTGVD 30 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEEEE
Confidence 8999999999999999998763 6766654
No 152
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.73 E-value=0.063 Score=47.55 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..||.|+|+|.+|+.+++.|.... .++....
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~ 182 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG-ANVTVGA 182 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence 368999999999999999999875 5655543
No 153
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.71 E-value=0.15 Score=45.02 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=58.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEE-EEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELV-AVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~-~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
+-||-|.|. |..|..+++.|.+.+ ++.+ .|+ +.... . ++ .| ++.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVn-p~~~~------------------~--------~v--~G--~~~y- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVT-PGKGG------------------T--------TV--LG--LPVF- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CCEEEEEC-CCCCC------------------C--------eE--eC--eecc-
Confidence 479999999 999999999998765 3333 333 21000 0 01 11 2333
Q ss_pred cCCCCCCCccccC--ccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 81 VRNPEEIPWAETG--AEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~d~~~~~~~~~~--~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+.++++ .. +|+++.++|.....+.++++.++|+|.++|
T Consensus 55 -~sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 -NTVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred -CCHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 3455553 33 899999999999999999999999988776
No 154
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.69 E-value=0.26 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=26.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||+|+|+|.+|..++-+|...+-+.-..+.|.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4799999999999999999988875533344444
No 155
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.58 E-value=0.11 Score=46.48 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=49.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe-
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG- 80 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~- 80 (265)
+.+|.|-|+ ||+|..+++.|+.+. -++.+-.....+.+...++.+.+... ..+.++.
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~--------------------~~l~l~~a 64 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAK--------------------ERLKLFKA 64 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccCc--------------------ccceEEec
Confidence 479999999 999999999999986 56666665544544333333222110 0112222
Q ss_pred -cCCCCCCCccccCccEEEEecCC
Q 024629 81 -VRNPEEIPWAETGAEYVVESTGV 103 (265)
Q Consensus 81 -~~d~~~~~~~~~~~DvV~~atp~ 103 (265)
..|++.++-...+||.||.+..+
T Consensus 65 DL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 65 DLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred cccccchHHHHHhCCCEEEEeCcc
Confidence 12344443345789999997654
No 156
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=94.50 E-value=0.061 Score=48.30 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh-hhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~-~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
.++||+|+|.+|+..++.+...+.++-+.|.+++.+- +.++..+ .++ + + .+... .
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------~~~---------g--~-----~v~~~--~ 184 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------SDY---------E--V-----PVRAA--T 184 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------Hhh---------C--C-----cEEEe--C
Confidence 6899999999999999998877678888888875322 1111000 000 1 0 11222 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
++++. ..++|+|+.|||... +-.....++.|.
T Consensus 185 ~~~ea---v~~aDiVitaT~s~~-P~~~~~~l~~g~ 216 (325)
T TIGR02371 185 DPREA---VEGCDILVTTTPSRK-PVVKADWVSEGT 216 (325)
T ss_pred CHHHH---hccCCEEEEecCCCC-cEecHHHcCCCC
Confidence 45443 268999999998643 222345678897
No 157
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.47 E-value=0.17 Score=44.56 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=24.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+||+|+|+|.+|..+...|.++. .++..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEEEe
Confidence 38999999999999999998763 4555544
No 158
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.46 E-value=0.036 Score=48.81 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||||+|+|.+|..+++.|.++. +++... ++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~~-dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLHVT-TI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEEEE-cC
Confidence 6999999999999999998774 676644 44
No 159
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.43 E-value=2.1 Score=35.72 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..||-|+|+|.+|...++.|.+.. .+++.++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs 40 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVVIS 40 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence 468999999999999999888774 5665553
No 160
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.42 E-value=0.08 Score=47.70 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=23.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|||+|+|.+|+.+++.|...-++++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~ 176 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY 176 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 689999999999999999843224666543
No 161
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.42 E-value=0.092 Score=47.20 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..+|||+|+|.+|..+++.|.... ++++....
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~r 48 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG-VDVVVGLR 48 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 368999999999999999998764 67665433
No 162
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.28 E-value=0.16 Score=45.09 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=24.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCe-EEEEEe
Q 024629 5 KIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~-el~~i~ 34 (265)
||+|+|+|.+|+.++..|...+-. +++.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999999999999999877644 555443
No 163
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.26 E-value=0.14 Score=40.31 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=26.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||+|+|+|.+|+.+++.|.++. .+-+.+.++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r 51 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR 51 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence 468999999999999999998775 444555555
No 164
>PLN03139 formate dehydrogenase; Provisional
Probab=94.25 E-value=0.07 Score=49.03 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|||+|+|+||+.+++.|... ++++.+ .++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~-~d~ 230 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLY-HDR 230 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEE-ECC
Confidence 6899999999999999999875 588755 444
No 165
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.25 E-value=0.21 Score=43.22 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=30.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
-.||+|-|+|.+|+.+++.|.+. +.++++|.|..
T Consensus 38 g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~ 71 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSK 71 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence 37999999999999999999887 59999999854
No 166
>PRK05086 malate dehydrogenase; Provisional
Probab=94.24 E-value=0.29 Score=43.72 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHc-CCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQ-RDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~-~p~~el~~i~~~ 36 (265)
+||+|+|+ |.+|..++..|.. .+....+.+.++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~ 35 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI 35 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence 48999999 9999999988854 444444444443
No 167
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=94.21 E-value=0.071 Score=47.63 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.||+++++.|... ++++.+..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~ 166 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRCWS 166 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 6899999999999999999976 47776653
No 168
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.21 E-value=0.069 Score=47.92 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=25.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.+|+++++.+... ++++.+..
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~d 172 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGYD 172 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEC
Confidence 6899999999999999999987 48776653
No 169
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.18 E-value=0.089 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred ccEEEEEc-cChhHHHHHHHHHcCC
Q 024629 3 KVKIGING-FGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG-~G~~G~~l~r~L~~~p 26 (265)
+.||+|+| .|.+|+.+.+.|..+.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G 122 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG 122 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC
Confidence 47899999 5999999999998763
No 170
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.11 E-value=0.17 Score=46.63 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=27.2
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
++||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEe
Confidence 579999999 999999999998874 67777654
No 171
>PRK06444 prephenate dehydrogenase; Provisional
Probab=94.08 E-value=0.14 Score=42.61 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHc
Q 024629 4 VKIGINGF-GRIGRLVARVILQ 24 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~ 24 (265)
+||+|+|+ |.+|+.+.+.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~ 22 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDD 22 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHh
Confidence 48999999 9999999987654
No 172
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.98 E-value=0.17 Score=47.30 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=23.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+||+|+|+ |.+|..+++.|.+.. .++....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEE
Confidence 38999985 999999999998764 5655443
No 173
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=93.96 E-value=0.12 Score=46.23 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|||||+|.+|+.+++.|... +++++...++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECc
Confidence 6899999999999999999877 4888765543
No 174
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.92 E-value=0.13 Score=45.48 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=24.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||||+|+|.+|..+++.|.+. +.++.. .++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v-~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVG-YDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEE-EEC
Confidence 899999999999999999876 366654 444
No 175
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.84 E-value=0.36 Score=43.06 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDV 28 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~ 28 (265)
+||+|+|+ |.+|..++..|..++-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~ 26 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLV 26 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 48999999 99999999998877643
No 176
>PLN00106 malate dehydrogenase
Probab=93.80 E-value=0.33 Score=43.54 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=25.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||+|+|+ |.+|..++..|..++..+-..+.|.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di 52 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI 52 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 469999999 9999999999987655433333343
No 177
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.79 E-value=0.15 Score=47.62 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=26.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++||+|+|.||+|.-++..|.+. ++++++.-.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~~--~~V~g~D~~ 37 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGKS--RQVVGFDVN 37 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhcC--CEEEEEeCC
Confidence 57999999999999999997763 888776543
No 178
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.76 E-value=2.2 Score=35.67 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=50.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe-c
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-V 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~-~ 81 (265)
-.||.|+|+|.+|..-++.|.+.. .+++.+ ++..+. .+..+. +.+ .+ .... .
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~-~l~~l~----------------~~~-~i-------~~~~~~ 61 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELES-ELTLLA----------------EQG-GI-------TWLARC 61 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCH-HHHHHH----------------HcC-CE-------EEEeCC
Confidence 358999999999999999998874 555544 332221 111010 011 12 1111 1
Q ss_pred CCCCCCCccccCccEEEEecCCc-ccHHHHHHHHhCCC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGA 118 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~-~~~~~~~~~~~~g~ 118 (265)
-+.+.+ .++|+||.||+.. ........+.+.|+
T Consensus 62 ~~~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~i 95 (205)
T TIGR01470 62 FDADIL----EGAFLVIAATDDEELNRRVAHAARARGV 95 (205)
T ss_pred CCHHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCC
Confidence 112223 5789999999975 55566666667776
No 179
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.75 E-value=0.18 Score=48.01 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+||||||+|.+|..++..|.++. ++|. +.++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence 58999999999999999998874 6655 4444
No 180
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.74 E-value=0.11 Score=47.33 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEEccChhHHHHHHHHHcC
Q 024629 5 KIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~ 25 (265)
||+|+|+|.+|..+++.|.++
T Consensus 2 ~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc
Confidence 799999999999999999876
No 181
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.71 E-value=0.092 Score=50.09 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.||||+|+|.+|..++..+..+ +++++...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEe
Confidence 6799999999999999998877 47776543
No 182
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.70 E-value=0.25 Score=43.51 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=58.8
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
.-||-|.|. |..|..+++.|...+ +.+++-..+.... +. + .| ++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~~V~p~~~~---------~~-----------------v--~G--~~~y-- 52 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYG-TNIVGGVTPGKGG---------TT-----------------V--LG--LPVF-- 52 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCC-CCEEEEECCCCCc---------ce-----------------e--cC--eecc--
Confidence 468999999 999999999998775 4444433231001 00 1 11 2333
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+.++++.. .++|+++.|.|.....+.++++.++|+|.++|
T Consensus 53 ~sv~dlp~~-~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 53 DSVKEAVEE-TGANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CCHHHHhhc-cCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 245555311 03799999999999999999999999988776
No 183
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.64 E-value=0.12 Score=42.12 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=27.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
-.+|||+|+|.+|+++++.|... ++++.+....
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-CceeEEeccc
Confidence 36899999999999999999987 4888777544
No 184
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.49 E-value=0.45 Score=42.70 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p 26 (265)
..||+|+|+ |.+|..++..|..+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 479999999 999999999888654
No 185
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=93.39 E-value=0.18 Score=38.92 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=31.7
Q ss_pred EEEEcc-ChhHHHHHHHHHcCC-CeEEEEEeccCCChhhh
Q 024629 6 IGINGF-GRIGRLVARVILQRD-DVELVAVNDPFITTDYM 43 (265)
Q Consensus 6 V~IiG~-G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~ 43 (265)
|+|+|+ |-+|+..++.+.+|| .|++++++..+ +.+.+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~L 39 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEKL 39 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHHH
Confidence 689999 999999999999998 69999999864 44443
No 186
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.36 E-value=0.11 Score=48.28 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=28.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|.++||+|+|.|++|..++..|.++. +++.++.
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D 33 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGVD 33 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence 77899999999999999999999874 7777664
No 187
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.29 E-value=0.13 Score=45.37 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEE
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~ 31 (265)
||++||.|.+|..+++.|.+.. +++.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~ 27 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLH 27 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEE
Confidence 7999999999999999998774 5654
No 188
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.22 E-value=0.17 Score=42.69 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=31.6
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCC
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~ 38 (265)
+..||+|.|+|.+|+.+++.|.+. +..+++++|...
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 357999999999999999999987 588999998753
No 189
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.22 E-value=0.26 Score=44.02 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=25.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
-.||+|+|+|.+|..+++.|.++. ++++....
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~~ 34 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNVIVGLR 34 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeEEEEEC
Confidence 468999999999999999998764 66544333
No 190
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.21 E-value=0.28 Score=43.84 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=51.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
++||+|+|+|..|..|+..|.++. .+.+ +. + +.+....+. .+...++|- . +-.+ . ..+.. .
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~l-w~--r--~~~~~~~i~-~~~~N~~yL-p------~i~l--p-~~l~a--t 62 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRL-WG--R--DEEIVAEIN-ETRENPKYL-P------GILL--P-PNLKA--T 62 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEE-Ee--c--CHHHHHHHH-hcCcCcccc-C------CccC--C-ccccc--c
Confidence 369999999999999999999874 2332 22 2 111111111 111111111 0 1001 0 01222 2
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHH---HhCCC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAH---LKGGA 118 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~---~~~g~ 118 (265)
.|.++. .+++|+|+++.|+....+.+..+ ++.+.
T Consensus 63 ~Dl~~a---~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~ 99 (329)
T COG0240 63 TDLAEA---LDGADIIVIAVPSQALREVLRQLKPLLLKDA 99 (329)
T ss_pred cCHHHH---HhcCCEEEEECChHHHHHHHHHHhhhccCCC
Confidence 345444 35699999999998877777664 34554
No 191
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.00 E-value=0.19 Score=46.25 Aligned_cols=29 Identities=38% Similarity=0.468 Sum_probs=23.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||+|+|.||+|.-++.++.. +++++++.-
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~ 30 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDI 30 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEEC
Confidence 89999999999999977664 477776653
No 192
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.97 E-value=0.51 Score=44.15 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=21.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcC
Q 024629 3 KVKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~ 25 (265)
.+||+|+|+ |.+|..++..|...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 589999999 99999999988876
No 193
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.97 E-value=0.37 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
++||+|+|+|..|..++..|.++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~ 34 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENT 34 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC
Confidence 479999999999999999998663
No 194
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.96 E-value=0.14 Score=44.88 Aligned_cols=32 Identities=38% Similarity=0.550 Sum_probs=27.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|++.||+|+|+|++|..++..+..+. .+++.+
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~ 32 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVMV 32 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence 66679999999999999999998874 566655
No 195
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.92 E-value=0.37 Score=42.95 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=48.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECC--E--EEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGE--K--PVTVF 79 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g--~--~i~~~ 79 (265)
+||.|+|+|.+|..+.-.|.+.+ -. +.+..+....+.+- +.| |.+.+ . .....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~-V~~~~R~~~~~~l~-------------------~~G--L~i~~~~~~~~~~~~ 57 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HD-VTLLVRSRRLEALK-------------------KKG--LRIEDEGGNFTTPVV 57 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-Ce-EEEEecHHHHHHHH-------------------hCC--eEEecCCCccccccc
Confidence 48999999999999999999886 23 33333322222110 001 21111 0 11122
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHh
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~ 115 (265)
...+++.. ..+|+||.++-.....+.++.+..
