Query 024630
Match_columns 265
No_of_seqs 209 out of 646
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4319 Ketosteroid isomerase 99.8 1.4E-19 2.9E-24 151.2 15.2 119 142-263 8-131 (137)
2 PF13474 SnoaL_3: SnoaL-like d 99.8 4.8E-18 1E-22 132.7 16.4 114 146-262 1-118 (121)
3 TIGR02246 conserved hypothetic 99.8 2E-17 4.3E-22 131.0 16.4 121 141-263 1-126 (128)
4 PF08332 CaMKII_AD: Calcium/ca 99.8 3.3E-17 7.1E-22 135.9 15.5 119 143-263 2-127 (128)
5 PF14534 DUF4440: Domain of un 99.6 7E-14 1.5E-18 106.2 13.5 104 146-255 1-107 (107)
6 PF11533 DUF3225: Protein of u 99.4 6.5E-12 1.4E-16 103.6 12.6 116 142-264 8-124 (125)
7 COG4875 Uncharacterized protei 99.1 3.1E-09 6.8E-14 88.1 13.0 117 141-263 34-152 (156)
8 PF13577 SnoaL_4: SnoaL-like d 99.0 1.6E-08 3.5E-13 79.7 15.3 115 142-259 5-127 (127)
9 PF12680 SnoaL_2: SnoaL-like d 99.0 2.7E-08 5.9E-13 74.1 13.9 96 151-253 2-99 (102)
10 cd00531 NTF2_like Nuclear tran 98.6 2.5E-06 5.3E-11 64.7 14.8 111 147-261 2-122 (124)
11 cd00781 ketosteroid_isomerase 98.5 4.7E-06 1E-10 65.8 14.4 109 144-259 3-112 (122)
12 PF12893 Lumazine_bd_2: Putati 98.5 2E-06 4.3E-11 68.7 11.3 109 143-258 3-113 (116)
13 COG3880 Modulator of heat shoc 98.4 8.9E-08 1.9E-12 82.7 1.9 40 102-141 131-170 (176)
14 TIGR02096 conserved hypothetic 98.3 4.8E-05 1E-09 60.3 14.7 105 148-259 2-116 (129)
15 PF02151 UVR: UvrB/uvrC motif; 98.2 6.4E-07 1.4E-11 58.8 2.4 33 108-140 3-35 (36)
16 TIGR02960 SigX5 RNA polymerase 98.2 4.8E-05 1E-09 70.4 14.9 107 143-259 203-310 (324)
17 PRK08241 RNA polymerase factor 98.1 0.00015 3.3E-09 67.7 15.1 108 142-259 212-320 (339)
18 PRK09636 RNA polymerase sigma 97.9 0.00054 1.2E-08 63.1 14.7 79 144-226 171-256 (293)
19 PF07366 SnoaL: SnoaL-like pol 97.8 0.00035 7.5E-09 55.7 11.4 97 150-251 4-108 (126)
20 cd00667 ring_hydroxylating_dio 97.8 0.0018 3.8E-08 54.3 15.4 118 143-261 3-146 (160)
21 PF02136 NTF2: Nuclear transpo 97.7 0.0011 2.3E-08 52.3 12.7 108 146-258 2-114 (118)
22 PF07858 LEH: Limonene-1,2-epo 97.7 0.0024 5.2E-08 53.0 14.2 101 147-252 4-106 (125)
23 PLN02382 probable sucrose-phos 97.5 0.0038 8.2E-08 61.0 15.4 109 152-264 292-412 (413)
24 PF12870 Lumazine_bd: Lumazine 97.5 0.0009 1.9E-08 51.4 8.9 106 143-256 6-111 (111)
25 TIGR02957 SigX4 RNA polymerase 97.4 0.0072 1.6E-07 55.6 15.8 78 143-226 163-247 (281)
26 PRK10069 3-phenylpropionate di 97.4 0.0096 2.1E-07 51.8 15.3 122 138-261 14-168 (183)
27 COG4538 Uncharacterized conser 97.4 0.0022 4.8E-08 51.4 9.9 81 144-231 3-83 (112)
28 PF12707 DUF3804: Protein of u 97.2 0.008 1.7E-07 49.6 11.2 108 143-263 3-120 (128)
29 cd00780 NTF2 Nuclear transport 96.7 0.11 2.4E-06 41.5 14.3 107 147-259 7-114 (119)
30 PRK09635 sigI RNA polymerase s 96.7 0.055 1.2E-06 50.4 14.0 77 144-226 174-250 (290)
31 COG4922 Uncharacterized protei 96.3 0.081 1.7E-06 43.7 11.0 102 150-263 12-113 (129)
32 PF05223 MecA_N: NTF2-like N-t 96.3 0.04 8.7E-07 44.4 9.2 105 146-261 3-108 (118)
33 COG4460 Uncharacterized protei 96.1 0.068 1.5E-06 44.0 9.6 111 142-257 5-124 (130)
34 COG3631 Ketosteroid isomerase- 95.9 0.095 2.1E-06 43.8 10.0 99 148-252 8-113 (133)
35 COG4308 LimA Limonene-1,2-epox 95.7 0.073 1.6E-06 44.2 8.1 103 145-252 7-109 (130)
36 COG0556 UvrB Helicase subunit 95.5 0.0077 1.7E-07 61.0 2.3 40 101-140 618-657 (663)
37 TIGR00631 uvrb excinuclease AB 95.1 0.017 3.7E-07 59.8 3.3 35 105-139 621-655 (655)
38 COG4337 Uncharacterized protei 94.8 0.096 2.1E-06 45.7 6.7 56 207-262 145-201 (206)
39 PRK01617 hypothetical protein; 94.8 0.22 4.8E-06 42.8 8.8 99 145-257 29-128 (154)
40 PRK07883 hypothetical protein; 94.6 0.023 4.9E-07 57.7 2.7 33 108-140 407-439 (557)
41 PRK00558 uvrC excinuclease ABC 94.4 0.026 5.6E-07 57.9 2.6 32 108-139 203-234 (598)
42 PRK05298 excinuclease ABC subu 94.2 0.022 4.8E-07 58.7 1.6 38 103-140 609-646 (652)
43 PRK12306 uvrC excinuclease ABC 93.8 0.039 8.5E-07 55.7 2.5 32 108-139 193-224 (519)
44 PRK14666 uvrC excinuclease ABC 93.8 0.041 8.9E-07 57.3 2.7 33 108-140 202-234 (694)
45 PRK14672 uvrC excinuclease ABC 93.5 0.054 1.2E-06 56.4 2.9 32 108-139 206-237 (691)
46 PRK14667 uvrC excinuclease ABC 93.4 0.054 1.2E-06 55.3 2.7 33 108-140 200-232 (567)
47 TIGR03231 anthran_1_2_B anthra 93.4 4.5 9.8E-05 34.4 14.4 111 148-260 3-139 (155)
48 PRK14671 uvrC excinuclease ABC 93.3 0.058 1.2E-06 55.6 2.7 32 108-139 216-247 (621)
49 PRK14670 uvrC excinuclease ABC 93.2 0.061 1.3E-06 55.0 2.8 32 108-139 178-209 (574)
50 PRK14668 uvrC excinuclease ABC 93.1 0.058 1.3E-06 55.2 2.5 32 108-139 200-231 (577)
51 PRK14669 uvrC excinuclease ABC 93.1 0.066 1.4E-06 55.3 2.9 32 108-139 204-235 (624)
52 TIGR00194 uvrC excinuclease AB 93.1 0.061 1.3E-06 55.0 2.5 32 108-139 195-226 (574)
53 PRK00183 hypothetical protein; 92.8 0.69 1.5E-05 40.0 8.2 98 145-257 29-127 (157)
54 PRK04233 hypothetical protein; 92.7 0.84 1.8E-05 38.2 8.4 92 146-256 34-126 (129)
55 COG0322 UvrC Nuclease subunit 91.1 0.15 3.2E-06 52.4 2.6 32 108-139 203-234 (581)
56 PRK01752 hypothetical protein; 90.1 1.3 2.8E-05 38.3 7.1 96 146-257 33-128 (156)
57 PF13355 DUF4101: Protein of u 89.4 2.3 5E-05 34.6 7.8 51 206-256 55-116 (117)
58 PRK02250 hypothetical protein; 88.9 2.5 5.5E-05 36.7 8.1 97 145-257 28-124 (166)
59 PRK01842 hypothetical protein; 88.2 3.1 6.8E-05 35.7 8.1 95 146-257 49-144 (149)
60 COG3012 Uncharacterized protei 86.3 3 6.4E-05 35.8 6.8 97 145-256 29-125 (151)
61 PF02982 Scytalone_dh: Scytalo 85.3 7.2 0.00016 33.9 8.8 112 145-259 9-139 (160)
62 COG4994 Uncharacterized protei 82.8 1.1 2.3E-05 36.8 2.5 24 240-263 95-118 (120)
63 KOG0412 Golgi transport comple 80.6 4 8.6E-05 42.9 6.3 85 108-198 126-239 (773)
64 PF12642 TpcC: Conjugative tra 75.1 48 0.001 29.2 10.9 90 144-256 140-231 (232)
65 PF10184 DUF2358: Uncharacteri 72.3 48 0.001 26.4 12.3 102 147-258 5-113 (113)
66 PF07743 HSCB_C: HSCB C-termin 69.9 17 0.00037 26.9 5.8 57 106-169 7-63 (78)
67 PRK11020 hypothetical protein; 68.0 4.5 9.7E-05 33.4 2.4 77 105-181 10-98 (118)
68 PF04280 Tim44: Tim44-like dom 67.7 65 0.0014 26.1 9.7 29 144-172 22-50 (147)
69 TIGR03232 benzo_1_2_benB benzo 67.7 76 0.0017 26.9 14.6 106 155-261 10-140 (155)
70 PF12510 Smoothelin: Smootheli 61.4 8.8 0.00019 27.7 2.6 32 106-140 21-52 (54)
71 PF13838 Clathrin_H_link: Clat 60.5 11 0.00024 28.1 3.2 22 110-131 7-28 (66)
72 TIGR00714 hscB Fe-S protein as 57.7 26 0.00055 29.9 5.4 60 102-168 76-135 (157)
73 PF00866 Ring_hydroxyl_B: Ring 56.1 1.2E+02 0.0025 25.2 13.7 105 155-260 4-135 (145)
74 PRK01773 hscB co-chaperone Hsc 55.1 33 0.00072 29.9 5.8 59 103-168 91-149 (173)
75 PRK05014 hscB co-chaperone Hsc 54.4 25 0.00055 30.4 4.9 61 102-168 88-148 (171)
76 PF12883 DUF3828: Protein of u 53.8 32 0.00069 27.8 5.1 21 238-258 96-116 (120)
77 PF12793 SgrR_N: Sugar transpo 52.8 50 0.0011 26.8 6.1 41 93-133 53-94 (115)
78 PF14276 DUF4363: Domain of un 52.0 54 0.0012 26.2 6.2 62 107-168 26-100 (121)
79 PF04420 CHD5: CHD5-like prote 51.8 6.2 0.00013 33.8 0.7 40 103-142 43-82 (161)
80 TIGR00984 3a0801s03tim44 mitoc 50.2 1.4E+02 0.0031 29.4 9.8 22 151-172 256-277 (378)
81 PF12647 RNHCP: RNHCP domain; 48.5 25 0.00054 28.0 3.5 21 238-258 49-69 (92)
82 PRK01356 hscB co-chaperone Hsc 48.1 30 0.00066 29.8 4.4 34 135-168 111-144 (166)
83 PRK03578 hscB co-chaperone Hsc 47.5 58 0.0013 28.4 6.1 58 103-167 94-152 (176)
84 PF05494 Tol_Tol_Ttg2: Toluene 46.4 1.8E+02 0.0039 24.5 9.0 49 206-258 85-135 (170)
85 PF07729 FCD: FCD domain; Int 45.9 58 0.0012 24.3 5.2 64 107-170 27-120 (125)
86 COG5517 Small subunit of pheny 43.5 2.3E+02 0.0049 24.9 9.4 116 144-260 8-148 (164)
87 COG2877 KdsA 3-deoxy-D-manno-o 42.4 6.6 0.00014 36.6 -0.6 23 4-26 167-189 (279)
88 PHA03099 epidermal growth fact 41.5 16 0.00034 31.0 1.5 38 5-42 49-90 (139)
89 PF14559 TPR_19: Tetratricopep 40.6 62 0.0013 22.1 4.3 50 119-171 1-50 (68)
90 COG3118 Thioredoxin domain-con 38.0 69 0.0015 30.7 5.4 57 113-172 138-194 (304)
91 KOG4353 RNA export factor NXT1 37.0 2.5E+02 0.0054 23.9 7.9 99 150-255 20-123 (139)
92 PRK10564 maltose regulon perip 36.9 50 0.0011 31.6 4.3 43 112-160 260-302 (303)
93 PF11453 DUF2950: Protein of u 36.3 1.1E+02 0.0023 28.9 6.3 45 145-193 6-50 (271)
94 COG2854 Ttg2D ABC-type transpo 35.8 1.8E+02 0.0038 26.3 7.3 114 105-258 51-167 (202)
95 KOG1333 Uncharacterized conser 35.5 28 0.00061 31.8 2.2 27 145-171 41-67 (241)
96 PF14863 Alkyl_sulf_dimr: Alky 35.4 95 0.0021 26.2 5.3 48 108-156 69-116 (141)
97 TIGR03481 HpnM hopanoid biosyn 35.3 2.3E+02 0.0051 24.9 8.1 18 240-257 140-157 (198)
98 PF14805 THDPS_N_2: Tetrahydro 35.0 1.2E+02 0.0026 22.8 5.2 42 111-163 2-43 (70)
99 PRK15117 ABC transporter perip 34.8 2.4E+02 0.0052 25.1 8.1 49 206-257 115-165 (211)
100 PRK13848 conjugal transfer pro 34.5 79 0.0017 25.3 4.3 61 103-165 6-68 (98)
101 PF07080 DUF1348: Protein of u 32.8 3.2E+02 0.0069 23.4 14.3 111 143-262 10-121 (143)
102 PF05546 She9_MDM33: She9 / Md 31.6 30 0.00064 31.4 1.8 70 95-172 27-101 (207)
103 PRK10404 hypothetical protein; 31.0 59 0.0013 26.0 3.2 54 102-155 7-63 (101)
104 PF06810 Phage_GP20: Phage min 29.1 1.7E+02 0.0038 24.9 6.0 46 148-197 85-130 (155)
105 PF11815 DUF3336: Domain of un 28.6 1.1E+02 0.0024 25.7 4.7 65 108-172 12-85 (145)
106 PRK05562 precorrin-2 dehydroge 28.5 73 0.0016 29.0 3.7 61 110-174 150-216 (223)
107 PRK11032 hypothetical protein; 27.8 45 0.00097 29.0 2.2 25 150-174 47-71 (160)
108 TIGR02606 antidote_CC2985 puta 27.5 1E+02 0.0022 22.7 3.8 51 110-161 8-59 (69)
109 PF03704 BTAD: Bacterial trans 27.3 2.4E+02 0.0052 22.4 6.3 59 109-170 62-120 (146)
110 PF12731 Mating_N: Mating-type 26.9 67 0.0015 25.1 2.9 31 141-171 13-45 (95)
111 PF15469 Sec5: Exocyst complex 26.4 61 0.0013 27.6 2.8 33 110-142 87-119 (182)
112 KOG4825 Component of synaptic 26.0 20 0.00044 36.3 -0.3 31 108-138 172-202 (666)
113 PF04880 NUDE_C: NUDE protein, 25.6 55 0.0012 28.6 2.3 34 109-142 2-47 (166)
114 CHL00095 clpC Clp protease ATP 25.6 57 0.0012 34.8 2.9 36 104-139 414-449 (821)
115 TIGR03090 SASP_tlp small, acid 25.4 1.1E+02 0.0025 23.1 3.7 50 107-158 8-57 (70)
116 TIGR02795 tol_pal_ybgF tol-pal 24.4 2.9E+02 0.0062 20.2 6.1 61 111-171 4-64 (119)
117 PF07743 HSCB_C: HSCB C-termin 24.0 75 0.0016 23.3 2.5 32 104-135 35-66 (78)
118 PRK14474 F0F1 ATP synthase sub 24.0 5.6E+02 0.012 23.4 8.8 55 146-200 146-204 (250)
119 PF07334 IFP_35_N: Interferon- 22.5 41 0.00088 25.9 0.8 24 15-38 50-73 (76)
120 PHA02571 a-gt.4 hypothetical p 22.4 74 0.0016 26.1 2.3 47 108-154 15-65 (109)
121 PF13211 DUF4019: Protein of u 21.9 2.3E+02 0.0051 22.5 5.2 17 240-256 86-103 (105)
122 KOG2559 Predicted pseudouridin 21.5 94 0.002 29.3 3.1 85 17-119 72-162 (318)
123 PF04721 DUF750: Domain of unk 21.0 42 0.0009 24.7 0.6 30 231-260 19-48 (62)
124 PF03260 Lipoprotein_11: Lepid 20.6 2.1E+02 0.0045 26.8 5.1 61 109-172 21-82 (253)
125 KOG2104 Nuclear transport fact 20.2 5.2E+02 0.011 21.7 9.5 105 144-257 7-116 (126)
No 1
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=99.83 E-value=1.4e-19 Score=151.20 Aligned_cols=119 Identities=22% Similarity=0.334 Sum_probs=105.1
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCE
Q 024630 142 SKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNV 221 (265)
Q Consensus 142 sk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDv 221 (265)
...+|.+++..|.+|++++|+++++++|++| ++.+.|.+.++.|+++|+..|+.+|+.+.+++.+++.+++|.+.||+
T Consensus 8 ~~~~I~a~i~dw~~Av~a~D~~av~~~YtdD--av~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~ 85 (137)
T COG4319 8 QVDAIRAAIADWAAAVRAKDADAVADFYTDD--AVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDV 85 (137)
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHhcCCc--eEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCE
Confidence 3478999999999999999999999999998 66667778899999999999999999888889999999999999999
Q ss_pred EEEEEEEEEec---CCcc-eeeEEEEEEEEEe-CCeEEEEEEeeCCC
Q 024630 222 GYVTCIEFVRT---KGTS-WGGQFVTNVFEKL-DGQWFICIHHASPV 263 (265)
Q Consensus 222 A~Vt~~e~v~~---~G~~-~g~~raTnVfrR~-dG~WrIVhhHaSp~ 263 (265)
|++++...+.. +|++ .-+.|+|.||||+ ||+|||+|+| +|.
