Query 024631
Match_columns 265
No_of_seqs 126 out of 154
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10533 Plant_zn_clust: Plant 99.5 6.3E-15 1.4E-19 104.3 2.5 37 208-250 1-37 (47)
2 PF05344 DUF746: Domain of Unk 90.9 0.38 8.2E-06 36.7 4.0 53 29-81 2-61 (65)
3 KOG1924 RhoA GTPase effector D 37.0 1.3E+02 0.0029 33.3 7.7 37 132-168 609-647 (1102)
4 cd00686 Terpene_cyclase_cis_tr 36.5 55 0.0012 32.4 4.5 24 17-40 257-280 (357)
5 PF10083 DUF2321: Uncharacteri 19.6 38 0.00082 30.0 0.1 17 51-67 119-135 (158)
6 PHA03141 helicase-primase prim 18.5 1.4E+02 0.0031 24.7 3.2 20 47-66 82-101 (101)
7 COG1675 TFA1 Transcription ini 17.5 1.2E+02 0.0026 27.2 2.8 64 16-79 4-69 (176)
8 PF09883 DUF2110: Uncharacteri 17.3 50 0.0011 30.8 0.4 12 62-73 173-184 (225)
9 KOG0543 FKBP-type peptidyl-pro 16.0 1.4E+02 0.0031 30.0 3.1 42 24-65 274-320 (397)
10 PF07974 EGF_2: EGF-like domai 13.9 98 0.0021 20.1 1.0 13 223-238 12-24 (32)
No 1
>PF10533 Plant_zn_clust: Plant zinc cluster domain; InterPro: IPR018872 This zinc binding domain is found associated with the WRKY domain IPR003657 from INTERPRO [].
Probab=99.51 E-value=6.3e-15 Score=104.26 Aligned_cols=37 Identities=41% Similarity=0.758 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCccccCcccccccccccc
Q 024631 208 KKRCQDHKDHSDDLSGKFSGSTSGNNKCHCSKRRYVLSNFTFG 250 (265)
Q Consensus 208 KRkCs~~g~~sed~sgKC~~~~sssgRCHCSKKRK~Rvk~~~~ 250 (265)
||+|+++ ++++++|++ +++||||||||||+|+||+|-
T Consensus 1 krkC~~~----~~~~~~~~~--sssgrCHCsKkRK~RvKR~ir 37 (47)
T PF10533_consen 1 KRKCHSH----NDSSGKCKC--SSSGRCHCSKKRKSRVKRTIR 37 (47)
T ss_pred CCccccc----CcccCcccc--CCCCcccCCCcccccceeeEE
Confidence 7999998 355677642 789999999999999999984
No 2
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=90.91 E-value=0.38 Score=36.68 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCCCCC----cc-hhhHHHHHHhchhhhhhhcCCCCc--cccccCCCCC
Q 024631 29 SMEHLIRLMSHHQSSNH----VD-CSDLTDLTVSKFKKVISLLNRTGH--ARFRRGPVHS 81 (265)
Q Consensus 29 S~~~ll~lLS~~~~~~~----~~-~~~~td~AVskFkkViSLL~rtGH--ARfRr~p~~s 81 (265)
.++.+|++||++-.-.+ .. -..++..-|.+|++-+=.||.+|| +|+|-+-.++
T Consensus 2 ~~~~fIrlLs~~~s~~~Aa~~lG~~~~~v~~wv~~fR~wll~LDPSG~~E~RVRLg~r~a 61 (65)
T PF05344_consen 2 KARAFIRLLSQQISVAQAADRLGTDPGTVRRWVRMFRQWLLQLDPSGHWEARVRLGVRPA 61 (65)
T ss_pred cHHHHHHHhcccccHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCCChHHHhhcCCCCC
Confidence 46789999998733211 01 123456789999999999999999 9999765433
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=37.04 E-value=1.3e+02 Score=33.26 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=20.8
Q ss_pred cccc-cCCc-cccCCCCCcceeecCCCcccccCcccccc
Q 024631 132 TLDF-TKPS-LFSGNVKSTELEFSKDSFCVSSNSSFMSS 168 (265)
Q Consensus 132 ~l~f-~kp~-~~~~~~s~~~l~F~~ss~t~Sss~SF~SS 168 (265)
-|.| .||. +++..+.-..+|+.+-.|.-=+-.+|.-=
T Consensus 609 vlP~gLkpKK~~k~e~~Mrr~nW~kI~p~d~s~~cFWvk 647 (1102)
T KOG1924|consen 609 VLPFGLKPKKVYKPEVPMRRFNWSKIVPRDLSENCFWVK 647 (1102)
T ss_pred cCCCCCCccccCCCCCccccCCccccCccccCccceeee
Confidence 3455 4442 55555555566666655554466777755
No 4
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=36.45 E-value=55 Score=32.42 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 024631 17 TAIQEAATQGIKSMEHLIRLMSHH 40 (265)
Q Consensus 17 ~aVeEAa~agleS~~~ll~lLS~~ 40 (265)
++.++.....+++++++..+|+..