T Consensus 58 ~~~~~~~~----~~~Dlviv~vKa~q~~~al~~l~~ 89 (307)
T COG1893 58 AATDAEAL----GPADLVIVTVKAYQLEEALPSLAP 89 (307)
T ss_pred cccChhhc----CCCCEEEEEeccccHHHHHHHhhh
Confidence 22334443 478999999988777777666554
No 196
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.87 E-value=0.64 Score=41.53 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=24.1
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||+|+|+ |.+|..++..|...+...-..+.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di 33 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI 33 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence 7999999 9999999998887764433334443
No 197
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.71 E-value=0.28 Score=44.86 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=25.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|.||+|.-++-.+..+ +++++++-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~D 39 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGVD 39 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-CCceEeEe
Confidence 8999999999999998877766 58888873
No 198
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.68 E-value=4.3 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
-.||-|+|+|.+|.+.++.|.+.. .+++.|
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~g-a~V~VI 42 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTG-AFVTVV 42 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 378999999999999999988763 566655
No 199
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.64 E-value=0.56 Score=41.58 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=23.5
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+|+|+|++|..++-.|...+-+.-+.+.|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 6899999999999998887764443344444
No 200
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.54 E-value=0.15 Score=39.74 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=23.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|+|+|.+|.++++.|.... +.=..+.|
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG-VGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEc
Confidence 6899999999999999998764 43333444
No 201
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.47 E-value=0.19 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
++||+|+|+|.+|..+...|.++.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 579999999999999999998775
No 202
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.46 E-value=1.3 Score=41.46 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=26.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+||-|.|+ |++|+.|++.|.++. .+|+++.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld 151 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID 151 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence 379999999 999999999999874 6877764
No 203
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.41 E-value=0.53 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCC
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDD 27 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~ 27 (265)
.+||+|+|+ |.+|..++-.|...+-
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~ 28 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGEL 28 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCc
Confidence 589999999 9999999998887653
No 204
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.31 E-value=0.18 Score=41.05 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=23.0
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|+|+|-+|.+++..|.... +.=+.+.|
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD 30 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVD 30 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999999998764 54333333
No 205
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.31 E-value=0.69 Score=41.54 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDV 28 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~ 28 (265)
.||+|+|+ |.+|..++..|...+-+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~ 26 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELF 26 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCcc
Confidence 48999999 99999999998876533
No 206
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.30 E-value=0.19 Score=41.31 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|||+|+|.||+|.-++-.|.++. ++++++--
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~ 31 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGVDI 31 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE-S
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEEeC
Confidence 58999999999999999988884 88888743
No 207
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.25 E-value=0.25 Score=44.40 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=28.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.+++|+|+|..|+..++.|.....++-+.|.++.
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~ 163 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARD 163 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC
Confidence 5899999999999999999754458878888774
No 208
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.19 E-value=0.51 Score=43.39 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=22.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDV 28 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~ 28 (265)
..||+|+|+ |.+|..++-.|....-+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~ 70 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVF 70 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccc
Confidence 489999999 99999999988876533
No 209
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.12 E-value=0.58 Score=36.56 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=24.4
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+|+|+|.+|..++..|.+ ...++..+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEcc
Confidence 7899999999999999977 45676666554
No 210
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.03 E-value=0.65 Score=43.43 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
-.||+|.|+|.+|...++.|.+. +.+|++|.|.
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~ 260 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDS 260 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence 36999999999999999999876 5999999984
No 211
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=91.88 E-value=0.25 Score=45.07 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=59.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccCCChhhhhhheeeecccCcccccceeeeCC---ceEE--EC--CE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDD---KTLL--FG--EK 74 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~-~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~---~~l~--~~--g~ 74 (265)
.||+|+|+ |-+|...++.+.+||+ |++++++..+ +.+.+..+.+ .-.|++. ...+. ..+. .. +.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~-n~~~L~~q~~--~f~p~~v----~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGK-NVALMVEQIL--EFRPKFV----AIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHH--HcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence 59999999 9999999999999875 9999998865 4443332221 0012111 00000 0000 00 11
Q ss_pred EEEEEecC-CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 75 PVTVFGVR-NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 75 ~i~~~~~~-d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
.++++... ...++ -...++|+|+.+.-......-.-.++++|.
T Consensus 75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk 118 (389)
T TIGR00243 75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAGK 118 (389)
T ss_pred CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCCC
Confidence 12333211 11111 011458999998887766666667778884
No 212
>PLN00203 glutamyl-tRNA reductase
Probab=91.86 E-value=0.24 Score=47.33 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=25.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||+|+|+|.+|+.+++.|..++ ++-+.+.++
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nR 298 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNR 298 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeC
Confidence 468999999999999999998775 433444444
No 213
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.82 E-value=0.92 Score=42.81 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=51.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh-hhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~-~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
..||.|+|+|.+|.++++.|.++. .+++.+....... ..+...+ . +.| +.+...
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l---------~------~~g---------v~~~~~ 70 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG-ARVTVVDDGDDERHRALAAIL---------E------ALG---------ATVRLG 70 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHH---------H------HcC---------CEEEEC
Confidence 358999999999999999998774 6765543221111 1110000 0 112 122221
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.+.. . ..++|+||.+++..........+.+.|+ .++
T Consensus 71 ~~~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~ 106 (480)
T PRK01438 71 PGPT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVW 106 (480)
T ss_pred CCcc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eec
Confidence 2222 1 1468999999887655566666777786 445
No 214
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.79 E-value=0.13 Score=48.93 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.||+|||+|.+|..++..+..+ +++++...
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~l~d 35 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVLLYD 35 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEEEEe
Confidence 5899999999999999998877 47766543
No 215
>PRK05442 malate dehydrogenase; Provisional
Probab=91.64 E-value=0.35 Score=43.47 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=21.8
Q ss_pred CC-ccEEEEEcc-ChhHHHHHHHHHcCC
Q 024629 1 MG-KVKIGINGF-GRIGRLVARVILQRD 26 (265)
Q Consensus 1 m~-~~~V~IiG~-G~~G~~l~r~L~~~p 26 (265)
|+ +.||+|+|+ |.+|..++-.|....
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~ 28 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGD 28 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhh
Confidence 54 689999999 999999998877543
No 216
>PLN02206 UDP-glucuronate decarboxylase
Probab=91.43 E-value=1.5 Score=41.06 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+||-|.|+ |++|+.|++.|.++. .+++++.
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld 150 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD 150 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence 378999999 999999999999874 6777664
No 217
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=91.42 E-value=0.22 Score=44.85 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=61.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcC---CCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQR---DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~---p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
..-+-|.|| |++|+-+++.+... ++..+ +|+.++ .+++...|+. +....++.| ....|-+
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sl-avAGRn--~~KL~~vL~~-----------~~~k~~~~l--s~~~i~i 68 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSL-AVAGRN--EKKLQEVLEK-----------VGEKTGTDL--SSSVILI 68 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceE-EEecCC--HHHHHHHHHH-----------HhhccCCCc--ccceEEE
Confidence 367899999 99999999988763 33333 344442 2222222210 000111112 1111222
Q ss_pred EecCCCCCCCccccCccEEEEecCCcc--cHHHHHHHHhCCCcEEEEcCC
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~--~~~~~~~~~~~g~~~vviS~~ 126 (265)
....|++.++=....+.+|+.|.+++. -...++.+.+.|+.+++||+.
T Consensus 69 ~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE 118 (423)
T KOG2733|consen 69 ADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE 118 (423)
T ss_pred ecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence 222344433322467899999999865 345677888999988989876
No 218
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.29 E-value=0.56 Score=40.36 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=53.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcC---------C-CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceE-EE
Q 024629 3 KVKIGINGFGRIGRLVARVILQR---------D-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTL-LF 71 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~---------p-~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l-~~ 71 (265)
..||.|+|+|-+|.++++.|... | +++++.+-...-+...+-+.+-+.+.-|+.+ ..+..+. + .+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~r---i~~~ 86 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNK-AIVLVNR---LNQA 86 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHH-HHHHHHH---HHhc
Confidence 57999999999999999999753 2 3354444221112222222211122233333 1111100 0 01
Q ss_pred CCEEEEEEec-CCCCCCCccccCccEEEEecCCcccHHHHHHHHh
Q 024629 72 GEKPVTVFGV-RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 115 (265)
Q Consensus 72 ~g~~i~~~~~-~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~ 115 (265)
++..+..... -+.++. ..++|+||+|+....++..+.+...
T Consensus 87 ~~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~ 128 (244)
T TIGR03736 87 MGTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFE 128 (244)
T ss_pred cCceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHH
Confidence 1212222210 111222 2468999999999888877754443
No 219
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=91.25 E-value=0.41 Score=47.73 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCC-CeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~ 36 (265)
.||+|+|+|.+|..+++.|.+.. ..++.+ .++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~-~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVA-VDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence 68999999999999999998764 235444 344
No 220
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=91.07 E-value=0.25 Score=47.32 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.+|+++++.|... ++++.+..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 168 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLAYD 168 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 6899999999999999999876 47776653
No 221
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.96 E-value=0.58 Score=43.59 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=24.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
-.+|+|+|+|.+|+.+++.+.... ++++..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~ 241 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLG-ARVIVT 241 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 358999999999999999998774 665443
No 222
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=90.95 E-value=0.26 Score=45.85 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.7
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|+|+|+|.+|..+++.|..+. +.-+.+.++
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG-VGKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC-CCEEEEEeC
Confidence 58999999999999999998874 333344444
No 223
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=90.89 E-value=0.87 Score=42.17 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=54.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
.||-|+|+|-+|..+++.|.++. +.-+.|+.+... .+.++.-+ ++..+.+ .
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g-~~~i~IaNRT~erA~~La~~~------------------------~~~~~~l---~ 230 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKG-VKKITIANRTLERAEELAKKL------------------------GAEAVAL---E 230 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHh------------------------CCeeecH---H
Confidence 57999999999999999999986 555556555422 33332111 1111111 1
Q ss_pred CCCCCCccccCccEEEEecCCc---ccHHHHHHHHhCCCcE--EEEcCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVF---TDKDKAAAHLKGGAKK--VIISAP 126 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~---~~~~~~~~~~~~g~~~--vviS~~ 126 (265)
+..+. ..++|+||.||+.. ...+.++..++...+. ++|+-|
T Consensus 231 el~~~---l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 231 ELLEA---LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred HHHHh---hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence 21111 26799999998753 3566677766654321 334555
No 224
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.84 E-value=0.57 Score=41.44 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=22.9
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 6 IGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 6 V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
|+|+|+|++|..++..+..+...+++.+ |..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~-Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLL-DIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEE-eCC
Confidence 6899999999999998886642255444 543
No 225
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.77 E-value=0.94 Score=42.03 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=51.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 79 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~ 79 (265)
|...||.|+|.|.+|..+++.|.+.. .++.+ .|.... .... + .+ . . ...
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g-~D~~~~~~~~~----------------------~-~~--~-~--~~~ 50 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIG-VDKSLEALQSC----------------------P-YI--H-E--RYL 50 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEE-EeCCccccchh----------------------H-HH--h-h--hhc
Confidence 66789999999999999999998775 45444 333211 0000 0 00 0 0 000
Q ss_pred ecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCc
Q 024629 80 GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 80 ~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~ 119 (265)
.+.+.+ ..++|+||.+.|.......+..++++|++
T Consensus 51 --~~~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 51 --ENAEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred --CCcHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 112222 14589999988776667788888999983
No 226
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.66 E-value=0.62 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=24.8
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|+|+|++|.|++..|.+.. .++.-+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEec
Confidence 7899999999999999998764 67666544
No 227
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.63 E-value=0.43 Score=40.12 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||.|+|+|-+|.+++..|.... +.=..+.|
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD 59 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG-VGNLKLVD 59 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 468999999999999999998774 44333333
No 228
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.36 E-value=0.68 Score=42.97 Aligned_cols=31 Identities=13% Similarity=0.349 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|+|+|+|.+|+.+++.+.... .+++. ++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~ 233 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV 233 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence 58999999999999999888774 56554 444
No 229
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.36 E-value=0.39 Score=42.98 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|||+|+|.+|+++++.+... ++++.+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~ 177 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLIG 177 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence 5899999999999999999876 4777655
No 230
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.31 E-value=0.77 Score=42.54 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
-.+|+|+|+|.+|+.+++.+... +.+++.+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~ 224 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVT 224 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEE
Confidence 36899999999999999998876 4775554
No 231
>PRK12320 hypothetical protein; Provisional
Probab=90.22 E-value=2.3 Score=42.17 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=25.3
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|.|+ |++|+.+++.|.++. .++.++..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr 32 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQ 32 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC
Confidence 8999999 999999999998764 57777653
No 232
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.21 E-value=0.44 Score=42.72 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=26.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+||-|.|+ |++|..|++.|.++.+.+|.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 48999999 99999999999876557888775
No 233
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.20 E-value=1.8 Score=40.65 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=53.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
.+||.|+|.|..|+.++|.|.++. .++...-++. ...... ..+.. ..+ +.+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~-~~~~~~-------~~~~~-------~~~---------i~~~~g~ 61 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRP-APEGLA-------AQPLL-------LEG---------IEVELGS 61 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCC-Cccchh-------hhhhh-------ccC---------ceeecCc
Confidence 579999999999999999999875 5554443232 111000 00000 001 2222211
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCc
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 119 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~ 119 (265)
... .+| ..+|+|+.+-+-......+.++.+.|++
T Consensus 62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 122 223 5789999987766666788888899983
No 234
>PRK14030 glutamate dehydrogenase; Provisional
Probab=90.16 E-value=0.94 Score=42.38 Aligned_cols=105 Identities=15% Similarity=0.233 Sum_probs=59.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh--------hhhhhheeeecccCcccccceeeeCCceEEECCE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 74 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~--------~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~ 74 (265)
-.||+|=|+|.+|..+++.|.+. +.+|++|.|..... ..+.+++.+-...+.. ....- -.+.+
T Consensus 228 g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~-----~~~~~--~~~~g- 298 (445)
T PRK14030 228 GKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDI-----VAPYA--EKFPG- 298 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCcc-----HHHHH--hcCCC-
Confidence 36999999999999999999876 69999997764321 1111122111100000 00000 01111
Q ss_pred EEEEEecCCCCCCCccccCccEEEEec-CCcccHHHHHHHHhCCCcEEEE
Q 024629 75 PVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 75 ~i~~~~~~d~~~~~~~~~~~DvV~~at-p~~~~~~~~~~~~~~g~~~vvi 123 (265)
...+ +.+++ |. .+||+.+=|. ....+.+.++.+.+.++| +|+
T Consensus 299 -a~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 299 -STFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred -CEEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1121 23444 54 5799887654 455688888888888886 444
No 235
>PRK08291 ectoine utilization protein EutC; Validated
Probab=90.14 E-value=0.48 Score=42.60 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=27.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.+++|+|+|..|+..++.+.....++-+.|.+++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~ 166 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARD 166 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 5899999999999999988864447778887774
No 236
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=1.4 Score=41.20 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=51.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
..+|.|+|+|.+|..+++.|.++. .++... +.... +.+...+ ..+. ..+ +.++...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~~~~-~~~~~~~------~~l~------~~~---------~~~~~~~ 60 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVILT-DEKEE-DQLKEAL------EELG------ELG---------IELVLGE 60 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eCCch-HHHHHHH------HHHH------hcC---------CEEEeCC
Confidence 479999999889999999999885 565544 44211 1110000 0000 001 1122212
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
.+++. ..++|+||-+++.....+.+..+.+.|+
T Consensus 61 ~~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 61 YPEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred cchhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22222 2468999999987666666777777776
No 237
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.10 E-value=0.42 Score=42.66 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
-.+|||+|+|.||+++++.+... ++++.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-gm~V~~~ 174 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-GAKVVYY 174 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-CCEEEEE
Confidence 36899999999999999999866 4776654
No 238
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.02 E-value=0.52 Score=43.56 Aligned_cols=39 Identities=31% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC-CeEEEEEeccCCC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFIT 39 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p-~~el~~i~~~~~~ 39 (265)
|++.||.|+|+|+.|..+++.|.+++ +++++-|..+...