T Consensus 86 a~~~~~~~~~~~~~dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh-~~~ 131 (137)
T COG4319 86 AFVTALLLLTGTKKDGPPADLAGRATYVFRKEADGGWKLAHDH-IPN 131 (137)
T ss_pred EEEEEeeeeeccCCCCcchhheeeeEEEEEEcCCCCEEEEEec-ccc
Confidence 99999988886 2333 2467999999998 5699999999 665
No 2
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=99.80 E-value=4.8e-18 Score=132.73 Aligned_cols=114 Identities=27% Similarity=0.376 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCC-CCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA-SGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYV 224 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg-~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~V 224 (265)
|.++.++|++||++||++++.++|++| +++++++. ..+.|++++++.|+..|+.. .++.++..+++|.+.+|+|++
T Consensus 1 V~~~~~~~~~a~~~~D~~~~~~~~~~d--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~a~~ 77 (121)
T PF13474_consen 1 VEALLEEWIEAFERGDIDALLSLFSDD--FVFFGTGPGEIWRGREAIRAYFERDFESF-RPISIEFEDVQVSVSGDVAVV 77 (121)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHEEEE--EEEEETTSSSEEESHHHHHHHHHHHHHTH-SEEEEEEEEEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHhCCHHHHHHhhCCC--EEEEcCCCCceECCHHHHHHHHHHHhhhC-ceEEEEEEEEEEEECCCEEEE
Confidence 678999999999999999999999965 88888765 45679999999999999765 468999999999999999999
Q ss_pred EEEEEEec--CCcc-eeeEEEEEEEEEeCCeEEEEEEeeCC
Q 024630 225 TCIEFVRT--KGTS-WGGQFVTNVFEKLDGQWFICIHHASP 262 (265)
Q Consensus 225 t~~e~v~~--~G~~-~g~~raTnVfrR~dG~WrIVhhHaSp 262 (265)
++...+.. +|.. ....|.|.||+|++|+|||+|+|.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~S~ 118 (121)
T PF13474_consen 78 TGEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHWSA 118 (121)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEecC
Confidence 98776653 4443 44679999999999999999999995
No 3
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=99.77 E-value=2e-17 Score=131.01 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=92.4
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEE-eC
Q 024630 141 DSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHV-RG 219 (265)
Q Consensus 141 Dsk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v-~G 219 (265)
|.+.+|.++..+|++|+++||+++++++|++|.. +..+.|..+.|+++|++.|+..+.....+..++.....+.+ ++
T Consensus 1 ~d~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~--~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 78 (128)
T TIGR02246 1 DDERAIRALVATWEAAWAAGDAEGFADLFTPDGV--FVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGP 78 (128)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCce--EECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCC
Confidence 4567899999999999999999999999999843 34233448899999999999888654433234444434444 44
Q ss_pred CEEEEEEEEEEec-CCcc---eeeEEEEEEEEEeCCeEEEEEEeeCCC
Q 024630 220 NVGYVTCIEFVRT-KGTS---WGGQFVTNVFEKLDGQWFICIHHASPV 263 (265)
Q Consensus 220 DvA~Vt~~e~v~~-~G~~---~g~~raTnVfrR~dG~WrIVhhHaSp~ 263 (265)
|.|++.+...+.. +|.. ....++|.+++|++|+|||+|+|.|++
T Consensus 79 ~~A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~s~~ 126 (128)
T TIGR02246 79 DLAIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHNTPV 126 (128)
T ss_pred CEEEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccCCCC
Confidence 7999888876654 3332 235799999999999999999999986
No 4
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=99.76 E-value=3.3e-17 Score=135.92 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC--CCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCC
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP--GASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGN 220 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP--gg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GD 220 (265)
|.+|.++.++|.+|+..||.+.+.++|++| +.|+.| .+..+.|.+.++.+|+.+++..+.+....+.+.+|.+.|+
T Consensus 2 e~eI~~l~~~w~~ai~tgD~~~~~~ly~~d--~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 2 EQEIAALFDRWNDAIQTGDPETYAKLYAPD--VAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHEEEE--EEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHhhhcCCC--eeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 679999999999999999999999999997 778888 5677899999999999988765555677888888887555
Q ss_pred -EEEEEEEEEEec---CCcc-eeeEEEEEEEEEeCCeEEEEEEeeCCC
Q 024630 221 -VGYVTCIEFVRT---KGTS-WGGQFVTNVFEKLDGQWFICIHHASPV 263 (265)
Q Consensus 221 -vA~Vt~~e~v~~---~G~~-~g~~raTnVfrR~dG~WrIVhhHaSp~ 263 (265)
.|+.++...... +|.+ ....+.|.||+|.+|+|+|+|||.|+|
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivhhHsS~m 127 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVHHHSSAM 127 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEEEecCCC
Confidence 999997766553 3444 346799999999999999999999986
No 5
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=99.57 E-value=7e-14 Score=106.15 Aligned_cols=104 Identities=24% Similarity=0.414 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVT 225 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt 225 (265)
|.++.++|.+|++++|+++++++|++| .++++|+|..+ |++++.+.|...+.. ...+++.++.|.+.||+|+++
T Consensus 1 I~a~~~~~~~A~~~~D~~~~~~~~~~d--~~~~~~~g~~~-~~~~~l~~~~~~~~~---~~~~~~~~~~v~~~gd~a~~~ 74 (107)
T PF14534_consen 1 IRALEEQYEDAFNAGDIDALASLYADD--FVFVGPGGTIL-GKEAILAAFKSGFAR---FSSIKFEDVEVRVLGDTAVVR 74 (107)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHTTEEEE--EEEEETTSEEE-EHHHHHHHHHHHCEE---EEEEEEEEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHhCCHHHHHhhhCCC--EEEECCCCCEe-CHHHHHHHHhhccCC---CceEEEEEEEEEEECCEEEEE
Confidence 678999999999999999999999986 77888988665 999999999874432 245666777888889999999
Q ss_pred EEEEEec--CCcc-eeeEEEEEEEEEeCCeEEE
Q 024630 226 CIEFVRT--KGTS-WGGQFVTNVFEKLDGQWFI 255 (265)
Q Consensus 226 ~~e~v~~--~G~~-~g~~raTnVfrR~dG~WrI 255 (265)
+...+.. +|.+ ....+.|.||+|++|+|||
T Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 75 GRWTFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 9888775 3322 3467999999999999997
No 6
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=99.39 E-value=6.5e-12 Score=103.58 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=82.0
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeC-C
Q 024630 142 SKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRG-N 220 (265)
Q Consensus 142 sk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~G-D 220 (265)
-.++|.++..+|.+|+..+|+++|+++++++++.+-+.. +..+.|.++|++ |+.....+ ++.-++....|+..| |
T Consensus 8 v~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~-~E~LyG~~aI~a-FR~~R~~~--~~~R~l~~~~itt~G~d 83 (125)
T PF11533_consen 8 VVAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGA-GENLYGHDAIRA-FRAARPGG--GPARTLERTVITTFGRD 83 (125)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEET-TEEEESHHHHHH-HHHHS--T--TTT-EEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECC-CccccCHHHHHH-HHhcCCCC--CCCcEEEEEEEEEecCc
Confidence 468999999999999999999999999999998876644 468999999985 77655322 234455666665554 5
Q ss_pred EEEEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEeeCCCC
Q 024630 221 VGYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHHASPVD 264 (265)
Q Consensus 221 vA~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhHaSp~~ 264 (265)
.|++.. |+...+.+ ..-|.|++|.|.+++||||.-|.|.++
T Consensus 84 ~A~v~t-ef~r~~~~--~~GRQsQtWvr~~~gWrIvaAHVS~~~ 124 (125)
T PF11533_consen 84 FATVST-EFRRDGSG--RIGRQSQTWVRFPDGWRIVAAHVSLMD 124 (125)
T ss_dssp EEEEEE-EEEETTEC--CEEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred eEEEEE-EEEECCCC--ceeEeEEEEEECCCCEEEEEEEEeecc
Confidence 776654 34443222 335888899999999999999999875
No 7
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=99.07 E-value=3.1e-09 Score=88.08 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=90.1
Q ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC-CCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeC
Q 024630 141 DSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP-GASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRG 219 (265)
Q Consensus 141 Dsk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP-gg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~G 219 (265)
-.+.+|.++.++|.+++..||++-+.+.|++|. +.++. +..+...+.+|+++|..++..-+ ...|+-+ .|.++-
T Consensus 34 ~t~~~vAaLFdrWN~~L~TGdP~kV~anyApDa--VLLPT~Sn~vR~s~~ei~DYF~~FLk~KP-qG~IdsR--~i~~gc 108 (156)
T COG4875 34 VTEREVAALFDRWNAALTTGDPNKVAANYAPDA--VLLPTMSNQVRSSRSEILDYFSHFLKLKP-QGYIDSR--KITLGC 108 (156)
T ss_pred ccHHHHHHHHHHHHhhhhcCChHHHHhhcCCce--EeecccccccccCHHHHHHHHHHHhccCC-cceecce--eEEecc
Confidence 347789999999999999999999999999984 33433 44556788999999999886433 2345544 455777
Q ss_pred CEEEEEEE-EEEecCCcceeeEEEEEEEEEeCCeEEEEEEeeCCC
Q 024630 220 NVGYVTCI-EFVRTKGTSWGGQFVTNVFEKLDGQWFICIHHASPV 263 (265)
Q Consensus 220 DvA~Vt~~-e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhHaSp~ 263 (265)
+.|.-++. .+.-.+|.. ...|+|.+|..++|.|.|++||+|.|
T Consensus 109 N~AlD~GtYTF~f~DGs~-v~ARYtftY~w~~g~WlI~~HHSSAM 152 (156)
T COG4875 109 NNALDAGTYTFIFTDGSN-VQARYTFTYSWIDGTWLIVNHHSSAM 152 (156)
T ss_pred ccccccceEEEEEcCCcc-eeEEEEEEEEecCCeEEEEecccccC
Confidence 88887754 334456753 34699999999999999999999987
No 8
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=99.04 E-value=1.6e-08 Score=79.72 Aligned_cols=115 Identities=19% Similarity=0.335 Sum_probs=86.3
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCC--CCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeC
Q 024630 142 SKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA--SGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRG 219 (265)
Q Consensus 142 sk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg--~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~G 219 (265)
.+++|.++...|..++..+|.+.+.++|++|. ++..++. ..+.|+++|.+.++..+.... .....+.+..|.+.|
T Consensus 5 d~~~I~~l~~~~~~~~D~~~~~~~~~lft~d~--~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~-~~~H~~~~~~v~~dg 81 (127)
T PF13577_consen 5 DRAAIRDLIARYARALDTGDWEEWADLFTEDA--VFDFPGFGFGRYRGRDAIRAFLRARFDGFA-ATRHMVTNPVVDVDG 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHTTEEEEE--EEEETTTCEEEEESHHHHHHHHHHHHHHEE-EEEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHhccCCcE--EEEEeCccccccCCHHHHHHHHHHhccccc-ceeEEccceEEEEcC
Confidence 36799999999999999999999999999974 3344543 578999999999998875432 344555666777899
Q ss_pred CEEEEEEEEEEe----cCCcc--eeeEEEEEEEEEeCCeEEEEEEe
Q 024630 220 NVGYVTCIEFVR----TKGTS--WGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 220 DvA~Vt~~e~v~----~~G~~--~g~~raTnVfrR~dG~WrIVhhH 259 (265)
|.|.+.+.-... .+|++ ....++++.|+|++|+|||.+.+
T Consensus 82 d~A~~~~~~~~~~~~~~~g~~~~~~~g~y~~~~~r~~g~W~i~~~~ 127 (127)
T PF13577_consen 82 DTATVRSYVLATHRDPDDGEPALWSGGRYTDELVREDGGWRISSRT 127 (127)
T ss_dssp TEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEEECCEEEEEEEC
Confidence 999887443332 24432 33469999999999999998753
No 9
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=98.98 E-value=2.7e-08 Score=74.08 Aligned_cols=96 Identities=20% Similarity=0.332 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEEEEEEE
Q 024630 151 ARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVTCIEFV 230 (265)
Q Consensus 151 ~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt~~e~v 230 (265)
++|++|++++|++++.++|++| ++...| +..+.|++++++.|+..+...+ +..+++. .+...||.+++......
T Consensus 2 ~~~~~a~~~~d~~~i~~~~~~d--~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~gd~v~~~~~~~~ 75 (102)
T PF12680_consen 2 RRFFEAWNAGDLDAIAALFAPD--AVFHDP-GGTLRGREAIREFFEEFFESFP-DIRFEIH--DIFADGDRVVVEWTVTG 75 (102)
T ss_dssp HHHHHHHHTTHHHHHHHTEEEE--EEEEET-TSEEESHHHHHHHHHHHHHHEE-EEEEEEE--EEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHcCCHHHHHHHcCCC--EEEEeC-CCcccCHHHHHHHHHHHHhcCC-ceEEEEE--EEEEcCCEEEEEEEEEE
Confidence 6899999999999999999997 677788 5569999999999999987442 3555655 45899999888765554
Q ss_pred e--cCCcceeeEEEEEEEEEeCCeE
Q 024630 231 R--TKGTSWGGQFVTNVFEKLDGQW 253 (265)
Q Consensus 231 ~--~~G~~~g~~raTnVfrR~dG~W 253 (265)
. .+| ....++...+|+-+||.+
T Consensus 76 ~~~~~g-~~~~~~~~~~~~~~dgkI 99 (102)
T PF12680_consen 76 TTPPTG-QPISFRGCSVFRFEDGKI 99 (102)
T ss_dssp EETTTS-CEEEEEEEEEEEEETTEE
T ss_pred EEcCCC-CEEEEEEEEEEEEECCEE
Confidence 2 233 334568888999999954
No 10
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.63 E-value=2.5e-06 Score=64.73 Aligned_cols=111 Identities=18% Similarity=0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCC----CCccCHHHHHHHHHHHHhccCcceEEE-EEeEEEEEeCC-
Q 024630 147 LAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA----SGISGYDPVMESWEVVWMNYEFPLAIE-LKNVRVHVRGN- 220 (265)
Q Consensus 147 ~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg----~~l~Gr~aI~aswe~vfa~~~~pl~ie-l~dv~V~v~GD- 220 (265)
.++..+|+.++..+|.+.+..+|+++ +++..|++ ....|++++++.++...... +.... +..+++...++
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d--~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~--~~~~h~~~~~~~~~~~~~ 77 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADD--AYFEPPGGDGLIYPDDGREAIEDRVRRLPFGP--SRTRHLVSNVDVQPGDDG 77 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCc--EEEEEccCCEEEEcCChHHHHHHHHHhcCCCC--CceEEEEEeEEEEeCCCC
Confidence 45778899999999999999999987 44445653 57789999999998776421 12333 35666665544
Q ss_pred EEEEEE-EEEEecCC--cc-eeeEEEEEEEEEeCCeEEEEEEeeC
Q 024630 221 VGYVTC-IEFVRTKG--TS-WGGQFVTNVFEKLDGQWFICIHHAS 261 (265)
Q Consensus 221 vA~Vt~-~e~v~~~G--~~-~g~~raTnVfrR~dG~WrIVhhHaS 261 (265)
.+.+.. ...+...+ .. .-....+..+++.+|+|||...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~ 122 (124)
T cd00531 78 EGVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFR 122 (124)
T ss_pred EEEEEEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEe
Confidence 444332 22333322 22 2345788889999999999998764
No 11
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=98.54 E-value=4.7e-06 Score=65.81 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC-CCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEE
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP-GASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVG 222 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP-gg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA 222 (265)
.++.++.++|++|+++||++++.++|++| +++..| +..++.|++++++.|...+.... .+++....+.+.|+.+
T Consensus 3 ~~~~~~v~~~~~a~~~~D~~~~~~l~aed--~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~---~~~~~~~~~~~~g~~~ 77 (122)
T cd00781 3 QEMKAAVQRYVEAVNAGDPEGIVALFADD--ATVEDPVGSPPRSGRAAIAAFYAQSLGGAK---RLELTGPVRASHGGEA 77 (122)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHcCCC--eEEeCCCCCCCccCHHHHHHHHHHHhccCc---eEEecCceeeecCCEE
Confidence 46777889999999999999999999998 554555 44578999999999998776422 3443333345667776
Q ss_pred EEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEe
Q 024630 223 YVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 223 ~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhH 259 (265)
.+.....+...|.+ .......+|+-.+ ..||+.+.
T Consensus 78 ~~~~~~~~~~~g~~-~~~~~~~v~~~~~-dGkI~~~~ 112 (122)
T cd00781 78 AFAFRVEFEWEGQP-CVVRVIDVMRFDA-DGRIVSMR 112 (122)
T ss_pred EEEEEEEEEeCCce-EEEEEEEEEEECC-CccChHHH
Confidence 66544344444422 3345555676642 24665543
No 12
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=98.50 E-value=2e-06 Score=68.73 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHH--hccCcceEEEEEeEEEEEeCC
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVW--MNYEFPLAIELKNVRVHVRGN 220 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vf--a~~~~pl~iel~dv~V~v~GD 220 (265)
+.+|.++.+.|.+++..||.+.|.+++.++..+..+..+.......++..+.....- .....+...++. .+.+.|+
T Consensus 3 ~~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~--~i~i~g~ 80 (116)
T PF12893_consen 3 EAAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESIL--SIDIDGD 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEE--EEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEE--EEEEECC
Confidence 578999999999999999999999999999777666533333445566665555431 111122344444 5668899
Q ss_pred EEEEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEE
Q 024630 221 VGYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIH 258 (265)
Q Consensus 221 vA~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhh 258 (265)
+|.+...-... + ....=...+.|.+|+|||++-
T Consensus 81 ~A~a~v~~~~~--~---~~~~d~~~L~K~dg~WkIv~k 113 (116)
T PF12893_consen 81 VASAKVEYEFP--G---FWFVDYFTLVKTDGGWKIVSK 113 (116)
T ss_dssp EEEEEEEEEEE--T---EEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEEC--C---CceEEEEEEEEECCEEEEEEE
Confidence 99997654443 2 122222346889999999973
No 13
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.42 E-value=8.9e-08 Score=82.70 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=37.1
Q ss_pred cccccccHHHHHHHHHHHHhccCHHHHHhhhchhhccccc
Q 024630 102 GESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDED 141 (265)
Q Consensus 102 ~~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~D 141 (265)
.+..+++|.+|++.|+++|++||||+||.+||+|+.|+..
T Consensus 131 ~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k 170 (176)
T COG3880 131 KINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAK 170 (176)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4788899999999999999999999999999999999843
No 14
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=98.29 E-value=4.8e-05 Score=60.32 Aligned_cols=105 Identities=11% Similarity=0.060 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCC-CCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCC-EEEEE
Q 024630 148 AANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA-SGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGN-VGYVT 225 (265)
Q Consensus 148 aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg-~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GD-vA~Vt 225 (265)
++..+|++|++++|++++.++|++| +++..|++ .+..|++++++.++.++...+ ...+++.+ +...++ .+++.
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~i~~--~~~~~~~~v~~~ 76 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAED--VLYDDNQGGRVLGGKAQLARFLAPYRTAFP-DLLVDVVV--CRNDEGVRVAAE 76 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCC--eEEEcCCCCcEeccHHHHHHHHHHHHHhCc-hhhceeEE--EEecCCcEEEEE
Confidence 4567899999999999999999998 55555654 456789999999998887643 24555553 334444 44443
Q ss_pred EEEEEecCCc-----c---eeeEEEEEEEEEeCCeEEEEEEe
Q 024630 226 CIEFVRTKGT-----S---WGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 226 ~~e~v~~~G~-----~---~g~~raTnVfrR~dG~WrIVhhH 259 (265)
..-.....|. + .-....-.+|+-.+|. |+.++
T Consensus 77 ~~~~g~~~g~~~g~~~~g~~~~~~~~~~~~~~~gk--I~~~~ 116 (129)
T TIGR02096 77 WTVHGTYRTAFLGLPASGKTYSIRGVTFFVFDDGK--IKRET 116 (129)
T ss_pred EEEeeeeccccCCCCCCCCEEEeeeeEEEEEeCCE--EEEEE
Confidence 3222221111 1 2235777788888884 55544
No 15
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=98.24 E-value=6.4e-07 Score=58.81 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
.|.+|+++|++|++++|||+||.|||+|..|+.
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 478899999999999999999999999998863
No 16
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=98.21 E-value=4.8e-05 Score=70.36 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEec-CCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCE
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVH-PGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNV 221 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vh-Pgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDv 221 (265)
.++..++.++|++||++||++++.+++++| +++.. +++.++.|+++|...|..++..... -.+++.. +.+.|+.
T Consensus 203 ~~~~~~~v~~~~~a~~~gD~~~l~~Lla~D--v~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~-~~~~~~~--~~~~g~~ 277 (324)
T TIGR02960 203 SPEEQDLLERYIAAFESYDLDALTALLHED--AIWEMPPYTLWYQGRPAIVGFIHTVCPGEGA-AGMRLLP--TIANGQP 277 (324)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHhcCC--eEEEcCCCCcceeCHHHHHHHHHHhcccccC-CceeEEE--eeecCCc
Confidence 356788999999999999999999999998 44444 4667899999999998887321111 1233322 3488998
Q ss_pred EEEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEe
Q 024630 222 GYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 222 A~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhH 259 (265)
+++... ....|. ........||.-.|| ||+...
