BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024630
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YV9|SKIP8_ARATH F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1
Length = 231
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEF 204
++++ N F+ ++ L M LW D V C+H SGY+ V++SW++ N+E
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLC-FNWEQ 165
Query: 205 PLAIELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHHAS 261
++ VR + ++ +VT ++ G G +TNVFE +G+W + HH+S
Sbjct: 166 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219
>sp|Q5RCC4|KCC2A_PONAB Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Pongo abelii GN=CAMK2A PE=2 SV=2
Length = 478
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 121 EEEDYVQAAKLRDSLKMLDEDSKT---SVLAANARFYDSFKNGDLATMQGLWARGDNVCC 177
++ D V+ + + + DED+K ++ + ++ NGD + + G +
Sbjct: 322 KKSDGVKESSESTNTTIEDEDTKVRKQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTA 379
Query: 178 VHPGASG--ISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGN----VGYVTCIEFVR 231
P A G + G D +E +W P+ + N +H+ G+ + Y+ +++
Sbjct: 380 FEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 439
Query: 232 TKGTSWGGQFV-TNVFEKLDGQWFICIHHAS 261
G Q T V+ + DG+W I H S
Sbjct: 440 AGGIPRTAQSEETRVWHRRDGKWQIVHFHRS 470
>sp|Q9UQM7|KCC2A_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Homo sapiens GN=CAMK2A PE=1 SV=2
Length = 478
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 121 EEEDYVQAAKLRDSLKMLDEDSKT---SVLAANARFYDSFKNGDLATMQGLWARGDNVCC 177
++ D V+ + + + DED+K ++ + ++ NGD + + G +
Sbjct: 322 KKSDGVKESSESTNTTIEDEDTKVRKQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTA 379
Query: 178 VHPGASG--ISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGN----VGYVTCIEFVR 231
P A G + G D +E +W P+ + N +H+ G+ + Y+ +++
Sbjct: 380 FEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLD 439
Query: 232 TKGTSWGGQFV-TNVFEKLDGQWFICIHHAS 261
G Q T V+ + DG+W I H S
Sbjct: 440 AGGIPRTAQSEETRVWHRRDGKWQIVHFHRS 470
>sp|P11275|KCC2A_RAT Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Rattus norvegicus GN=Camk2a PE=1 SV=1
Length = 478
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 139 DEDSKT---SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG--ISGYDPVME 193
DED+K ++ + ++ NGD + + G + P A G + G D
Sbjct: 340 DEDTKVRKQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTAFEPEALGNLVEGLDFHRF 397
Query: 194 SWEVVWMNYEFPLAIELKNVRVHVRGN----VGYVTCIEFVRTKGTSWGGQFV-TNVFEK 248
+E +W P+ + N +H+ G+ + Y+ +++ G Q T V+ +
Sbjct: 398 YFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHR 457
Query: 249 LDGQWFICIHHAS 261
DG+W I H S
Sbjct: 458 RDGKWQIVHFHRS 470
>sp|P11798|KCC2A_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit alpha
OS=Mus musculus GN=Camk2a PE=1 SV=2
Length = 478
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 139 DEDSKT---SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG--ISGYDPVME 193
DED+K ++ + ++ NGD + + G + P A G + G D
Sbjct: 340 DEDTKVRKQEIIKVTEQLIEAISNGDFESYTKMCDPG--MTAFEPEALGNLVEGLDFHRF 397
Query: 194 SWEVVWMNYEFPLAIELKNVRVHVRGN----VGYVTCIEFVRTKGTSWGGQFV-TNVFEK 248
+E +W P+ + N +H+ G+ + Y+ +++ G Q T V+ +