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 67799999999999999999999884 7888888665433
No 239
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.00 E-value=0.49 Score=38.69 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=23.9
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||+|+|+|.+|+.++..+..+ ++++.....
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEEC
Confidence 799999999999999999888 577665543
No 240
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.97 E-value=0.44 Score=42.57 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|||+|+|.+|+++++.+... ++++.+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~ 176 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYA 176 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence 6899999999999999998876 4777654
No 241
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.97 E-value=0.59 Score=38.87 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=27.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.++|+|+|+|.+|+.+++.|.+.. .+++ +.++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence 468999999999999999999874 7888 5555
No 242
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.89 E-value=0.5 Score=41.54 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|...||+|+|+|.+|..++..+..+. ++++.+
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G-~~V~l~ 32 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTG-YDVTIV 32 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcC-CeEEEE
Confidence 54568999999999999999998874 666554
No 243
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.72 E-value=0.58 Score=41.18 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=26.7
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|+ ..||+|+|+|.+|..+++.|..+ +.++....
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d 34 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAA-GMDVWLLD 34 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhc-CCeEEEEe
Confidence 54 47899999999999999999877 46766553
No 244
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=89.65 E-value=0.66 Score=41.22 Aligned_cols=89 Identities=11% Similarity=-0.053 Sum_probs=53.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d 83 (265)
.+++|+|+|..|+..++.+..-..++=+.|.++..+ ....+. + .+....+ -++.+. .+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~--~a~~f~---~--------~~~~~~~-------~~v~~~--~~ 175 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFD--HARAFA---E--------RFSKEFG-------VDIRPV--DN 175 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHH--HHHHHH---H--------HHHHhcC-------CcEEEe--CC
Confidence 589999999999999999887656887888777422 111110 0 0000001 112232 34
Q ss_pred CCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 84 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
+++. ..++|+|+.||+... +-.-...++.|.
T Consensus 176 ~~ea---v~~aDIV~taT~s~~-P~~~~~~l~pg~ 206 (301)
T PRK06407 176 AEAA---LRDADTITSITNSDT-PIFNRKYLGDEY 206 (301)
T ss_pred HHHH---HhcCCEEEEecCCCC-cEecHHHcCCCc
Confidence 5443 368999999999653 222345667886
No 245
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.65 E-value=0.43 Score=44.43 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=25.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|+|+|+|.+|+.+++.|.... ++-+.+.++
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 68999999999999999998764 543445555
No 246
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=89.63 E-value=0.49 Score=44.96 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+.+||+||.|.||..+++.|.++. ++|..-+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G-~~V~V~N 36 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG-FPISVYN 36 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC-CeEEEEC
Confidence 578999999999999999999885 7766443
No 247
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.60 E-value=0.55 Score=41.24 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.4
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|...||+|+|+|.+|..++..+..+. .++..+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G-~~V~l~ 32 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHG-FDVTIY 32 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence 54579999999999999999988763 554444
No 248
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=89.57 E-value=1.7 Score=37.86 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCC
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDD 27 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~ 27 (265)
-.|||+|+ |-+|..+.|.|..|-.
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~~ 192 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKVG 192 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccccC
Confidence 57999999 9999999999997743
No 249
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.40 E-value=0.81 Score=40.87 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=23.4
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||+|+|+|.+|..+...|.+.. .++. +.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~-l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN-LWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE-EEec
Confidence 7999999999999999998763 4444 3344
No 250
>PRK08219 short chain dehydrogenase; Provisional
Probab=89.24 E-value=0.57 Score=38.83 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|+|+++-|.|+ |.+|+.+++.|.++ .+++.+..
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r 34 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLGGR 34 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeC
Confidence 66678999999 99999999999887 56666643
No 251
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.18 E-value=3.2 Score=30.41 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..+|.|+|.|.+|.+=++.|.+.. .++..+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence 478999999999999999999885 677666544
No 252
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.18 E-value=0.5 Score=40.65 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
..||.|+|+|-+|.++++.|....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 469999999999999999998764
No 253
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.11 E-value=2 Score=38.15 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+||+|+|+|.+|.-+.-.|.+.. .++..+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~ 32 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLIL 32 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEEE
Confidence 369999999999999998887653 4555444
No 254
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=89.09 E-value=0.57 Score=44.30 Aligned_cols=33 Identities=36% Similarity=0.431 Sum_probs=27.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~ 35 (265)
|+||+|+|+||+|.-+.-.|.++ .+++++++-.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~ 34 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDI 34 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEC
Confidence 35899999999999999999876 3688888843
No 255
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=89.06 E-value=0.53 Score=42.24 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHH-cCCCeEEEE
Q 024629 4 VKIGINGFGRIGRLVARVIL-QRDDVELVA 32 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~-~~p~~el~~ 32 (265)
.+|||+|+|.||+++++.+. .. ++++.+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~ 174 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILY 174 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEE
Confidence 68999999999999999987 55 477664
No 256
>PRK07236 hypothetical protein; Provisional
Probab=89.06 E-value=0.54 Score=42.93 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=27.1
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|++.+|.|||+|.+|..++..|.++ +++++-+-
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEe
Confidence 5678999999999999999999887 46655443
No 257
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.70 E-value=0.61 Score=41.47 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
-.+|||+|+|.+|++++++|... ++++.+..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G~~V~~~~ 152 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-GMNIYAYT 152 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence 36899999999999999988765 47776654
No 258
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.67 E-value=0.73 Score=40.49 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=25.4
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+..||+|+|+|.+|..++..|..+ ++++...
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~ 33 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALA-GYDVLLN 33 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEE
Confidence 357899999999999999999876 3666544
No 259
>PLN02928 oxidoreductase family protein
Probab=88.59 E-value=0.63 Score=42.22 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=26.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.+|+++++.|... ++++.+..
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~~d 189 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLATR 189 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEEEC
Confidence 6899999999999999999877 48887663
No 260
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=88.46 E-value=0.73 Score=41.67 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=32.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCC-eEEEEEeccCCChh
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVAVNDPFITTD 41 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~-~el~~i~~~~~~~~ 41 (265)
|.|+.|+|. |-||...++.+.++|+ |+++++.... +.+
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~-n~~ 40 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGK-NVE 40 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCC-cHH
Confidence 369999999 9999999999999985 8999998764 443
No 261
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.43 E-value=0.63 Score=40.02 Aligned_cols=104 Identities=17% Similarity=0.283 Sum_probs=57.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCC--------CeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEEC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRD--------DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG 72 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p--------~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~ 72 (265)
|++++|+++|+|.+|++++..+..-. .++++++++.....-...++. ......|. ..+..+.+
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p--~nl~sewk-~~L~~st~------ 71 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLP--ENLNSEWK-SELIKSTG------ 71 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccCh--hhhchHHH-HHHHHhcC------
Confidence 67899999999999999999876421 378899987642211110000 00011121 10000111
Q ss_pred CEEEEEEecCC-CCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 73 EKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 73 g~~i~~~~~~d-~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
..+.. ++ .+.+ ......=+++|||......+..+++++.|+
T Consensus 72 -~alsL---daLia~L-~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi 113 (364)
T KOG0455|consen 72 -SALSL---DALIAKL-LGSPTPLILVDNTASMEIAEIYMKFVDLGI 113 (364)
T ss_pred -CcccH---HHHHHHH-cCCCCceEEEecccHHHHHHHHHHHHhcCc
Confidence 11110 00 0111 011234588999998888888899999997
No 262
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.42 E-value=2 Score=41.53 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=26.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|.|.|+ |.+|+.+++.|.++ +.+|+++...
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~Rn 113 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGVRS 113 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 56899999 99999999999887 4777776543
No 263
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=88.41 E-value=2.1 Score=37.07 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.8
Q ss_pred EEEEcc-ChhHHHHHHHHHcCC
Q 024629 6 IGINGF-GRIGRLVARVILQRD 26 (265)
Q Consensus 6 V~IiG~-G~~G~~l~r~L~~~p 26 (265)
|+|+|+ |.+|..++..|...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689999 999999999888765
No 264
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.41 E-value=1.6 Score=43.59 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.||+|+|+|.+|..++..+....+++++..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~ 339 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK 339 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence 589999999999999998873435666554
No 265
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.35 E-value=0.45 Score=39.63 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
..||.|+|+|-+|.++++.|....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Confidence 468999999999999999998874
No 266
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.29 E-value=0.37 Score=40.89 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|-+|.++++.|.... +.-..+.|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~ 53 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDD 53 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 469999999999999999998774 544444443
No 267
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.28 E-value=0.83 Score=41.29 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=25.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|.+|..+++.|.... +.-+.+.|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-IGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999999998764 544444454
No 268
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=88.24 E-value=0.71 Score=41.55 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|+++||-|.|+ |++|..|++.|.++. .+++++..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~ 47 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDN 47 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence 34679999999 999999999999884 67777753
No 269
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.24 E-value=1.4 Score=39.86 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEEccChhHHHHHHHHHcC
Q 024629 5 KIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~ 25 (265)
||+|+|+|..|..++..|.++
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 699999999999999999864
No 270
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.21 E-value=2 Score=34.69 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=21.6
Q ss_pred ccEEEEEccCh-hHHHHHHHHHcCCCeEEE
Q 024629 3 KVKIGINGFGR-IGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~~~V~IiG~G~-~G~~l~r~L~~~p~~el~ 31 (265)
-.||.|+|+|. +|..+++.|.++. .++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g-~~V~ 72 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRN-ATVT 72 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCC-CEEE
Confidence 36899999986 5888999998874 4533
No 271
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.08 E-value=0.68 Score=46.13 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.||+|+|+|.+|..++..+..+ +++++.+-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEEe
Confidence 5899999999999999988877 46665543
No 272
>PRK06199 ornithine cyclodeaminase; Validated
Probab=88.06 E-value=1.1 Score=41.28 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=29.7
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~~~~ 37 (265)
.+++|+|+|..++..++.+.. +|.++=+.|.++.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~ 190 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG 190 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC
Confidence 589999999999999999887 6778888888875
No 273
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.05 E-value=1.5 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=25.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
.+|-|.|+ |++|+.+++.|.++. .+++++..
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEEEc
Confidence 58999999 999999999999874 57766653
No 274
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.99 E-value=1.4 Score=40.30 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.||.|+|+|.+|+..++.+.... .++..+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~ 196 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLG-ATVTIL 196 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCC-CeEEEE
Confidence 57999999999999999998774 565444
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.96 E-value=1.2 Score=40.37 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+|.|+|+|.+|...+.++...+--+++.+ |.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~ 201 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR 201 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC
Confidence 79999999999988777766654555554 55
No 276
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.89 E-value=0.8 Score=41.24 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++|||+|+|.+|+.+++.|... ++++.+..
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d 176 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITAYD 176 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEe
Confidence 5899999999999999999876 47776553
No 277
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.81 E-value=0.65 Score=43.51 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=28.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEE-EEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVEL-VAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el-~~i~~~~ 37 (265)
|++|+|||.|..|-.++..|.++|..+- +.|..+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~ 36 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR 36 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence 4799999999999999999999876554 6666654
No 278
>PLN02858 fructose-bisphosphate aldolase
Probab=87.74 E-value=0.86 Score=48.69 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+.|||++|.|+||..+++.|.+.. +++...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G-~~V~v~ 353 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN-FSVCGY 353 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC-CEEEEE
Confidence 478999999999999999998774 666544
No 279
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.65 E-value=2.2 Score=37.84 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|+|+|. |.+|+-++++|.++. ..+...+
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~ 190 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVVH 190 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEEEEC
Confidence 68999999 799999999998763 5554443
No 280
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=87.61 E-value=2.8 Score=37.69 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred CccEEEEEccChhHHHHHHHHHcC
Q 024629 2 GKVKIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~ 25 (265)
+.+||+|+|.|..|..+++.+.+.