T Consensus 278 ~~v~~~--~~~~~~-~~~~~~v~~~~~~dG--kI~~~~ 310 (324)
T TIGR02960 278 AAAMYM--RRPDAE-RHTAFQLHVLEIRGG--RITHVT 310 (324)
T ss_pred eEEEEE--EcCCCC-eeeeeEEEEEEEcCC--cEEEEE
Confidence 887652 222221 123455566777777 555544
No 17
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=98.05 E-value=0.00015 Score=67.73 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=71.7
Q ss_pred chhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC-CCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCC
Q 024630 142 SKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP-GASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGN 220 (265)
Q Consensus 142 sk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP-gg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GD 220 (265)
..++..++..+|++||++||++++.+++++| +++..| ++.++.|++++++.|...+..... ..+.+. ...+.|+
T Consensus 212 ~~~~~~~~v~~~~~A~~~gD~~~l~~lla~D--v~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~-~~~~~~--~~~~~g~ 286 (339)
T PRK08241 212 DDPEERALLARYVAAFEAYDVDALVALLTED--ATWSMPPFPLWYRGRDAIAAFLAGQCPGAGC-GGSRLV--PTRANGQ 286 (339)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHhcCC--EEEEcCCCCCcccCHHHHHHHHHhhccccCC-CceEEE--EeecCCC
Confidence 3467788899999999999999999999998 444445 445699999999988886432211 122332 2267888
Q ss_pred EEEEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEe
Q 024630 221 VGYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 221 vA~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhH 259 (265)
.+++.... ...| .......-.||+-.|| ||+..+
T Consensus 287 ~v~~~~~~--~~~g-~~~~~~~v~v~~v~dG--kI~~~~ 320 (339)
T PRK08241 287 PAFAQYMR--DPDG-GGHRPWALHVLELRGG--RIAHVT 320 (339)
T ss_pred eEEEEEEE--cCCC-CeeecceEEEEEEeCC--EEEEEE
Confidence 88875421 1223 2223455667888888 444443
No 18
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=97.85 E-value=0.00054 Score=63.11 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCC-------CCccCHHHHHHHHHHHHhccCcceEEEEEeEEEE
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA-------SGISGYDPVMESWEVVWMNYEFPLAIELKNVRVH 216 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg-------~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~ 216 (265)
++-.++.++|++||++||+++|.+++++| ++...+|| .++.|++.|.+.|..++..........+. .+.
T Consensus 171 ~~~~~~v~~f~~A~~~gD~~~l~~Lla~D--v~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~--~~~ 246 (293)
T PRK09636 171 EEGAELVEAFFAALASGDLDALVALLAPD--VVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVR--LAL 246 (293)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHhhC--eEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEE--EEE
Confidence 34566899999999999999999999998 44443332 33689999999998877643211222332 457
Q ss_pred EeCCEEEEEE
Q 024630 217 VRGNVGYVTC 226 (265)
Q Consensus 217 v~GDvA~Vt~ 226 (265)
+.|+-|++..
T Consensus 247 vnG~~a~~~~ 256 (293)
T PRK09636 247 VNGLPGFVTA 256 (293)
T ss_pred ECCceeEEEE
Confidence 8999998874
No 19
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=97.83 E-value=0.00035 Score=55.69 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEEEEEE
Q 024630 150 NARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVTCIEF 229 (265)
Q Consensus 150 ~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt~~e~ 229 (265)
...|.++|+++|++.+.+++++| +.+..|+.....|.+++++.+...+...+ .+.+++. .+.+.||.+++.....
T Consensus 4 ~~~~~~~~n~~d~~~~~~~~~~d--~~~~~~~~~~~~G~~~~~~~~~~~~~afP-D~~~~i~--~~~~~gd~v~~~~~~~ 78 (126)
T PF07366_consen 4 RRFYEEVWNRGDLDALDELVAPD--VVFHDPGPGPPVGREGFKEFLKELRAAFP-DLRFEIE--DVVAEGDRVAVRWTFT 78 (126)
T ss_dssp HHHHHHHHHTT-GCHHHGTEEEE--EEEEGCTTTEEEHHHHHHHHHHHHHHHST-TTEEEEE--EEEEETTEEEEEEEEE
T ss_pred HHHHHHHHhCCCHHHHHHhcCCC--EEEEecCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEE--EEEEECCEEEEEEEEE
Confidence 34555788999999999999997 66666665788999999999998887543 4677666 4578899887765544
Q ss_pred EecCCc-----cee---eEEEEEEEEEeCC
Q 024630 230 VRTKGT-----SWG---GQFVTNVFEKLDG 251 (265)
Q Consensus 230 v~~~G~-----~~g---~~raTnVfrR~dG 251 (265)
-...|+ ++| .++...+|+-++|
T Consensus 79 Gth~g~~~g~~ptgk~v~~~~~~~~~~~~g 108 (126)
T PF07366_consen 79 GTHTGEFMGIPPTGKPVEFRGMSIFRFEDG 108 (126)
T ss_dssp EEESSEBTTBE-TTEEEEEEEEEEEEEETT
T ss_pred EeecCCcCCcCCCCCEEEEEEEEEEEEECC
Confidence 443232 233 3678888888887
No 20
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=97.78 E-value=0.0018 Score=54.28 Aligned_cols=118 Identities=14% Similarity=-0.068 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCC---------------ccCHHHHHHHHHHHHhc------
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG---------------ISGYDPVMESWEVVWMN------ 201 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~---------------l~Gr~aI~aswe~vfa~------ 201 (265)
.++|.+...++..++..+|.+.+.++|++|. ++.+.+.+.. ..|++.+.+..+.+...
T Consensus 3 ~~~I~~ll~~ya~~LD~~~~~~w~~lft~D~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~ 81 (160)
T cd00667 3 QAEVEQFLYREARLLDDRRWDEWLALFAEDC-HYWVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTGRAWSED 81 (160)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHhhcccc-EEEcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcCCccccC
Confidence 5688999999999999999999999999985 3334332211 13777777766655431
Q ss_pred cCcceEEEEEeEEEEE-eCCEEEEEEEEEEe-c--CCcce-eeEEEEEEEEEeCCeEEEEEEeeC
Q 024630 202 YEFPLAIELKNVRVHV-RGNVGYVTCIEFVR-T--KGTSW-GGQFVTNVFEKLDGQWFICIHHAS 261 (265)
Q Consensus 202 ~~~pl~iel~dv~V~v-~GDvA~Vt~~e~v~-~--~G~~~-g~~raTnVfrR~dG~WrIVhhHaS 261 (265)
+......-+.+++|.. .||.|.+...-.+. . +|... -.......++|.+|+|||.+....
T Consensus 82 ~~~~~rH~vsn~~i~~~~~d~a~~~s~~~v~~~~~~~~~~~~~g~~~d~~~r~~~~wri~~R~~~ 146 (160)
T cd00667 82 PPSRTRHLVSNVRVLEGDGGEIEVRSNFVVVRTRLDGESDVFAGGRYDDLRRSEDGLRIASRRVV 146 (160)
T ss_pred CCCcceEEEccEEEEecCCCEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEEEcCCeEEEEEEEEE
Confidence 1122355667777765 57887776543332 2 22221 123456678888999999988764
No 21
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=97.73 E-value=0.0011 Score=52.27 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCC-CccCHHHHHHHHHHHHhccCcceEEEEEeEEEE--E-eCCE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGAS-GISGYDPVMESWEVVWMNYEFPLAIELKNVRVH--V-RGNV 221 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~-~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~--v-~GDv 221 (265)
.....++||++|.++|.+.|.++|+++ .+++++.+. .+.|+++|.+.|...-... .++.+..+... . ..+.
T Consensus 2 ~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~--~s~~~~~~~~~~~G~~~I~~~~~~l~~~~---~~~~i~~~d~qp~~~~~~~ 76 (118)
T PF02136_consen 2 ANSFVQQYYQLFDSGDREGLHKLYHDD--ASFLTWNGNRPVVGREAIQEFFQSLPATG---VQHRITSVDCQPSPSSDGS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTHGGGGGGGEEEE--EEEEEETTECEEESHHHHHHHHHHHTTSS---EEEEEEEEEEEEEEECCSE
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHcCC--CeeecCCCchhhhhHHHHHHHHhcCCCcc---cEEEecccccccccccCCc
Confidence 356778999999999999999999754 556677777 8899999999998865432 36666666666 3 3344
Q ss_pred EEEEEEEEEecCCcc-eeeEEEEEEEEEeCCeEEEEEE
Q 024630 222 GYVTCIEFVRTKGTS-WGGQFVTNVFEKLDGQWFICIH 258 (265)
Q Consensus 222 A~Vt~~e~v~~~G~~-~g~~raTnVfrR~dG~WrIVhh 258 (265)
.++++.-.+..++.+ .-....|-|+...+++|.|...
T Consensus 77 i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd 114 (118)
T PF02136_consen 77 ILITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIAND 114 (118)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEee
Confidence 444444445544433 2345666677778889998754
No 22
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.66 E-value=0.0024 Score=53.04 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHH-HHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEE
Q 024630 147 LAANARFYDSFKNGDLAT-MQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVT 225 (265)
Q Consensus 147 ~aa~~afy~Af~aGDldA-L~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt 225 (265)
.+...+|.+|+..+|+++ +..+.+++ .++...+-++++|++++++.++.+... ...++++-.++...|++.+..
T Consensus 4 ~~vV~~F~~a~~~~D~~~a~~~~~~~d--~vy~Nvplp~i~G~~~~~~~l~~~~~~---~~~~e~~i~~iaadg~~VltE 78 (125)
T PF07858_consen 4 EEVVRAFLAALEDRDVDAALASLFDDD--AVYHNVPLPPIRGRDAIRAFLRGFLDS---LSGFEFDIHRIAADGDVVLTE 78 (125)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHCEECC---EEEETTTEEEESHHHHHHHHHCCHCC---CEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhcCCC--cEEEeCCCCCcccHHHHHHHHHHHhcc---cceeEEEEEEEeecCCEEEEE
Confidence 457788999999999775 45555554 444556667899999999988877432 246666666777888887765
Q ss_pred EEEEEe-cCCcceeeEEEEEEEEEeCCe
Q 024630 226 CIEFVR-TKGTSWGGQFVTNVFEKLDGQ 252 (265)
Q Consensus 226 ~~e~v~-~~G~~~g~~raTnVfrR~dG~ 252 (265)
-...+. .+|+....+-++-||+=+||.
T Consensus 79 R~D~l~~~dG~~~~~~~V~GvfEv~dGk 106 (125)
T PF07858_consen 79 RTDVLRFADGPLRIQFPVCGVFEVRDGK 106 (125)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEETTE
T ss_pred eEeeeeeecCCeEEEEEEEEEEEEECCE
Confidence 444444 367666677888999999993
No 23
>PLN02382 probable sucrose-phosphatase
Probab=97.50 E-value=0.0038 Score=60.98 Aligned_cols=109 Identities=10% Similarity=0.145 Sum_probs=80.2
Q ss_pred HHHHHHHcCC-------HHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccC-cceEEEEEeEEEE-EeCCEE
Q 024630 152 RFYDSFKNGD-------LATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYE-FPLAIELKNVRVH-VRGNVG 222 (265)
Q Consensus 152 afy~Af~aGD-------ldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~-~pl~iel~dv~V~-v~GDvA 222 (265)
.|++.|.+|+ +++|++.++++ -+.|||.|.. ..+.+..+.++...+.-+ ..+.|.+.++++. ++.|.+
T Consensus 292 ~~~e~W~~~~~~~~~~~~~~l~~~~~p~--~~~v~p~G~~-~~~~~~~~~~~~~~G~~~g~~~~i~vd~~~~~~~~~~~~ 368 (413)
T PLN02382 292 LFYEKWRRGEVENSDEVFQRLKSSCAPN--GVFVHPSGVE-KSLHDSIDELRSCYGDKKGKKFRVWVDRVLSTQLGPDTW 368 (413)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHhcCCC--eeEECCCccc-CCHHHHHHHHHHhhCCCCCCEEEEEEeeEEEEEEcCCeE
Confidence 4567777877 78899999886 7889999854 466777788888775433 2378898888775 677788
Q ss_pred EEEEEEEEecCCcceeeEEEEEEEEEe---CCeEEEEEEeeCCCC
Q 024630 223 YVTCIEFVRTKGTSWGGQFVTNVFEKL---DGQWFICIHHASPVD 264 (265)
Q Consensus 223 ~Vt~~e~v~~~G~~~g~~raTnVfrR~---dG~WrIVhhHaSp~~ 264 (265)
+|...+.-..+| ....-+.|.||++. .++++..|.|.++++
T Consensus 369 ~v~~~e~q~~~~-~~~~~~ttavl~~~~~~~~~~~W~hlheTw~~ 412 (413)
T PLN02382 369 LVKFDKWEQSGD-ERKCCLTTALLTSKEDTPNGLEWMHVHQTWLE 412 (413)
T ss_pred EEEEeeeeecCC-cceeEEEEEEEeeCCCCCCCeEEEEeeecccC
Confidence 888776655534 33345899999986 577777888887764
No 24
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=97.49 E-value=0.0009 Score=51.35 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEE
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVG 222 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA 222 (265)
...+..+...|+.|+..||.+.+.++..++..- ...+......-...+........... ..+...++.....||.|
T Consensus 6 ~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~g~~A 81 (111)
T PF12870_consen 6 SSTPEEVVKNFFDALKNGDYEKAYAYLSPESRE-PEKAKEDFEQFEKQFASEMKKKYKKI---GSIKIVEVEENTIGDTA 81 (111)
T ss_dssp ---HHHHHHHHHHHHCTT-HHHHHHTB--TT---SHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEEEEEEEEEESSEE
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHhhCccccc-hhHHHHHHHHHHHHHHHHHHHhhhcc---CceEEEEEEEeccCCEE
Confidence 345677888999999999999999998776321 00000000000011111122212111 12222222211119999
Q ss_pred EEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEE
Q 024630 223 YVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFIC 256 (265)
Q Consensus 223 ~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIV 256 (265)
.|+..... .+|.. ...+..+.|+||.|||+
T Consensus 82 ~V~v~~~~-~~g~~---~~~~~~lvk~dg~Wkv~ 111 (111)
T PF12870_consen 82 TVTVKITY-KDGKE---KTFTVPLVKEDGKWKVC 111 (111)
T ss_dssp EEEEEEEE-TTS-E---EEEEEEEEEETTEEEE-
T ss_pred EEEEEEEE-CCCCe---eEEEEEEEEECCEEEeC
Confidence 99866443 33432 23455689999999985
No 25
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=97.45 E-value=0.0072 Score=55.57 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEe-cCCC------CCccCHHHHHHHHHHHHhccCcceEEEEEeEEE
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCV-HPGA------SGISGYDPVMESWEVVWMNYEFPLAIELKNVRV 215 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~v-hPgg------~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V 215 (265)
.++-.++.++|.+|+..||+++|.++.++| ++.. ++|| .++.|++.|...|..++.....+..+.+ +
T Consensus 163 ~~~~~~~~~~f~~a~~~gD~~~l~~lL~~d--v~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~----~ 236 (281)
T TIGR02957 163 REESRQLLERFVEAAQTGDLDGLLELLAED--VVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDP----V 236 (281)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc--eEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEE----E
Confidence 345667899999999999999999999998 4444 2233 3588999999988877653222233332 2
Q ss_pred EEeCCEEEEEE
Q 024630 216 HVRGNVGYVTC 226 (265)
Q Consensus 216 ~v~GDvA~Vt~ 226 (265)
.+.|.-|++..
T Consensus 237 ~vnG~p~~~~~ 247 (281)
T TIGR02957 237 DVNGQPAVLVR 247 (281)
T ss_pred EECCCceEEEE
Confidence 57777777654
No 26
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=97.41 E-value=0.0096 Score=51.78 Aligned_cols=122 Identities=12% Similarity=0.023 Sum_probs=75.8
Q ss_pred ccccchhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC-CCCCccC--------------------HHHHHHHHH
Q 024630 138 LDEDSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP-GASGISG--------------------YDPVMESWE 196 (265)
Q Consensus 138 l~~Dsk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP-gg~~l~G--------------------r~aI~aswe 196 (265)
+..+.+.+|.+...++..++..+|++...++|++|. .+.-| .+....| ++.+++...
T Consensus 14 ~~~~~~~eI~~~l~~eA~lLD~~d~~~Wl~lft~D~--~Y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Rv~ 91 (183)
T PRK10069 14 VSLELHHEISQFLYREARLLDEWRYDDWLALLAEDI--HYTMPMRTTVNAQRRDRREGVQTPPTMAWFDDNKDQLERRVA 91 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHhchhhHHHHHHhhcccc--EEEccccccccccccccccccCCCcccEEEcCCHhHHHHHHH
Confidence 334556788999999999999999999999999984 33333 2223332 355555444
Q ss_pred HHHh------ccCcceEEEEEeEEEEE-e-CCEEEEEEEEEE-ecCCc---ceeeEEEEEEEEEeCCeEEEEEEeeC
Q 024630 197 VVWM------NYEFPLAIELKNVRVHV-R-GNVGYVTCIEFV-RTKGT---SWGGQFVTNVFEKLDGQWFICIHHAS 261 (265)
Q Consensus 197 ~vfa------~~~~pl~iel~dv~V~v-~-GDvA~Vt~~e~v-~~~G~---~~g~~raTnVfrR~dG~WrIVhhHaS 261 (265)
.... .+......-+.+++|.. . +|.|.+.....+ ...++ .....++...|++.+|+|||......
T Consensus 92 rl~~~~~~s~~p~~rtrH~vsNv~V~~~~~~d~a~vrS~~~v~~~~~~~~~~~~~G~y~D~l~r~~~gwrI~~R~v~ 168 (183)
T PRK10069 92 RLETGMAWAEEPPSRLRHLITNVRVEETDIPDEFAVRSNFLLYRSRGERDEDFLVGRREDVLRREGDGWRLARRRIV 168 (183)
T ss_pred HHhCCCccccCCCCcceEEEeeEEEEecCCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEEcCCEEEEEEEEEE
Confidence 4431 22122346667777753 3 467777643333 22222 11223666889999999999987754
No 27
>COG4538 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0022 Score=51.41 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEE
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGY 223 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~ 223 (265)
+++....++-.+|+|+||++++++-|++|..++-+ |+-..-.|-++|+..+...|+.+. ..+++.+ +|.+ |. +
T Consensus 3 te~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~f-~a~~~~gg~aaira~y~e~FaEp~--~~~~ll~-Rv~v-Gs--~ 75 (112)
T COG4538 3 TEPEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTTF-DALDGDGGTAAIRAAYGEQFAEPA--PEISLLD-RVSV-GS--Y 75 (112)
T ss_pred cchhHHHHHHHHhhccccHHHHHhhcccceEEEec-ccccccCcHHHHHHHHHHHhcCCC--ccceeee-eEEe-cc--E
Confidence 56777888899999999999999999998544433 333334588999999999997632 4666655 3333 33 3
Q ss_pred EEEEEEEe
Q 024630 224 VTCIEFVR 231 (265)
Q Consensus 224 Vt~~e~v~ 231 (265)
|+-.|++.
T Consensus 76 ViDHEhvt 83 (112)
T COG4538 76 VIDHEHVT 83 (112)
T ss_pred Eecceeec
Confidence 44556665
No 28
>PF12707 DUF3804: Protein of unknown function (DUF3804); InterPro: IPR024525 Structural alignments indicate that this family of functionally uncharacterised proteins carry an NTF2-fold with a hydrophobic cavity. Family members also contain two highly conserved tryptophan residues toward their C-terminal ends.; PDB: 3HZP_A.
