BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024630
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNX|A Chain A, Crystal Structure Of A Putative Dehydratase From The
Ntf2-Like Family (Sav_4671) From Streptomyces
Avermitilis At 2.10 A Resolution
pdb|3CNX|B Chain B, Crystal Structure Of A Putative Dehydratase From The
Ntf2-Like Family (Sav_4671) From Streptomyces
Avermitilis At 2.10 A Resolution
pdb|3CNX|C Chain C, Crystal Structure Of A Putative Dehydratase From The
Ntf2-Like Family (Sav_4671) From Streptomyces
Avermitilis At 2.10 A Resolution
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 27/141 (19%)
Query: 149 ANARFYDSFKNGDLATMQGLW---------------ARGDNVCCVHPGASGISGYDPVME 193
AN FY++ + GD T+ LW A V CVHPG +SG V+
Sbjct: 17 ANTAFYEAXERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLR 76
Query: 194 SWEVVWMNYEFPLAIELKNVRVHVRGNVGYVTCIEFVRTKGTSWG---------GQFV-- 242
S+ ++ N E+ + L +V V V G+ VTC E + + G GQ V
Sbjct: 77 SYALIXANTEY-IQFFLTDVHVSVTGDTALVTCTENILSGGPPPDDSDELGPLVGQLVVA 135
Query: 243 TNVFEKLDGQWFICIHHASPV 263
TNVF + W + HHASPV
Sbjct: 136 TNVFRRTPDGWKLWSHHASPV 156
>pdb|3GWR|A Chain A, Crystal Structure Of Putative CalciumCALMODULIN-Dependent
Protein Kinase Type Ii Association Domain (Yp_315894.1)
From Thiobacillus Denitrificans Atcc 25259 At 2.00 A
Resolution
pdb|3GWR|B Chain B, Crystal Structure Of Putative CalciumCALMODULIN-Dependent
Protein Kinase Type Ii Association Domain (Yp_315894.1)
From Thiobacillus Denitrificans Atcc 25259 At 2.00 A
Resolution
Length = 144
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 148 AANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLA 207
AA FY +F+ L +WAR D+V C+HP A+ ++G V W
Sbjct: 12 AAEDAFYAAFEARSLDDXXAVWARDDHVACIHPLAAPLNGRAAVAAGWRSX-FGAAGRFR 70
Query: 208 IELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQ---FVTNVFEKLDGQWFICIHHASPVD 264
+++K V +R + ++ T G + TNV+ + W +HHASP+
Sbjct: 71 LQVKAVH-EIRQADHVIRIVDEFLTIGDETAPRPAILATNVYRREADGWRXVLHHASPLQ 129
Query: 265 L 265
+
Sbjct: 130 V 130
>pdb|1HKX|A Chain A, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|B Chain B, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|C Chain C, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|D Chain D, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|E Chain E, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|F Chain F, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|G Chain G, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|H Chain H, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|I Chain I, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|J Chain J, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|K Chain K, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|L Chain L, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|M Chain M, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
pdb|1HKX|N Chain N, Crystal Structure Of CalciumCALMODULIN-Dependent Protein
Kinase
Length = 147
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 139 DEDSKT---SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG--ISGYDPVME 193
DED+K ++ + ++ NGD + + G + P A G + G D
Sbjct: 9 DEDTKVRKQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTAFEPEALGNLVEGLDFHRF 66
Query: 194 SWEVVWMNYEFPLAIELKNVRVHVRGN----VGYVTCIEFVRTKGTSWGGQFV-TNVFEK 248
+E +W P+ + N +H+ G+ + Y+ +++ G Q T V+ +
Sbjct: 67 YFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHR 126
Query: 249 LDGQWFICIHHAS 261
DG+W I H S
Sbjct: 127 RDGKWQIVHFHRS 139
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG--ISGYDPVMESWEVVWM 200
K ++ + ++ NGD + + G + P A G + G D +E +W
Sbjct: 317 KQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTAFEPEALGNLVEGLDFHRFYFENLWS 374
Query: 201 NYEFPLAIELKNVRVHVRGN----VGYVTCIEFVRTKGTSWGGQFV-TNVFEKLDGQWFI 255
P+ + N +H+ G+ + Y+ +++ G Q T V+ + DG+W I