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n 43 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGEN 43 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhh
Confidence 468999999999999999988753
No 281
>PRK08223 hypothetical protein; Validated
Probab=87.54 E-value=0.9 Score=40.03 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.-||.|+|+|-+|.+++..|..-. +.=..+.|.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~ 59 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADF 59 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 468999999999999999988764 444444443
No 282
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.54 E-value=2.4 Score=37.44 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=24.0
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
-+|.|+|+|.+|...+.++... +.+.+.+.+.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~ 177 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAA-GGSPPAVWET 177 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCceEEEeCC
Confidence 3689999999999999877766 4665555554
No 283
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.46 E-value=0.74 Score=42.23 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
-.+|||+|+|.+|+.+++.|... ++++.+.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~-G~~V~~~ 145 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL-GIKTLLC 145 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEE
Confidence 36899999999999999999877 4777654
No 284
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.45 E-value=0.81 Score=41.24 Aligned_cols=31 Identities=39% Similarity=0.543 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|||+|+|.+|+++++.|... ++++.+. ++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~ 181 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRILYY-SR 181 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEEE-CC
Confidence 6999999999999999999876 4776544 44
No 285
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.43 E-value=0.91 Score=40.23 Aligned_cols=33 Identities=21% Similarity=0.458 Sum_probs=26.3
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|. ..||+|+|+|.+|..++..|.+. +.++..+.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d 34 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARK-GLQVVLID 34 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhC-CCeEEEEE
Confidence 54 36899999999999999999876 46766553
No 286
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.38 E-value=0.79 Score=45.67 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.||+|+|+|.+|..++..+..+ +++++.+-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d 343 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-GTPIVMKD 343 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-CCeEEEEe
Confidence 5899999999999999988877 47766553
No 287
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.31 E-value=3.2 Score=39.20 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~ 32 (265)
..||+|+|+|..|+..+|+|.++. .+++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g-~~v~~ 36 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL-PAQAL 36 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC-CEEEE
Confidence 358999999999999999999874 55433
No 288
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=87.17 E-value=0.57 Score=46.82 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.||+|+|+|.+|..++..+..+ +++++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~ 364 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLK 364 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEe
Confidence 5899999999999999988877 5776654
No 289
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.12 E-value=0.54 Score=39.17 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||+|+|+|-+|.+++..|.... +.=+.+.|.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G-vg~i~lvD~ 53 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG-IGKLILVDF 53 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 478999999999999999998764 543334443
No 290
>PLN02858 fructose-bisphosphate aldolase
Probab=87.12 E-value=0.87 Score=48.66 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=26.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..|||+||.|.||..+++.|.++. +++. +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G-~~v~-v~dr 35 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSG-FKVQ-AFEI 35 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCC-CeEE-EEcC
Confidence 468999999999999999999874 6665 4444
No 291
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.11 E-value=0.83 Score=41.04 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.++||+|.|+||+.++|.+..- ++++.+-.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~~ 176 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYYD 176 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEEEC
Confidence 6899999999999999999855 36655443
No 292
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=87.06 E-value=0.85 Score=36.65 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=44.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCC-ChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI-TTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~-~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
..+|+|+|||..|......|.++. ++++.-..... +.+. ..++| + .+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG-~~V~Vglr~~s~s~~~-------------------A~~~G--f-------~v~-- 52 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSG-VNVIVGLREGSASWEK-------------------AKADG--F-------EVM-- 52 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHH-------------------HHHTT----------ECC--
T ss_pred CCEEEEECCChHHHHHHHHHHhCC-CCEEEEecCCCcCHHH-------------------HHHCC--C-------eec--
Confidence 368999999999999999998874 77654433321 2211 11234 2 121
Q ss_pred CCCCCCCccccCccEEEEecCCcccHHHH----HHHHhCCC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTDKDKA----AAHLKGGA 118 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~~~~~----~~~~~~g~ 118 (265)
+.++. ....|+|+..+|-....+.. ...++.|.
T Consensus 53 -~~~eA---v~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~ 89 (165)
T PF07991_consen 53 -SVAEA---VKKADVVMLLLPDEVQPEVYEEEIAPNLKPGA 89 (165)
T ss_dssp -EHHHH---HHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-
T ss_pred -cHHHH---HhhCCEEEEeCChHHHHHHHHHHHHhhCCCCC
Confidence 12222 25689999999976655543 45567785
No 293
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=86.99 E-value=0.3 Score=43.58 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 80 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~ 80 (265)
|... |||.|.|...+-++-+|.+-| |++.++-.+. .. .+... .... ..+...
T Consensus 1 m~Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt-~~--ea~a~------------------aa~~-----~v~~~t 52 (367)
T KOG2742|consen 1 MSPG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRT-KT--EAKAK------------------AAEM-----NVRKYT 52 (367)
T ss_pred CCCc-eeEeccChhHhhhhhhhhhcc-chHhhhhchh-hh--HHHHh------------------hhcc-----chhhcc
Confidence 6655 999999999999988888888 8887776652 11 11000 0001 112211
Q ss_pred cCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 81 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 81 ~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
...+++ |...++|+|+.+.|+..+.+.+.+.+..| |+|++
T Consensus 53 -~~~dei-Ll~~~vdlv~i~lpp~~~~eI~~kal~~G-k~Vvc 92 (367)
T KOG2742|consen 53 -SRLDEI-LLDQDVDLVCISLPPPLHAEIVVKALGIG-KHVVC 92 (367)
T ss_pred -ccchhh-hccCCcceeEeccCCccceeeeeccccCC-ceEEe
Confidence 234455 55689999999999999999999999999 55666
No 294
>PRK05865 hypothetical protein; Provisional
Probab=86.87 E-value=2.6 Score=42.88 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=25.5
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|.|+ |.+|+.+++.|.++. .+++++..
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R 32 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGIAR 32 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEEC
Confidence 7999999 999999999998874 67776653
No 295
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=86.85 E-value=2.7 Score=37.35 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=58.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
-||-|.|. |.-|....+.+.+.+ -++++=..+....+ . + .| ++.+ .
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~yg-t~~~~gV~p~~~~~---------~-----------------i--~G--~~~y--~ 59 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPKKGGT---------E-----------------H--LG--LPVF--N 59 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHhC-CcEEEEECCCCCCc---------e-----------------E--cC--eecc--C
Confidence 68999999 999999999988885 45544443421110 0 1 11 2333 2
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+.++++- ..++|+++.++|.....+.++++.++|+|.++|
T Consensus 60 sv~dlp~-~~~~DlAvI~vPa~~v~~al~e~~~~Gvk~~vI 99 (300)
T PLN00125 60 TVAEAKA-ETKANASVIYVPPPFAAAAILEAMEAELDLVVC 99 (300)
T ss_pred CHHHHhh-ccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence 4455531 013799999999999999999999999997776
No 296
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=86.74 E-value=2.9 Score=39.21 Aligned_cols=104 Identities=13% Similarity=0.252 Sum_probs=59.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh--------hhhhhheeeecc-cCcccccceeeeCCceEEECC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT--------DYMTYMFKYDSV-HGQWKHHELKVKDDKTLLFGE 73 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~--------~~~a~l~~~~~~-~~~~~~~~v~~~~~~~l~~~g 73 (265)
-.||+|=|+|.+|..+++.|.+. +.+++++.|..... ..+.+++.+-.. .+... .. .. . ..+
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~~---~~---~-~~~ 307 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-EY---AK---H-SST 307 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-hh---hh---c-cCC
Confidence 36999999999999999999876 59999999875211 111111110000 01000 00 00 0 001
Q ss_pred EEEEEEecCCCCCCCccccCccEEEEec-CCcccHHHHHHHHhCCCcEEEE
Q 024629 74 KPVTVFGVRNPEEIPWAETGAEYVVEST-GVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 74 ~~i~~~~~~d~~~~~~~~~~~DvV~~at-p~~~~~~~~~~~~~~g~~~vvi 123 (265)
...+ +.+++ |. .+||+.+=|. ....+.+.++.+.+.+|| +|+
T Consensus 308 --a~~~---~~~~~-~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 308 --AKYV---PGKKP-WE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred --cEEe---CCcCc-cc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1121 23444 65 5799888765 455677888888888986 444
No 297
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=86.72 E-value=3.3 Score=36.29 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 8 INGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 8 IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|.|+ |++|+.+++.|.++++..-+.+.++
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~ 31 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR 31 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899 9999999999999875333334343
No 298
>PLN02427 UDP-apiose/xylose synthase
Probab=86.71 E-value=1.1 Score=40.98 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
.+||-|.|+ |++|+.|++.|.++.+.+++++..
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 468999999 999999999999875568877753
No 299
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.43 E-value=0.98 Score=41.92 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.+|+++++.+... ++++.+..
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEC
Confidence 5899999999999999999876 47776553
No 300
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.39 E-value=0.97 Score=38.34 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=26.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+++.|+|+|..|..+++.|.+.. .+++.|-..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC
Confidence 48999999999999999999874 566666544
No 301
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.34 E-value=2 Score=41.26 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
+.++-|+|+|..|..++|.+..+|....+++.|..
T Consensus 116 ~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd 150 (588)
T COG1086 116 RIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDD 150 (588)
T ss_pred CCceEEEcCchHHHHHHHHHHhCCCcceEEEECCC
Confidence 47899999999999999999999999999998873
No 302
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=86.11 E-value=1.9 Score=38.31 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred EEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 8 IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|||+|.+|..++..|..++-+.=..+.|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999988775543444444
No 303
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.07 E-value=0.96 Score=40.37 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~~~~ 37 (265)
.+|+|+|+|.+|+..++.+.. ++ ++=+.|.+++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs 159 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRD 159 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCC
Confidence 689999999999999986665 55 5555565663
No 304
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.94 E-value=2.3 Score=37.19 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.++.|+|+|-+|+.+++.|....-.+ +.+.++
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~-V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAE-ITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCE-EEEEeC
Confidence 58999999999999999999775234 444445
No 305
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.93 E-value=12 Score=31.79 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=23.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..+|-|+|+|.++.+=++.|.+.. .++..|+
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG-CYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEc
Confidence 368999999999999888888763 5554443
No 306
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.87 E-value=2.5 Score=39.34 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|+|.|+|+|++|+.+++.|.+. +.+++.+..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEEC
Confidence 3899999999999999999876 467776643
No 307
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.82 E-value=0.99 Score=40.11 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=27.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.+++|+|+|.+|+..++.+..-..++-+.|.++.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 6899999999999999999753235667777774
No 308
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=85.78 E-value=0.75 Score=40.80 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=23.6
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|+|+|-.|.++++.|.... +.=..+.|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG-Vg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG-VRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence 6899999999999999998764 54444444
No 309
>PLN02477 glutamate dehydrogenase
Probab=85.69 E-value=1.3 Score=41.09 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=30.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
-.||+|.|+|.+|+.++++|.+. +.++++|+|.+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~ 239 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDIT 239 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 36999999999999999999877 59999999875
No 310
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=85.65 E-value=2.5 Score=37.29 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=26.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|-|.|+ |++|+.+++.|.++. .+++++...
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~ 38 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVRD 38 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECC
Confidence 68999999 999999999999875 677766554
No 311
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.64 E-value=1.2 Score=39.59 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=24.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+||+|+|+|.+|..++..|.++. .+|....
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRLWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEEEe
Confidence 48999999999999999999874 6665553
No 312
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.59 E-value=1.1 Score=41.27 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|||+|+|.+|+++++.|... ++++.+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~~ 145 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLVC 145 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 6899999999999999999876 4776544
No 313
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=85.24 E-value=1.1 Score=38.23 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=30.1
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
|.+++ . ..++|+|++|+|+..+.+++.+++++|+. +++
T Consensus 29 d~~eL-l-~~~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~ 66 (229)
T TIGR03855 29 DFDEF-L-PEDVDIVVEAASQEAVKEYAEKILKNGKD-LLI 66 (229)
T ss_pred CHHHH-h-cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 44554 1 24699999999999999999999999964 444
No 314
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.09 E-value=1.3 Score=39.41 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+||+|+|+|++|..++..|...+-..-+.+.|+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 389999999999999999988764444445554
No 315
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=84.94 E-value=5.6 Score=36.76 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=30.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFI 38 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~ 38 (265)
.||+|=|+|.+|+.+++.|... +.+|+++.+...
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g 241 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKG 241 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCC
Confidence 6999999999999999999877 799999988754
No 316
>PRK06823 ornithine cyclodeaminase; Validated
Probab=84.94 E-value=1.6 Score=39.13 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=53.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCCh-hhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITT-DYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~-~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
.+++|+|+|..++..++.+..-..++=+.|.+++.+- +.++..+ . +.+ + .+.+. .
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~--------------~-~~~--~-----~v~~~--~ 184 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA--------------Q-ALG--F-----AVNTT--L 184 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH--------------H-hcC--C-----cEEEE--C
Confidence 5899999999999999998876568888888775221 1111000 0 001 1 12222 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
++++. ..++|+|+.||+... +-.-...++.|.
T Consensus 185 ~~~~a---v~~ADIV~taT~s~~-P~~~~~~l~~G~ 216 (315)
T PRK06823 185 DAAEV---AHAANLIVTTTPSRE-PLLQAEDIQPGT 216 (315)
T ss_pred CHHHH---hcCCCEEEEecCCCC-ceeCHHHcCCCc
Confidence 44443 268999999998643 222245677886
No 317
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.91 E-value=1.3 Score=40.30 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC--CCeEEEEEec
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVAVND 35 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~--p~~el~~i~~ 35 (265)
|++++|.|||+|..|..++-.|.++ .+++++.+-.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 8889999999999999999998876 3577665543
No 318
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.86 E-value=3.9 Score=36.58 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeE-EEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~e-l~~i 33 (265)
-+|.|+|+|.+|...+.++... +.+ ++++
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~ 200 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL-GAAEIVCA 200 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEE
Confidence 4789999999999999877766 353 4444
No 319
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.66 E-value=4 Score=38.72 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=49.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec-C
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-R 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~-~ 82 (265)
.||.|+|+|.+|...++.|.... .++.. .|.. ......+. +.| +.++.. .
