BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024630
MSFQGPSFGYNVNVMNVKAVKCMPSSCINNLRKHCSLSPLNPYQCNVGLVGSSARRNNIR
FMPSANVNLNCEPLPFGRIFQLSSLRPCQVKQSDDTEGNLSGESIMLDEEILKRELQIAI
EEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP
GASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQ
FVTNVFEKLDGQWFICIHHASPVDL

High Scoring Gene Products

Symbol, full name Information P value
AT4G10925 protein from Arabidopsis thaliana 7.3e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024630
        (265 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006436 - symbol:AT4G10925 "AT4G10925" speci...   170  7.3e-13   1


>TAIR|locus:505006436 [details] [associations]
            symbol:AT4G10925 "AT4G10925" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
            [GO:0048573 "photoperiodism, flowering" evidence=RCA]
            InterPro:IPR001810 PROSITE:PS50181 UniPathway:UPA00143
            EMBL:CP002687 GenomeReviews:CT486007_GR SUPFAM:SSF81383
            GO:GO:0016567 EMBL:AL161518 eggNOG:NOG252036
            ProtClustDB:CLSN2686016 EMBL:AF080118 EMBL:AL049525 EMBL:AY059743
            EMBL:AY096714 EMBL:AK117762 EMBL:AY084656 IPI:IPI00526761
            PIR:T01884 RefSeq:NP_001190698.1 RefSeq:NP_567369.1
            RefSeq:NP_849357.1 UniGene:At.26640 ProteinModelPortal:Q93YV9
            SMR:Q93YV9 STRING:Q93YV9 PaxDb:Q93YV9 PRIDE:Q93YV9 DNASU:826691
            EnsemblPlants:AT4G10925.1 EnsemblPlants:AT4G10925.2
            EnsemblPlants:AT4G10925.3 GeneID:826691 KEGG:ath:AT4G10925
            TAIR:At4g10925 HOGENOM:HOG000237950 InParanoid:Q93YV9 OMA:ANDDGAW
            PhylomeDB:Q93YV9 Genevestigator:Q93YV9 Uniprot:Q93YV9
        Length = 231

 Score = 170 (64.9 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 34/117 (29%), Positives = 62/117 (52%)

Query:   145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEF 204
             ++++ N  F+   ++  L  M  LW   D V C+H      SGY+ V++SW++ + N+E 
Sbjct:   107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 165

Query:   205 PLAIELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHHAS 261
                 ++  VR  +  ++ +VT   ++   G   G   +TNVFE  +G+W +  HH+S
Sbjct:   166 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       265   0.00093  114 3  11 22  0.46    33
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  228 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.98u 0.09s 25.07t   Elapsed:  00:00:01
  Total cpu time:  24.98u 0.09s 25.07t   Elapsed:  00:00:01
  Start:  Fri May 10 16:34:29 2013   End:  Fri May 10 16:34:30 2013

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