Sbjct: 375 RNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQI 434
Query: 256 CIHHAS 261
H S
Sbjct: 435 VHFHRS 440
>pdb|2UX0|F Chain F, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|A Chain A, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|B Chain B, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|C Chain C, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|D Chain D, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
pdb|2UX0|E Chain E, Structure Of The Oligomerisation Domain Of Calcium-
Calmodulin Dependent Protein Kinase Ii Gamma
Length = 143
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 139 DED---SKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG--ISGYDPVME 193
DED K ++ + ++ NGD + G + P A G + G D
Sbjct: 5 DEDLKVRKQEIIKITEQLIEAINNGDFEAYTKICDPG--LTSFEPEALGNLVEGMDFHKF 62
Query: 194 SWEVVWMNYEFPLAIELKNVRVHVRGN----VGYVTCIEFVRTKGTSWGGQFV-TNVFEK 248
+E + P+ + N VHV G + Y+ +++ +G Q T V+ +
Sbjct: 63 YFENLLSKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHR 122
Query: 249 LDGQWFICIHHAS 261
DG+W +H S
Sbjct: 123 RDGKWLNVHYHCS 135
>pdb|3H51|A Chain A, Crystal Structure Of Putative CalciumCALMODULIN DEPENDENT
PROTEIN Kinase Ii Association Domain (Np_636218.1) From
Xanthomonas Campestris At 1.70 A Resolution
pdb|3H51|B Chain B, Crystal Structure Of Putative CalciumCALMODULIN DEPENDENT
PROTEIN Kinase Ii Association Domain (Np_636218.1) From
Xanthomonas Campestris At 1.70 A Resolution
Length = 156
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 243 TNVFEKLDGQWFICIHHAS 261
T V+EK DG+W I HH+S
Sbjct: 120 TFVYEKRDGKWLIINHHSS 138
>pdb|1VP2|A Chain A, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|1VP2|B Chain B, Crystal Structure Of A Putative Xanthosine Triphosphate
PyrophosphataseHAM1 PROTEIN HOMOLOG (TM0159) FROM
THERMOTOGA Maritima At 1.78 A Resolution
pdb|3S86|A Chain A, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|B Chain B, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|C Chain C, Crystal Structure Of Tm0159 With Bound Imp
pdb|3S86|D Chain D, Crystal Structure Of Tm0159 With Bound Imp
Length = 208
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 123 EDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA 182
E++ K+R LKML+ + + +A F+D +N T+ + R +
Sbjct: 101 EEHSYKEKMRTILKMLEGKDRRAAFVCSATFFDPVEN----TLISVEDRVEGRIANEIRG 156
Query: 183 SGISGYDP 190
+G GYDP
Sbjct: 157 TGGFGYDP 164
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 97 EGNLSGESIMLDEEILKRELQI--AIEEEDYVQAAKLRDSLKMLD 139
E +LSGE L E I + EL + A E D+ +AA+LRD ++ L+
Sbjct: 602 EADLSGED--LRERIAELELAMWQAAEALDFERAARLRDEIRALE 644
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 97 EGNLSGESIMLDEEILKRELQI--AIEEEDYVQAAKLRDSLKMLD 139
E +LSGE L E I + EL + A E D+ +AA+LRD ++ L+
Sbjct: 601 EADLSGED--LRERIAELELAMWQAAEALDFERAARLRDEIRALE 643
>pdb|3RYL|A Chain A, Dimerization Domain Of Vibrio Parahemolyticus Vopl
pdb|3RYL|B Chain B, Dimerization Domain Of Vibrio Parahemolyticus Vopl
Length = 241
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 139 DEDSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGY 188
+++ KT+ A A FY +FKN D A DN+ +G SGY
Sbjct: 174 EQNGKTAFYALRAGFYSAFKNTDTAKQDITKFXKDNL------QAGFSGY 217
>pdb|3SEO|A Chain A, Crystal Structure Of Vopl C Terminal Domain
pdb|3SEO|B Chain B, Crystal Structure Of Vopl C Terminal Domain
Length = 241
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 139 DEDSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGY 188
+++ KT+ A A FY +FKN D A DN+ +G SGY
Sbjct: 174 EQNGKTAFYALRAGFYSAFKNTDTAKQDITKFMKDNL------QAGFSGY 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,404,374
Number of Sequences: 62578
Number of extensions: 343376
Number of successful extensions: 784
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 13
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)