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~~--~~~~~~l~----------------~~g---------~~~~~~~~ 63 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDDD--PDALRPHA----------------ERG---------VATVSTSD 63 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcCC--HHHHHHHH----------------hCC---------CEEEcCcc
Confidence 58999999999999999888764 56555 5532 11111000 112 112111 1
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
+++.+ .++|+||.+.+-.........+.++|+
T Consensus 64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22223 468999998876656566777778887
No 320
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.34 E-value=1.8 Score=36.14 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.6
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++.+|-|.|+ |.+|+++++.|.++. .+++.+..+
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~~ 39 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAG-ADVVVHYRS 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCC
Confidence 4568999999 999999999998774 465554443
No 321
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.32 E-value=2.6 Score=36.82 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
..+|.|+|.|-+|.++++.|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999998764
No 322
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.27 E-value=1.3 Score=36.28 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=25.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..++.|+|+ |.+|+.+++.|.++. .++..+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~ 59 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVG 59 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEc
Confidence 368999999 999999999998775 4665553
No 323
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=84.23 E-value=1.9 Score=35.96 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=25.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+.+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~ 36 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKVVIYD 36 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 468999999 999999999999885 5665554
No 324
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.20 E-value=1.4 Score=37.77 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.=..+.|.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~ 56 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDF 56 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 468999999999999999998764 544444443
No 325
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=84.18 E-value=1.5 Score=38.00 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=24.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+||-|.|+ |+ |+.+++.|.+.+ .++++.+..
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTT 32 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEcc
Confidence 37999999 99 999999998775 666655443
No 326
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=83.88 E-value=1.2 Score=38.98 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 8 INGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 8 IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+|.|.+|..+++.|.+.. .++.. .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G-~~V~v-~dr 27 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAG-HPVRV-FDL 27 (288)
T ss_pred CCcccHhHHHHHHHHHhCC-CeEEE-EeC
Confidence 5899999999999998764 56544 344
No 327
>PLN02306 hydroxypyruvate reductase
Probab=83.84 E-value=1.6 Score=40.26 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=24.3
Q ss_pred cEEEEEccChhHHHHHHHHH-cCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVIL-QRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~-~~p~~el~~i 33 (265)
.+|||+|+|.||+++++.+. .. ++++.+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~ 195 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY 195 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE
Confidence 68999999999999999985 55 5777655
No 328
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.76 E-value=1.4 Score=40.04 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.=..+.|.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~ 60 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDD 60 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 479999999999999999998663 544444443
No 329
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=83.24 E-value=1.6 Score=38.62 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHc------CCCeEEEEEeccC
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQ------RDDVELVAVNDPF 37 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~------~p~~el~~i~~~~ 37 (265)
|+++||+|+|+|-+|..-+-.+.+ -|..++..+.|+.
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 667999999999999887755544 3556676666653
No 330
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=83.22 E-value=1.5 Score=40.84 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=26.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.||.|+|+|-+|+.+++.|..+. +.-+.|+.++
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g-~~~I~V~nRt 214 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALA-PKQIMLANRT 214 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 68999999999999999999874 4445555554
No 331
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.12 E-value=2.7 Score=36.95 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.||.|+|+|-+|+.++..|.... +.-+.|.++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G-~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLG-VERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CCEEEEECCC
Confidence 48999999999999999998764 5335555553
No 332
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.95 E-value=2 Score=38.83 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=25.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.=+.+.|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 478999999999999999998764 533344443
No 333
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=82.69 E-value=1.8 Score=39.46 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCccEEEEEccChhHHHHHHHHHc-CCCeEEEEEecc
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~~~ 36 (265)
|+ .+|.|+|+|..|..+++.|.+ .|+.+++.+...
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence 54 699999999999999999976 477888888654
No 334
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=82.62 E-value=1.8 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|+|+|-+|.++++.|.... +.-..+.|
T Consensus 1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD 30 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMG-FGQIHVID 30 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 6899999999999999998764 44344444
No 335
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=82.60 E-value=2.1 Score=37.57 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=26.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|||-|+|+ |++|..+.+.|..+ +.++++...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCc
Confidence 58999999 99999999999975 488887743
No 336
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=82.55 E-value=1.4 Score=43.12 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||.|+|+|-.|..+++.|.... +.=..+.|
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G-Vg~ItlVD 369 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG-VRHITFVD 369 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 469999999999999999999874 54344444
No 337
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.50 E-value=3.4 Score=39.20 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..+++|+|+|-+|+.++..|.... .++...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G-~~V~i~ 361 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAG-AELLIF 361 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC-CEEEEE
Confidence 368999999999999999998775 566544
No 338
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.39 E-value=5.2 Score=35.48 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=22.6
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|+|+|- |.+|+-+++.|.+. +.++...
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~-g~tVtv~ 188 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA-NATVTIA 188 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC-CCEEEEE
Confidence 68999997 99999999999866 3554433
No 339
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=82.22 E-value=2.2 Score=38.78 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=27.5
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
.+||.|.|+ |++|+.+++.|.++. .++.++..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 579999999 999999999999874 67777753
No 340
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=82.22 E-value=1.7 Score=39.95 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~~ 36 (265)
|++.||.|||+|..|.+.++.|.++ ++.+++-+...
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e 37 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE 37 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 7778999999999999999999875 45677777544
No 341
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=82.21 E-value=1.9 Score=38.90 Aligned_cols=33 Identities=12% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|++..|.|||+|.+|..++..|.++ +.+++-+-
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie 33 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLD 33 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHC-CCeEEEEe
Confidence 6678999999999999999999887 46755553
No 342
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=81.99 E-value=1.9 Score=39.57 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=29.3
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|+++.|.|+|+|..|...++.|.+.. +++..+=.
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk 34 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEK 34 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEEec
Confidence 66799999999999999999999886 77776644
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.98 E-value=2.3 Score=38.13 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..||||+|+|.||..++..+..+ ++++...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~l~ 36 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVVAW 36 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEEEE
Confidence 35899999999999999998877 4776644
No 344
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=81.86 E-value=0.78 Score=40.95 Aligned_cols=87 Identities=24% Similarity=0.260 Sum_probs=43.4
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
.+++|+|+|..++..++.+.. +| ++=+.|.++... .+.++.-+ .. .+ + .+...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~--------------~~-~~--~-----~v~~~-- 183 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARL--------------RD-LG--V-----PVVAV-- 183 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHH--------------HC-CC--T-----CEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhh--------------cc-cc--c-----cceec--
Confidence 589999999999999999876 56 888888887522 22221100 00 01 1 12222
Q ss_pred CCCCCCCccccCccEEEEecCCccc-HHHHHHHHhCCC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFTD-KDKAAAHLKGGA 118 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~~-~~~~~~~~~~g~ 118 (265)
.|+++. ..++|+|+.||++... +-.-...++.|.
T Consensus 184 ~~~~~a---v~~aDii~taT~s~~~~P~~~~~~l~~g~ 218 (313)
T PF02423_consen 184 DSAEEA---VRGADIIVTATPSTTPAPVFDAEWLKPGT 218 (313)
T ss_dssp SSHHHH---HTTSSEEEE----SSEEESB-GGGS-TT-
T ss_pred cchhhh---cccCCEEEEccCCCCCCccccHHHcCCCc
Confidence 445443 3689999999997652 222334567786
No 345
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=81.80 E-value=2.1 Score=37.72 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+|||.||.|.+|.-+++.|.+.. +++..-+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG-~~v~v~~ 30 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAG-HEVTVYN 30 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCC-CEEEEEe
Confidence 48999999999999999999874 5554443
No 346
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=81.72 E-value=2.5 Score=39.22 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|.+.||.|+|+|+.|..+++.|. .++++++-|...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~-~~~~~ItlI~~~ 42 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLD-PKKYNITVISPR 42 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhC-cCCCeEEEEcCC
Confidence 34689999999999999998885 346788777544
No 347
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.70 E-value=2.1 Score=37.50 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.||+|+|+|.+|..++..|.++ +.++...
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~ 30 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLV 30 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-CCcEEEE
Confidence 4899999999999999998876 3565544
No 348
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=81.64 E-value=7.8 Score=30.32 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred cCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 92 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 92 ~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
.++|+|+.|++.. .-.-..+++.|. +|+
T Consensus 70 ~~ADIVvsAtg~~--~~i~~~~ikpGa--~Vi 97 (140)
T cd05212 70 HDADVVVVGSPKP--EKVPTEWIKPGA--TVI 97 (140)
T ss_pred hhCCEEEEecCCC--CccCHHHcCCCC--EEE
Confidence 5689999999975 234457788897 666
No 349
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.55 E-value=1.1 Score=40.93 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||.|+|+|-+|.+++..|.... +.=+.+.|
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD 72 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG-VGTITLID 72 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEe
Confidence 468999999999999999998774 43333333
No 350
>PRK07589 ornithine cyclodeaminase; Validated
Probab=81.52 E-value=3.2 Score=37.62 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=51.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecCC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 83 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~d 83 (265)
.+++|+|+|..++..++++..--.++=+.|.++..+ ....+. ..+. +.+ + ++.+. .+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~--~a~~~~-----------~~~~-~~~--~-----~v~~~--~~ 186 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPA--ATAKLA-----------RNLA-GPG--L-----RIVAC--RS 186 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHH--HHHHHH-----------HHHH-hcC--C-----cEEEe--CC
Confidence 579999999999999998775434776777666422 111110 0000 001 1 12222 34
Q ss_pred CCCCCccccCccEEEEecCCccc-HHHHHHHHhCCC
Q 024629 84 PEEIPWAETGAEYVVESTGVFTD-KDKAAAHLKGGA 118 (265)
Q Consensus 84 ~~~~~~~~~~~DvV~~atp~~~~-~~~~~~~~~~g~ 118 (265)
+++. ..++|+|+.||+.... +-.-...++.|.
T Consensus 187 ~~~a---v~~ADIIvtaT~S~~~~Pvl~~~~lkpG~ 219 (346)
T PRK07589 187 VAEA---VEGADIITTVTADKTNATILTDDMVEPGM 219 (346)
T ss_pred HHHH---HhcCCEEEEecCCCCCCceecHHHcCCCc
Confidence 5543 3679999999985321 112335678897
No 351
>PLN02240 UDP-glucose 4-epimerase
Probab=81.50 E-value=2.4 Score=37.89 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=26.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..||-|.|+ |.+|+.+++.|.++. .+|+++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence 479999999 999999999998875 6777764
No 352
>PRK07877 hypothetical protein; Provisional
Probab=81.43 E-value=1.1 Score=44.47 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=21.8
Q ss_pred cCccEEEEecCCcccHHHHH-HHHhCCCc
Q 024629 92 TGAEYVVESTGVFTDKDKAA-AHLKGGAK 119 (265)
Q Consensus 92 ~~~DvV~~atp~~~~~~~~~-~~~~~g~~ 119 (265)
.++|+||||+..+.++-.+. .+.+.|+.
T Consensus 195 ~~~DlVvD~~D~~~~R~~ln~~a~~~~iP 223 (722)
T PRK07877 195 DGLDVVVEECDSLDVKVLLREAARARRIP 223 (722)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 57999999999987776664 45677863
No 353
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.33 E-value=9.3 Score=35.87 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.||+|+|+|..|+.+++.|.+.. .++. +.|.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V~-~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKVT-AFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEEE-EECC
Confidence 58999999999999999998875 5544 3443
No 354
>PLN00198 anthocyanidin reductase; Provisional
Probab=81.23 E-value=2.5 Score=37.66 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.7
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++.+|-|.|+ |++|+.+++.|.++. .+++++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~ 40 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTV 40 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEE
Confidence 4578999999 999999999999874 5776554
No 355
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=81.21 E-value=2.7 Score=35.76 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
++||.|.|+ |.+|+.+++.|.++. .++.++..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVR 49 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEec
Confidence 469999999 999999999998874 67776653
No 356
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.14 E-value=1.7 Score=40.88 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.1
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+..+|+|||||..|...+|.|.++ +++++..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vf 35 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE-GHEVVVF 35 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC-CCCceEE
Confidence 468999999999999999999877 3554443
No 357
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.12 E-value=9.3 Score=36.11 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+.||.|+|+|.+|+.+++.|.+.. .++. +.|+
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G-~~V~-~~D~ 46 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG-CDVV-VADD 46 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC-CEEE-EECC
Confidence 358999999999999999998775 4544 4444
No 358
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.11 E-value=2.5 Score=38.01 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=25.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCe------EEEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDV------ELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~------el~~i 33 (265)
.+||+|+|+ |.+|..++..|..++-+ +++.+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~ 39 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLL 39 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEE
Confidence 479999999 99999999999876533 66555
No 359
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=80.90 E-value=7.8 Score=35.94 Aligned_cols=30 Identities=43% Similarity=0.654 Sum_probs=23.5
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||.|+|.|.+|..++++|.++. .++. +.|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V~-~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEVT-VTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEEE-EEeC
Confidence 5899999999999999998874 5544 3443
No 360
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=80.72 E-value=2.3 Score=43.26 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=30.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC---CCeEEEEEecc
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~---p~~el~~i~~~ 36 (265)
|+++||.|||+|+.|...++.|.++ ++++++.+...
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e 39 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE 39 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 7778999999999999999988653 46888888654
No 361
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.63 E-value=10 Score=35.32 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCC-eEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~-~el~~i~~~ 36 (265)
.||.|+|.|.+|...++.|..+.+ .++.+ .|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~-~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKV-IDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEE-EeC
Confidence 579999999999999999998754 66553 443
No 362
>PRK09126 hypothetical protein; Provisional
Probab=80.51 E-value=2.2 Score=38.76 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
||..+|.|+|+|..|..++..|.++ +++++-+-
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E 33 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIE 33 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEEEe
Confidence 7889999999999999999998876 47765553
No 363
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=80.31 E-value=2.3 Score=37.90 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|+..||||+|+|.+|+.++..+.. .+++++..
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~ 32 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVLK 32 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceEEE
Confidence 556899999999999999998887 45665544
No 364
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=80.27 E-value=2.3 Score=39.70 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=27.9
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~~ 36 (265)
+||.|||+|..|...++.|.++ ++.+++-+...
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 4999999999999999998764 67888888654
No 365
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=80.23 E-value=2.5 Score=38.85 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|.|||+|.+|...+..|.+. +.+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vl 30 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVF 30 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEE
Confidence 5999999999999999999876 4666555
No 366
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.22 E-value=2.4 Score=40.75 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=25.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|||+|+|.+|+++++.|... ++++.+..
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d 170 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIAYD 170 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEC
Confidence 6899999999999999999876 47776654
No 367
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.75 E-value=4.1 Score=37.55 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=79.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCE-EEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~-~i~~~~~~ 82 (265)
-+|-|+|.|.++-.++..+.++-.-+|--++..+...+.+..-+ +...+.+. ..+.-+..+ ...|+ .+..+. .