Sbjct: 398 YFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHR 457
Query: 249 LDGQWFICIHHAS 261
DG+W I H S
Sbjct: 458 RDGKWQIVHFHRS 470
>sp|Q1GDL4|UVRC_RUEST UvrABC system protein C OS=Ruegeria sp. (strain TM1040) GN=uvrC
PE=3 SV=1
Length = 635
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 87 PC--QVKQSD------DTEGNLSGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKML 138
PC ++ Q+D D E L+G S + EE L E+Q A E +Y +AA LRD +K L
Sbjct: 201 PCVGKISQADYADSVRDAERFLAGRSTKIQEE-LGAEMQAASEAMEYERAAALRDRIKAL 259
Query: 139 DE 140
+
Sbjct: 260 TQ 261
>sp|P37569|YACH_BACSU Uncharacterized protein YacH OS=Bacillus subtilis (strain 168)
GN=yacH PE=4 SV=1
Length = 185
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 110 EILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTS 145
++LK+EL+ I +E++ AA +RD +++L++ K++
Sbjct: 143 DMLKKELESLIHQEEFENAAHVRDQIRLLEQSLKST 178
>sp|P19412|BAIE_EUBSP Bile acid 7-alpha dehydratase OS=Eubacterium sp. (strain VPI 12708)
GN=baiE PE=1 SV=1
Length = 166
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 238 GGQFVTNVFEKLDGQWFIC 256
GG F T+ +EK+DGQW+I
Sbjct: 122 GGAFYTDKYEKIDGQWYIL 140
>sp|Q54I92|PSII_DICDI Protein psiI OS=Dictyostelium discoideum GN=psiI PE=3 SV=1
Length = 719
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 24 PSSCINNLRKH--CSLSPLNPYQCNVGLVGSSARRNNIRFMPSANVNLNCEPLPFGRIFQ 81
P SC N+ C++ L+P C+ G V + ++NN + ++N C PLP I
Sbjct: 412 PDSCEQNVCNAGVCTIKKLDPSVCSCGCVLNKCQKNNC--VTASNGTSVCSPLPLDEI-- 467
Query: 82 LSSLRPCQVKQSDDTEG 98
PC D+T G
Sbjct: 468 -DDGNPCTDDHCDETTG 483
>sp|Q9RUN0|UVRC_DEIRA UvrABC system protein C OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=uvrC PE=3 SV=1
Length = 617
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 82 LSSLRPCQVKQS-DDTEGNLSGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140
+ + +P + +Q+ +D + L G + + LK ++++A + +D+ QAA+LRD ++ +++
Sbjct: 170 IDAAQPDEYRQAVEDVKALLEGRAAPVIAR-LKEDMKVAAQGQDFEQAARLRDRVQAVEK 228
Query: 141 DSKTSVLA-----ANARFYDSFKNGDLATMQGLWARGDNVC 176
T A + F + + G+ A +Q RG V
Sbjct: 229 LFGTEQHAFVSEETDLDFLGAAQAGEFAMVQLFRMRGGRVV 269
>sp|B2I637|UVRC_XYLF2 UvrABC system protein C OS=Xylella fastidiosa (strain M23) GN=uvrC
PE=3 SV=1
Length = 621
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 100 LSGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKML 138
L G+S +L EE+++ +Q+A E ++ QAA+LRD L L
Sbjct: 202 LEGKSDLLAEELIQ-AMQVASEHLEFEQAARLRDLLTSL 239
>sp|Q30ZK3|UVRB_DESDG UvrABC system protein B OS=Desulfovibrio desulfuricans (strain G20)
GN=uvrB PE=3 SV=1
Length = 682
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 87 PCQVKQSDDTEGNLSGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140
P Q D T +S E + + L+RE++ + + ++ +AA+LRD ++ML E
Sbjct: 623 PAQTAAEDTTAYGISAEELGGLIQRLEREMRESARDLEFEKAAELRDRIRMLRE 676
>sp|Q87BX2|UVRC_XYLFT UvrABC system protein C OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=uvrC PE=3 SV=1
Length = 621
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 100 LSGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKML 138
L G+S +L EE+++ +Q+A E ++ QAA+LRD L L
Sbjct: 202 LEGKSDLLAEELIQ-AMQVASEHLEFEQAARLRDLLTSL 239