Probab=97.17 E-value=0.008 Score=49.58 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCC--CceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeE----EEE
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARG--DNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNV----RVH 216 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdD--d~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv----~V~ 216 (265)
+.+|.++.+.|.. .+.|.++..+. ++...+.|.|.++. .+.|+.++..+. +..+..++ +..
T Consensus 3 ~~~i~~li~~fa~------~~~~~sFl~~N~T~DFLfIRPSGNPI~-----a~G~~~M~~s~D--vv~e~sEl~kIhrlE 69 (128)
T PF12707_consen 3 KQEIESLIEEFAN------REQMKSFLIDNATPDFLFIRPSGNPID-----AKGFEGMMDSGD--VVQESSELIKIHRLE 69 (128)
T ss_dssp HHHHHHHHHHHSS------TTTTTTHHHHHB-TT--EE-TTS-EE------HHHHHHHHTSSS--EEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhC------HHHhhhhhhcCCCcceEEEcCCCCccc-----hhHHHHhhccCc--eeeeehheeeeeeEE
Confidence 4567777777733 22333333222 34677889888763 356777775543 44444332 223
Q ss_pred E-eCCEEEEE--EEEEEecCCcce-eeEEEEEEEEEeCCeEEEEEEeeCCC
Q 024630 217 V-RGNVGYVT--CIEFVRTKGTSW-GGQFVTNVFEKLDGQWFICIHHASPV 263 (265)
Q Consensus 217 v-~GDvA~Vt--~~e~v~~~G~~~-g~~raTnVfrR~dG~WrIVhhHaSp~ 263 (265)
+ ++|.|+.. ..+....+|.+. ....+|.+|.|+||.|++.--|-|..
T Consensus 70 ~l~~~~a~~~ftl~~~FsYKG~~NdDl~~~T~IFKKvdg~Wk~~WmqRSsG 120 (128)
T PF12707_consen 70 FLSDDWAMCAFTLGEKFSYKGTPNDDLSTYTSIFKKVDGVWKISWMQRSSG 120 (128)
T ss_dssp ESSSSEEEEEEEEEEEEEETTEEEEEB-EEEEEEEEETTEEEEEEEEE--S
T ss_pred ecCCCeEEEEEEecceeEecCCcCCchhHHHHHHhhcCCeEEEEEEeeccC
Confidence 4 56677654 445556678763 35699999999999999999998854
No 29
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=96.71 E-value=0.11 Score=41.47 Aligned_cols=107 Identities=13% Similarity=0.135 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeC-CEEEEE
Q 024630 147 LAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRG-NVGYVT 225 (265)
Q Consensus 147 ~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~G-DvA~Vt 225 (265)
..-...||..+. .|.+.|..+|.++ ..+.+++.....|.++|.+.+...-. ...++++..+.+.... +..++.
T Consensus 7 ~~Fv~~YY~~l~-~~~~~L~~fY~~~--s~~~~~~~~~~~g~~~I~~~l~~lp~---~~~~~~i~~~d~q~~~~~~ili~ 80 (119)
T cd00780 7 KAFVQQYYSIFD-NNREGLHRLYGDT--SMLSREGMKQVTGRDAIVEKLSSLPF---QKTKHKITTVDSQPTPSGGVIVM 80 (119)
T ss_pred HHHHHHHHHHHh-cCHHHHHhhcCCC--cEEEECCceEecCHHHHHHHHHhCCC---cceEEEEEEEeeeEcCCCCEEEE
Confidence 345677888888 8899999999997 45556664678899999997765332 1245666666555443 222222
Q ss_pred EEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEe
Q 024630 226 CIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 226 ~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhH 259 (265)
..-.+..++...-....|-++.+.+++|.|...-
T Consensus 81 V~G~~~~~~~~~~~F~q~F~L~~~~~~~~I~nD~ 114 (119)
T cd00780 81 VTGSLKLDEQPPRKFSQTFVLAPQNGGYFVLNDI 114 (119)
T ss_pred EEEEEEECCCCceeEeEEEEEEecCCeEEEEeeE
Confidence 2222333333333456677777788999998654
No 30
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=96.68 E-value=0.055 Score=50.36 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEE
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGY 223 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~ 223 (265)
++-.++.++|.+|+..||+++|.+|.++|..---..|...++.|.+.|...|...+.. + ...+. -+.+.|.-|+
T Consensus 174 ~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~~-~-~~~~~----~~~~ng~p~~ 247 (290)
T PRK09635 174 AQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSH-P-ATVLV----AQPVCGQPAV 247 (290)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhcc-C-ceEEE----EeeeCCCceE
Confidence 3456789999999999999999999999842111113345778999999988776532 1 12222 3467888777
Q ss_pred EEE
Q 024630 224 VTC 226 (265)
Q Consensus 224 Vt~ 226 (265)
+..
T Consensus 248 ~~~ 250 (290)
T PRK09635 248 LAF 250 (290)
T ss_pred EEE
Confidence 754
No 31
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.081 Score=43.74 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEEEEEE
Q 024630 150 NARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVTCIEF 229 (265)
Q Consensus 150 ~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt~~e~ 229 (265)
.+-+..+|++|-++.-.+++.+. .+. |-. ..-.|++.+.+.|..+|...+ .++..-+++...||+.+++....
T Consensus 12 ~~~y~~~~~~g~veka~a~~vd~-YiQ--Hnp-~vpdGk~~fv~fFt~ffk~~P---~~~~kiVr~iadGdLV~vh~hqt 84 (129)
T COG4922 12 IQFYRTLFEAGEVEKADAYLVDR-YIQ--HNP-MVPDGKDGFVRFFTEFFKEKP---RISTKIVRVIADGDLVTVHYHQT 84 (129)
T ss_pred HHHHHHHHHCCCHHHhhhhhhhH-HHh--cCC-CCCCchHHHHHHHHHHHHhCc---cccceeeEEeccCCEEEEEEeee
Confidence 33444789999999999998843 222 322 245899999999999996543 46777779999999999998877
Q ss_pred EecCCcceeeEEEEEEEEEeCCeEEEEEEeeCCC
Q 024630 230 VRTKGTSWGGQFVTNVFEKLDGQWFICIHHASPV 263 (265)
Q Consensus 230 v~~~G~~~g~~raTnVfrR~dG~WrIVhhHaSp~ 263 (265)
+...|.. ....+..||-.|| +|+ .|+.++
T Consensus 85 ~~~pg~~--~~v~~DtfR~ddg--kiv-EHWDvi 113 (129)
T COG4922 85 VSEPGSY--TTVTFDTFRIDDG--KIV-EHWDVI 113 (129)
T ss_pred eCCCCcc--eeEEEEEEEeeCC--cee-eccchh
Confidence 7655532 2355667888888 655 455444
No 32
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=96.27 E-value=0.04 Score=44.37 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEE-EEeCCEEEE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRV-HVRGNVGYV 224 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V-~v~GDvA~V 224 (265)
...+.++|.+||++||.++|..+-++.. .-..+.++..+.++.++..-. .-.+++....+ ...++.+.+
T Consensus 3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~---------k~~~s~~~~~~~~~~i~~~l~-~~~l~v~~~~~~~~~~~~~~~ 72 (118)
T PF05223_consen 3 PEETAEAFLEAWEKGDYAAMYELTSDPS---------KSQYSKEDFVERYQNIYEGLG-AENLKVEAEKVKKDEDDTATV 72 (118)
T ss_dssp --HHHHHHHHHHHTT-HHHHHHTB-HHH---------HHHHHHHHHHTHHHHHHHHHT---EEEEEEEEEEECCTTEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhchhh---------hccccHHHHHHHHHHHHhhCC-ccceEEEeccceecCCCceEE
Confidence 3457789999999999999999865531 122344566667777775322 22344433333 456667777
Q ss_pred EEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEeeC
Q 024630 225 TCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHHAS 261 (265)
Q Consensus 225 t~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhHaS 261 (265)
...-.+...++..-....+.-+++.++.|+| ++..|
T Consensus 73 ~~~~~~~t~~g~~~~~~~~~~l~~~~~~W~V-~W~ps 108 (118)
T PF05223_consen 73 PYTVTMDTPAGGIWTYNYTLTLVKEDDDWKV-DWDPS 108 (118)
T ss_dssp EEEEEEEETTEEE-EEEEEEEEEEETTCEEE----GG
T ss_pred EEEEEEEeCCCCceeeEEEEEEEecCCcEEE-EeCcc
Confidence 7655555433332334556668888999994 44444
No 33
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=0.068 Score=43.99 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=74.1
Q ss_pred chhhHHHHHHHHHHHHH---cCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEE-E
Q 024630 142 SKTSVLAANARFYDSFK---NGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVH-V 217 (265)
Q Consensus 142 sk~aI~aa~~afy~Af~---aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~-v 217 (265)
-+++|.-+..++.+=|. ++-+|++++=+++| .+.+.|+|. +-.++++-+.|+.--+ .+..+.|++++++.- .
T Consensus 5 y~~EiihaH~ai~dWl~~~~adtldal~arfaed--ftMitP~Gv-iLD~~Alg~~frs~ra-crpGl~I~ie~i~l~a~ 80 (130)
T COG4460 5 YSAEIIHAHRAIVDWLVAARADTLDALRARFAED--FTMITPSGV-ILDRDALGDHFRSSRA-CRPGLAISIEDIRLGAQ 80 (130)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHhcC--ceEecCCce-EeccHHHHHHHHhccC-CCCCeEEEEeccccccc
Confidence 35666666666655444 55677777778887 888889875 5578999999988765 344589999988764 4
Q ss_pred eCCEEEEEEEEEEe-cCCcceee-EEEEEEEEEe-CC--eEEEEE
Q 024630 218 RGNVGYVTCIEFVR-TKGTSWGG-QFVTNVFEKL-DG--QWFICI 257 (265)
Q Consensus 218 ~GDvA~Vt~~e~v~-~~G~~~g~-~raTnVfrR~-dG--~WrIVh 257 (265)
..|-|++.+.|.-. ..| ...+ ...|.+..|. .| .||-.|
T Consensus 81 ~~dga~l~YrE~Q~~a~g-~se~~r~stv~l~r~~~grv~WRHLh 124 (130)
T COG4460 81 TEDGAVLLYREAQLRAGG-HSERQRSSTVTLSRSAPGRVEWRHLH 124 (130)
T ss_pred CCCceeeeehHhhhhccC-ccceeeeeEEEEeecCCCceEeeehh
Confidence 45667777777653 334 3233 3556667776 45 688443
No 34
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=95.90 E-value=0.095 Score=43.84 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCC----c-cCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEE
Q 024630 148 AANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASG----I-SGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVG 222 (265)
Q Consensus 148 aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~----l-~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA 222 (265)
+....+|+|+.+||.+.+.+||++| ++...|+.++ . .|.+.+++.+....... ........+++..||--
T Consensus 8 ~~v~~~f~a~~~GD~~~~~~l~a~D--~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~---~~~~~~~~~~~~~gD~~ 82 (133)
T COG3631 8 DLVRRYFAALSRGDLDGLLALLAED--VVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLI---EDGRFTVETVYVSGDPV 82 (133)
T ss_pred hHHHHHHHHHhcCCHHHHHhhccCc--eEEEeeCCCCCccccccchhhhhHHhhhChhhc---ccccccceEEEEcCCce
Confidence 3567899999999999999999998 4445564332 2 35555555444432221 13444455677888854
Q ss_pred EEE--EEEEEecCCcceeeEEEEEEEEEeCCe
Q 024630 223 YVT--CIEFVRTKGTSWGGQFVTNVFEKLDGQ 252 (265)
Q Consensus 223 ~Vt--~~e~v~~~G~~~g~~raTnVfrR~dG~ 252 (265)
.+. +...+...|.+ -..++-.|++=.||+
T Consensus 83 ~~v~~~~~~~~~~G~~-~~~~~~~v~~vrdGr 113 (133)
T COG3631 83 GAVFRTRGRVSRTGKP-YENRYAFVIRVRDGR 113 (133)
T ss_pred EEEEEecCcccccCce-eecceEEEEEEeCCE
Confidence 422 22222223422 224555566666774
No 35
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.65 E-value=0.073 Score=44.24 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEE
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYV 224 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~V 224 (265)
+-....++|.+||..-|.++-.+-|...+. +...+|-+.++|.+...+.|+..++. -+.+++.-+++-..|...+.
T Consensus 7 ~pi~~V~aF~aA~~~~d~~~avr~~~~~d~-v~~n~gis~i~G~~~~ia~l~~~~~~---~~~~ef~I~riAadg~~Vlt 82 (130)
T COG4308 7 EPIRTVEAFLAALQEDDGDAAVRRLGTPDT-VYNNVGISTIHGPAETIALLRPRMAG---ILGFEFKILRIAADGGAVLT 82 (130)
T ss_pred CcHHHHHHHHHHHHhcCccHHHHHhcCCCe-eeccCCcccccchhhhhhhhccccCC---cceeEEEEEEEecccceehh
Confidence 344567899999999999999999987654 45677778899999999999875543 35677766665554443332
Q ss_pred EEEEEEecCCcceeeEEEEEEEEEeCCe
Q 024630 225 TCIEFVRTKGTSWGGQFVTNVFEKLDGQ 252 (265)
Q Consensus 225 t~~e~v~~~G~~~g~~raTnVfrR~dG~ 252 (265)
...-...+|..+..+.++-||+=+||.
T Consensus 83 -ER~D~~~~g~~~~~~~V~GvfEV~~~r 109 (130)
T COG4308 83 -ERLDARIDGPLWVQFWVCGVFEVEDGR 109 (130)
T ss_pred -hhhhhhccCCcEEEEEEEEEEEEeCCE
Confidence 111122467677788999999999984
No 36
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.52 E-value=0.0077 Score=60.98 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=35.4
Q ss_pred ccccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 101 SGESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 101 ~~~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
+....+..+++|+.++.+|.++-+||+||++||+|.+|++
T Consensus 618 ~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 618 SKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456667889999999999999999999999999999875
No 37
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.08 E-value=0.017 Score=59.77 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 105 IMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 105 ~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
+..-+++|+++|++|.++++||+||++||+|+.|+
T Consensus 621 ~~~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 621 LKKLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 33456779999999999999999999999998874
No 38
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=0.096 Score=45.69 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=43.0
Q ss_pred EEEEEeEEEEEeCCEEEEEEEEEEecCCcceeeEEEEEEEEEe-CCeEEEEEEeeCC
Q 024630 207 AIELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQFVTNVFEKL-DGQWFICIHHASP 262 (265)
Q Consensus 207 ~iel~dv~V~v~GDvA~Vt~~e~v~~~G~~~g~~raTnVfrR~-dG~WrIVhhHaSp 262 (265)
.+++.+-.|++.||+|..++.-++..+-+..-..--|.-|.|+ +|.-|||.||+|.
T Consensus 145 ~v~ikNAAi~I~Gd~AtTtGNV~itdk~G~~TtVDKtWaFkKdd~G~lRIv~HHSSL 201 (206)
T COG4337 145 EVRIKNAAIYIDGDLATTTGNVFITDKKGQETTVDKTWAFKKDDQGQLRIVLHHSSL 201 (206)
T ss_pred eeeeeceeEEEeccccceeccEEEEcCCCceEEeeceeeeeccCCCcEEEEEecCCC
Confidence 5777888899999999999877776533232334567778885 6899999999994
No 39
>PRK01617 hypothetical protein; Provisional
Probab=94.77 E-value=0.22 Score=42.79 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEE
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYV 224 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~V 224 (265)
...++..+.|.||..||++-|.+-|.++-. +.. -++++.+ | ..+... +.+++.+..--..++.++|
T Consensus 29 taE~LMRSRYsAy~~~~~dYl~~T~hP~~r-----~~~----~~~~i~~-~---~~~~~w-~~L~Il~~~~g~~~~~g~V 94 (154)
T PRK01617 29 DPEHLMRSRYCAFVMKDADYLIKTWHPDCH-----AAA----WRAEIIA-G---FANTEW-LGLTVFEHTWGDADNEGFV 94 (154)
T ss_pred CHHHHHHHHHHHHHhcccchhhhcCCCccC-----cch----hHHHHhh-c---ccCCEE-eccEEEEecCCCCCceEEE
Confidence 456678889999999999999999987631 111 1122222 1 111111 2223222111122367888
Q ss_pred EEEEEEecCCcce-eeEEEEEEEEEeCCeEEEEE
Q 024630 225 TCIEFVRTKGTSW-GGQFVTNVFEKLDGQWFICI 257 (265)
Q Consensus 225 t~~e~v~~~G~~~-g~~raTnVfrR~dG~WrIVh 257 (265)
.-.-....+|... ..+..+--|+|++|.|+.+.
T Consensus 95 eF~A~y~~~g~~~~~~~~ErS~F~r~~g~W~Yvd 128 (154)
T PRK01617 95 EFVARFTEGGKTGRTAIIERSRFLKENGQWYYID 128 (154)
T ss_pred EEEEEEecCCccccceEEEeeeeEEeCCCEEecC
Confidence 7554444444332 15677778999999999874
No 40
>PRK07883 hypothetical protein; Validated
Probab=94.60 E-value=0.023 Score=57.72 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
=+++|+++|++|.++.+||+||++||+|+.|+.
T Consensus 407 ~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 439 (557)
T PRK07883 407 VLAALRARIDRLAAAERFEEAARLRDRLAALLR 439 (557)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999988873
No 41
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=94.42 E-value=0.026 Score=57.87 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
-+++|+++|++|.++++||+||++||+|..|.
T Consensus 203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 203 VLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 56779999999999999999999999998875
No 42
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.18 E-value=0.022 Score=58.72 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=33.0
Q ss_pred ccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 103 ESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 103 ~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
+....-++.|+++|++|.++++||+||++||+|+.|+.
T Consensus 609 ~~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~ 646 (652)
T PRK05298 609 KELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKE 646 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44445677899999999999999999999999998874
No 43
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=93.81 E-value=0.039 Score=55.74 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|++++++|.++.+||+||++||.|+.|+
T Consensus 193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999988875
No 44
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=93.80 E-value=0.041 Score=57.29 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
=+++|+++|++|.++.+||+||++||+|+.|..
T Consensus 202 l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~ 234 (694)
T PRK14666 202 LVDALRTEMEAASEALEFERAAVLRDQIRAVER 234 (694)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999988763
No 45
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=93.46 E-value=0.054 Score=56.36 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|+++|++|.++.+||+||++||+|+.|+
T Consensus 206 ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 206 TVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999998876
No 46
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=93.40 E-value=0.054 Score=55.30 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
=+++|++++++|-++.+||+||++||+|+.|+.
T Consensus 200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 232 (567)
T PRK14667 200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALEN 232 (567)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 457799999999999999999999999988763
No 47
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=93.37 E-value=4.5 Score=34.43 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCC--------CCc--------cCHHHHHHHHHHH-----HhccCcc-
Q 024630 148 AANARFYDSFKNGDLATMQGLWARGDNVCCVHPGA--------SGI--------SGYDPVMESWEVV-----WMNYEFP- 205 (265)
Q Consensus 148 aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg--------~~l--------~Gr~aI~aswe~v-----fa~~~~p- 205 (265)
+........+.++|.+...++|++|.. +.+ |.. .+. .++.-.+..-..+ ++..+.+
T Consensus 3 ~~l~~ea~llD~~~~~~W~~lf~~d~~-Y~v-P~~~~~~~~~~d~~~~~~li~~d~~~~L~~RV~rl~~~~a~s~~P~sr 80 (155)
T TIGR03231 3 QFLYRKAELCDAQDWDAYLDLFDEDSE-FHL-PQWISEHNYTRDPKRELSLIYYEDRSGLEDRVFRIRTGKAASTTPMPR 80 (155)
T ss_pred hHHHHHHHHhcccCHHHHHHHhCcCce-EEe-eccCCccccccCCCCCceEEEcCChhHHHHHHHHHhCCCeeecCCCCe
Confidence 445566678999999999999999842 223 320 001 1222222222222 1112211
Q ss_pred eEEEEEeEEEEEeCC-EEEEE-EEEEEec--CCcceeeEEEEEEEEEeCCeEEEEEEee
Q 024630 206 LAIELKNVRVHVRGN-VGYVT-CIEFVRT--KGTSWGGQFVTNVFEKLDGQWFICIHHA 260 (265)
Q Consensus 206 l~iel~dv~V~v~GD-vA~Vt-~~e~v~~--~G~~~g~~raTnVfrR~dG~WrIVhhHa 260 (265)
...-+.+++|...++ ...+. ..-.+.. ++...-....+.++++.+|+|||...-.