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL--~~~~~~~~-v~vqn~~h~--~l~G~~~id~~~-~ 75 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEAL--ARSDGLFE-VSVQNEQHQ--ALSGECTIDHVF-Q 75 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHH--HhCCCEEE-Eeecchhhh--hhcCeEEhhHhh-c
Confidence 48999999999999999999886555544444332333221111 11111111 110000000 01121 122111 3
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHH----HHHhCCCcEEEE-cCC--C---------C-C-CceEE-----ee---
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAA----AHLKGGAKKVII-SAP--S---------K-D-APMFV-----VG--- 136 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~----~~~~~g~~~vvi-S~~--~---------~-~-~~~~v-----~g--- 136 (265)
+.+++ ..+-|.+|.|+|...-.+... +.+ .+.|++|+ |.. + + . +..++ ||
T Consensus 76 ~~~~i---~g~WdtlILavtaDAY~~VL~ql~~~~L-~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr 151 (429)
T PF10100_consen 76 DYEEI---EGEWDTLILAVTADAYLDVLQQLPWEVL-KRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTR 151 (429)
T ss_pred CHHHh---cccccEEEEEechHHHHHHHHhcCHHHH-hhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccce
Confidence 55555 255699999999875444333 223 34566665 543 1 0 1 22222 12
Q ss_pred eC---------cccccCCCCeEEcCCccchhhhhHHHHHHHhcCeeE
Q 024629 137 VN---------ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVE 174 (265)
Q Consensus 137 vn---------~~~i~~~~~~V~~p~C~~ta~~l~L~pL~~~~~i~~ 174 (265)
+- ...++ .++--...+.....+--|.-+++..||+-
T Consensus 152 ~~d~~~~~~vlt~~vK--~kiYigSt~~~s~~~~~l~~~~~~~gI~~ 196 (429)
T PF10100_consen 152 WSDGEQPNRVLTTAVK--KKIYIGSTHSNSPELDKLCRLLAQLGIQL 196 (429)
T ss_pred eccCCCcceehhhhhh--ceEEEEeCCCCChHHHHHHHHHHHcCCeE
Confidence 11 11122 34544445666667777888888888874
No 368
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.73 E-value=8.3 Score=36.21 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=23.5
Q ss_pred ccEEEEEccChhHHH-HHHHHHcCCCeEEEE
Q 024629 3 KVKIGINGFGRIGRL-VARVILQRDDVELVA 32 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~-l~r~L~~~p~~el~~ 32 (265)
..||.|+|.|.+|.. ++|+|.++. .++.+
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G-~~V~~ 36 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLG-YKVSG 36 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCC-CeEEE
Confidence 358999999999999 799998874 66543
No 369
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.64 E-value=11 Score=35.23 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=25.0
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..+|.|+|.|.+|...++.|.++. .+++..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~ 34 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG-AEVAAY 34 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 358999999999999999999885 666544
No 370
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=79.56 E-value=2.8 Score=39.12 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=28.9
Q ss_pred CCccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i 33 (265)
|+++.|.|||+|-+|..+.+.|.+. |+.++.-+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~ll 34 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALL 34 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEE
Confidence 7789999999999999999999976 76777666
No 371
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=79.46 E-value=2.1 Score=37.58 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
..||+|+|+ |-||+-|--+|..+|.+.-.++.|..
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~ 63 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIA 63 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcCcccceeeeeecc
Confidence 589999999 99999998888888988666666653
No 372
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.42 E-value=8.5 Score=33.96 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=22.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+|.|+|. +.+|+-++.+|.++. ..++...
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~g-atVtv~~ 189 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKN-ASVTILH 189 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCC-CeEEEEe
Confidence 68999999 449999999988663 5444433
No 373
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=79.26 E-value=2.5 Score=38.87 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+||.|||+|..|..++..|.+++.++++.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~ 30 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLF 30 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999998765554433
No 374
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=79.25 E-value=13 Score=33.69 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=25.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
-+|+|+|+|-.|-..+..+.... .+++++....
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~ 200 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSE 200 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCCh
Confidence 58999999877777777666564 8999997653
No 375
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.19 E-value=2.7 Score=40.06 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.0
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++.+|.|||||..|...+|.|.+. +++++.+=++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEAR 47 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEAR 47 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEecc
Confidence 467999999999999999999987 4776666444
No 376
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.06 E-value=4 Score=30.13 Aligned_cols=30 Identities=30% Similarity=0.643 Sum_probs=23.9
Q ss_pred EEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 6 IGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|-|+|+|.+|+++++.|.+. +.+++.+...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence 56999999999999999984 5677777654
No 377
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=79.02 E-value=1.8 Score=38.77 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=55.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 81 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~ 81 (265)
...+-|.|+ ||.|+.+++.|..+. ... ++..++ .. ++..+ ..+.| .+...+..
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g-~~~-aLAgRs-~~-kl~~l---------------~~~LG-------~~~~~~p~ 59 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREG-LTA-ALAGRS-SA-KLDAL---------------RASLG-------PEAAVFPL 59 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcC-Cch-hhccCC-HH-HHHHH---------------HHhcC-------ccccccCC
Confidence 367889999 999999999998773 333 444443 11 11100 00111 00111111
Q ss_pred CCCCCCCccccCccEEEEecCCcc--cHHHHHHHHhCCCcEEEEcCC
Q 024629 82 RNPEEIPWAETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP 126 (265)
Q Consensus 82 ~d~~~~~~~~~~~DvV~~atp~~~--~~~~~~~~~~~g~~~vviS~~ 126 (265)
.+|..++-....+++|+.|.++++ ...+++.++..|..-.+||+.
T Consensus 60 ~~p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 60 GVPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred CCHHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCCeeecccc
Confidence 112111111367899999999875 556788888888755556544
No 378
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.50 E-value=11 Score=33.92 Aligned_cols=32 Identities=13% Similarity=0.449 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
-+|.|.|+|.+|..++.++... +.+++.+...
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~ 216 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSS 216 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3788988899999999887766 4676665443
No 379
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.48 E-value=3.7 Score=34.22 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=25.7
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.++-|.|+ |.+|+.+++.|.++ +.+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEee
Confidence 68999999 99999999999987 56766664
No 380
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=78.37 E-value=3.8 Score=33.95 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=24.6
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 6 V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
|-|.|+ |++|..+++.|.+.. .+++.+....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~ 32 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSS 32 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCS
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccccc
Confidence 679999 999999999999885 4556665543
No 381
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.15 E-value=6.5 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.640 Sum_probs=25.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
.+|-|+|+|++|+.+.|.|.++ +.+++.+-.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~ 431 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLER 431 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEEC
Confidence 4799999999999999999876 366666643
No 382
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=77.93 E-value=3.4 Score=40.80 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=28.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
++||-|.|+ |++|+.|++.|.++.+.+++++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 468999999 999999999999865588888854
No 383
>PRK14851 hypothetical protein; Provisional
Probab=77.80 E-value=2.6 Score=41.72 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD 26 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p 26 (265)
..||+|+|+|-+|..++..|..-.
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G 66 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG 66 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC
Confidence 469999999999999999998764
No 384
>PRK08163 salicylate hydroxylase; Provisional
Probab=77.75 E-value=3.3 Score=37.71 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..+|.|||+|..|..++..|.++ ++++.-+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEE
Confidence 57999999999999999988876 4665444
No 385
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=77.69 E-value=1.9 Score=38.77 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred cEEEEEccChhHHHHHHHHHcC
Q 024629 4 VKIGINGFGRIGRLVARVILQR 25 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~ 25 (265)
.||||+|+|+||+.+++.|..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 6999999999999999988864
No 386
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=77.68 E-value=2.4 Score=38.23 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=22.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDD 27 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~ 27 (265)
..+|||+|+|.+|+-+++-|.++.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc
Confidence 5899999999999999999998864
No 387
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.58 E-value=3.5 Score=35.06 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=27.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++|.|.|+ |.+|+.+++.|.++ ..++.+++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~ 33 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN 33 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence 37999999 99999999999998 5777777654
No 388
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=77.38 E-value=3.1 Score=39.38 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|||+|.|.+|..+++.|.++. ++|..- ++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~v~-dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKISVY-NR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEEEE-eC
Confidence 48999999999999999999885 565544 44
No 389
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.22 E-value=11 Score=35.90 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~ 32 (265)
..||.|+|.|..|..++++|.++. .++.+
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G-~~v~~ 35 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG-ARLRV 35 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC-CEEEE
Confidence 358999999999999999999875 66654
No 390
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=77.10 E-value=3.9 Score=36.89 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.6
Q ss_pred CccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 2 GKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++.+|.|||+|.+|...+..|.++.. +++.+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie 34 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLE 34 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEe
Confidence 46899999999999999999998753 666554
No 391
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=77.07 E-value=18 Score=28.16 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=29.8
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+..+++ ..+|+|-.--++....+.++++++.|+|.++.
T Consensus 66 sL~dIp---e~IDiVdvFR~~e~~~~i~~eal~~~~kv~W~ 103 (140)
T COG1832 66 SLADIP---EPIDIVDVFRRSEAAPEVAREALEKGAKVVWL 103 (140)
T ss_pred cHHhCC---CCCcEEEEecChhhhHHHHHHHHhhCCCeEEE
Confidence 455564 56898877788888999999999999876665
No 392
>PRK08013 oxidoreductase; Provisional
Probab=77.03 E-value=3.5 Score=37.85 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.0
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|+..+|.|+|+|.+|..++..|.++ +++++-+-
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE 33 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLE 33 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEe
Confidence 6678999999999999999888765 57765553
No 393
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.88 E-value=13 Score=34.59 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~ 32 (265)
.+|.|+|.|..|+..+++|.++. .++.+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~ 34 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRV 34 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEE
Confidence 57999999999999999888774 56544
No 394
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=76.73 E-value=11 Score=35.09 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=28.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCC--CeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p--~~el~~i~~~ 36 (265)
.|+.|+|+|..|.++++.+.++| +.+++++.+.
T Consensus 126 ~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd 160 (445)
T TIGR03025 126 RRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDD 160 (445)
T ss_pred CcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeC
Confidence 57999999999999999998876 4888888775
No 395
>PRK15076 alpha-galactosidase; Provisional
Probab=76.71 E-value=2.1 Score=39.98 Aligned_cols=12 Identities=33% Similarity=0.260 Sum_probs=11.0
Q ss_pred cEEEEEccChhH
Q 024629 4 VKIGINGFGRIG 15 (265)
Q Consensus 4 ~~V~IiG~G~~G 15 (265)
+||+|+|+|.+|
T Consensus 2 ~KIaIIGaGsvg 13 (431)
T PRK15076 2 PKITFIGAGSTV 13 (431)
T ss_pred cEEEEECCCHHH
Confidence 699999999987
No 396
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=76.52 E-value=4 Score=36.73 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=53.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCC-hhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIT-TDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~-~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
-.++|||+|..++-.++.+..--+++=+.|.++..+ .+..+.-+ . ...+ . .+....
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l---------~-----~~~~-------~--~v~a~~ 187 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL---------R-----KRGG-------E--AVGAAD 187 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH---------H-----hhcC-------c--cceecc
Confidence 468999999999999999987655777777777433 22211000 0 0001 0 111113
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCC
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGA 118 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~ 118 (265)
+.++. ..++|+|+-||+... +-.....++.|.
T Consensus 188 s~~~a---v~~aDiIvt~T~s~~-Pil~~~~l~~G~ 219 (330)
T COG2423 188 SAEEA---VEGADIVVTATPSTE-PVLKAEWLKPGT 219 (330)
T ss_pred CHHHH---hhcCCEEEEecCCCC-CeecHhhcCCCc
Confidence 44433 368999999999754 444556778886
No 397
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=76.37 E-value=11 Score=33.72 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=22.7
Q ss_pred cEEEEEccChhHHHHHHHHHc-CCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQ-RDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~ 34 (265)
-+|.|+|+|.+|..++.++.. ....+++++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 379999999999988887765 3445565554
No 398
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=76.24 E-value=7.5 Score=33.74 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.++.|+|+|-+|+.+++.|.... .++...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~~ 147 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD-CNVIIAN 147 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEe
Confidence 47999999999999999998775 5655443
No 399
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=76.23 E-value=3.6 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+.+|.|+|+|.+|.+++..|.++. +++.-+-
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G-l~V~LiE 32 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG-VPVELYE 32 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEE
Confidence 468999999999999999998763 5555443
No 400
>PRK06847 hypothetical protein; Provisional
Probab=76.22 E-value=3.7 Score=37.01 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=25.4
Q ss_pred CC-ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|. +.+|.|||+|..|..++..|.++ +++++.+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~ 33 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRA-GIAVDLV 33 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 53 67899999999999999998876 4665444
No 401
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=75.96 E-value=3.8 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=26.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|.+.+|.|+|+|..|..++-.|.+.. ++++-+-
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G-~~v~l~E 33 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQG-RSVAVIE 33 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCC-CcEEEEc
Confidence 66679999999999999999888763 6665553
No 402
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=75.91 E-value=11 Score=33.69 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=60.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEEEecC
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 82 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~~~~~ 82 (265)
-||-|-|. |.-|....+...+.. -++|+=..+...++ .+...| ++++ .