>sp|Q9PB34|UVRC_XYLFA UvrABC system protein C OS=Xylella fastidiosa (strain 9a5c) GN=uvrC
PE=3 SV=2
Length = 621
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 100 LSGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKML 138
L G+S +L EE+++ +Q+A E ++ QAA+LRD L L
Sbjct: 202 LEGKSDLLAEELIQ-AMQVASEHLEFEQAARLRDLLTSL 239
>sp|Q2IBF7|CTTB2_GORGO Cortactin-binding protein 2 OS=Gorilla gorilla gorilla GN=CTTNBP2
PE=3 SV=1
Length = 1663
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 50 VGSSARRNNIRF-MPSANV-NLNCEPLPFGRIFQLSSLRPCQVKQSDDTEGNLS-----G 102
V +S RR + RF +P+ N +L+ E + I QL+ R + + E +LS
Sbjct: 1458 VNTSPRRKSGRFSLPTWNKPDLSTEGMKNKTISQLNCNRNASLSKQKSLENDLSLTLNLD 1517
Query: 103 ESIML---DEEILKRELQI---AIEEEDYVQAAKLRDSLKMLDEDSKTSVLAA 149
+ + L DE L +ELQ + E D + A RD L+M D VL+A
Sbjct: 1518 QRLSLGSDDEADLVKELQSMCSSKSESDISKIADSRDDLRMFDSSGNNPVLSA 1570
>sp|Q8WZ74|CTTB2_HUMAN Cortactin-binding protein 2 OS=Homo sapiens GN=CTTNBP2 PE=1 SV=1
Length = 1663
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 50 VGSSARRNNIRF-MPSANV-NLNCEPLPFGRIFQLSSLRPCQVKQSDDTEGNLS-----G 102
V +S RR + RF +P+ N +L+ E + I QL+ R + + E +LS
Sbjct: 1458 VNTSPRRKSGRFSLPTWNKPDLSTEGMKNKTISQLNCNRNASLSKQKSLENDLSLTLNLD 1517
Query: 103 ESIML---DEEILKRELQI---AIEEEDYVQAAKLRDSLKMLDEDSKTSVLAA 149
+ + L DE L +ELQ + E D + A RD L+M D VL+A
Sbjct: 1518 QRLSLGSDDEADLVKELQSMCSSKSESDISKIADSRDDLRMFDSSGNNPVLSA 1570
>sp|Q2IBE6|CTTB2_PONAB Cortactin-binding protein 2 OS=Pongo abelii GN=CTTNBP2 PE=3 SV=2
Length = 1663
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 50 VGSSARRNNIRF-MPSANV-NLNCEPLPFGRIFQLSSLRPCQVKQSDDTEGNLS-----G 102
V +S RR + RF +P+ N +L+ E + + QL+ R + + E +LS
Sbjct: 1458 VNTSPRRKSGRFSLPTWNKPDLSTEGMKNKTVSQLNCNRSASLSKQKSLENDLSLTLNLD 1517
Query: 103 ESIML---DEEILKRELQI---AIEEEDYVQAAKLRDSLKMLDEDSKTSVLAA 149
+ + L DE L +ELQ + E D + A RD L+M D VL+A
Sbjct: 1518 QRLSLGSDDEADLVKELQSMCSSKSESDISKIADSRDDLRMFDSSGNNPVLSA 1570
>sp|A0M8S4|CTTB2_PAPAN Cortactin-binding protein 2 OS=Papio anubis GN=CTTNBP2 PE=3 SV=1
Length = 1663
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 50 VGSSARRNNIRF-MPSANV-NLNCEPLPFGRIFQLSSLRPCQVKQSDDTEGNLS-----G 102
V +S RR + RF +P+ N +L+ E + I QL+ R + + E +LS
Sbjct: 1458 VNTSPRRKSGRFSLPTWNKPDLSTEGIKNKTISQLNYNRNASLSKQKSLENDLSLTLNLD 1517
Query: 103 ESIML---DEEILKRELQI---AIEEEDYVQAAKLRDSLKMLDEDSKTSVLAA 149
+ + L DE L +ELQ + E D + A RD L+M D VL+A
Sbjct: 1518 QRLSLGSDDEADLVKELQSMCSSKSESDISKIADSRDDLRMFDSSGNNPVLSA 1570
>sp|Q53QZ3|RHG15_HUMAN Rho GTPase-activating protein 15 OS=Homo sapiens GN=ARHGAP15 PE=1
SV=2
Length = 475
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 117 QIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANAR---FYDSFKNGDLATMQ-GLWARG 172
Q+ +E+E Y+Q AK+ D K L ++ TS + ++R FY K L+ M+ G
Sbjct: 77 QLMVEKEGYLQKAKIADGGKKLRKNWSTSWIVLSSRRIEFYKESKQQALSNMKTGHKPES 136
Query: 173 DNVCCVH 179
++C H
Sbjct: 137 VDLCGAH 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,474,238
Number of Sequences: 539616
Number of extensions: 4260304
Number of successful extensions: 10958
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 10952
Number of HSP's gapped (non-prelim): 31
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)