T Consensus 81 trh~vsnv~v~~~~~~~i~v~s~f~~~~~r~~~~~~~~g~~~~~Lrr~~~g~kI~~R~i 139 (155)
T TIGR03231 81 TLHNIHNVRIAELEDGLLRVRVNWRTLFNRLGLEGCFYGHATYVLKPTGDSWLIRRKHS 139 (155)
T ss_pred eEEEEcCEEEEecCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEeCCEEEEEEEEE
Confidence 235566777754433 22222 2222222 3333222455568999999999987654
No 48
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=93.26 E-value=0.058 Score=55.63 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|+++|++|-++.+||+||++||+|+.|.
T Consensus 216 l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 216 LIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999988875
No 49
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=93.19 E-value=0.061 Score=55.00 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|++++++|-++.+||+||++||+|+.|.
T Consensus 178 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 178 LLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999988874
No 50
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=93.13 E-value=0.058 Score=55.18 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|++++++|.++.+||+||++||+|+.|+
T Consensus 200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 200 LADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999988875
No 51
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=93.11 E-value=0.066 Score=55.25 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|++++++|.++.+||+||++||+|+.|+
T Consensus 204 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 204 LARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999988874
No 52
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=93.06 E-value=0.061 Score=54.99 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+++|++++++|-++.+||+||++||+|+.|.
T Consensus 195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 195 VIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999988875
No 53
>PRK00183 hypothetical protein; Provisional
Probab=92.77 E-value=0.69 Score=39.96 Aligned_cols=98 Identities=13% Similarity=0.210 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEE-EEeCCEEE
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRV-HVRGNVGY 223 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V-~v~GDvA~ 223 (265)
...++..+.|-||..||++-|.+-|.++-. +. .-.+++.+ |.. +..- +.+++.+... -..++.+.
T Consensus 29 TaE~LMRSRYsAf~~~~~dYL~~T~hP~~r-----~~----~~~~~i~~-~~~---~~~W-l~LeI~~~~~~~~~~~~g~ 94 (157)
T PRK00183 29 CAEALMRSRYSAYVLGLVDYLVATTLPAQQ-----AG----LDRAAIAA-WSA---QSTW-LGLEVESSEVLGGQPEHAF 94 (157)
T ss_pred CHHHHHHHHHHHHHhcccchhhhccCcccc-----cc----cchHHHhh-ccc---CCEE-eceEEEEcccCCCCCceEE
Confidence 355677889999999999999999987621 11 11133322 221 1110 2223221111 11236777
Q ss_pred EEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEE
Q 024630 224 VTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICI 257 (265)
Q Consensus 224 Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVh 257 (265)
|.-......+| ....+...--|+|++|.|+.+-
T Consensus 95 VeF~A~y~~~g-~~~~lhE~S~F~r~~g~W~YvD 127 (157)
T PRK00183 95 VTFTARWHDAD-GEHSHRERSAFVQHQGRWYFID 127 (157)
T ss_pred EEEEEEEecCC-CccceeeeeeeeEeCCEEEecc
Confidence 76544444444 3345677778999999999764
No 54
>PRK04233 hypothetical protein; Provisional
Probab=92.71 E-value=0.84 Score=38.20 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEe-CCEEEE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVR-GNVGYV 224 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~-GDvA~V 224 (265)
..++-.+.|-||..||++-|.+-|.++-. |. ++...|. .+... +.+++.+. ... +|.++|
T Consensus 34 aE~LMRSRYsAfv~~~~dYL~~T~hp~~r-----~~--------~~~~~~~---~~~~W-l~LeI~~~--~~~~~~~g~V 94 (129)
T PRK04233 34 AETLMRARYSAYVRRDADYLLASWHPSTR-----PA--------ELSLDEG---GRTTW-LGLTVQRT--LETGADTAEV 94 (129)
T ss_pred HHHHHHHHHHHHHhCccchhhhccCcccC-----ch--------hhhcCcc---cCCEE-eeeEEEEc--cCCCCceEEE
Confidence 45577789999999999999999987621 11 2221121 11111 23333222 222 367877
Q ss_pred EEEEEEecCCcceeeEEEEEEEEEeCCeEEEE
Q 024630 225 TCIEFVRTKGTSWGGQFVTNVFEKLDGQWFIC 256 (265)
Q Consensus 225 t~~e~v~~~G~~~g~~raTnVfrR~dG~WrIV 256 (265)
.-.-.-..+|.........--|+|++|.|+.+
T Consensus 95 eF~A~y~~~~~~~~~~hE~S~F~r~~g~W~Yv 126 (129)
T PRK04233 95 VFLARYRIGGGSAVRMTEHSRFVREDGRWYYL 126 (129)
T ss_pred EEEEEEEcCCCceeEEEEeeeEEEECCEEEEe
Confidence 65544444443345567777899999999875
No 55
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=91.09 E-value=0.15 Score=52.36 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
=+.+|++++++|-++.|||+||++||.|..|.
T Consensus 203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~ 234 (581)
T COG0322 203 VLQELEEKMEEASENLDFERAARLRDQIKALE 234 (581)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 46779999999999999999999999988875
No 56
>PRK01752 hypothetical protein; Provisional
Probab=90.08 E-value=1.3 Score=38.26 Aligned_cols=96 Identities=10% Similarity=0.162 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVT 225 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt 225 (265)
..++..+.|.||..||++-|.+-|.++-. +. .-.+++.+ |.. +... +.+++.+.. ...++.++|.
T Consensus 33 aE~LMRSRYSAy~~~~~dYL~~T~hp~~r-----~~----~~~~~~~~-~~~---~~~W-~~LeI~~~~-~~~~~~g~Ve 97 (156)
T PRK01752 33 AEQLMRSRYAAYVLKNIDYIVETTVPSQQ-----TL----LDPAALQT-WAE---NTTW-LGLEILAHE-SLTKIHSAVE 97 (156)
T ss_pred HHHHHHHHHHHHHhcccchhhhcCCcccc-----cC----cCHHHHhc-ccc---CCeE-eeeEEEecc-CCCCceEEEE
Confidence 36788899999999999999999987621 11 11233332 321 1110 223332221 2233678776
Q ss_pred EEEEEecCCcceeeEEEEEEEEEeCCeEEEEE
Q 024630 226 CIEFVRTKGTSWGGQFVTNVFEKLDGQWFICI 257 (265)
Q Consensus 226 ~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVh 257 (265)
-.-....+|.. ..+...--|+|++|.|+.+.
T Consensus 98 F~A~y~~~g~~-~~~hE~S~F~r~~g~W~YvD 128 (156)
T PRK01752 98 FKAIFQGEEGE-QAHHERSLFVKIDNRWYFVD 128 (156)
T ss_pred EEEEEecCCCc-cccchhhhheeccCCEEEec
Confidence 55444444432 34566667999999999875
No 57
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=89.44 E-value=2.3 Score=34.58 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=33.1
Q ss_pred eEEEEEeEEEEEe-CCEEEEE--EEE--EEecCCcc------eeeEEEEEEEEEeCCeEEEE
Q 024630 206 LAIELKNVRVHVR-GNVGYVT--CIE--FVRTKGTS------WGGQFVTNVFEKLDGQWFIC 256 (265)
Q Consensus 206 l~iel~dv~V~v~-GDvA~Vt--~~e--~v~~~G~~------~g~~raTnVfrR~dG~WrIV 256 (265)
+..++..+.+... |+.|.|. ..| .+..+|.. ....++++.+.|.+|+|||.
T Consensus 55 ~~~~I~sv~~~~~~~~ra~v~a~v~E~~~l~~~g~~~~~~s~~~~~~vrY~L~r~~~~WkI~ 116 (117)
T PF13355_consen 55 HKLKIDSVEVFSDSPNRATVEATVTESAQLYDNGQPDNNPSYDSTLRVRYELVRQNGQWKIT 116 (117)
T ss_pred eeeEEEEEEEcCCCCCeEEEEEEEEEEEEEEeCCccccCCCCCCcEEEEEEEEEcCCEEEec
Confidence 4667777776554 7777764 222 22234432 23469999999999999985
No 58
>PRK02250 hypothetical protein; Provisional
Probab=88.86 E-value=2.5 Score=36.65 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEE
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYV 224 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~V 224 (265)
...++..+.|-||.-||++-+.+-|+++- .+.. -.+.+. .|. ...+ +.+++.+..--..++.++|
T Consensus 28 TpE~LMRSRYsAyv~g~~~Yl~~T~hP~~-----r~~~----~~e~i~-~~~--~~~w---~~LeI~~~~~g~~~~~g~V 92 (166)
T PRK02250 28 TPEQLMRSRYSAHVLGLVDYVVETYHPSC-----NAEE----QREGIA-ESI--HSDW---LKLEVIKTEAGSTPNEGFV 92 (166)
T ss_pred ChhhcchhHhHHHHhcccceeecccCccc-----CChh----hHHHHh-hhh--hcee---eccEEEEecCCCCCceEEE
Confidence 45567888899999999998888876651 1111 112222 221 1111 2333332221123467888
Q ss_pred EEEEEEecCCcceeeEEEEEEEEEeCCeEEEEE
Q 024630 225 TCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICI 257 (265)
Q Consensus 225 t~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVh 257 (265)
+-.-....+| ....+...--|+|++|.|+.+-
T Consensus 93 eF~A~y~~~g-~~~~~~E~S~F~r~~g~W~Yvd 124 (166)
T PRK02250 93 EFKAYFDEEG-KRYCLEERSRFLKENGLWYYID 124 (166)
T ss_pred EEEEEEecCC-CEEEEEEEEEEEeeCCEEEecC
Confidence 7665555545 3345667777999999999875
No 59
>PRK01842 hypothetical protein; Provisional
Probab=88.16 E-value=3.1 Score=35.68 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEE
Q 024630 146 VLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVT 225 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt 225 (265)
..++-.+.|-||..||++-|.+-|.++-. +... ..+++. .|.. .+ +.+++..... ..++.++|.
T Consensus 49 AE~LMRSRYSAy~l~~~dYL~~T~hP~~r-----~~~~---~~~~~~-~~~~---~W---lgLeI~~~~~-~~~~~G~Ve 112 (149)
T PRK01842 49 ALELMRSRYSAYVLGATDYLRATWDPSTC-----PADL---DADPAA-ADAP---RW---LGLAIKRHAQ-LDATHAEVE 112 (149)
T ss_pred HHHHHHHHHHHHHhcccchhhhccCcccC-----cccc---Chhhhh-ccCC---Ee---cceEEEEccC-CCCceEEEE
Confidence 44577789999999999999999987621 1111 112221 2211 11 2233322221 233678776
Q ss_pred EEEEEecCCcceeeEEEEEEEEEe-CCeEEEEE
Q 024630 226 CIEFVRTKGTSWGGQFVTNVFEKL-DGQWFICI 257 (265)
Q Consensus 226 ~~e~v~~~G~~~g~~raTnVfrR~-dG~WrIVh 257 (265)
-.-.-..+| ....+..+--|+|+ +|.|+.+-
T Consensus 113 F~A~y~~~g-~~~~lhErS~F~r~~~G~W~YvD 144 (149)
T PRK01842 113 FVARYKVGG-RAHRLHETSRFVRDEQGRWRYVD 144 (149)
T ss_pred EEEEEecCC-CeEEEEEeeeeEECCCCeEEEeC
Confidence 544444434 44566777789997 89998763
No 60
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.33 E-value=3 Score=35.80 Aligned_cols=97 Identities=14% Similarity=0.239 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEE
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYV 224 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~V 224 (265)
...++....|.|+.-+|++-+-+-|.++- ...--++++++ .|.+... +.+++..-...-..+.|+|
T Consensus 29 t~e~LMRSRy~Ayvlkn~dYli~TwhPs~---------qa~~~~~~l~~----~~~~t~w-lGL~I~~h~~~~~~~~~~V 94 (151)
T COG3012 29 TPEALMRSRYCAYVLKNADYLIKTWHPSC---------QAALDRAELIA----GFAHTEW-LGLTIIEHTGLGAPNHGFV 94 (151)
T ss_pred CHHHHHHHHHHHHHhcCchheeeccCCcc---------ccccchhHhhc----ccccceE-eeEEEEEeccCCCCcceeE
Confidence 34567778999999999999999997751 11112344443 2222221 3444443222222568888
Q ss_pred EEEEEEecCCcceeeEEEEEEEEEeCCeEEEE
Q 024630 225 TCIEFVRTKGTSWGGQFVTNVFEKLDGQWFIC 256 (265)
Q Consensus 225 t~~e~v~~~G~~~g~~raTnVfrR~dG~WrIV 256 (265)
.-..+....| ..+.......|+|++|.|..+
T Consensus 95 eF~A~f~~~~-~~~a~~ErSrFvk~ngrWyyi 125 (151)
T COG3012 95 EFVARFKGGG-KTGAHHERSRFVKINGRWYYI 125 (151)
T ss_pred EEEEEEccCC-ccchhhhhhhheEECCEEEEE
Confidence 7766665433 445566777799999999876
No 61
>PF02982 Scytalone_dh: Scytalone dehydratase; InterPro: IPR004235 Scytalone dehydratase is a member of the group of enzymes involved in fungal melanin biosynthesis. It was first identified in a phytopathogenic fungus, Magnaporthe grisea (Rice blast fungus), which causes rice blast disease. Scytalone dehydratase is a molecular target of inhibitor design efforts aimed at protecting rice plants from fungal disease [, ].; GO: 0030411 scytalone dehydratase activity, 0006582 melanin metabolic process; PDB: 4STD_A 3STD_A 6STD_A 7STD_C 1STD_A 5STD_C 1IDP_B 2STD_A.
Probab=85.32 E-value=7.2 Score=33.90 Aligned_cols=112 Identities=16% Similarity=0.036 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC-CCCC--ccCHHHHHHHHH--HHHhccCcceE--EEEEeEEE-E
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP-GASG--ISGYDPVMESWE--VVWMNYEFPLA--IELKNVRV-H 216 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP-gg~~--l~Gr~aI~aswe--~vfa~~~~pl~--iel~dv~V-~ 216 (265)
++.++.-.|.+++.++|.++|.++.|+.-.| .+.. .+.. ---.++..+.|- .++++.. +. .=+..-.. .
T Consensus 9 ~~~~~~feWAdsYD~KDW~RL~~~lAPtl~v-DY~~v~~~~we~m~a~eFvam~s~~~~LGd~~--lkTQHllGa~~we~ 85 (160)
T PF02982_consen 9 GCQAAAFEWADSYDTKDWDRLRKILAPTLRV-DYRSVLGKLWEAMPADEFVAMASSPHFLGDPL--LKTQHLLGASKWEK 85 (160)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHTTEEEEEEE-EEHHHHSEEEEEEEHHHHHHHHTSTTTTT-TT--EEE--EEEEEEEEE
T ss_pred HHHHHHHHHHhhhccccHHHHHHhhCCeEEE-EHHHhhhhHHhhCCHHHHHHHHcCccccCCcc--hhheeecccceEEE
Confidence 5677777899999999999999999996221 1111 1111 011233333332 2222221 21 11111111 3
Q ss_pred EeCCEEEEEEEEEEe----cCCcc-------eeeEEEEEEEEEeCCeEEEEEEe
Q 024630 217 VRGNVGYVTCIEFVR----TKGTS-------WGGQFVTNVFEKLDGQWFICIHH 259 (265)
Q Consensus 217 v~GDvA~Vt~~e~v~----~~G~~-------~g~~raTnVfrR~dG~WrIVhhH 259 (265)
++++..++.-.-++. .+++. .+....|.-|+|.||.||+.-.-
T Consensus 86 vsd~eiig~hQlRaaHqry~D~~~~~V~~kGh~h~~~~h~Y~KvdG~WK~agl~ 139 (160)
T PF02982_consen 86 VSDTEIIGHHQLRAAHQRYTDDSLTEVKAKGHGHGTNTHWYRKVDGVWKFAGLK 139 (160)
T ss_dssp EETTEEEEEEEEEEEEEEESSTT--SEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ecCCEEEEEEEEEeeeeeeeCCCccEEEeeeccceeEEEEEEEeCCEEEEeeec
Confidence 555554443221211 22221 23467888999999999997543
No 62
>COG4994 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.78 E-value=1.1 Score=36.78 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=19.9
Q ss_pred EEEEEEEEEeCCeEEEEEEeeCCC
Q 024630 240 QFVTNVFEKLDGQWFICIHHASPV 263 (265)
Q Consensus 240 ~raTnVfrR~dG~WrIVhhHaSp~ 263 (265)
.+-.++|++.+|+|||+-|+...+
T Consensus 95 t~Rs~IW~~~~g~WK~vfHQGT~I 118 (120)
T COG4994 95 TRRSTIWRRTAGGWKIVFHQGTVI 118 (120)
T ss_pred eeeeeeeeeeCCcEEEEEecceEE
Confidence 355669999999999999997643
No 63
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.56 E-value=4 Score=42.94 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=56.9
Q ss_pred cHHHHH---HHHHHHHhccCHHHHHhhhchhhcccc-------------------------cchhhHHH-HHHHHHHHHH
Q 024630 108 DEEILK---RELQIAIEEEDYVQAAKLRDSLKMLDE-------------------------DSKTSVLA-ANARFYDSFK 158 (265)
Q Consensus 108 ~~~~l~---~~L~~ai~~Edye~AA~~RD~i~~l~~-------------------------Dsk~aI~a-a~~afy~Af~ 158 (265)
++.+|+ +.++.|++.||||+||..--++..|.. +.+..+.. +-.+|.+|..
T Consensus 126 dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r 205 (773)
T KOG0412|consen 126 DVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKERLSKLFKERFTEAVR 205 (773)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 677899999999999988766555521 11111111 2467889999
Q ss_pred cCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHH
Q 024630 159 NGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVV 198 (265)
Q Consensus 159 aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~v 198 (265)
++|+..+..++- .+++-|....|.+.+-.++-.+
T Consensus 206 ~~D~~ei~RffK------mFPliG~~~eGL~~ys~ylc~i 239 (773)
T KOG0412|consen 206 KQDLKEITRFFK------MFPLIGEEDEGLQLYSVYLCQI 239 (773)
T ss_pred cccHHHHHHHHH------HccccCCchhhHHHHHHHHHHH
Confidence 999999999864 2455677777877665555433
No 64
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=75.06 E-value=48 Score=29.18 Aligned_cols=90 Identities=14% Similarity=0.265 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEE
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGY 223 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~ 223 (265)
..|......|..|+..|+.+.|..+..++..+ | +.| +. -...++.++.+.-.++-..