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~yg-t~iv~GV~Pgkgg~--------------------------~v~~~G--vpvy--~ 78 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEYG-TKMVGGVNPKKAGT--------------------------THLKHG--LPVF--A 78 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHhC-CcEEEEECCCCCCc--------------------------eEecCC--cccc--C
Confidence 58999999 999999999988874 55665555532111 110001 3344 2
Q ss_pred CCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 83 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 83 d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+.++++- ..++|+++.+.|.....+.+.++.++|+|.+|+
T Consensus 79 sv~ea~~-~~~~D~avI~VPa~~v~dai~Ea~~aGI~~~Vi 118 (317)
T PTZ00187 79 TVKEAKK-ATGADASVIYVPPPHAASAIIEAIEAEIPLVVC 118 (317)
T ss_pred CHHHHhc-ccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444421 124899999999999999999999999998776
No 403
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=75.90 E-value=3.8 Score=36.30 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=23.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~ 31 (265)
+.|||-+|.|.+|..++..|.++. +.|+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G-~kVt 62 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAG-YKVT 62 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcC-CEEE
Confidence 579999999999999999999875 4443
No 404
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.89 E-value=12 Score=38.01 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=25.2
Q ss_pred CC-ccEEEEEccChhHHHH-HHHHHcCCCeEEEEEecc
Q 024629 1 MG-KVKIGINGFGRIGRLV-ARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~-~~~V~IiG~G~~G~~l-~r~L~~~p~~el~~i~~~ 36 (265)
|| +.+|.|+|.|.+|... +++|.++. .++.+ .|.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-~~V~~-sD~ 36 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-YSVSG-SDL 36 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-CeEEE-ECC
Confidence 54 4579999999999998 88888764 66543 443
No 405
>PRK09897 hypothetical protein; Provisional
Probab=75.71 E-value=3.6 Score=39.57 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=23.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i 33 (265)
|.+|+|||+|..|..+++.|.++ +.++|.-+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lf 32 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIF 32 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEE
Confidence 35999999999999999988765 33554444
No 406
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.59 E-value=14 Score=34.42 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=24.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..+|.|+|+|.+|+..++.|.+.. .+++..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G-~~V~~~ 34 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG-ANVTVN 34 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC-CEEEEE
Confidence 358999999889999999998874 665544
No 407
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=75.39 E-value=25 Score=31.40 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
-+|.|+|+|.+|...+.++.... .+++++..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~ 204 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNR 204 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CeEEEEec
Confidence 47999999999999998777664 67777654
No 408
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.23 E-value=5.5 Score=33.43 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=27.6
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+..++-|.|+ |.+|+++++.|.++. .+++.+..+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCC
Confidence 44468999999 999999999999885 566654444
No 409
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.19 E-value=12 Score=35.27 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=24.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||.|+|+|..|...+|.|. . +.+++ +.|
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~-g~~v~-v~D 35 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-N-KYDVI-VYD 35 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-C-CCEEE-EEC
Confidence 368999999999999999998 4 56654 444
No 410
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=75.08 E-value=4.3 Score=35.57 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=26.0
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+|.|.|+ |++|+.+++.|.+++ .++.++...
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEEec
Confidence 7999999 999999999999875 577766543
No 411
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=75.00 E-value=3.9 Score=35.92 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.8
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEE
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i 33 (265)
||-|.|+ |++|+.+++.|.++. +++++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~ 29 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIAL 29 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEe
Confidence 8999999 999999999998775 44444
No 412
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=74.88 E-value=9.2 Score=33.67 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.9
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccCCChhhh
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYM 43 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~ 43 (265)
.++.|+|+|=+++.++..|.++.--+++-++......+.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~L 166 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEEL 166 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 5799999999999999999988534566666543334443
No 413
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=74.87 E-value=6.9 Score=33.65 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=30.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
-.||+|-|+|.+|..+++.|.+. +..++++.|..
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~ 65 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSS 65 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 47999999999999999999988 59999997754
No 414
>PRK06184 hypothetical protein; Provisional
Probab=74.63 E-value=4.1 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=27.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|.+.+|.|||+|.+|..++..|.++ +++++-+-
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE 33 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARR-GVSFRLIE 33 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEe
Confidence 7788999999999999999998877 47755553
No 415
>PRK11445 putative oxidoreductase; Provisional
Probab=74.56 E-value=3.9 Score=36.81 Aligned_cols=30 Identities=23% Similarity=0.588 Sum_probs=24.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|+.|.|+|+|..|..++..|.++ ++++.+-
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~--~~V~liE 30 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK--MKVIAID 30 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc--CCEEEEE
Confidence 36899999999999999998876 6665554
No 416
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=74.14 E-value=4.8 Score=36.80 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=25.8
Q ss_pred CccEEEEEccChhHHHHHHHHHcC-CCeEEEEE
Q 024629 2 GKVKIGINGFGRIGRLVARVILQR-DDVELVAV 33 (265)
Q Consensus 2 ~~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i 33 (265)
|+..|.|||+|.+|..++..|.+. |+.+++-+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~ll 33 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVL 33 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEE
Confidence 147999999999999999999874 56666555
No 417
>PLN02778 3,5-epimerase/4-reductase
Probab=73.95 E-value=3.7 Score=36.12 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~ 31 (265)
++||-|.|+ |++|+.|++.|.++. .+++
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 479999999 999999999998874 4554
No 418
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=73.93 E-value=5.3 Score=35.54 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=26.1
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCC-CeEEEEEe
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRD-DVELVAVN 34 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p-~~el~~i~ 34 (265)
+..+|-|.|+ |.+|+.+++.|.++. ..+++.+.
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4578999999 999999999998773 35665553
No 419
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=73.90 E-value=4.5 Score=36.17 Aligned_cols=32 Identities=38% Similarity=0.439 Sum_probs=25.2
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.||-|.|+ |++|+.+++.|.++. .+++.+.++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET-SDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEec
Confidence 58999999 999999999999874 444444443
No 420
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=73.90 E-value=3.9 Score=35.55 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=25.0
Q ss_pred EEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEe
Q 024629 5 KIGINGF-GRIGRLVARVILQR-DDVELVAVN 34 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~-p~~el~~i~ 34 (265)
||.|.|+ |++|+.+++.|.++ +..+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 5889999 99999999999876 357887664
No 421
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=73.86 E-value=23 Score=28.34 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=16.8
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024629 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~ 25 (265)
.+|.|+|. +.+|+-+..+|.++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~ 59 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK 59 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT
T ss_pred CEEEEECCcCCCChHHHHHHHhC
Confidence 57888888 78888888888876
No 422
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.83 E-value=5.8 Score=33.17 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..+|.|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 468999999 999999999999874 67766654
No 423
>PRK14982 acyl-ACP reductase; Provisional
Probab=73.73 E-value=5.4 Score=36.11 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=24.4
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCe-EEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDV-ELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~-el~~i~ 34 (265)
..+|.|+|+ |.+|+++++.|..+.++ +++.++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~ 188 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA 188 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc
Confidence 468999999 99999999999754223 455443
No 424
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=73.62 E-value=3.8 Score=35.24 Aligned_cols=29 Identities=31% Similarity=0.638 Sum_probs=24.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+++|.||.|++|.-+.+.|.++. .++++-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g-hdvV~y 29 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG-HDVVGY 29 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC-CeEEEE
Confidence 47999999999999999999885 666654
No 425
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.48 E-value=13 Score=32.71 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcC
Q 024629 4 VKIGINGF-GRIGRLVARVILQR 25 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~ 25 (265)
.+|+|+|. |.+|+-++.+|.+.
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~ 181 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK 181 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC
Confidence 58999999 99999999988865
No 426
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=73.41 E-value=5 Score=32.43 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=24.3
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
||.|||+|..|...+..|.+ ++.++.-+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEE
Confidence 68999999999999999984 46887777
No 427
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=73.40 E-value=5 Score=35.56 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.3
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|||-|.|+ |.+|+.+++.|.+.. .+++.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 37999999 999999999998774 6777764
No 428
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=73.12 E-value=4.9 Score=37.94 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=24.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..+|+|||+|..|...++.|.+.. ++++.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEEE
Confidence 589999999999999999888764 565544
No 429
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.74 E-value=4 Score=37.36 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=24.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||.|+|+|-+|.+++..|.... +.=..+.|
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD 166 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAG-VGTLGIVD 166 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEe
Confidence 468999999999999999998774 43333333
No 430
>PRK07411 hypothetical protein; Validated
Probab=72.72 E-value=4 Score=37.63 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=25.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.=..+.|.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD~ 70 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVDF 70 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CCEEEEECC
Confidence 468999999999999999988763 554555554
No 431
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=72.53 E-value=5 Score=36.77 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=24.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..+|.|+|+|.+|..++-.|.++ +++++-+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~vi 33 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVI 33 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEE
Confidence 57899999999999999888776 5776444
No 432
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=72.26 E-value=8.1 Score=33.89 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=25.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.++.|+|+|-+|+.++..|.... ++-+.|..++
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G-~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLG-VTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 57999999999999999998774 5444444553
No 433
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=72.21 E-value=47 Score=27.85 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=25.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..+|.|+|.|-+|..=+++|.+-. .++..+...
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~ 44 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPE 44 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCC
Confidence 468999999999999999988764 555555443
No 434
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=72.14 E-value=5.1 Score=36.62 Aligned_cols=31 Identities=16% Similarity=0.337 Sum_probs=25.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+++|.|+|+|.+|..++-+|.++. ++++-+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~E 32 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-LDVTLLE 32 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-CcEEEEc
Confidence 478999999999999999998886 6665553
No 435
>PRK12827 short chain dehydrogenase; Provisional
Probab=72.11 E-value=6.5 Score=32.79 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=26.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
.+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEc
Confidence 468999999 999999999999874 5666654
No 436
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=72.03 E-value=5.3 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=22.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+.||+|||+|..|...++.|.+. +++++..-
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~-g~~~~~fE 31 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEE-GLEVTCFE 31 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHT-T-EEEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCeEEe
Confidence 36999999999999999999877 58887663
No 437
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=71.98 E-value=5.3 Score=39.40 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=27.3
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcC-CCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQR-DDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~-p~~el~~i~ 34 (265)
.+||-|.|+ |++|+.+++.|.++ ++.+++++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence 479999999 99999999999876 568887764
No 438
>PLN02214 cinnamoyl-CoA reductase
Probab=71.92 E-value=6.9 Score=35.09 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=26.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
+.+|-|.|+ |++|+.+++.|.++. .+++++..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeC
Confidence 468999999 999999999999874 67776653
No 439
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=71.78 E-value=5.2 Score=34.97 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.7
Q ss_pred EEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 6 IGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 6 V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|-|.|+ |++|+.|++.|.++. .+++.+.+.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecC
Confidence 678999 999999999999885 566666655
No 440
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=71.74 E-value=26 Score=33.62 Aligned_cols=33 Identities=18% Similarity=0.034 Sum_probs=25.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEeccC
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPF 37 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~~ 37 (265)
.-||.|+|+|.+|...+..+.... .+ +.+.|..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~ 197 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTR 197 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCC
Confidence 368999999999999999888775 45 4444543
No 441
>PRK06180 short chain dehydrogenase; Provisional
Probab=71.61 E-value=7.3 Score=33.53 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
+.++-|.|+ |.+|+.+++.|.++ +.+++.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeC
Confidence 467999999 99999999999887 477766654
No 442
>PRK07023 short chain dehydrogenase; Provisional
Probab=71.58 E-value=6.8 Score=32.84 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=25.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEEe
Confidence 48999999 999999999999874 7776654
No 443
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.53 E-value=23 Score=32.98 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.2
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
-.|.|+|.|.+|..++++|.+.. .++.+ .|.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G-~~v~~-~D~ 37 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQG-IPFAV-MDS 37 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCC-CeEEE-EeC
Confidence 46899999999999999998874 55543 443
No 444
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.51 E-value=5.9 Score=37.48 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
-.+|+|+|+|.+|+.+++.+.... ++++..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~ 283 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG-ARVVVT 283 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 368999999999999999998774 675544
No 445
>PRK07208 hypothetical protein; Provisional
Probab=71.51 E-value=5.2 Score=37.57 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 1 m~~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|++.+|.|||+|..|...+..|.+. +++++-+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~ 33 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVL 33 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEE
Confidence 3478999999999999999998876 3565544
No 446
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=71.50 E-value=10 Score=34.13 Aligned_cols=15 Identities=20% Similarity=-0.133 Sum_probs=12.4
Q ss_pred cCccEEEEecCCccc
Q 024629 92 TGAEYVVESTGVFTD 106 (265)
Q Consensus 92 ~~~DvV~~atp~~~~ 106 (265)
.++|+||.|+|....
T Consensus 80 a~ADVVIL~LPd~aa 94 (341)
T TIGR01724 80 KHGEIHVLFTPFGKG 94 (341)
T ss_pred hCCCEEEEecCCHHH
Confidence 579999999997653
No 447
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=71.39 E-value=5.2 Score=34.48 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.8
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
||.|.|+ |++|+.+++.|.++ +.++..+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCC
Confidence 6889999 99999999999887 467766643
No 448
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=71.38 E-value=8.5 Score=37.06 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=24.0
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+|-|-|+ |-+|.|+.+.+.+. +-+-+-+.++
T Consensus 251 K~vLVTGagGSiGsel~~qil~~-~p~~i~l~~~ 283 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKF-NPKEIILFSR 283 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhc-CCCEEEEecC
Confidence 68999999 99999999998876 2333344444
No 449
>PLN02686 cinnamoyl-CoA reductase
Probab=71.35 E-value=6.9 Score=35.53 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=27.8
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++.+|-|.|+ |.+|+.+++.|.++ +.+++++...
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~ 86 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDT 86 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4678999999 99999999999887 4677665543
No 450
>PRK10637 cysG siroheme synthase; Provisional
Probab=71.33 E-value=92 Score=29.32 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
..||-|+|+|.++.+=++.|.+.. .+++.|
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~g-a~v~vi 41 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAG-ARLTVN 41 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 479999999999988777777653 454444
No 451
>PRK06914 short chain dehydrogenase; Provisional
Probab=71.22 E-value=8.1 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=28.4
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
|+..++-|.|+ |.+|+.+++.|.++ +.+++.+...
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r~ 36 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMRN 36 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeCC
Confidence 66567899999 99999999999987 4777776543
No 452
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=71.20 E-value=5.8 Score=36.00 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=24.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|++|.|+|+|.+|..++..|.++ ++++.-+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~ 30 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-GIKTTIF 30 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-CCeEEEe
Confidence 46899999999999999988776 4665444
No 453
>PRK14852 hypothetical protein; Provisional
Probab=71.17 E-value=5 Score=41.25 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=24.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||+|+|.|-+|.+++..|..-. +.=..+.|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG-VG~I~L~D 363 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG-IGNFNLAD 363 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC-CCeEEEEc
Confidence 468999999999999999988764 43334444
No 454
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=71.03 E-value=6.9 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
.+||-|.|+ |++|+.+++.|.++. .+++++..
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence 468999999 999999999999885 67776643
No 455
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=70.97 E-value=5.9 Score=36.06 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=26.2
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~ 34 (265)
|.+|.|+|+|..|..++..|.++ |+++++-+-
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE 33 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVD 33 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEe
Confidence 36899999999999999999887 467765553
No 456
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=70.70 E-value=6.2 Score=34.67 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|.|||+|..|..++..|.++. +++.-+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G-~~v~i~ 30 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG-IDVTII 30 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT-CEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcc-cccccc
Confidence 58999999999999999999884 665444
No 457
>PRK06182 short chain dehydrogenase; Validated
Probab=70.69 E-value=8.4 Score=33.00 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|.+.++-|.|+ |.+|+++++.|.++. .+++.+..