T Consensus 257 eAL~~lt~dTv~~s~rv~~VLse~ 280 (357)
T cd00686 257 EALEKLTQDTLHSSKQMVAVFSDK 280 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567778888899999999999975
No 5
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=19.61 E-value=38 Score=30.04 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=14.6
Q ss_pred HHHHHHhchhhhhhhcC
Q 024631 51 LTDLTVSKFKKVISLLN 67 (265)
Q Consensus 51 ~td~AVskFkkViSLL~ 67 (265)
-|..||.||||+++-+.
T Consensus 119 kT~vA~~rfKk~~~K~g 135 (158)
T PF10083_consen 119 KTKVAATRFKKILSKAG 135 (158)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 38899999999998764
No 6
>PHA03141 helicase-primase primase subunit; Provisional
Probab=18.50 E-value=1.4e+02 Score=24.68 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.5
Q ss_pred chhhHHHHHHhchhhhhhhc
Q 024631 47 DCSDLTDLTVSKFKKVISLL 66 (265)
Q Consensus 47 ~~~~~td~AVskFkkViSLL 66 (265)
....+++--+.+||||.+||
T Consensus 82 ~~~~~~~~~le~~~~iL~L~ 101 (101)
T PHA03141 82 TINKETDHKLEGFKKILCLL 101 (101)
T ss_pred cchHHHHHHHHHHHHHHhhC
Confidence 44667778999999999986
No 7
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=17.55 E-value=1.2e+02 Score=27.15 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHhcCCCCCCCcchhhHHHHHHhchhhhhhhcCCCCccccccCCC
Q 024631 16 QTAIQEAATQGI--KSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPV 79 (265)
Q Consensus 16 ~~aVeEAa~agl--eS~~~ll~lLS~~~~~~~~~~~~~td~AVskFkkViSLL~rtGHARfRr~p~ 79 (265)
|..+++-...=+ .+++.|+..|=....-.+.++...++.=++.-+|++.+|-..|++=|||...
T Consensus 4 ~~~~~~~~~~i~~g~~~~~v~~~l~~kge~tDeela~~l~i~~~~vrriL~~L~e~~li~~~k~rd 69 (176)
T COG1675 4 DPVLQELLKSIVRGDEAVLVVDALLEKGELTDEELAELLGIKKNEVRRILYALYEDGLISYRKKRD 69 (176)
T ss_pred cHHHHHHHHHHccCchhhHHHHHHHhcCCcChHHHHHHhCccHHHHHHHHHHHHhCCceEEEeecc
Confidence 344555554433 4578888888664322345788888888999999999999999999998774
No 8
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=17.29 E-value=50 Score=30.80 Aligned_cols=12 Identities=75% Similarity=0.988 Sum_probs=9.4
Q ss_pred hhhhcCCCCccc
Q 024631 62 VISLLNRTGHAR 73 (265)
Q Consensus 62 ViSLL~rtGHAR 73 (265)
|=+-|+||||+|
T Consensus 173 v~~alnrtGH~r 184 (225)
T PF09883_consen 173 VRAALNRTGHAR 184 (225)
T ss_pred HHHHHHhccccc
Confidence 445679999997
No 9
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=15.95 E-value=1.4e+02 Score=30.00 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-----cchhhHHHHHHhchhhhhhh
Q 024631 24 TQGIKSMEHLIRLMSHHQSSNH-----VDCSDLTDLTVSKFKKVISL 65 (265)
Q Consensus 24 ~agleS~~~ll~lLS~~~~~~~-----~~~~~~td~AVskFkkViSL 65 (265)
++|+++|++||.+=+..---.. .-...+.+.|..-|+||+-|
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5789999999886433210011 12244578899999999987
No 10
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=13.94 E-value=98 Score=20.09 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.1
Q ss_pred CccccCCCCCCccccC
Q 024631 223 GKFSGSTSGNNKCHCS 238 (265)
Q Consensus 223 gKC~~~~sssgRCHCS 238 (265)
|+|. ...++|+|-
T Consensus 12 G~C~---~~~g~C~C~ 24 (32)
T PF07974_consen 12 GTCV---SPCGRCVCD 24 (32)
T ss_pred CEEe---CCCCEEECC
Confidence 6884 335999994
Done!