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~----~----l~~-------------~~--~~~~~v~~~~~~~~~~~~~ 196 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAII----G----LNG-------------AP--YKFVKVDDIKVYKTKDKGR 196 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT--------------------------------SEEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCccc----c----cCC-------------Cc--eEEEeeeeEEeecCCCCcE
Confidence 57888999999999999999988887765211 1 111 00 0245666777766554222
Q ss_pred EEEE-EEEecCC-cceeeEEEEEEEEEeCCeEEEE
Q 024630 224 VTCI-EFVRTKG-TSWGGQFVTNVFEKLDGQWFIC 256 (265)
Q Consensus 224 Vt~~-e~v~~~G-~~~g~~raTnVfrR~dG~WrIV 256 (265)
+... =.+...| ...-...++..+.+.+|+|.|.
T Consensus 197 ~~v~tVt~~~~~t~~~~~~~y~LtL~~~~~~w~V~ 231 (232)
T PF12642_consen 197 VVVQTVTFKDPGTKATLTQQYTLTLTKRGGRWYVT 231 (232)
T ss_dssp EEE--EEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEEECCCCcEEEEEEEEEEEEcCCEEEEe
Confidence 2221 1112222 1234467777788999999984
No 65
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=72.27 E-value=48 Score=26.41 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHH---HHHHhccCcceEEEEEeEEEEEeCCEEE
Q 024630 147 LAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESW---EVVWMNYEFPLAIELKNVRVHVRGNVGY 223 (265)
Q Consensus 147 ~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~asw---e~vfa~~~~pl~iel~dv~V~v~GDvA~ 223 (265)
..+.+.+-+.| .|+++ .++|++| +.+..|-. .+.|.+..+..+ +....-......+++.++. ..++- .
T Consensus 5 ~~Lr~D~~~~f-~~~~~--~~iY~~d--v~F~Dp~~-~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~--~~~~~-~ 75 (113)
T PF10184_consen 5 RTLREDLPRFF-TGDLD--YSIYDED--VVFIDPIV-SFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIE--QDGED-T 75 (113)
T ss_pred HHHHHHHHHHh-cCCCC--hhhcCCC--eEEECCCC-ceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEE--ECCCC-E
Confidence 33444444555 77766 5699887 88888874 678888887773 2222211123567777554 44443 5
Q ss_pred EEEEEEEec--CC--cceeeEEEEEEEEEeCCeEEEEEE
Q 024630 224 VTCIEFVRT--KG--TSWGGQFVTNVFEKLDGQWFICIH 258 (265)
Q Consensus 224 Vt~~e~v~~--~G--~~~g~~raTnVfrR~dG~WrIVhh 258 (265)
+...|.+.. .- .+......+-+|.-.+.+ +|+.|
T Consensus 76 I~~rW~~~g~~~l~w~p~~~~~G~S~~~ln~~g-~I~~H 113 (113)
T PF10184_consen 76 IRARWRLRGVPRLPWRPRISFDGTSTYTLNSDG-LIYRH 113 (113)
T ss_pred EEEEEEEEEEeCCCcCCcEEEEEEEEEEECCCC-cEEeC
Confidence 556666653 11 112235667778876655 76654
No 66
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=69.93 E-value=17 Score=26.88 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhh
Q 024630 106 MLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLW 169 (265)
Q Consensus 106 ~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alw 169 (265)
.++.-+++++|+.+...++.++-..++ .+-...+......+..+|..+|++......
T Consensus 7 Lme~mE~rE~le~~~~~~~~~~L~~l~-------~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~ 63 (78)
T PF07743_consen 7 LMEQMELREELEEAQNSDDEAELEELK-------KEIEERIKELIKELAEAFDAKDWEEAKEAL 63 (78)
T ss_dssp HHHHHHHHHHHHHHCCCTSHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 457778888888887765555444444 444566777888888888999998877654
No 67
>PRK11020 hypothetical protein; Provisional
Probab=67.97 E-value=4.5 Score=33.37 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=53.6
Q ss_pred ccccHHHHHHHHHHHHhccCHHHHHhhhchhhccccc------------chhhHHHHHHHHHHHHHcCCHHHHHhhhcCC
Q 024630 105 IMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDED------------SKTSVLAANARFYDSFKNGDLATMQGLWARG 172 (265)
Q Consensus 105 ~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~D------------sk~aI~aa~~afy~Af~aGDldAL~alwAdD 172 (265)
+...++.++++|..|..++|-|.-++..+||..|... ++.+-.-..-.|.+++-...-+.|-.|=-.-
T Consensus 10 L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQADMGkLKKSV 89 (118)
T PRK11020 10 LSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQADMGKLKKSV 89 (118)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHHHhHHHHhhcc
Confidence 3446788999999999999999999999998877532 1222222334466777776666676664433
Q ss_pred CceEEecCC
Q 024630 173 DNVCCVHPG 181 (265)
Q Consensus 173 d~V~~vhPg 181 (265)
-.+++|||.
T Consensus 90 rGLVVVHPM 98 (118)
T PRK11020 90 RGLVVVHPM 98 (118)
T ss_pred cceeEecCc
Confidence 457888994
No 68
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=67.74 E-value=65 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCC
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARG 172 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdD 172 (265)
..+..+.....+||.+||.+.|..+.+++
T Consensus 22 ~~ak~~f~~i~~A~~~~D~~~l~~~~t~~ 50 (147)
T PF04280_consen 22 EEAKEAFLPIQEAWAKGDLEALRPLLTEE 50 (147)
T ss_dssp HHHHHTHHHHHHHHHHT-HHHHHHHB-HH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhCHH
Confidence 34455555566899999999999997764
No 69
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=67.72 E-value=76 Score=26.93 Aligned_cols=106 Identities=7% Similarity=-0.087 Sum_probs=53.8
Q ss_pred HHHHcCCHHHHHhhhcCCCceEEecC-----------CCC-Cc---cCHHHHHHHHHHH-----HhccC-cceEEEEEeE
Q 024630 155 DSFKNGDLATMQGLWARGDNVCCVHP-----------GAS-GI---SGYDPVMESWEVV-----WMNYE-FPLAIELKNV 213 (265)
Q Consensus 155 ~Af~aGDldAL~alwAdDd~V~~vhP-----------gg~-~l---~Gr~aI~aswe~v-----fa~~~-~pl~iel~dv 213 (265)
+.+..++.+...++|++|.... ++. +.+ .+ .++......-..+ ++..+ .....-+.++
T Consensus 10 ~LLD~~~~~eWl~L~~eD~~Y~-vP~~~~~~~~~~~~~~~~~~~~~d~~~~L~~RV~rL~t~~a~se~P~srtrh~vsnv 88 (155)
T TIGR03232 10 RLLDDEQWDDWLECYRADASFW-MPAWDDDDQLTEDPQSEISLIYYPNRQGLEDRVFRIKTERSSATVPDTRTSHNISNV 88 (155)
T ss_pred HHhhhhhHHHHHHhcccCeEEE-EEeeeCccccccCCCCceeEEEcCChhHHHHHHHHHhcCCceecCCCCeeeEEEcCE
Confidence 4578899999999999985322 221 110 01 2333333222222 22222 1123455677
Q ss_pred EEEEeC-CEEEEEEEE-EEec--CCcceeeEEEEEEEEEeCCeEEEEEEeeC
Q 024630 214 RVHVRG-NVGYVTCIE-FVRT--KGTSWGGQFVTNVFEKLDGQWFICIHHAS 261 (265)
Q Consensus 214 ~V~v~G-DvA~Vt~~e-~v~~--~G~~~g~~raTnVfrR~dG~WrIVhhHaS 261 (265)
+|...+ |...|.... .+.. ++...-....+.++++.+|+|||......
T Consensus 89 ~v~~~~~~~i~v~s~f~v~~~R~~~~~~~~g~~~~~Lr~~~~~~ki~~r~v~ 140 (155)
T TIGR03232 89 EIEEQDGDVITVRFNWHTLSFRYKTTDSYFGMSRYTIDFSGESPKIKSKYVV 140 (155)
T ss_pred EEEecCCCEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEEcCCeeEEEEEEEE
Confidence 765333 333333222 2233 22222234556678989999999876543
No 70
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=61.43 E-value=8.8 Score=27.65 Aligned_cols=32 Identities=28% Similarity=0.589 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHhccCHHHHHhhhchhhcccc
Q 024630 106 MLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDE 140 (265)
Q Consensus 106 ~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~ 140 (265)
-.+++.|++.|+.+ .|||+--.||-.|+.|..
T Consensus 21 I~De~~L~kmLe~~---~dyeeRr~IRaaiR~lr~ 52 (54)
T PF12510_consen 21 IEDEEVLEKMLEAT---TDYEERRRIRAAIRELRK 52 (54)
T ss_pred hhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHh
Confidence 34666777777765 799999999999998764
No 71
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=60.54 E-value=11 Score=28.07 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhccCHHHHHhh
Q 024630 110 EILKRELQIAIEEEDYVQAAKL 131 (265)
Q Consensus 110 ~~l~~~L~~ai~~Edye~AA~~ 131 (265)
+...++.++.+.+++|++||++
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~ 28 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKV 28 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 4567899999999999999988
No 72
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=57.74 E-value=26 Score=29.94 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=43.2
Q ss_pred cccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhh
Q 024630 102 GESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGL 168 (265)
Q Consensus 102 ~~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~al 168 (265)
.....+++.++++.|+++-...|.+ +|..|...-+..+.+....+-.||..+|++.....
T Consensus 76 d~~fLme~Me~rE~lee~~~~~d~~-------~L~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~ 135 (157)
T TIGR00714 76 DTAFLMEQLELREELDEIEQAKDEA-------RLESFIKRVKKMFQTRHQLLVEQLDNQTWAAAADY 135 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3445678888888888776655543 34555556677788888888899999998876655
No 73
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=56.10 E-value=1.2e+02 Score=25.21 Aligned_cols=105 Identities=14% Similarity=0.055 Sum_probs=59.5
Q ss_pred HHHHcCCHHHHHhhhcCCCceEEecCCCCC--------------c-cCHHHHHHHHHHHH-----hccC-cceEEEEEeE
Q 024630 155 DSFKNGDLATMQGLWARGDNVCCVHPGASG--------------I-SGYDPVMESWEVVW-----MNYE-FPLAIELKNV 213 (265)
Q Consensus 155 ~Af~aGDldAL~alwAdDd~V~~vhPgg~~--------------l-~Gr~aI~aswe~vf-----a~~~-~pl~iel~dv 213 (265)
+.+..++.+...++|++|.... |++.... + .++......-..+. +..+ .....-+.++
T Consensus 4 ~lLD~~~~~eWl~l~~~D~~Y~-vp~~~~~~~~~~~~~~~~~~~~~d~~~~L~~RV~rl~~~~~~se~P~srtrh~vsnv 82 (145)
T PF00866_consen 4 RLLDERRYDEWLALFTEDCHYW-VPARENRDRRDRDPGSEEMLIFDDDRGMLEDRVERLRTGRAWSEDPPSRTRHFVSNV 82 (145)
T ss_dssp HHHHTT-HHHHHHTEEEEEEEE-EEEBGGC-TTGGGGSBTSEEEEEESHHHHHHHHHHHHSTTHGGGSS--EEEEEEEEE
T ss_pred HHhhhhHHHHHHHHhccCeEEE-EEeccCccccccCCCCceEEEEeCCHhHHHHHHHHHhcCCccccCCCceeEEEEcCE
Confidence 4578999999999999984332 2221110 0 24454444333332 2112 2234456777
Q ss_pred EEEEe--CCEEEEEEEEEEe-c--CCcc-eeeEEEEEEEEEeCCeEEEEEEee
Q 024630 214 RVHVR--GNVGYVTCIEFVR-T--KGTS-WGGQFVTNVFEKLDGQWFICIHHA 260 (265)
Q Consensus 214 ~V~v~--GDvA~Vt~~e~v~-~--~G~~-~g~~raTnVfrR~dG~WrIVhhHa 260 (265)
+|... ++...|.+...+. . ++.. .-......++++.+|+|||.....
T Consensus 83 ~v~~~~~~~~~~v~s~f~v~r~r~~~~~~~~~G~~~d~lr~~~~~~ki~~R~v 135 (145)
T PF00866_consen 83 RVEETEDGGEIEVRSNFLVYRSRLDGDQDLFAGRREDVLRRTDGGLKIARRRV 135 (145)
T ss_dssp EEEEESSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEESSSEEEEEEEE
T ss_pred EEEEecCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEEeCCEEEEEEEEE
Confidence 88764 5666665444432 2 2222 223588889999999999988654
No 74
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=55.13 E-value=33 Score=29.88 Aligned_cols=59 Identities=7% Similarity=0.110 Sum_probs=41.0
Q ss_pred ccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhh
Q 024630 103 ESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGL 168 (265)
Q Consensus 103 ~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~al 168 (265)
-...+++.+++++|+.+-...|.++= ..|..+-+..+.+....+.++|..+|++.-...
T Consensus 91 ~~fLme~ME~rE~lee~~~~~d~~~L-------~~l~~~v~~~~~~~~~~l~~~~~~~d~~~A~~~ 149 (173)
T PRK01773 91 MAFLMQQMEWREQLEEIEQQQDEDAL-------TAFSKEIKQEQQAILTELSTALNSQQWQQASQI 149 (173)
T ss_pred HHHHHHHHHHHHHHHhhcccCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35556778888999887666664443 334444556777788888889999998766554
No 75
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=54.42 E-value=25 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=43.2
Q ss_pred cccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhh
Q 024630 102 GESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGL 168 (265)
Q Consensus 102 ~~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~al 168 (265)
.....+++.+++++|+.+-...|.+++ +..|...-+..+.+..+.+..+|..+|.+....+
T Consensus 88 d~efLme~me~rE~le~~~~~~d~~~~------l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~ 148 (171)
T PRK05014 88 DTAFLMEQMELREELEDIEQSKDPEAA------LESFIKRVKKMFKTRLQQMVEQLDNEAWDAAADT 148 (171)
T ss_pred CHHHHHHHHHHHHHHHhhccccCHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 345556888888888887666664432 3455556667788888888899999998766554
No 76
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=53.80 E-value=32 Score=27.80 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=16.7
Q ss_pred eeEEEEEEEEEeCCeEEEEEE
Q 024630 238 GGQFVTNVFEKLDGQWFICIH 258 (265)
Q Consensus 238 g~~raTnVfrR~dG~WrIVhh 258 (265)
.....+..++|++|.|||...
T Consensus 96 ~~~~~~~~l~ke~g~WkI~~V 116 (120)
T PF12883_consen 96 KKQTVIVCLVKENGRWKIDDV 116 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEEEECCEEEEEEe
Confidence 355677779999999999754
No 77
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=52.77 E-value=50 Score=26.83 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=32.4
Q ss_pred cccccCCCccccccccHHH-HHHHHHHHHhccCHHHHHhhhc
Q 024630 93 SDDTEGNLSGESIMLDEEI-LKRELQIAIEEEDYVQAAKLRD 133 (265)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-l~~~L~~ai~~Edye~AA~~RD 133 (265)
.+--+|..|......+.++ +.+.+++.+++++|++|..+-+
T Consensus 53 pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 53 PGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred CCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556787887777767666 6688999999999999998843
No 78
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=51.96 E-value=54 Score=26.20 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHhhhchhhcc------------cccchhhHHHHHHHHHHHHHcCC-HHHHHhh
Q 024630 107 LDEEILKRELQIAIEEEDYVQAAKLRDSLKML------------DEDSKTSVLAANARFYDSFKNGD-LATMQGL 168 (265)
Q Consensus 107 ~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l------------~~Dsk~aI~aa~~afy~Af~aGD-ldAL~al 168 (265)
.++.+.=+.++++|++||+++|.+.-+++... ..+.-..|.....+...++..+| .++++.+
T Consensus 26 ~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el 100 (121)
T PF14276_consen 26 DSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAEL 100 (121)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566667889999999999999987775543 22333345555666667788888 4455444
No 79
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=51.76 E-value=6.2 Score=33.82 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=30.4
Q ss_pred ccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccc
Q 024630 103 ESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDS 142 (265)
Q Consensus 103 ~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Ds 142 (265)
...+.++.+|++++..-=.+++|.+.|++|-+++++.++-
T Consensus 43 ~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el 82 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEEL 82 (161)
T ss_dssp HHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577777777776656799999999999998888654
No 80
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=50.16 E-value=1.4e+02 Score=29.36 Aligned_cols=22 Identities=14% Similarity=0.456 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHhhhcCC
Q 024630 151 ARFYDSFKNGDLATMQGLWARG 172 (265)
Q Consensus 151 ~afy~Af~aGDldAL~alwAdD 172 (265)
.....||..||.+.|..+.+++
T Consensus 256 p~ILeAf~kGD~e~LK~~lse~ 277 (378)
T TIGR00984 256 PEILEAYVKGDLEVLKSWCSEA 277 (378)
T ss_pred HHHHHHHHcCCHHHHHHhhCHH
Confidence 4456899999999999987765
No 81
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=48.54 E-value=25 Score=27.97 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.8
Q ss_pred eeEEEEEEEEEeCCeEEEEEE
Q 024630 238 GGQFVTNVFEKLDGQWFICIH 258 (265)
Q Consensus 238 g~~raTnVfrR~dG~WrIVhh 258 (265)
|.+.--.||.|.+|+|.|+|.
T Consensus 49 g~M~Pi~v~~~~~g~w~iiHr 69 (92)
T PF12647_consen 49 GRMEPIAVWVRRDGEWMIIHR 69 (92)
T ss_pred CeeeEEEEEEEcCCCEEEEEe
Confidence 456667789999999999996
No 82
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=48.07 E-value=30 Score=29.84 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=27.3
Q ss_pred hhcccccchhhHHHHHHHHHHHHHcCCHHHHHhh
Q 024630 135 LKMLDEDSKTSVLAANARFYDSFKNGDLATMQGL 168 (265)
Q Consensus 135 i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~al 168 (265)
|..|..+-+..+.+....+-++|..+|.+.....
T Consensus 111 L~~l~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~ 144 (166)
T PRK01356 111 LEKIKNKYELMYKNEIDSLKQAFEEQNLSDATIK 144 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5667777778888899999999999998766554
No 83
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=47.51 E-value=58 Score=28.40 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=39.0
Q ss_pred ccccccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHc-CCHHHHHh
Q 024630 103 ESIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKN-GDLATMQG 167 (265)
Q Consensus 103 ~~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~a-GDldAL~a 167 (265)
-...+++.+++++|+.+-...|.++- ..|..+-+..+.+....+.++|.. +|+++...
T Consensus 94 ~~fLme~mE~rE~lee~~~~~d~~~L-------~~l~~e~~~~~~~~~~~l~~~~~~~~d~~~A~~ 152 (176)
T PRK03578 94 PAFLMQQMEWREAIEDARAARDVDAL-------DALLAELRDERRERYAELGALLDSRGDDQAAAE 152 (176)
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 44556788899999987665665443 334444466777777788888877 77665544
No 84
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=46.37 E-value=1.8e+02 Score=24.47 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=24.3
Q ss_pred eEEEEEeEEEEE--eCCEEEEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEE
Q 024630 206 LAIELKNVRVHV--RGNVGYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIH 258 (265)
Q Consensus 206 l~iel~dv~V~v--~GDvA~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhh 258 (265)
-.+++......- +++.+.|... ....+| ..+.+...+++.+|+|+|+=.