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r 35 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQG-YTVYGAAR 35 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 66678999999 999999999998764 67766643
No 458
>PLN02572 UDP-sulfoquinovose synthase
Probab=70.68 E-value=6.3 Score=36.92 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=26.1
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
++||-|.|+ |.+|+.+++.|.+.. .+++.+.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRG-YEVAIVD 78 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEe
Confidence 468999999 999999999999874 6776653
No 459
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=70.66 E-value=6.5 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=24.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|.+|.++++.|.... +.-..+.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCC
Confidence 369999999999999999998764 433334443
No 460
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=70.60 E-value=7.6 Score=35.40 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.4
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.+.++-|.|+ |+.|+.+++.|.++....-+.+.|.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~ 38 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDK 38 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEecc
Confidence 4789999999 9999999999998853333334443
No 461
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=70.52 E-value=6.3 Score=35.78 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=25.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..+|.|||+|.+|..++..|.++ +++++-+-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE 37 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARA-GASVALVA 37 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCeEEEEe
Confidence 46899999999999999988876 47765553
No 462
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=70.24 E-value=8.4 Score=30.84 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=25.9
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..||.|+|+|.+|...++.+...+ ++++..-.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~ 51 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDE 51 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEeccC
Confidence 479999999999999999999996 77666644
No 463
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.22 E-value=7.8 Score=32.29 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=27.2
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++.++-|.|+ |.+|.++++.|.++ +.+++.+.++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r 38 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDI 38 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3468999999 99999999999877 4777666344
No 464
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=70.16 E-value=6.6 Score=34.07 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
+|-|.|+ |++|+.|++.|.++ +.++.++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence 4899999 99999999999987 5777777643
No 465
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.98 E-value=5.9 Score=36.49 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.1
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
|||.|+|.||+|....-.|.++. -+++.+-
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-HeVv~vD 30 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-HEVVCVD 30 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-CeEEEEe
Confidence 58999999999999988888774 6777773
No 466
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=69.79 E-value=5.1 Score=37.34 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.6
Q ss_pred cEEEEEccChhHHHHH
Q 024629 4 VKIGINGFGRIGRLVA 19 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~ 19 (265)
+||+|+|+|.+|..+.
T Consensus 1 ~KIaIIGaGs~G~a~a 16 (423)
T cd05297 1 IKIAFIGAGSVVFTKN 16 (423)
T ss_pred CeEEEECCChHHhHHH
Confidence 5899999999998744
No 467
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=69.77 E-value=11 Score=35.45 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=28.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCC--CeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRD--DVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p--~~el~~i~~~ 36 (265)
+.|+.|+|+|-.|+++++.+.++| +++++++.+.
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd 160 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDT 160 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeC
Confidence 357999999999999999998765 4788888775
No 468
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=69.63 E-value=6.9 Score=35.61 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+.+|.|+|+|.+|..++..|.++ +++++-+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~-G~~v~li 35 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA-GLSVALV 35 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCEEEEE
Confidence 57999999999999999988876 4775444
No 469
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=69.61 E-value=5.7 Score=37.31 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=26.9
Q ss_pred cEEEEEccChhHHHHHHHHHcC-CCeEEEEEec
Q 024629 4 VKIGINGFGRIGRLVARVILQR-DDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~ 35 (265)
++|+|+|+|..|...+..|.++ |+++++-.-.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~ 33 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEA 33 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEec
Confidence 4799999999999999999876 7788776643
No 470
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.59 E-value=8 Score=34.61 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.6
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
+.+||-|.|+ |++|..+++.|.+.. .+++++.
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~ 35 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYS 35 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEe
Confidence 3478999999 999999999999874 6776664
No 471
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=69.56 E-value=18 Score=35.44 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=56.3
Q ss_pred ccEEEEEcc----ChhHHHHHHHHHcCCCeEEEEEeccCCChhhhhhheeeecccCcccccceeeeCCceEEECCEEEEE
Q 024629 3 KVKIGINGF----GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 78 (265)
Q Consensus 3 ~~~V~IiG~----G~~G~~l~r~L~~~p~~el~~i~~~~~~~~~~a~l~~~~~~~~~~~~~~v~~~~~~~l~~~g~~i~~ 78 (265)
..-|+|+|+ |.+|.+.++.|.+..+=++.-|+-. |+.. .| ++.
T Consensus 10 p~svavigas~~~~~vg~~i~~nL~~~g~g~i~PVnp~------------~~~v-------------------~G--~~a 56 (598)
T COG1042 10 PKSIAVIGASERPGKLGYEILRNLLEYGQGKIYPVNPK------------YDEV-------------------LG--VKA 56 (598)
T ss_pred CceEEEeeccCCcchhHHHHHHHHHhcCCCceEecCcc------------cccc-------------------cc--ccc
Confidence 457999998 5699999999987753222222211 1111 11 112
Q ss_pred EecCCCCCCCccccCccEEEEecCCcccHHHHHHHHhCCCcEEEE
Q 024629 79 FGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 123 (265)
Q Consensus 79 ~~~~d~~~~~~~~~~~DvV~~atp~~~~~~~~~~~~~~g~~~vvi 123 (265)
+ .+..+++ ...|+.|-++|.....+...++-++|++..|+
T Consensus 57 y--~s~~~lp---~~~dlav~~v~~~~~~~i~~~~~~kGv~~~i~ 96 (598)
T COG1042 57 Y--TSVADLP---DAPDLAVIVVPAKVVPEIVHELGEKGVKGAIV 96 (598)
T ss_pred c--chHhhCC---CCCCeeEEEechhhhHHHHHHhhccCCceEEE
Confidence 1 2345553 56899999999999999999999999988877
No 472
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=69.33 E-value=20 Score=32.30 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=24.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
-+|.|+|.|.+|..+++++... +.+++.+.+.
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~ 213 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVISSS 213 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 4688998899999998877766 4677666543
No 473
>PRK05868 hypothetical protein; Validated
Probab=69.19 E-value=6.4 Score=35.79 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=23.6
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
|.+|.|+|+|..|..++..|.++ ++++..+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G~~v~vi 30 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-GYSVTMV 30 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEE
Confidence 35999999999999999888765 4664444
No 474
>PTZ00188 adrenodoxin reductase; Provisional
Probab=68.92 E-value=7.6 Score=37.02 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.4
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~ 31 (265)
..||+|||+|..|...++.|..+.+.++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~Vt 67 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVD 67 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEE
Confidence 47999999999999999866654445533
No 475
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.82 E-value=18 Score=31.84 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.5
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~ 31 (265)
.+|.|+|. +.+|+-+..+|.++ +..+.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~atVt 186 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-GATVT 186 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEE
Confidence 57889999 66699988888765 24443
No 476
>PRK12829 short chain dehydrogenase; Provisional
Probab=68.54 E-value=8.7 Score=32.44 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=26.6
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..++-|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r 43 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDV 43 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 478999999 999999999999885 57665553
No 477
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=68.37 E-value=7.1 Score=34.86 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=22.7
Q ss_pred EEEEEcc-ChhHHHHHHHHHcCCCeEEEE
Q 024629 5 KIGINGF-GRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 5 ~V~IiG~-G~~G~~l~r~L~~~p~~el~~ 32 (265)
||-|.|+ |.+|..+++.|.+++.-.++.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~ 30 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVN 30 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEE
Confidence 8999999 999999999998875323433
No 478
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=68.29 E-value=16 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.3
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeE-EEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVE-LVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~e-l~~i 33 (265)
-+|.|+|+|.+|...+.++... +.+ ++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~ 151 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA-GAARVVAA 151 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEE
Confidence 3789999999999998887766 465 5544
No 479
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=68.20 E-value=10 Score=31.40 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=26.8
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..++-|.|+ |.+|+++++.|.++ +.+++.+..+
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~ 38 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ-GANVVINYAS 38 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCC
Confidence 368999999 99999999999877 4676665544
No 480
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.19 E-value=7.2 Score=36.18 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=26.5
Q ss_pred EEEEEccChhHHHHHHHHHcC-CCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQR-DDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~~~ 36 (265)
||.|+|+|..|.+.++.|.++ ++.+++-+...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~ 34 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC
Confidence 899999999999999988765 56777777543
No 481
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.09 E-value=9.5 Score=32.16 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=25.7
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEe
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~ 34 (265)
..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~ 38 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG-AAVAIAD 38 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEe
Confidence 467999999 999999999999885 5766553
No 482
>PLN02494 adenosylhomocysteinase
Probab=67.83 E-value=7.8 Score=36.63 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=24.6
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
.+|+|+|+|.+|+.+++.+... +++++.+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VIV~ 283 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVIVT 283 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE
Confidence 6899999999999999999877 4676554
No 483
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.83 E-value=10 Score=31.66 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.0
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
..++-|.|+ |.+|+++++.|.++. .+++.+..
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r 37 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDR 37 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC
Confidence 368999999 999999999999874 67655543
No 484
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=67.68 E-value=7.2 Score=37.16 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=26.1
Q ss_pred ccEEEEEccChhHHHHHHHHHcC-CCeEEEEEe
Q 024629 3 KVKIGINGFGRIGRLVARVILQR-DDVELVAVN 34 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~-p~~el~~i~ 34 (265)
+..|.|||+|-+|..++..|.+. |+.+++.+-
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlE 37 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFE 37 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 46899999999999999999764 777665553
No 485
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=67.67 E-value=6.4 Score=35.52 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=22.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~ 32 (265)
..+||+|+|++|+++.+.+.... +.+++
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g-m~vI~ 174 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG-MHVIG 174 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC-ceEEe
Confidence 57999999999999999888663 54443
No 486
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=67.46 E-value=7.9 Score=35.43 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=23.2
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
+|.|||+|.+|...+..|..+. .+++.+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g-~~V~vl 29 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAG-HEVTVI 29 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CEEEEE
Confidence 8999999999999999888773 565444
No 487
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.20 E-value=24 Score=32.96 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=24.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||.|+|+|..|...++.|.+.. .++. +.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G-~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG-WEVV-VSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CEEE-EECC
Confidence 7999999999999999988875 5554 4444
No 488
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=66.98 E-value=5.9 Score=36.53 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=25.3
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..||.|+|+|-+|.+++..|.... +.=+.+.|.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G-vg~i~lvD~ 74 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG-VGTLGIVEF 74 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECC
Confidence 478999999999999999998653 544445443
No 489
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.72 E-value=11 Score=31.58 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.9
Q ss_pred ccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..+|-|.|+ |.+|+++++.|.++. .+++.+...
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~ 37 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEG-AKVVIADLN 37 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCC
Confidence 468999999 999999999998874 677666443
No 490
>PRK06753 hypothetical protein; Provisional
Probab=66.31 E-value=8.2 Score=34.74 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=23.5
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
++|.|+|+|..|..++..|.++ +++++-+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g~~v~v~ 29 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-GHEVKVF 29 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEE
Confidence 4899999999999999998876 4665444
No 491
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=66.29 E-value=5.5 Score=36.20 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=26.5
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEE
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAV 33 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i 33 (265)
++||+|||+|-.|....-+|..|-++.|-=.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA 38 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEA 38 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEec
Confidence 5899999999999999999998877766433
No 492
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=66.28 E-value=10 Score=30.66 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 5 KIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 5 ~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
++.|+|+|..|+++++.|.++ ++++++..|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcC
Confidence 478999999999999999866 6899988875
No 493
>PRK07577 short chain dehydrogenase; Provisional
Probab=66.17 E-value=12 Score=30.96 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 1 m~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
|...++-|.|+ |.+|+.+++.|.++. .+++.+..
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r 35 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGIAR 35 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeC
Confidence 54568999999 999999999999874 67766653
No 494
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=66.07 E-value=17 Score=32.01 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=23.8
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
.++-|.|+|-+|+.++..|.... .+-+.|.++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G-~~~V~I~~R 158 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDG-AKEITIFNI 158 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEeC
Confidence 57899999999999999888764 443334444
No 495
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.04 E-value=27 Score=30.75 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=20.9
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEE
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~ 31 (265)
.+|.|+|. |.+|+-++.+|.++. ..+.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g-atVt 187 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN-ATVT 187 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC-CEEE
Confidence 58999999 569999999888664 4443
No 496
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=66.01 E-value=11 Score=31.75 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=25.4
Q ss_pred cEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEec
Q 024629 4 VKIGINGF-GRIGRLVARVILQRDDVELVAVND 35 (265)
Q Consensus 4 ~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~ 35 (265)
++|-|.|+ |.+|..+++.|.++. .+++.+..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEEC
Confidence 37899999 999999999999874 67766543
No 497
>PLN02852 ferredoxin-NADP+ reductase
Probab=66.00 E-value=9 Score=36.51 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=26.2
Q ss_pred ccEEEEEccChhHHHHHHHHHc-CCCeEEEEEec
Q 024629 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVAVND 35 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~-~p~~el~~i~~ 35 (265)
..||+|||+|..|...++.|.+ +++.++.-+-.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~ 59 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIER 59 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEec
Confidence 4689999999999999998874 35677665543
No 498
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=65.98 E-value=17 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.7
Q ss_pred ccEEEEEccChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 3 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 3 ~~~V~IiG~G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
..|++|+|+|.+|+.+++.|.+.. ..-+.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999999998763 233344444
No 499
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=65.89 E-value=11 Score=31.54 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=26.7
Q ss_pred CccEEEEEcc-ChhHHHHHHHHHcCCCeEEEEEecc
Q 024629 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAVNDP 36 (265)
Q Consensus 2 ~~~~V~IiG~-G~~G~~l~r~L~~~p~~el~~i~~~ 36 (265)
||.+|-|.|+ |.+|..+++.|.++. .+++.+..+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~~~~~ 35 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGINYAR 35 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCC
Confidence 1468999999 999999999999874 676655433
No 500
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=65.75 E-value=23 Score=31.96 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=22.4
Q ss_pred cEEEEEccChhHHHHHHHHHcCCCe-EEEEEe
Q 024629 4 VKIGINGFGRIGRLVARVILQRDDV-ELVAVN 34 (265)
Q Consensus 4 ~~V~IiG~G~~G~~l~r~L~~~p~~-el~~i~ 34 (265)
-+|.|.|+|.+|..++.++... +. +++++.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~ 223 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA-GASQVVAVD 223 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEEEc
Confidence 3789999999999998877766 45 455543
Done!