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~-i~~~~g---~~i~v~y~l~~~~g~Wki~Dv 135 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTE-IISKDG---QPIPVDYRLRKKDGKWKIYDV 135 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEE-EEET-T---EEEEEEEEEEEETTEEEEEEE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEE-EEcCCC---CcEEEEEEEEEcCCCeEEEEE
Confidence 356665433222 1356666433 344445 345566667779999999754
No 85
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=45.91 E-value=58 Score=24.28 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHhhhchh-----------------hcc-------------cccchhhHHHHHHHHHHH
Q 024630 107 LDEEILKRELQIAIEEEDYVQAAKLRDSL-----------------KML-------------DEDSKTSVLAANARFYDS 156 (265)
Q Consensus 107 ~~~~~l~~~L~~ai~~Edye~AA~~RD~i-----------------~~l-------------~~Dsk~aI~aa~~afy~A 156 (265)
.+++++-++++++...+|+++...+-.+. +.+ .........+-....++|
T Consensus 27 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~fh~~l~~~~~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~a 106 (125)
T PF07729_consen 27 AELEELLEQMEEAIEDEDIEEFIEADIEFHRALAEASGNPYLIQILERLRDRLQRFRYLSIRSKEDLERSLEEHREIIDA 106 (125)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 35666667888888888888877664331 111 122344556667788899
Q ss_pred HHcCCHHHHHhhhc
Q 024630 157 FKNGDLATMQGLWA 170 (265)
Q Consensus 157 f~aGDldAL~alwA 170 (265)
+.+||.++...++.
T Consensus 107 i~~~d~~~a~~~~~ 120 (125)
T PF07729_consen 107 IRAGDPEAAREALR 120 (125)
T ss_dssp HHTT-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 99999998887754
No 86
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.54 E-value=2.3e+02 Score=24.86 Aligned_cols=116 Identities=8% Similarity=-0.023 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecC--CCCCccCHH-------------HHHH---HHHHHH--hc-c
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHP--GASGISGYD-------------PVME---SWEVVW--MN-Y 202 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhP--gg~~l~Gr~-------------aI~a---swe~vf--a~-~ 202 (265)
.+|.+-.-+..+++.++|+++.-++|.++.... +.| ......+.. ...+ .-+.-. +. +
T Consensus 8 ~ri~dFL~reA~llDd~dwd~Wla~f~e~~~y~-m~~w~~eq~~~~~Pq~e~s~I~~~~k~~LedRV~ri~tg~a~a~~P 86 (164)
T COG5517 8 HRISDFLYREAELLDDRDWDAWLAQFDEQAEYW-MPPWDDEQTLTRDPQRETSLIYYDSKGGLEDRVFRIRTGMAWATLP 86 (164)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHhhheEe-CCcccccchhccCCCCceEEEEeCCcchHHHHHHHHhcccccccCC
Confidence 344555555557899999999999999875333 444 111222222 1111 111111 11 1
Q ss_pred CcceEEEEEeEEEE-EeCCEEEEEEEEEEe-cCCcceeeE--EEEEEEEEeCCeEEEEEEee
Q 024630 203 EFPLAIELKNVRVH-VRGNVGYVTCIEFVR-TKGTSWGGQ--FVTNVFEKLDGQWFICIHHA 260 (265)
Q Consensus 203 ~~pl~iel~dv~V~-v~GDvA~Vt~~e~v~-~~G~~~g~~--raTnVfrR~dG~WrIVhhHa 260 (265)
+......+.++++. +.|++.-+.+.+.+. ..-...... .++.+....+++|||+..+-
T Consensus 87 ~~RTrH~isNvqi~~~~~~~~~vR~N~~~~~~r~~~~~tffg~t~y~l~~~~e~~~i~~r~i 148 (164)
T COG5517 87 PSRTRHLISNVQILEVDDGLVRVRVNYLTFRYRYDETDTFFGTTRYDLDVRGEGWRIASRKI 148 (164)
T ss_pred CcccceeeccceEEeecCCEEEEEEeEEEEEEeccccceEeeeEEEEeeccCCcceeeeeEE
Confidence 11123455566664 555555555555443 222222222 34445556678999998763
No 87
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=42.40 E-value=6.6 Score=36.58 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.3
Q ss_pred CCCccccceeeeecceeccccCc
Q 024630 4 QGPSFGYNVNVMNVKAVKCMPSS 26 (265)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (265)
-|+||+||-+|+|.+.|..|.-.
T Consensus 167 RG~sFGYnnLV~DMrsl~iM~~~ 189 (279)
T COG2877 167 RGASFGYNNLVVDMRSLPIMKEF 189 (279)
T ss_pred ccCccCcchhHHHhhhhHHHHHc
Confidence 38999999999999999988654
No 88
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=41.52 E-value=16 Score=30.95 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCccccceeeeecceeccccCcccccccc----eeecCCCCC
Q 024630 5 GPSFGYNVNVMNVKAVKCMPSSCINNLRK----HCSLSPLNP 42 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 42 (265)
..+||+||-|+-+.+++..-|.|.+.+-- |+-|+...|
T Consensus 49 y~~YClHG~C~yI~dl~~~~CrC~~GYtGeRCEh~dLl~~~~ 90 (139)
T PHA03099 49 GDGYCLHGDCIHARDIDGMYCRCSHGYTGIRCQHVVLVDYQR 90 (139)
T ss_pred hCCEeECCEEEeeccCCCceeECCCCcccccccceeeeeeec
Confidence 46899999999999999999999998864 777765444
No 89
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=40.57 E-value=62 Score=22.08 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhhcC
Q 024630 119 AIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWAR 171 (265)
Q Consensus 119 ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alwAd 171 (265)
++++++|++|..+-.++-....+........-..+ +..|+.+.-..++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCY---LKQGQYDEAEELLER 50 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH---HHTT-HHHHHHHHHC
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHH
Confidence 46788899998887776655555444333333333 677888887777765
No 90
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.04 E-value=69 Score=30.66 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhhcCC
Q 024630 113 KRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWARG 172 (265)
Q Consensus 113 ~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alwAdD 172 (265)
=.+..++++.|||.+|+.+-+....+..+.-.++...-+.| +.+||.++..++++.-
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~---l~~g~~e~A~~iL~~l 194 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECL---LAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHH---HHcCChHHHHHHHHhC
Confidence 34556777889999999977766666555555555555556 6778888888777653
No 91
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=36.99 E-value=2.5e+02 Score=23.89 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEE---EEEeCC-EEEEE
Q 024630 150 NARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVR---VHVRGN-VGYVT 225 (265)
Q Consensus 150 ~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~---V~v~GD-vA~Vt 225 (265)
...||+.+ +..-..+..||-+.. ..+ ..|.++.|++.+-..|+..-.. ..+|+..|-+ =.+.|+ +++..
T Consensus 20 v~~YY~sm-D~rR~~i~rlY~~~a--tlv-WNGn~v~g~esls~ff~~LPsS---~~qi~~lD~Qpv~dqat~~q~~vLv 92 (139)
T KOG4353|consen 20 VNVYYSSM-DKRRRGIGRLYLDNA--TLV-WNGNPVSGTESLSEFFNMLPSS---EFQINDLDCQPVHDQATGSQTTVLV 92 (139)
T ss_pred HHHHHHHH-HHHHHHhHHHhhccc--eEE-EcCCcchhHHHHHHHHHhCCCc---cccccccccccchhhcccccceEEE
Confidence 44455554 455788999999863 333 5678899999998877654321 1234333322 123333 34332
Q ss_pred -EEEEEecCCcceeeEEEEEEEEEeCCeEEE
Q 024630 226 -CIEFVRTKGTSWGGQFVTNVFEKLDGQWFI 255 (265)
Q Consensus 226 -~~e~v~~~G~~~g~~raTnVfrR~dG~WrI 255 (265)
.--.+..+|.+.-....|-..--+++.|+-
T Consensus 93 vvsGtVkFdG~k~r~F~qt~ll~~e~~~~k~ 123 (139)
T KOG4353|consen 93 VVSGTVKFDGNKQRVFNQTFLLTAEDPPFKT 123 (139)
T ss_pred EEeeeEEEcCCccccccceeEEeecCCccch
Confidence 223445567654444556556667888873
No 92
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.94 E-value=50 Score=31.59 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=33.8
Q ss_pred HHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcC
Q 024630 112 LKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNG 160 (265)
Q Consensus 112 l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aG 160 (265)
..+..++||+..|+++|..|=||=.+|-.. .+.+-|.++++.+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~------~Ar~tFik~V~~k 302 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST------SARSTFISSVKGK 302 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------hHHHHHHHHhhcC
Confidence 779999999999999999998887766543 3566677776643
No 93
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=36.26 E-value=1.1e+02 Score=28.90 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHH
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVME 193 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~a 193 (265)
...++-++|.+|+.++|.++|..+..++-. .++.|++ .+++++..
T Consensus 6 tPe~Aa~Al~~Av~~~d~~aL~~vLG~~~~-~~vp~~~---~d~~~~~~ 50 (271)
T PF11453_consen 6 TPEAAADALVDAVATNDEDALAKVLGPDWR-DLVPSGG---ADREDRYR 50 (271)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhCccHH-hccCCCC---ccHHHHHH
Confidence 346788899999999999999999998843 3344444 34444443
No 94
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.78 E-value=1.8e+02 Score=26.34 Aligned_cols=114 Identities=20% Similarity=0.304 Sum_probs=56.8
Q ss_pred ccccHHHHHHHHHHHHh-ccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCC
Q 024630 105 IMLDEEILKRELQIAIE-EEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGAS 183 (265)
Q Consensus 105 ~~~~~~~l~~~L~~ai~-~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~ 183 (265)
++.+...|++-+++.+- --|++.||.+ .|-.-.+++=-+-.++|.+||..
T Consensus 51 ~k~dp~~l~~~v~~~l~p~vd~~~~a~~-----vLGk~~k~aspeQ~~~F~~aF~~------------------------ 101 (202)
T COG2854 51 IKQDPQYLRQIVDQELLPYVDFKYAAKL-----VLGKYYKTASPEQRQAFFKAFRT------------------------ 101 (202)
T ss_pred hccCHHHHHHHHHHHhhhhhcHHHHHHH-----HhccccccCCHHHHHHHHHHHHH------------------------
Confidence 34455666666655554 4677777766 23333334444444455444432
Q ss_pred CccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCCEEEEEEEEEEecCCcceeeEEEEEEEEEeC--CeEEEEEE
Q 024630 184 GISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQFVTNVFEKLD--GQWFICIH 258 (265)
Q Consensus 184 ~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GDvA~Vt~~e~v~~~G~~~g~~raTnVfrR~d--G~WrIVhh 258 (265)
-+.+.|...+.++.+ -++++...+..-.|+.+.| -.+.+.. |.+ .+....-||+.. |+||+.-.
T Consensus 102 ------yl~q~Y~~aL~~Y~~-q~~~v~~~~~~~~~~~v~V-~~~Ii~~-~~~--PV~l~f~~r~~~~~G~WKv~Dv 167 (202)
T COG2854 102 ------YLEQTYGQALLDYKG-QTLKVKPSRPLGDGTDVIV-RVEIIDP-GQK--PVKLDFLWRKNNQTGKWKVYDV 167 (202)
T ss_pred ------HHHHHHHHHHHHccC-CCceeCCCcccCCCCeEEE-EEEEccC-CCC--CeEEEEEEeecCCcCCeeEEEe
Confidence 122333333333432 2444444444444443333 3334444 433 345666688877 89998643
No 95
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.52 E-value=28 Score=31.76 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHhhhcC
Q 024630 145 SVLAANARFYDSFKNGDLATMQGLWAR 171 (265)
Q Consensus 145 aI~aa~~afy~Af~aGDldAL~alwAd 171 (265)
.+....+++.+|+..-|+++|.++|..
T Consensus 41 rvdrivdq~~~a~q~~Dl~aLr~~W~~ 67 (241)
T KOG1333|consen 41 RVDRIVDQLQQAMQVYDLAALRDYWSY 67 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999975
No 96
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=35.39 E-value=95 Score=26.20 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHH
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDS 156 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~A 156 (265)
..+.+-+..++++.++||.-|+.|-|-+-....+.+. ...+...-+++
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~-ar~l~A~al~~ 116 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE-ARQLKADALEQ 116 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHH
Confidence 4566778888999999999999999988777766553 34444444433
No 97
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=35.26 E-value=2.3e+02 Score=24.91 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=13.0
Q ss_pred EEEEEEEEEeCCeEEEEE
Q 024630 240 QFVTNVFEKLDGQWFICI 257 (265)
Q Consensus 240 ~raTnVfrR~dG~WrIVh 257 (265)
+.+...+++.+|+||+.=
T Consensus 140 i~V~y~l~~~~g~WkV~D 157 (198)
T TIGR03481 140 VKFDYIMRQGQGKWRIVD 157 (198)
T ss_pred EEEEEEEEecCCCeEEEE
Confidence 445555678899999864
No 98
>PF14805 THDPS_N_2: Tetrahydrodipicolinate N-succinyltransferase N-terminal; PDB: 3EG4_A 3TDT_A 2TDT_A 1KGT_A 1TDT_A 1KGQ_A 3BXY_A 3GOS_A 3TK8_A.
Probab=34.96 E-value=1.2e+02 Score=22.81 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHH
Q 024630 111 ILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLA 163 (265)
Q Consensus 111 ~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDld 163 (265)
.|+...+.|++ -||+|. +.....++.++.....+++.+|-+-
T Consensus 2 ~l~~~Ie~aw~---------~r~~l~--~~~~~~~~~~av~~~i~~Ld~G~lR 43 (70)
T PF14805_consen 2 QLQKIIEAAWE---------NRDELT--PSNADPELRDAVEEVIELLDSGELR 43 (70)
T ss_dssp HHHHHHHHHHH---------GGGG-B--TTT--HHHHHHHHHHHHHHHTTSS-
T ss_pred hHHHHHHHHHH---------hHhhCC--CccCCHHHHHHHHHHHHHhcCCCeE
Confidence 45555555554 366665 4455677888888888888888754
No 99
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=34.79 E-value=2.4e+02 Score=25.10 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=26.4
Q ss_pred eEEEEEeEEEEEeCCEEEEEEEEEEecCCcceeeEEEEEEEEEe--CCeEEEEE
Q 024630 206 LAIELKNVRVHVRGNVGYVTCIEFVRTKGTSWGGQFVTNVFEKL--DGQWFICI 257 (265)
Q Consensus 206 l~iel~dv~V~v~GDvA~Vt~~e~v~~~G~~~g~~raTnVfrR~--dG~WrIVh 257 (265)
-++++...+....++.+.|.. +.+..+|.+ .+.+...|++. +|+||+.-
T Consensus 115 q~i~v~~~~~~~~~~~~~V~t-~ii~~~g~~--~i~v~y~~~~~~~~g~WkVyD 165 (211)
T PRK15117 115 QTYQIAPEQPLGDATIVPIRV-TIIDPNGRP--PVRLDFQWRKNSQTGNWQAYD 165 (211)
T ss_pred ceEEEeecccCCCCCEEEEEE-EEEecCCCC--CEEEEEEEEECCCCCCceEEE
Confidence 456665544334445555532 234333422 34555567764 79999864
No 100
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=34.51 E-value=79 Score=25.33 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=40.3
Q ss_pred ccccccHHHHHHHHHHHHhc--cCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHH
Q 024630 103 ESIMLDEEILKRELQIAIEE--EDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATM 165 (265)
Q Consensus 103 ~~~~~~~~~l~~~L~~ai~~--Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL 165 (265)
-++..+|+.|+++|+++... |.+-++|. +-=|-.|+. +.+++.++.+....-|..|-..+-
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAl-KAGLgeieI-~d~eL~~aFeeiAaRFR~g~~~~~ 68 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIAL-KAGLGEIEI-EEAELQAAFEELAKRFRGGKGAAT 68 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcccccc-CHHHHHHHHHHHHHHHhcCCCccc
Confidence 45667899999999999885 67777663 222233332 356777777777777877654443
No 101
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=32.75 E-value=3.2e+02 Score=23.43 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHHHhccCcceEEEEEeEEEEEeCC-E
Q 024630 143 KTSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVVWMNYEFPLAIELKNVRVHVRGN-V 221 (265)
Q Consensus 143 k~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~vfa~~~~pl~iel~dv~V~v~GD-v 221 (265)
++++..+. +--+|+|..|++.++-.|+.| ..- .--..-+.|+++|.+....-+.. .+...+.---....|+ +
T Consensus 10 etA~~KVr-~AEdaWNsrdP~~ValaYT~D--s~W-RNR~eF~~GR~~I~~FLtrKW~r---E~~YrLiKELwaf~~nRI 82 (143)
T PF07080_consen 10 ETAIQKVR-AAEDAWNSRDPEKVALAYTPD--SVW-RNRDEFLTGREEIVAFLTRKWER---ELDYRLIKELWAFTDNRI 82 (143)
T ss_dssp HHHHHHHH-HHHHHHTTT-HHHHHTTEEEE--EEE-EETTEEE-SHHHHHHHHHHHHHH---SEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHH-HHHhccccCChhHheeccCCC--Ccc-cCcccccCcHHHHHHHHHHHHHH---hhhhhhHHhhhhccCCeE
Confidence 34444433 234788999999999999987 221 12334578999999988887753 2344443222234444 5
Q ss_pred EEEEEEEEEecCCcceeeEEEEEEEEEeCCeEEEEEEeeCC
Q 024630 222 GYVTCIEFVRTKGTSWGGQFVTNVFEKLDGQWFICIHHASP 262 (265)
Q Consensus 222 A~Vt~~e~v~~~G~~~g~~raTnVfrR~dG~WrIVhhHaSp 262 (265)
|+-..+|-....| .+-+..-.--|+-.+.+ +|...|+|.
T Consensus 83 AVRF~YE~~d~~g-qW~RsyGnEnWeFd~~G-lM~~R~aSi 121 (143)
T PF07080_consen 83 AVRFAYEWHDDSG-QWFRSYGNENWEFDEDG-LMRRRHASI 121 (143)
T ss_dssp EEEEEEEEE-TTS--EEEEEEEEEEEE-TTS--EEEEEEEE
T ss_pred EEEEeEEEEcCCC-CEEecccccccccCCCc-cHHHhhccc
Confidence 6656666666555 33334444445554332 456666663
No 102
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.58 E-value=30 Score=31.36 Aligned_cols=70 Identities=26% Similarity=0.259 Sum_probs=49.5
Q ss_pred cccCCCccccccccHHHHHHHHHHHHhc-----cCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhh
Q 024630 95 DTEGNLSGESIMLDEEILKRELQIAIEE-----EDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLW 169 (265)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~L~~ai~~-----Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alw 169 (265)
|--||..-+.++.++.+++..|+.+-+. ..|+.|..-|- .+..+|..+.+ .-.+|...|++.+..||
T Consensus 27 d~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs-------~sQrEvn~LLq-RK~sWs~~DleRFT~Ly 98 (207)
T PF05546_consen 27 DVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS-------SSQREVNELLQ-RKHSWSPADLERFTELY 98 (207)
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh-cccCCChHHHHHHHHHH
Confidence 4567777788888888888888877553 67777776554 23334444433 23578899999999999
Q ss_pred cCC
Q 024630 170 ARG 172 (265)
Q Consensus 170 AdD 172 (265)
..|
T Consensus 99 r~d 101 (207)
T PF05546_consen 99 RND 101 (207)
T ss_pred Hhh
Confidence 987
No 103
>PRK10404 hypothetical protein; Provisional
Probab=31.05 E-value=59 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=39.4
Q ss_pred cccccccHHHHHHHHHHHHhc---cCHHHHHhhhchhhcccccchhhHHHHHHHHHH
Q 024630 102 GESIMLDEEILKRELQIAIEE---EDYVQAAKLRDSLKMLDEDSKTSVLAANARFYD 155 (265)
Q Consensus 102 ~~~~~~~~~~l~~~L~~ai~~---Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~ 155 (265)
.+.+..++..|-.+|++..+. +--|++..+|+++...-.+.+..+..+.+..++
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~ 63 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYY 63 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456667888888888877764 677888999998888777777666666655443
No 104
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.12 E-value=1.7e+02 Score=24.92 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHH
Q 024630 148 AANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEV 197 (265)
Q Consensus 148 aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~ 197 (265)
.++......+.+.|.++++++..-+ .+. +.-.| +.|.++....+..
T Consensus 85 ~ai~~al~~akakn~~av~allD~d-~l~-l~~dg--~~Gldeqi~~lke 130 (155)
T PF06810_consen 85 SAIKSALKGAKAKNPKAVKALLDLD-KLK-LDDDG--LKGLDEQIKALKE 130 (155)
T ss_pred HHHHHHHHHcCCCCHHHHHHhcCHH-Hee-eCCCc--cccHHHHHHHHHh
Confidence 3444444556789999999998665 333 33444 8899888877765
No 105
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=28.56 E-value=1.1e+02 Score=25.71 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhccc-----cc----chhhHHHHHHHHHHHHHcCCHHHHHhhhcCC
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKMLD-----ED----SKTSVLAANARFYDSFKNGDLATMQGLWARG 172 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~-----~D----sk~aI~aa~~afy~Af~aGDldAL~alwAdD 172 (265)
....|+++|+.|-.=|++.+||.-=|++.-.. .+ .-..|.........|-..||+.+|+.+.-.+
T Consensus 12 ~~~~l~~~l~~A~sYeEW~~~A~~LD~l~G~~~Wk~~~~s~~YD~~lI~~rl~~L~~aR~~~d~~~l~~~Lr~~ 85 (145)
T PF11815_consen 12 RRRRLRRQLRNAESYEEWKEAAQELDELEGNDAWKEDDESDYYDYRLIRERLRELREARQSGDIEALMFLLRTG 85 (145)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcchhhcCCCCcccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44577788888777788899999988875432 11 2566888999999999999999999886543
No 106
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=28.50 E-value=73 Score=28.96 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhccCHHHHHh----hhchhhcccccchhhHHHHH--HHHHHHHHcCCHHHHHhhhcCCCc
Q 024630 110 EILKRELQIAIEEEDYVQAAK----LRDSLKMLDEDSKTSVLAAN--ARFYDSFKNGDLATMQGLWARGDN 174 (265)
Q Consensus 110 ~~l~~~L~~ai~~Edye~AA~----~RD~i~~l~~Dsk~aI~aa~--~afy~Af~aGDldAL~alwAdDd~ 174 (265)
..|+++|++.+ ++|+.-++ +|..++.. +.+.+++... ..+++.+.+|+.+.|...+.-.++
T Consensus 150 r~lR~~ie~~l--~~~~~l~~~l~~~R~~vk~~--~~r~~i~~~l~~~~~~~~l~~~~~~~~l~~~~~~~~ 216 (223)
T PRK05562 150 VFIGEKVKNFL--KKYDDFIEYVTKIRNKAKKN--ELKDEIIEFICSDDFYFFYKKGKANLILSMFYGEED 216 (223)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhChHHHHHHHcchHHHHHHHhhhHHH
Confidence 45777888777 34666554 45555553 4455555443 457788889999998888765543
No 107
>PRK11032 hypothetical protein; Provisional
Probab=27.84 E-value=45 Score=28.97 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHhhhcCCCc
Q 024630 150 NARFYDSFKNGDLATMQGLWARGDN 174 (265)
Q Consensus 150 ~~afy~Af~aGDldAL~alwAdDd~ 174 (265)
..+.+.++.++|++.+...|.+.+.
T Consensus 47 El~lv~~ylkRDL~ef~~~~~~~~~ 71 (160)
T PRK11032 47 EVDLITRAVRRDLEEFARSYEESKE 71 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4456778899999999998887643
No 108
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=27.48 E-value=1e+02 Score=22.72 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhccCHHHHHh-hhchhhcccccchhhHHHHHHHHHHHHHcCC
Q 024630 110 EILKRELQIAIEEEDYVQAAK-LRDSLKMLDEDSKTSVLAANARFYDSFKNGD 161 (265)
Q Consensus 110 ~~l~~~L~~ai~~Edye~AA~-~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGD 161 (265)
.++++-+++.|+.+.|.-+-+ +|+-|+.++... +.+.++.+.+.+++..|+
T Consensus 8 ~~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e-~~~~~Lr~~i~~g~~sg~ 59 (69)
T TIGR02606 8 EHLESFIRSQVQSGRYGSASEVVRAALRLLEERE-TKLQALRDAIEEGEQSGE 59 (69)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence 457778888999999987755 466666665433 345555555555555553
No 109
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=27.29 E-value=2.4e+02 Score=22.41 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhhc
Q 024630 109 EEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWA 170 (265)
Q Consensus 109 ~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alwA 170 (265)
+..+++..+...+.++|++|..+=+.+-.+..-.+..-..+...+ ...|+......+|.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~---~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRAL---AAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH---HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHCcCHHHHHHHHH
Confidence 344566666677789999999997777777766666666666666 55677666665553
No 110
>PF12731 Mating_N: Mating-type protein beta 1; InterPro: IPR024333 This entry represents a group of homeodomain-containing transcription factor proteins involved in mating [].
Probab=26.89 E-value=67 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.559 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHcCC--HHHHHhhhcC
Q 024630 141 DSKTSVLAANARFYDSFKNGD--LATMQGLWAR 171 (265)
Q Consensus 141 Dsk~aI~aa~~afy~Af~aGD--ldAL~alwAd 171 (265)
+-+..+.+++++|.+|+..|+ ++++..-|..
T Consensus 13 ~I~~~L~~~e~~fl~sL~~g~~~L~~F~~~w~~ 45 (95)
T PF12731_consen 13 DIRQALQALEADFLSSLRGGSDALESFLSSWSS 45 (95)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 345678888999999999999 5677777754
No 111
>PF15469 Sec5: Exocyst complex component Sec5
Probab=26.45 E-value=61 Score=27.63 Aligned_cols=33 Identities=30% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhccCHHHHHhhhchhhcccccc
Q 024630 110 EILKRELQIAIEEEDYVQAAKLRDSLKMLDEDS 142 (265)
Q Consensus 110 ~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Ds 142 (265)
=.|=..|.++|+++||+.|..--...+.+-.+.
T Consensus 87 F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 87 FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 345667888888888888887766666655444
No 112
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=25.97 E-value=20 Score=36.34 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhhhchhhcc
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKLRDSLKML 138 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l 138 (265)
-|..+.+.-++||+.|||.-|-.+.-.|+.|
T Consensus 172 iIgaidenKqeAVakEdfdlAKkaklAiaDL 202 (666)
T KOG4825|consen 172 IIGAIDENKQEAVAKEDFDLAKKAKLAIADL 202 (666)
T ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3445566666666666666665554444443
No 113
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.63 E-value=55 Score=28.60 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhc-----cCHH-------HHHhhhchhhcccccc
Q 024630 109 EEILKRELQIAIEE-----EDYV-------QAAKLRDSLKMLDEDS 142 (265)
Q Consensus 109 ~~~l~~~L~~ai~~-----Edye-------~AA~~RD~i~~l~~Ds 142 (265)
|+.++.+|.+||++ ++.+ +.-+||||++.|+.+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888875 2222 3445677777776554
No 114
>CHL00095 clpC Clp protease ATP binding subunit
Probab=25.57 E-value=57 Score=34.85 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.4
Q ss_pred cccccHHHHHHHHHHHHhccCHHHHHhhhchhhccc
Q 024630 104 SIMLDEEILKRELQIAIEEEDYVQAAKLRDSLKMLD 139 (265)
Q Consensus 104 ~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~ 139 (265)
....++..|+.+.+.++++++|++++.+|++...++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (821)
T CHL00095 414 ELDKELREILKDKDEAIREQDFETAKQLRDREMEVR 449 (821)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 344566777888888899999999999998755433
No 115
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=25.42 E-value=1.1e+02 Score=23.12 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHH
Q 024630 107 LDEEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFK 158 (265)
Q Consensus 107 ~~~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~ 158 (265)
...+.|++..+.-| +++++|-..-..-..|....+.+|.+-|.+.-+|+.
T Consensus 8 DNVEkLQ~mi~nTi--eN~~eAee~l~~~~el~~~~~~~i~eKN~RR~eSi~ 57 (70)
T TIGR03090 8 DNVEKLQQMIDNTI--ENMEEANEYIEAHAELSEEEKQRIEEKNERREQSID 57 (70)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHhHHHHHH
Confidence 34455555555444 555555544333334566667778888887776653
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=24.38 E-value=2.9e+02 Score=20.20 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccCHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHcCCHHHHHhhhcC
Q 024630 111 ILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTSVLAANARFYDSFKNGDLATMQGLWAR 171 (265)
Q Consensus 111 ~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~aI~aa~~afy~Af~aGDldAL~alwAd 171 (265)
.+-..-....+.++|++|...=+++.....+......+....-.-.+..|+.+.-...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3334445566778999998887766555444322222222222234667777766666554
No 117
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=24.01 E-value=75 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=23.8
Q ss_pred cccccHHHHHHHHHHHHhccCHHHHHhhhchh
Q 024630 104 SIMLDEEILKRELQIAIEEEDYVQAAKLRDSL 135 (265)
Q Consensus 104 ~~~~~~~~l~~~L~~ai~~Edye~AA~~RD~i 135 (265)
.....+.++..+|..++..+||+.|+.+-.++
T Consensus 35 ~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kL 66 (78)
T PF07743_consen 35 EIEERIKELIKELAEAFDAKDWEEAKEALRKL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 34456677888999999999999999874444
No 118
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.98 E-value=5.6e+02 Score=23.40 Aligned_cols=55 Identities=11% Similarity=-0.060 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHhhh---cCCCceEEecCCCCCccCHHHHHHHHHH-HHh
Q 024630 146 VLAANARFYDSFKNGDLATMQGLW---ARGDNVCCVHPGASGISGYDPVMESWEV-VWM 200 (265)
Q Consensus 146 I~aa~~afy~Af~aGDldAL~alw---AdDd~V~~vhPgg~~l~Gr~aI~aswe~-vfa 200 (265)
-....+.|.+-+..-|.+.-.++. +.+..+++..+...+-.-++.+.+.... .++
T Consensus 146 ~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~ 204 (250)
T PRK14474 146 EQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLHQTHLI 204 (250)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC
Confidence 456778888888888888777776 4444555555555554556677776666 554
No 119
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.47 E-value=41 Score=25.86 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=20.7
Q ss_pred eecceeccccCcccccccceeecC
Q 024630 15 MNVKAVKCMPSSCINNLRKHCSLS 38 (265)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~ 38 (265)
.+.+.+.++||||.+++|-++-|+
T Consensus 50 ~~d~q~~niscsf~v~~~I~y~L~ 73 (76)
T PF07334_consen 50 EDDQQFLNISCSFQVTLQIPYELQ 73 (76)
T ss_pred CCccccCCCCeEEEeecceeeeCC
Confidence 678889999999999999877554
No 120
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=22.40 E-value=74 Score=26.06 Aligned_cols=47 Identities=32% Similarity=0.390 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHhh----hchhhcccccchhhHHHHHHHHH
Q 024630 108 DEEILKRELQIAIEEEDYVQAAKL----RDSLKMLDEDSKTSVLAANARFY 154 (265)
Q Consensus 108 ~~~~l~~~L~~ai~~Edye~AA~~----RD~i~~l~~Dsk~aI~aa~~afy 154 (265)
+++++.++|+..++.|---+|+++ |-||+.|..-.+.++.+-|-.-|
T Consensus 15 ~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y 65 (109)
T PHA02571 15 EVEELLSELQARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQY 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 468888999999999888888887 66777777766666666554433
No 121
>PF13211 DUF4019: Protein of unknown function (DUF4019)
Probab=21.90 E-value=2.3e+02 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.9
Q ss_pred EEEEEEEEEe-CCeEEEE
Q 024630 240 QFVTNVFEKL-DGQWFIC 256 (265)
Q Consensus 240 ~raTnVfrR~-dG~WrIV 256 (265)
...|.+|+++ ||.|+++
T Consensus 86 ~~Etvt~~~e~dg~Wr~~ 103 (105)
T PF13211_consen 86 ATETVTFRLEEDGRWRVV 103 (105)
T ss_pred eEEEEEEEEcCCCcEEeC
Confidence 6778888886 8999986
No 122
>KOG2559 consensus Predicted pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=94 Score=29.30 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=46.5
Q ss_pred cceeccccCcccccccc------eeecCCCCCcceeeeeecCccccceeeecCCCcccCCCCCCCcccccccCCcccccc
Q 024630 17 VKAVKCMPSSCINNLRK------HCSLSPLNPYQCNVGLVGSSARRNNIRFMPSANVNLNCEPLPFGRIFQLSSLRPCQV 90 (265)
Q Consensus 17 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (265)
+..+-+-|--|--+||. |+ ||--++--|+|| -| |.|++.|- +-+...++-.|.--..+
T Consensus 72 V~~~~nhPlv~g~s~~~~~V~v~h~-l~~~~sgvl~~g---Vg---hgc~~i~~---------~mlg~aT~~~r~Dgri~ 135 (318)
T KOG2559|consen 72 VADYRNHPLVSGRSIRQEDVQVVHV-LPLATSGVLLFG---VG---HGCESIPE---------LMLGSATNVYRIDGRIK 135 (318)
T ss_pred hhhhccCCcccCcchhhcceeeEEe-ecccccceEEEe---cC---cchhhhhh---------hhhccchhccCccceEe
Confidence 44556777778888876 77 777776666655 22 23566652 11455556666666556
Q ss_pred cccccccCCCccccccccHHHHHHHHHHH
Q 024630 91 KQSDDTEGNLSGESIMLDEEILKRELQIA 119 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~a 119 (265)
| ++.-+- .+.+.+..-+..|+..-+.|
T Consensus 136 ~-~~n~dh-Vs~~ri~~vla~lq~shq~a 162 (318)
T KOG2559|consen 136 K-SENIDH-VSKHRIEKVLARLQSSHQSA 162 (318)
T ss_pred e-ecccch-hhHHHHHHHHHHHHHHHHHH
Confidence 6 555443 22233333333444444444
No 123
>PF04721 DUF750: Domain of unknown function (DUF750) ; InterPro: IPR006588 The PAW domain (present in PNGases and other worm proteins) is found as a single copy at the C terminus of metazoan peptide:N-glycanase (PNGase) and in multiple copies in hypothetical Caenorhabditis elegans proteins peptide:N-glycanases (PNGases) []. The C-terminal PAW domain of PNGase binds to the mannose moieties of N-linked oligosaccharide chains []. The PAW domain is a slightly elongated molecule and displays a beta-sandwich architecture, which is composed of two layers, containing nine and eight antiparallel beta-strands, respectively, and three additional short helices []. Some proteins known to contain a PAW domain are listed below: Animal peptide:N-glycanase (PNGase) 3.5.1.52 from EC, catalyses the deglycosylation of several misfolded N-linked glycoproteins by cleaving the bulky glycan chain before the proteins are degraded by the proteasome. Caenorhabditis elegans putative uncharacterised protein C17B7.5. ; GO: 0006516 glycoprotein catabolic process, 0005737 cytoplasm; PDB: 2G9F_A 2I74_B 2G9G_A.
Probab=21.01 E-value=42 Score=24.72 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.7
Q ss_pred ecCCcceeeEEEEEEEEEeCCeEEEEEEee
Q 024630 231 RTKGTSWGGQFVTNVFEKLDGQWFICIHHA 260 (265)
Q Consensus 231 ~~~G~~~g~~raTnVfrR~dG~WrIVhhHa 260 (265)
..+|.+.....+-+|+|+++-.|.+|..|-
T Consensus 19 ~~dGs~~~~~~~~nI~R~ve~d~~~vYL~r 48 (62)
T PF04721_consen 19 NEDGSPIQPWKVENIERKVERDWNMVYLHR 48 (62)
T ss_dssp CGTTEEEE-SSEESEEEEEETTTTEEEEEE
T ss_pred CCCCeEEeeEEeeeEEEEEeCCCcEEEEEE
Confidence 346766666688999999999999998885
No 124
>PF03260 Lipoprotein_11: Lepidopteran low molecular weight (30 kD) lipoprotein; InterPro: IPR004943 This family includes Lepidopteran low molecular weight (30 kDa) lipoprotein, which is an extracellular protein of unknown function. Biosynthesis occurs in a stage-dependent fashion in the fat body. ; GO: 0005576 extracellular region; PDB: 3PUB_B.
Probab=20.61 E-value=2.1e+02 Score=26.81 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHhhhchhhcccccchhh-HHHHHHHHHHHHHcCCHHHHHhhhcCC
Q 024630 109 EEILKRELQIAIEEEDYVQAAKLRDSLKMLDEDSKTS-VLAANARFYDSFKNGDLATMQGLWARG 172 (265)
Q Consensus 109 ~~~l~~~L~~ai~~Edye~AA~~RD~i~~l~~Dsk~a-I~aa~~afy~Af~aGDldAL~alwAdD 172 (265)
-..|+++|-..|-.+||++|+..- ..|..+.+.+ |..+..+..+.-.+.=.+=--.||..+
T Consensus 21 ~~~~e~~LYn~Vv~~dYd~AV~~~---~~l~~~~~~~vI~~vV~rLi~~~~~n~~~yAYKLw~~g 82 (253)
T PF03260_consen 21 NKELEDKLYNSVVTGDYDKAVSRT---KELYSNNKGDVIKNVVNRLIRNGKRNIMDYAYKLWASG 82 (253)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH---HHHHHTT-HHHHHHHHHHHHHTT-THHHHHHHHHHHTT
T ss_pred hHHHHHHHhHHhhhccHHHHHHHH---HHHHHcCCCcHHHHHHHHHHHhChhhhHHHHHHHhcCC
Confidence 467999999999999999999763 4455555555 566666664443333344445677653
No 125
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=5.2e+02 Score=21.66 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHhhhcCCCceEEecCCCCCccCHHHHHHHHHHH-HhccCcceEEEEEeEEEEEeCCE-
Q 024630 144 TSVLAANARFYDSFKNGDLATMQGLWARGDNVCCVHPGASGISGYDPVMESWEVV-WMNYEFPLAIELKNVRVHVRGNV- 221 (265)
Q Consensus 144 ~aI~aa~~afy~Af~aGDldAL~alwAdDd~V~~vhPgg~~l~Gr~aI~aswe~v-fa~~~~pl~iel~dv~V~v~GDv- 221 (265)
.+|..+..++|-+.=+.|-..+.++|-+. .++.-.|..+.|.++|.+-.... |... ...|+..|-+-.-.|++
T Consensus 7 e~v~~~FvqhYY~~FD~dR~ql~~lY~~~---S~LTfEGqq~qG~~~IveKl~sLpFqki--qh~IttvD~QPt~~g~il 81 (126)
T KOG2104|consen 7 EAVAKAFVQHYYSLFDNDRSQLGALYIDT---SMLTFEGQQIQGKDAIVEKLTSLPFQKI--QHSITTVDSQPTPDGGIL 81 (126)
T ss_pred HHHHHHHHHHHHHHhcCchhHhhhhhccc---ceeeEcchhhcchHHHHHHHhcCChhhh--hceeeecccccCCCCcEE
Confidence 45555666666666668999999999875 55555788899999999866543 3221 12344444444444443
Q ss_pred EEEEEEEEEecCCcceeeEEEEEEEEEe---CCeEEEEE
Q 024630 222 GYVTCIEFVRTKGTSWGGQFVTNVFEKL---DGQWFICI 257 (265)
Q Consensus 222 A~Vt~~e~v~~~G~~~g~~raTnVfrR~---dG~WrIVh 257 (265)
.+|++.-... . ....+..+||-.. .|.|.+.+
T Consensus 82 v~V~G~Lk~d--E--d~~~~FsQvF~L~~n~~~~~~v~n 116 (126)
T KOG2104|consen 82 VMVVGQLKLD--E--DPILRFSQVFLLKPNIQGSYYVFN 116 (126)
T ss_pred EEEeeeeeec--c--CCccceeeEEEEeEcCCCCEEEEe
Confidence 4444543332 1 1345677778776 37887754
Done!